Query 019227
Match_columns 344
No_of_seqs 276 out of 1821
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 5.6E-50 1.2E-54 405.1 18.1 294 10-339 192-496 (634)
2 KOG0782 Predicted diacylglycer 100.0 3.2E-46 7E-51 367.8 9.1 272 29-342 301-585 (1004)
3 PRK12361 hypothetical protein; 100.0 3.6E-34 7.7E-39 295.2 15.1 217 16-296 167-395 (547)
4 PRK00861 putative lipid kinase 100.0 3.5E-30 7.5E-35 246.7 14.4 166 80-320 2-167 (300)
5 PRK11914 diacylglycerol kinase 100.0 8.2E-30 1.8E-34 244.8 16.3 173 79-320 7-179 (306)
6 COG1597 LCB5 Sphingosine kinas 100.0 1.2E-29 2.5E-34 243.6 14.0 169 80-320 2-171 (301)
7 PRK13055 putative lipid kinase 100.0 1.8E-29 4E-34 245.5 14.4 154 80-295 2-156 (334)
8 PRK13059 putative lipid kinase 100.0 2.1E-29 4.5E-34 241.1 14.1 168 80-320 1-168 (295)
9 PRK13337 putative lipid kinase 100.0 4E-29 8.6E-34 240.0 13.6 150 80-293 1-150 (304)
10 PRK13057 putative lipid kinase 100.0 5.8E-29 1.3E-33 236.9 14.3 160 84-320 1-160 (287)
11 PLN02958 diacylglycerol kinase 100.0 8.4E-29 1.8E-33 251.2 14.9 177 78-319 109-290 (481)
12 TIGR03702 lip_kinase_YegS lipi 100.0 1.7E-28 3.7E-33 234.4 13.5 167 82-320 1-167 (293)
13 PRK13054 lipid kinase; Reviewe 100.0 6.6E-28 1.4E-32 231.1 14.4 168 79-319 2-170 (300)
14 TIGR00147 lipid kinase, YegS/R 99.9 7.3E-27 1.6E-31 222.7 14.0 168 80-319 1-169 (293)
15 PLN02204 diacylglycerol kinase 99.9 6.7E-26 1.4E-30 231.3 15.8 182 75-299 154-402 (601)
16 KOG1116 Sphingosine kinase, in 99.9 5.3E-25 1.2E-29 221.2 11.9 245 21-318 116-377 (579)
17 PF00781 DAGK_cat: Diacylglyce 99.9 2.3E-23 5E-28 176.0 13.1 125 82-230 1-127 (130)
18 KOG1170 Diacylglycerol kinase 99.9 2.7E-25 5.9E-30 226.8 -2.4 184 12-230 136-323 (1099)
19 smart00046 DAGKc Diacylglycero 99.9 1.1E-21 2.5E-26 164.9 12.0 101 84-201 1-101 (124)
20 KOG1115 Ceramide kinase [Lipid 99.7 1.8E-16 3.9E-21 153.2 8.7 175 74-299 152-338 (516)
21 PF00609 DAGK_acc: Diacylglyce 99.5 1.2E-15 2.5E-20 134.0 -1.0 67 274-341 1-67 (161)
22 KOG4435 Predicted lipid kinase 99.4 1.7E-12 3.7E-17 125.7 11.5 138 74-228 54-196 (535)
23 PRK03708 ppnK inorganic polyph 98.5 8E-07 1.7E-11 84.8 11.6 123 81-232 1-124 (277)
24 smart00045 DAGKa Diacylglycero 98.5 9.6E-08 2.1E-12 83.6 3.1 66 274-340 1-66 (160)
25 PRK02645 ppnK inorganic polyph 98.4 3.8E-06 8.2E-11 81.2 12.1 126 79-233 2-128 (305)
26 COG3199 Predicted inorganic po 98.0 2.8E-05 6E-10 75.3 10.0 57 147-220 100-157 (355)
27 PRK03378 ppnK inorganic polyph 97.9 0.00018 4E-09 69.1 12.0 124 79-232 4-131 (292)
28 PRK01231 ppnK inorganic polyph 97.7 0.00052 1.1E-08 66.1 13.0 129 79-233 3-131 (295)
