BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019226
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 75/246 (30%)
Query: 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWD---PEFYDVLQ 119
S+ ++A+IFD DGV+ ++E + ++ R Q+ ++ D P F+
Sbjct: 1 SNAXVEAIIFDXDGVLFDTEKYY----------YDRRASFLGQKGISIDHLPPSFFI--- 47
Query: 120 NQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTER------YQQII 173
GG K W +N + D+ + L +++ T + Y+++I
Sbjct: 48 ----GGNTKQVW-------------ENILRDEYDKWDVSTLQEEYNTYKQNNPLPYKELI 90
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL-DCFLADC 232
P VL++++E K+ G ++ + S++ K+ + LE R +G D L+
Sbjct: 91 -------FPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEE----NRLQGFFDIVLS-- 137
Query: 233 QSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGL 292
G++ K+ KP+P IY+TA K+L + L++EDS G+
Sbjct: 138 ----------------------GEEFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGI 175
Query: 293 QAATRA 298
A A
Sbjct: 176 AAGVAA 181
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 101/278 (36%), Gaps = 65/278 (23%)
Query: 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNW---DPEFYDVLQNQIG 123
LQ +IFD DGVI ++ HLH QA+ + + D +SL D +LQ+
Sbjct: 5 LQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQH--- 61
Query: 124 GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEP-RP 182
GGK ++A+L K Y ++ TV P
Sbjct: 62 GGK-------------------EGDFNSQERAQLAYR----KNLLYVHSLRELTVNAVLP 98
Query: 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNGT 242
G+ L+ + +A V + S + + IL L E F F AD
Sbjct: 99 GIRSLLADLRAQQISVGLASVSLNAPTILAALEL--REFF----TFCADA---------- 142
Query: 243 LMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 302
+K KPDP I++ A LG+ + C+ +ED+ G+ A +GM
Sbjct: 143 -------------SQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRS 189
Query: 303 VITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNV 340
V T Q + P ++ L QNV
Sbjct: 190 VGIGAGLTGAQ------LLLPSTESLTWPRLSAFWQNV 221
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 88/239 (36%), Gaps = 53/239 (22%)
Query: 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGG 125
SL+A+IFD DGVI ++ H A+ ++ D +
Sbjct: 1 SLKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDXNE------------------- 41
Query: 126 KPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR-PGV 184
+++ +E S IF + K + K YQ +I T E PG+
Sbjct: 42 --RLKGISREESLESILIFGGAETKYTNAEK--QELXHRKNRDYQXLISKLTPEDLLPGI 97
Query: 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNGTLM 244
RL+ + K K+ + S++ + IL R +D F A L
Sbjct: 98 GRLLCQLKNENIKIGLASSSRNAPKIL--------RRLAIIDDFHAIVDPTTLA------ 143
Query: 245 PNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 303
+ KPDP I++TAA L +S DC +ED+ G+ A AG V
Sbjct: 144 ---------------KGKPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAGXFAV 187
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIG 123
S L+A++FD DGV+ +S H ++++ + + G
Sbjct: 20 SIDLKAVLFDXDGVLFDSXPNHAESWHK--------------------------IXKRFG 53
Query: 124 GGKPKMRWYFKEHGWPSSTI--FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR 181
G + Y E +STI D + I I KTE + + K+ E
Sbjct: 54 FGLSREEAYXHEGRTGASTINIVSRRERGHDATEEEIKAIYQAKTEEFNKCPKA---ERX 110
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNG 241
PG L ++ + K+ G V + + ++S++ L + F G+ F A+
Sbjct: 111 PGALEVLTKIKSEGLTPXVVTGSGQTSLLDRLNH-----NFPGI--FQAN---------- 153
Query: 242 TLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 301
+ V A DVK KP+P Y+ A K+ G + LV+E++ +G+QA AG+
Sbjct: 154 ------LXVTAF---DVKYGKPNPEPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIF 204
Query: 302 CVITYTS 308
+ T
Sbjct: 205 TIAVNTG 211
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 56/242 (23%)
Query: 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKP 127
+A+IFD DGV+ ++E L+ +AY R S + D L +I G
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYR--------RVAESYGKPYTED------LHRRIXGVPE 47
Query: 128 KMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRL 187
+ G P I D + + K + +++K PGV
Sbjct: 48 R-------EGLP---ILXEALEIKDSLENFKKRVHEEKKRVFSELLKEN-----PGVREA 92
Query: 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNGTLMPNR 247
++ K+ K+A+ ++ + + L L +E++ + F
Sbjct: 93 LEFVKSKRIKLALATSTPQREALERLRRL-DLEKYFDVXVF------------------- 132
Query: 248 VCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 307
GD VK KPDP IY+ +RL + + +V EDS G++AA AG+ +
Sbjct: 133 -------GDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVV 185
Query: 308 SS 309
S
Sbjct: 186 HS 187
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 55/243 (22%)
Query: 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQI 122
S+ ++A IFD DGVI ++ + H A+ + D +SL
Sbjct: 22 SNAMIEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLK------------- 68
