Query 019224
Match_columns 344
No_of_seqs 33 out of 35
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dci_A Uncharacterized protein 15.7 65 0.0022 28.0 1.9 37 48-94 114-150 (150)
2 4hcz_A PHD finger protein 1; p 12.2 1.8E+02 0.0061 21.8 3.2 32 291-322 9-47 (58)
3 1iv0_A Hypothetical protein; r 8.2 2.9E+02 0.0098 21.7 3.3 25 105-129 59-83 (98)
4 3oyy_A EF-P, elongation factor 7.8 4.7E+02 0.016 23.1 4.9 41 51-91 111-166 (191)
5 1ueb_A EF-P, TT0860, elongatio 7.8 5E+02 0.017 22.7 5.0 37 55-91 110-161 (184)
6 2y6h_A Xylanase, CBM4-2; hydro 6.7 2.8E+02 0.0096 23.9 2.7 49 278-330 34-87 (167)
7 1yby_A Translation elongation 6.2 5.9E+02 0.02 23.0 4.7 38 54-91 140-192 (215)
8 3qor_A Nuclear migration prote 6.1 8.1E+02 0.028 19.3 5.1 38 57-94 20-61 (121)
9 1rl1_A Suppressor of G2 allele 5.2 8.6E+02 0.03 18.4 4.6 15 56-70 12-26 (114)
10 3dh3_A Ribosomal large subunit 4.9 3.9E+02 0.013 24.7 2.8 25 125-149 187-213 (290)
No 1
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=15.70 E-value=65 Score=28.00 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=24.0
Q ss_pred CceecCceEEEEecCCCeeeeccccCCccceeEEEecCCcEEEEccc
Q 019224 48 PFQLAGPMELWIQDAKDMRISLPHDVDAGVLKKVVLADGAVVTVNGA 94 (344)
Q Consensus 48 ~f~L~GP~ELwi~~~~~~~L~LP~~vdag~LKrVlla~Ga~V~V~GA 94 (344)
--++++.+|+- -+||+.=-+ + .-|+|.||+++.+||+
T Consensus 114 qg~vE~~v~V~--vGDn~~~~m--~------~EIvv~DGvV~eIR~~ 150 (150)
T 4dci_A 114 QGQLESSCEIK--VGDNLVEKM--Q------VAIVVRDGVIQSIEEA 150 (150)
T ss_dssp EEEEEECCEEC--TTCBHHHHS--C------EEEEEETTEEEEEEC-
T ss_pred eceeeEEEEEe--cCCCHHHHc--C------cEEEEeCCEEEEeeCC
Confidence 34667777764 444542222 2 4689999999999996
No 2
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=12.24 E-value=1.8e+02 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.2
Q ss_pred EEEEEecCCceeeeeeeeecccc-------ccccccccc
Q 019224 291 EVLAKVDGEKVIPERVVQVNPFD-------VEDTVAPNV 322 (344)
Q Consensus 291 EVlAkVeg~kl~p~~V~qV~P~~-------~~dt~s~s~ 322 (344)
+||||-.+++.-+=.|++|+... ...+.+|..
T Consensus 9 dVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 9 DVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp EEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 79999999999999999997765 455666644
No 3
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=8.17 E-value=2.9e+02 Score=21.66 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCccchHHHHHHHHH
Q 019224 105 LPLPLNQSNNGFASGLLTLAEQLRH 129 (344)
Q Consensus 105 lpLpln~s~~~~~sgl~~la~~Lr~ 129 (344)
+|+-+||+.+..+--.-.|+++|..