29 PF01513 NAD_kinase: ATP-NAD k 97.5 0.00057 1.2E-08 65.4 9.2 70 146-232 75-144 (285)
30 PRK14077 pnk inorganic polypho 97.3 0.0057 1.2E-07 58.8 13.9 126 78-233 8-133 (287)
31 PRK03372 ppnK inorganic polyph 97.2 0.0076 1.7E-07 58.4 13.6 126 78-232 3-140 (306)
32 PRK02155 ppnK NAD(+)/NADH kina 97.1 0.0081 1.8E-07 57.8 13.1 128 80-233 5-132 (291)
33 PRK04539 ppnK inorganic polyph 97.1 0.0074 1.6E-07 58.2 12.4 129 79-233 4-137 (296)
34 PRK02649 ppnK inorganic polyph 97.0 0.014 3E-07 56.6 13.2 131 80-233 1-137 (305)
35 PRK01911 ppnK inorganic polyph 97.0 0.015 3.3E-07 56.0 13.3 124 81-233 1-133 (292)
36 PRK03501 ppnK inorganic polyph 96.9 0.017 3.8E-07 54.8 12.5 107 80-232 2-109 (264)
37 PLN02935 Bifunctional NADH kin 96.8 0.022 4.8E-07 58.4 13.4 134 79-232 193-330 (508)
38 PRK14076 pnk inorganic polypho 96.1 0.1 2.3E-06 54.8 13.6 124 79-231 289-415 (569)
39 PRK00561 ppnK inorganic polyph 96.1 0.12 2.6E-06 48.9 12.6 69 147-232 33-102 (259)
40 PRK14075 pnk inorganic polypho 95.9 0.21 4.5E-06 47.2 13.6 107 81-233 1-107 (256)
41 PRK04885 ppnK inorganic polyph 95.8 0.15 3.2E-06 48.5 12.1 103 82-231 2-104 (265)
42 PLN02727 NAD kinase 95.3 0.17 3.6E-06 55.4 11.7 116 78-222 676-801 (986)
43 PRK01185 ppnK inorganic polyph 94.7 0.63 1.4E-05 44.4 12.6 117 82-233 2-118 (271)
44 COG0061 nadF NAD kinase [Coenz 94.3 0.78 1.7E-05 43.9 12.5 72 146-234 54-125 (281)
45 PLN02929 NADH kinase 94.0 0.31 6.7E-06 47.2 9.1 77 146-233 63-150 (301)
46 PRK02231 ppnK inorganic polyph 93.8 0.39 8.4E-06 45.9 9.2 69 147-232 42-111 (272)
47 PRK04761 ppnK inorganic polyph 91.9 0.25 5.4E-06 46.5 4.9 36 146-188 24-59 (246)
48 KOG4180 Predicted kinase [Gene 86.9 0.62 1.3E-05 45.3 3.4 76 145-234 103-180 (395)
49 KOG2178 Predicted sugar kinase 83.2 2.2 4.9E-05 42.5 5.4 69 146-231 167-235 (409)
50 cd08171 GlyDH-like2 Glycerol d 81.4 7.7 0.00017 38.0 8.6 92 81-192 23-118 (345)
51 cd08186 Fe-ADH8 Iron-containin 81.3 8.4 0.00018 38.3 8.9 104 80-195 26-146 (383)
52 cd08194 Fe-ADH6 Iron-containin 81.2 10 0.00022 37.6 9.4 101 80-193 23-139 (375)
53 cd08172 GlyDH-like1 Glycerol d 81.2 9.8 0.00021 37.2 9.2 92 81-193 24-117 (347)
54 cd08170 GlyDH Glycerol dehydro 80.9 10 0.00023 37.0 9.3 94 81-194 23-119 (351)
55 cd08197 DOIS 2-deoxy-scyllo-in 80.6 5 0.00011 39.7 7.0 99 81-191 24-125 (355)
56 PF00731 AIRC: AIR carboxylase 79.0 13 0.00029 32.3 8.2 80 92-189 8-89 (150)
57 cd08181 PPD-like 1,3-propanedi 78.7 14 0.00029 36.5 9.3 103 81-195 26-143 (357)
58 COG1454 EutG Alcohol dehydroge 77.5 14 0.00029 37.1 8.9 108 79-199 28-151 (377)