Query: 123 GGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTV-EPR 181
G +M F N + ++ K+ + + K Y +I T +
Sbjct: 69 --GISRME------SLDRILEFGNKKYSFSEEEKV--RMAEEKNNYYVSLIDEITSNDIL 118
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM-ERFEGLDCFLADCQSYVLMTN 240
PG+ L+ + K+ K+ + SA+ + +L N +G+ ++F+ F+AD
Sbjct: 119 PGIESLLIDVKSNNIKIGLSSASKNAINVL---NHLGISDKFD----FIADAGK------ 165
Query: 241 GTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGM 300
C K KP P I++ +AK L ++ ++C+ +ED+ G+ A A M
Sbjct: 166 ----------C-------KNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANM 208
Query: 301 ACV 303
V
Sbjct: 209 FSV 211
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 65/277 (23%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQ 233
E PG L+ + K+ G V + + + S++ LE+ F G+
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-----NFPGM-------- 150
Query: 234 SYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQ 293
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G++
Sbjct: 151 ----------FHKELMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVE 197
Query: 294 AATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
A +AG+ + T Q DA A ++P + +
Sbjct: 198 AGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 71/280 (25%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPE----- 113
R S + L+A++FD DGV+ S H +A++ + D S +++ D
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGL--DLSREEAYMHDGRTGAST 73
Query: 114 FYDVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQ 171
V Q ++G + ++ + E S +F++ P
Sbjct: 74 INIVFQRELGKEATQEEIESIYHE----KSILFNSYP----------------------- 106
Query: 172 IIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLA 230
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 107 -----EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE------- 154
Query: 231 DCQSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 290
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +
Sbjct: 155 -----------------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPL 194
Query: 291 GLQAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
G++A +AG+ + T Q DA A ++P + +
Sbjct: 195 GVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 105/278 (37%), Gaps = 67/278 (24%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHNGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLADC 232
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE--------- 154
Query: 233 QSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGL 292
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G+
Sbjct: 155 ---------------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 293 QAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
+A +AG+ + T Q DA A ++P + +
Sbjct: 197 EAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 105/278 (37%), Gaps = 67/278 (24%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHAGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLADC 232
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE--------- 154
Query: 233 QSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGL 292
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G+
Sbjct: 155 ---------------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 293 QAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
+A +AG+ + T Q DA A ++P + +
Sbjct: 197 EAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 67/278 (24%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++F+ DGV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFNMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLADC 232
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE--------- 154
Query: 233 QSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGL 292
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G+
Sbjct: 155 ---------------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 293 QAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
+A +AG+ + T Q DA A ++P + +
Sbjct: 197 EAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 67/278 (24%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD +GV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFDMNGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLADC 232
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE--------- 154
Query: 233 QSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGL 292
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G+
Sbjct: 155 ---------------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 293 QAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
+A +AG+ + T Q DA A ++P + +
Sbjct: 197 EAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G F+
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY--FD 133
Query: 224 GLDCFLADCQSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCL 283