T Consensus 59 lP~~mdGt~~~~~~~~~~f~~~L~~ 83 (98)
T 1iv0_A 59 LPLRTDLKESAQAGKVLPLVEALRA 83 (98)
T ss_dssp CCCCCCSSSCCCSSTTHHHHHHHHH
T ss_pred eccCCCCCcCHHHHHHHHHHHHHhc
Confidence 6777889888888888899999966
No 4
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=7.81 E-value=4.7e+02 Score=23.07 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred ecCceEEEEecCCCeeeeccccCC---------------ccceeEEEecCCcEEEE
Q 019224 51 LAGPMELWIQDAKDMRISLPHDVD---------------AGVLKKVVLADGAVVTV 91 (344)
Q Consensus 51 L~GP~ELwi~~~~~~~L~LP~~vd---------------ag~LKrVlla~Ga~V~V 91 (344)
+.|.+++..-+++.+.+.||..|. -++.|...|..|+.|.|
T Consensus 111 ~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~V 166 (191)
T 3oyy_A 111 MTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQV 166 (191)
T ss_dssp CCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTSCEEEE
T ss_pred CEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCCCEEEe
Confidence 445578888888899999995432 34789999999999887
No 5
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=7.76 E-value=5e+02 Score=22.71 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=30.2
Q ss_pred eEEEEecCCCeeeeccccC---------------CccceeEEEecCCcEEEE
Q 019224 55 MELWIQDAKDMRISLPHDV---------------DAGVLKKVVLADGAVVTV 91 (344)
Q Consensus 55 ~ELwi~~~~~~~L~LP~~v---------------dag~LKrVlla~Ga~V~V 91 (344)
++++..+++.+.+.||..| +-|+.|...|..|+.|.|
T Consensus 110 v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~V 161 (184)
T 1ueb_A 110 ALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQV 161 (184)
T ss_dssp EEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEE
T ss_pred EEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEEEe
Confidence 7778888888899999543 346889999999999987
No 6
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A
Probab=6.74 E-value=2.8e+02 Score=23.87 Aligned_cols=49 Identities=37% Similarity=0.518 Sum_probs=35.7
Q ss_pred cCccccceEEEeEEEEEEec---CCceeeeeeeee--ccccccccccccccccCcccc
Q 019224 278 EWRTKPETVKLHFEVLAKVD---GEKVIPERVVQV--NPFDVEDTVAPNVLLGNKTMS 330 (344)
Q Consensus 278 eWrTkP~~~R~~fEVlAkVe---g~kl~p~~V~qV--~P~~~~dt~s~s~L~sN~S~t 330 (344)
.--|.|-+ |||+-.-| |+|+.++-|.-+ +||.+.-|.-+-+.---++||
T Consensus 34 s~vtnppv----fev~e~~dap~g~kvlavtvng~gnnp~~i~ata~pvnv~pgvtyt 87 (167)
T 2y6h_A 34 SSVTNPPV----FEVLETSDAPEGNKVLAVTVNGVGNNPFNIQATALPVNVRPGVTYT 87 (167)
T ss_dssp TTCSSCCE----EEEEECTTCSSSSEEEEEECCCCCSSGGGEEEEEEEEECCTTCEEE
T ss_pred ccccCCCe----EEEEeccCCCCCceEEEEEeccCCCCCcceeeeeeeeeccCCceEE
Confidence 33577777 99998765 999999999988 888877766555544444443
No 7
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=6.23 E-value=5.9e+02 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=30.8
Q ss_pred ceEEEEecCCCeeeeccccC---------------CccceeEEEecCCcEEEE
Q 019224 54 PMELWIQDAKDMRISLPHDV---------------DAGVLKKVVLADGAVVTV 91 (344)
Q Consensus 54 P~ELwi~~~~~~~L~LP~~v---------------dag~LKrVlla~Ga~V~V 91 (344)
.++++.-+++.+.+.||..| +-|+.|...|..|++|.|
T Consensus 140 ~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA~leTG~~v~V 192 (215)
T 1yby_A 140 IVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKV 192 (215)
T ss_dssp EEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCEEEE
T ss_pred EEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCccEEEeCCcEEEe
Confidence 47778888888999999544 245889999999999987
No 8
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=6.10 E-value=8.1e+02 Score=19.34 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=26.7
Q ss_pred EEEecCCCeeeecccc----CCccceeEEEecCCcEEEEccc
Q 019224 57 LWIQDAKDMRISLPHD----VDAGVLKKVVLADGAVVTVNGA 94 (344)
Q Consensus 57 Lwi~~~~~~~L~LP~~----vdag~LKrVlla~Ga~V~V~GA 94 (344)
-|-|..+++.+.+|.. +.+-.++=-+=.+...|.++|.
T Consensus 20 ~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~ 61 (121)
T 3qor_A 20 RWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQ 61 (121)
T ss_dssp EEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTS
T ss_pred EEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCc
Confidence 6999999998887654 5555666555566667777773
No 9
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=5.16 E-value=8.6e+02 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=10.6
Q ss_pred EEEEecCCCeeeecc
Q 019224 56 ELWIQDAKDMRISLP 70 (344)
Q Consensus 56 ELwi~~~~~~~L~LP 70 (344)
=-|-|..+.+.|.++
T Consensus 12 ~~W~Qt~~~V~v~i~ 26 (114)
T 1rl1_A 12 YDWYQTESQVVITLM 26 (114)
T ss_dssp EEEEECSSEEEEEEC
T ss_pred ccEEeCCCEEEEEEE
Confidence 458898888855444
No 10
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=4.89 E-value=3.9e+02 Score=24.71 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHhhhhcCCCeeeE-EE-ecccee
Q 019224 125 EQLRHASRAQGAPLLSL-RI-VGPTSL 149 (344)
Q Consensus 125 ~~Lr~as~s~~~PLLsl-rI-VGp~sL 149 (344)
+|||.-..+.+.|++-| || +|+..|
T Consensus 187 HQIR~~~~~lG~pV~~L~R~~iG~l~L 213 (290)
T 3dh3_A 187 RQIRRMCEHFGYEVKKLERTRIMNVSL 213 (290)
T ss_dssp THHHHHHHHTTCCEEEEEEEEETTEEC
T ss_pred hHHHHHHHHcCCeEEEeEEEEECCEec
Confidence 49999999999999998 66 788777
Done!