Query 019224
Match_columns 344
No_of_seqs 33 out of 35
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019224.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019224hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t94a1 d.240.1.1 (A:411-515) 13.4 1.5E+02 0.011 20.4 5.3 59 82-145 41-100 (105)
2 d1vioa1 d.265.1.3 (A:58-231) R 11.6 64 0.0046 25.0 2.8 25 125-149 127-153 (174)
3 d2plsa1 d.145.1.4 (A:345-428) 8.9 1.3E+02 0.0098 20.6 3.4 22 287-309 62-83 (84)
4 d1kska4 d.265.1.3 (A:60-231) R 8.8 92 0.0067 24.3 2.8 25 125-149 125-151 (172)
5 d2mysa1 b.34.3.1 (A:34-79) Myo 7.8 1.6E+02 0.011 19.3 3.1 37 57-93 5-41 (46)
6 d1wfqa_ b.40.4.5 (A:) Cold sho 7.0 1.4E+02 0.01 21.3 2.9 30 281-310 55-84 (89)
7 d1sgva1 b.122.1.1 (A:236-292) 6.3 1.3E+02 0.0093 20.4 2.1 16 291-306 37-54 (57)
8 d1jdwa_ d.126.1.2 (A:) L-argin 6.1 1.1E+02 0.0083 24.4 2.0 17 70-86 2-20 (360)
9 d1noaa_ b.1.7.1 (A:) Neocarzin 6.0 87 0.0063 24.3 1.2 12 83-94 13-24 (113)
10 d1gjxa_ b.84.1.1 (A:) Lipoyl d 5.7 89 0.0065 21.8 1.0 17 75-91 52-68 (81)
No 1
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.44 E-value=1.5e+02 Score=20.41 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=35.2
Q ss_pred EecCCcEEEEccceeEeeecCCCCCCCCCCCCCCCccchHHHHHHHHHhhhhcCCC-eeeEEEec
Q 019224 82 VLADGAVVTVNGARSVSLRHPIDLPLPLNQSNNGFASGLLTLAEQLRHASRAQGAP-LLSLRIVG 145 (344)
Q Consensus 82 lla~Ga~V~V~GAr~VSLr~P~dlpLpln~s~~~~~sgl~~la~~Lr~as~s~~~P-LLslrIVG 145 (344)
+.+-.++|+||-+.==..++...++-|.+.. .-|+..|.+|-.-......| =.+||.+|
T Consensus 41 ~~~rtv~lkir~~df~~~trs~tl~~~t~~~-----~~i~~~a~~Ll~~~~~~~~~~~~~iRLlG 100 (105)
T d1t94a1 41 LKGRTVTIKLKNVNFEVKTRASTVSSVVSTA-----EEIFAIAKELLKTEIDADFPHPLRLRLMG 100 (105)
T ss_dssp CCCSCEEEEEEETTCCEEEECC-CCCCCCC-------CHHHHHHHHHHHHHSSSTTSCCCEEEEE
T ss_pred CCccEEEEEEEeCCCceeEEEEEcCccCCCH-----HHHHHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 3456778888887555566666666555433 33777777776554433322 25788877
No 2
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=11.62 E-value=64 Score=25.02 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.2
Q ss_pred HHHHHhhhhcCCCeeeE-EE-ecccee
Q 019224 125 EQLRHASRAQGAPLLSL-RI-VGPTSL 149 (344)
Q Consensus 125 ~~Lr~as~s~~~PLLsl-rI-VGp~sL 149 (344)
+|||....+-+.|++.| || .|+..|
T Consensus 127 hQIR~~~~~~g~pI~~L~Ri~~g~~~L 153 (174)
T d1vioa1 127 HQVKRMFAALGNKVVGLHRWKIGDVVL 153 (174)
T ss_dssp THHHHHHHHTTCCEEEEEEEEETTEEC
T ss_pred hHHHHHHHHcCCEEEEEEEEEEccccc
Confidence 49999999999999998 77 788655
No 3
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}
Probab=8.86 E-value=1.3e+02 Score=20.63 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=17.3
Q ss_pred EEeEEEEEEecCCceeeeeeeee
Q 019224 287 KLHFEVLAKVDGEKVIPERVVQV 309 (344)
Q Consensus 287 R~~fEVlAkVeg~kl~p~~V~qV 309 (344)
-+.|+|+ ++++.|++=++|.++
T Consensus 62 ~~~f~V~-~~~~~rI~~v~i~~l 83 (84)
T d2plsa1 62 NWRLEVI-DMDSKRIDKVLATKI 83 (84)
T ss_dssp TEEEEEE-EEETTEEEEEEEEEC
T ss_pred CEEEEEE-EeeCCeEEEEEEEEC
Confidence 4678887 788888888888776
No 4
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=8.81 E-value=92 Score=24.25 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred HHHHHhhhhcCCCeeeE-EE-ecccee
Q 019224 125 EQLRHASRAQGAPLLSL-RI-VGPTSL 149 (344)
Q Consensus 125 ~~Lr~as~s~~~PLLsl-rI-VGp~sL 149 (344)