+ AD P V KP P I++ AA +G++ + +
Sbjct: 134 AI----AD-------------PAEVAAS----------KPAPDIFIAAAHAVGVAPSESI 166
Query: 284 VVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 338
+EDS G+QA +G + +D D I I PD S+ L+ L E+ LQ
Sbjct: 167 GLEDSQAGIQAIKDSGALPI----GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G F+
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY--FD 133
Query: 224 GLDCFLADCQSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCL 283
+ AD P V KP P I++ AA +G++ + +
Sbjct: 134 AI----AD-------------PAEVAAS----------KPAPDIFIAAAHAVGVAPSESI 166
Query: 284 VVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 338
+EDS G+QA +G + +D D I I PD S+ L+ L E+ LQ
Sbjct: 167 GLEDSQAGIQAIKDSGALPI----GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G F+
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY--FD 133
Query: 224 GLDCFLADCQSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCL 283
+ AD P V KP P I++ AA +G++ + +
Sbjct: 134 AI----AD-------------PAEVAAS----------KPAPDIFIAAAHAVGVAPSESI 166
Query: 284 VVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 338
+EDS G+QA +G + +D D I I PD S+ L+ L E+ LQ
Sbjct: 167 GLEDSQAGIQAIKDSGALPI----GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLADCQSYVL 237
E PG L+ + K+ G V + + + S++ LE N GM E
Sbjct: 109 ERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE-------------- 154
Query: 238 MTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR 297
+ V A DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +
Sbjct: 155 ----------LMVTAF---DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHK 201
Query: 298 AGMACVITYTSSTAEQDFKDAIA--IYPDLSNV 328
AG+ + T Q DA A ++P + +
Sbjct: 202 AGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 255 GDD--VKQKKPDPSIYVTAAKRLGI--SEKDCLVVEDSVIGLQAATRAGMACVIT 305
GDD V+ KPDP I++ AKR + + CLV ED+ G++AA AGM V+
Sbjct: 162 GDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMV 216
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 60 VSASSQSLQALIFDCDGVIIESEHLHRQAYND 91
++A Q + LIFD DG+++++E L+ + +
Sbjct: 23 MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQE 54
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 256 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR--AGMACVITYTSSTAEQ 313
DDV KPDP +++ AAK++G +CLV+ D++ AA R A +++ E
Sbjct: 141 DDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDXLAARRCKATGVGLLSGGYDIGEL 200
Query: 314 DFKDAIAIYPD 324
+ A+ +Y D
Sbjct: 201 ERAGALRVYED 211
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 199 AVCSAATKSSVILCLENLIGMER-FEGLDCFLA-DCQSYVLMTNGTLMPNRVCVCAHQGD 256
A+ +A ++ + N G+ R + G F A + + L+ + + V CA+
Sbjct: 64 AIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDXVLACAYHEA 123
Query: 257 DV--------KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 308
V +KP+P V A KRL + + L+V D + QA RAG+A
Sbjct: 124 GVGPLAIPDHPXRKPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGLAQGWLVDG 183
Query: 309 STAEQDFKDAIAIYPDLSNVRLKDL 333
A Q AI P + L DL
Sbjct: 184 EAAVQ---PGFAIRPLRDSSELGDL 205
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNG 241
PGVL +D AAG ++A+ ++ + + E GLD
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAE-------LTGLD--------------- 144
Query: 242 TLMPNRVCVCAHQGDD-VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGM 300
R+ V A GDD V++ KP P + + A+ LGI + C+V+ D V + AGM
Sbjct: 145 ----TRLTVIA--GDDSVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGM 198
Query: 301 ACV-ITYTSSTAEQ 313
+ ++Y S ++
Sbjct: 199 TVIGVSYGVSGPDE 212
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 262 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 310
KP P I++ A + G+S +VVEDSV G+ A AG VI +T ++
Sbjct: 143 KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGXR-VIGFTGAS 190
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 46/234 (19%)
Query: 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDV-----LQNQI 122
+A IFD DG I+++ A N AF R D + + N+ V L +
Sbjct: 5 KAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEA 64
Query: 123 GGGKPKMRWY-FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR 181
G + + + K+ P + VT + +++++ + + + Q IK+G P
Sbjct: 65 GSSRESLVAFGTKDEQIPEA-------VTQTEVNRVLEVFKPYYADHCQ--IKTG---PF 112
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNG 241
PG+L L + G K+AV S +V + +E L F G F +S +
Sbjct: 113 PGILDLXKNLRQKGVKLAVVSNKPNEAVQVLVEEL-----FPGSFDFALGEKSGI----- 162
Query: 242 TLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAA 295
++KP P K LG+ C+ + DS I +Q A
Sbjct: 163 ------------------RRKPAPDXTSECVKVLGVPRDKCVYIGDSEIDIQTA 198
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 55/221 (24%)
Query: 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK 128
A++FD DGV++ESE + Q + + + D ++ ++ + + +D +