+|||....+-+.|+..| || +|+-.|
T Consensus 125 ~qIR~~~~~lg~~V~~L~Rv~~G~~~L 151 (172)
T d1kska4 125 HQVKRMFAAVGNHVVELHRERIGGITL 151 (172)
T ss_dssp THHHHHHHHTTCCEEEEEEEEETTEEC
T ss_pred HHHHHHHHHcCCEEeEEEEEEEccEec
Confidence 39999999999999998 88 888765
No 5
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=7.78 E-value=1.6e+02 Score=19.33 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=20.4
Q ss_pred EEEecCCCeeeeccccCCccceeEEEecCCcEEEEcc
Q 019224 57 LWIQDAKDMRISLPHDVDAGVLKKVVLADGAVVTVNG 93 (344)
Q Consensus 57 Lwi~~~~~~~L~LP~~vdag~LKrVlla~Ga~V~V~G 93 (344)
.||.|.+++=+.==.-..-|+-=-|-..+|.+||||-
T Consensus 5 vwVpD~ke~yv~~~Iks~~GdkvTV~t~~G~tvtVk~ 41 (46)
T d2mysa1 5 VFVVHPKQSFVKGTIQSKEGGKVTVKTEGGETLTVKE 41 (46)
T ss_dssp EEEECSSSSEEEEEEEEECSSEEEECCSSSCCEEEEG
T ss_pred EEcccCcccEEEEEEEEccCCEEEEEECCCCEEEEeH
Confidence 6788777763322222223443334457788888864
No 6
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.00 E-value=1.4e+02 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=21.9
Q ss_pred cccceEEEeEEEEEEecCCceeeeeeeeec
Q 019224 281 TKPETVKLHFEVLAKVDGEKVIPERVVQVN 310 (344)
Q Consensus 281 TkP~~~R~~fEVlAkVeg~kl~p~~V~qV~ 310 (344)
+--.=+||.||+.---.++|..+++|+++.
T Consensus 55 ~l~~G~~VeF~v~~~~kg~k~~Av~V~~~~ 84 (89)
T d1wfqa_ 55 DLKVGDDVEFEVSSDRRTGKPIAVKLVKIS 84 (89)
T ss_dssp TCCTTCCEEEEEEECSSSCCEEEEEEEESS
T ss_pred cccCCCEEEEEEEECCCCCceEEEEEEECC
Confidence 334458999997554446888899998884
No 7
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.26 E-value=1.3e+02 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=11.1
Q ss_pred EEEEEec--CCceeeeee
Q 019224 291 EVLAKVD--GEKVIPERV 306 (344)
Q Consensus 291 EVlAkVe--g~kl~p~~V 306 (344)
+++|-+| |++.||+.|
T Consensus 37 ~~iALl~~~g~~akpv~V 54 (57)
T d1sgva1 37 RVIALLRDEGSRTRSVAV 54 (57)
T ss_dssp CEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEccCCccccEEE
Confidence 4677776 777777765
No 8
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.06 E-value=1.1e+02 Score=24.43 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=12.8
Q ss_pred cccC--CccceeEEEecCC
Q 019224 70 PHDV--DAGVLKKVVLADG 86 (344)
Q Consensus 70 P~~v--dag~LKrVlla~G 86 (344)
|-|+ .+|.||.|||+-.
T Consensus 2 ~vn~~sE~~~Lk~VivGr~ 20 (360)
T d1jdwa_ 2 PVSSYNEWDPLEEVIVGRA 20 (360)
T ss_dssp CCBBCBSSSCEEEEEECBC
T ss_pred CCccCcCcccCeEEEEecC
Confidence 4444 7999999999543
No 9
>d1noaa_ b.1.7.1 (A:) Neocarzinostatin {Streptomyces carzinostaticus [TaxId: 1897]}
Probab=6.03 E-value=87 Score=24.34 Aligned_cols=12 Identities=67% Similarity=0.999 Sum_probs=10.1
Q ss_pred ecCCcEEEEccc
Q 019224 83 LADGAVVTVNGA 94 (344)
Q Consensus 83 la~Ga~V~V~GA 94 (344)
|+||++|+|.|+
T Consensus 13 LsDGqtV~Vtgt 24 (113)
T d1noaa_ 13 LSDGTVVKVAGA 24 (113)
T ss_dssp CCTTCEEEEEEE
T ss_pred ccCCCEEEEEee
Confidence 589999999885
No 10
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Probab=5.70 E-value=89 Score=21.85 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.7
Q ss_pred ccceeEEEecCCcEEEE
Q 019224 75 AGVLKKVVLADGAVVTV 91 (344)
Q Consensus 75 ag~LKrVlla~Ga~V~V 91 (344)
.|.++++++.+|..|.+
T Consensus 52 ~G~i~~i~v~~G~~v~~ 68 (81)
T d1gjxa_ 52 AGVVKEVKVKVGDKISE 68 (81)
T ss_dssp SSBBCCCCCCSSCEECS
T ss_pred eEEEEEEEeCCCCEECC
Confidence 49999999999998764
Done!