Sbjct: 30 AVLFDLDGVLVESEGIIAQVWQSVLAERGLHLD-LTEIAMYFTGQRFDGV---------- 78
Query: 129 MRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLM 188
+ + ++H F PP D + +T + +E LR +
Sbjct: 79 LAYLAQQHD------FVPPP----------DFLDVLETRFNAAMTGVTAIEGAAETLRAL 122
Query: 189 DEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLADCQSYVLMTNGTLMPNRV 248
+AAG A+ S + + + L L + G+ G + P+ V
Sbjct: 123 ---RAAGVPFAIGSNSERGRLHLKL-RVAGLTELAGEHIY---------------DPSWV 163
Query: 249 CVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 289
+ KP P +Y AA++LGI + C+V+EDSV
Sbjct: 164 G---------GRGKPHPDLYTFAAQQLGILPERCVVIEDSV 195
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 236 VLMTNGTLMPNR--VCVCAHQ--------GDDVKQKKPDPSIYVTAAKRLGISEKDCLVV 285
+L+TNG R + CA Q G + K++KP PSI+ LG+ DC++V
Sbjct: 140 LLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMV 199
Query: 286 EDSV-IGLQAATRAGMACVI 304
D++ +Q AG+ +
Sbjct: 200 GDTLETDIQGGLNAGLKATV 219
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 236 VLMTNGTLMPNR----VCVCAHQGDDV------KQKKPDPSIYVTAAKRLGISEKDCLVV 285
+L+TNG R C C D V +++KP PSI+ LG+ DC++V
Sbjct: 150 LLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGDCVMV 209
Query: 286 EDSV-IGLQAATRAGMACVI 304
D++ +Q AG+ +
Sbjct: 210 GDTLETDIQGGLNAGLKATV 229
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 246 NRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 303
+RV DD+K KPDP IY A RLG++ + V + L A + G V
Sbjct: 145 DRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTV 202
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 246 NRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 303
+RV DD+K KPDP IY A RLG++ + V + L A + G V
Sbjct: 145 DRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTV 202
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 255 GDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD 314
G+DV KPDP + A RL ++ L + DS + A AG++ + T Q+
Sbjct: 138 GEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGXTTAQE 197
Query: 315 FK 316
F+
Sbjct: 198 FQ 199
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 262 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 321
KP P +Y+ A +LG+ C+ +EDSV G A++A I + A+ D + +A
Sbjct: 150 KPHPQVYLDCAAKLGVDPLTCVALEDSVNG-XIASKAARXRSIVVPAPEAQNDPRFVLA- 207
Query: 322 YPDLSNVRLKDL-ELLLQNVVAAS 344
NV+L L EL ++++ S
Sbjct: 208 -----NVKLSSLTELTAKDLLGGS 226
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 257 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 312
++K KP+P I+ + GI K+ ++DS I + A G++ TYT E
Sbjct: 168 EMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIS---TYTPKAGE 220
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 257 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 312
++K KP+P I+ + GI K+ ++DS I + A G++ TYT E
Sbjct: 168 EMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIS---TYTPKAGE 220
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 77/248 (31%)
Query: 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGG 125
SL+ ++FD DG +I+S A + A + + + L + + D + IGGG
Sbjct: 2 SLRVILFDLDGTLIDS------AKDIALAL------EKTLKELGLEEYYPDNVTKYIGGG 49
Query: 126 KPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVE------ 179
+A L +++D E Y ++ + +E
Sbjct: 50 V---------------------------RALLEKVLKDKFREEYVEVFRKHYLENPVVYT 82
Query: 180 -PRPGVLRLMDEAKAAGKKVAVCSAATK--SSVILCLENLIGMERFEGLDCFLADCQSYV 236
P P + ++ K+ G K+AV S + S IL + NL G D +
Sbjct: 83 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGY-----FDLIVG------ 131
Query: 237 LMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAAT 296
GD +KKP P+ + + LG + L+V D+ ++A
Sbjct: 132 ------------------GDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGK 173
Query: 297 RAGMACVI 304
RAG +
Sbjct: 174 RAGTKTAL 181
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 255 GDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGM 300
DD ++KPDP +TA +++ ++ ++ L + DSV Q A A +
Sbjct: 131 ADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANV 176
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 261 KKPDPSIYVTAAKRLGISEKDCLVVEDSVIG-LQAATRAGMACVITYTSSTAEQDFKDAI 319
KKP P I+ A K + ++ L+V D + + A R GM V +E++ +
Sbjct: 149 KKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELE--- 205
Query: 320 AIYPDLSNVRLKDLELLLQNVVAAS 344
Y ++ + +LE LL+ + S
Sbjct: 206 --YRKYADYEIDNLESLLEVLARES 228
>pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHH|A Chain A, 7 Alpha-hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1AHH|B Chain B, 7 Alpha-hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1FMC|B Chain B, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
Length = 255
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 77 VIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEF-------YDVLQNQIGGGKPK 128
V+ E + L QA F RCD +S+Q L+ +F D+L N GGG PK
Sbjct: 51 VVDEIQQLGGQA-------FACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK 102
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 38/160 (23%)
Query: 154 QAKLIDLIQDWKTERYQQIIKSGTVE-------PRPGVLRLMDEAKAAGKKVAVCSAATK 206
+A L +++D E Y ++ + +E P P + ++ K+ G K+AV S +
Sbjct: 49 RALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLE 108
Query: 207 --SSVILCLENLIGMERFEGLDCFLADCQSYVLMTNGTLMPNRVCVCAHQGDDVKQKKPD 264
S IL + NL G D + GD +KKP
Sbjct: 109 ELSKKILDILNLSGY-----FDLIVG------------------------GDTFGEKKPS 139
Query: 265 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 304
P+ + + LG + L+V D+ ++A RAG +
Sbjct: 140 PTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179
>pdb|3L8H|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|C Chain C, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|D Chain D, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
Length = 179
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 251 CAHQGDD-VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS- 308
C H DD +KP P Y A+R + V DS+ LQAA +AG A + T
Sbjct: 89 CPHGPDDGCACRKPLPGXYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGN 148
Query: 309 ---STAEQDFKDAIAIYPDLSNVRLKDLELLLQ 338
+ A+ + + DL+ V E LLQ
Sbjct: 149 GRKTLAQGGLPEGTRVCEDLAAV----AEQLLQ 177
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 255 GDDVKQK-KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 304
G D+ +K KPDP Y+ A+ LG+ + ++ L+AA G+A
Sbjct: 161 GSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGLATAF 211
>pdb|2PR7|A Chain A, Crystal Structure Of Uncharacterized Protein (Np_599989.1)
From Corynebacterium Glutamicum Atcc 13032 Kitasato At
1.44 A Resolution
pdb|2PR7|B Chain B, Crystal Structure Of Uncharacterized Protein (Np_599989.1)
From Corynebacterium Glutamicum Atcc 13032 Kitasato At
1.44 A Resolution
Length = 137
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 237 LMTNGTLMPNRVCVCAHQGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAAT 296
L TNG + ++V + G +KP+ + + AA + + +DC++V+DS++ ++ A
Sbjct: 55 LETNGVV--DKVLLSGELG----VEKPEEAAFQAAADAIDLPXRDCVLVDDSILNVRGAV 108
Query: 297 RAGMACV 303
AG+ V
Sbjct: 109 EAGLVGV 115
>pdb|3Q22|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q22|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q23|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q23|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q0A|A Chain A, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|3Q0A|B Chain B, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|4FF1|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF1|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
Length = 1118
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 271 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 321
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 143 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 193
>pdb|3C2P|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C2P|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C3L|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C3L|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C46|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3C46|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3Q24|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
pdb|3Q24|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
Length = 1117
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 271 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 321
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 143 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 193
>pdb|2PO4|A Chain A, X-Ray Crystal Structure Of Polymerase Domain Of The
Bacteriophage N4 Virion Rna Polymerase
Length = 1104
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 271 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 321
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 131 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 181
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 258 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKD 317
V KP+P IY L S + + ++D L+ A GM ++ + TA ++ +
Sbjct: 156 VGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDTDTALKELEK 215
Query: 318 AIAI 321
I
Sbjct: 216 VTGI 219
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 107 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166
Query: 218 GMER 221
M R
Sbjct: 167 AMTR 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,091,596
Number of Sequences: 62578
Number of extensions: 355903
Number of successful extensions: 871
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 81
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)