59 cd08183 Fe-ADH2 Iron-containin 76.9 16 0.00035 36.1 9.3 98 81-194 23-139 (374)
60 cd08187 BDH Butanol dehydrogen 74.9 18 0.00039 35.9 9.1 103 81-195 29-147 (382)
61 cd08169 DHQ-like Dehydroquinat 74.4 12 0.00025 36.9 7.5 97 80-191 23-124 (344)
62 cd08185 Fe-ADH1 Iron-containin 74.2 21 0.00045 35.4 9.3 104 81-196 26-150 (380)
63 cd08189 Fe-ADH5 Iron-containin 74.1 21 0.00046 35.3 9.3 103 80-195 26-145 (374)
64 cd08176 LPO Lactadehyde:propan 73.8 19 0.0004 35.7 8.9 103 81-196 29-147 (377)
65 cd07766 DHQ_Fe-ADH Dehydroquin 73.6 12 0.00026 36.2 7.3 92 80-189 23-117 (332)
66 PF10254 Pacs-1: PACS-1 cytoso 72.2 5.5 0.00012 40.2 4.6 50 148-198 76-128 (414)
67 cd08173 Gro1PDH Sn-glycerol-1- 72.0 27 0.00058 34.1 9.4 87 80-187 25-111 (339)
68 cd08192 Fe-ADH7 Iron-containin 71.9 25 0.00054 34.7 9.2 100 81-193 25-144 (370)
69 cd08179 NADPH_BDH NADPH-depend 71.6 21 0.00046 35.3 8.7 103 81-195 24-145 (375)
70 cd08191 HHD 6-hydroxyhexanoate 71.4 24 0.00051 35.2 9.0 102 81-195 23-140 (386)
71 TIGR03405 Phn_Fe-ADH phosphona 69.8 33 0.00071 33.8 9.5 104 81-195 24-145 (355)
72 TIGR02638 lactal_redase lactal 69.7 27 0.00059 34.6 9.0 104 80-196 29-150 (379)
73 cd08180 PDD 1,3-propanediol de 69.3 19 0.00042 34.9 7.7 99 81-192 23-125 (332)
74 cd08195 DHQS Dehydroquinate sy 68.9 15 0.00032 36.0 6.8 95 80-186 24-119 (345)
75 PRK10624 L-1,2-propanediol oxi 68.4 32 0.00069 34.2 9.2 104 80-196 30-151 (382)
76 PRK09860 putative alcohol dehy 67.9 38 0.00081 33.8 9.6 106 80-198 31-152 (383)
77 PRK15454 ethanol dehydrogenase 67.7 32 0.00069 34.5 9.0 106 80-198 49-170 (395)
78 PRK09423 gldA glycerol dehydro 67.6 44 0.00095 32.9 9.9 94 81-194 30-126 (366)
79 cd08174 G1PDH-like Glycerol-1- 67.4 34 0.00073 33.2 9.0 33 147-186 75-107 (331)
80 PRK00002 aroB 3-dehydroquinate 66.5 18 0.00038 35.6 6.9 97 80-191 31-133 (358)
81 cd08177 MAR Maleylacetate redu 65.6 29 0.00063 33.8 8.1 90 81-190 24-114 (337)
82 PRK06203 aroB 3-dehydroquinate 65.2 47 0.001 33.3 9.7 100 79-186 41-145 (389)
83 TIGR02482 PFKA_ATP 6-phosphofr 64.8 18 0.00039 35.1 6.4 45 147-198 91-138 (301)
84 cd08178 AAD_C C-terminal alcoh 63.8 35 0.00077 34.0 8.5 75 80-167 21-97 (398)
85 PTZ00286 6-phospho-1-fructokin 63.0 19 0.0004 37.1 6.4 51 147-199 176-229 (459)
86 PRK06756 flavodoxin; Provision 62.8 42 0.00091 28.2 7.7 30 80-111 1-30 (148)
87 PRK15138 aldehyde reductase; P 61.9 42 0.00091 33.5 8.6 104 81-196 30-150 (387)
88 cd08549 G1PDH_related Glycerol 61.8 29 0.00064 33.7 7.4 88 80-186 24-112 (332)
89 cd08198 DHQS-like2 Dehydroquin 61.6 68 0.0015 32.0 9.9 99 80-186 30-133 (369)
90 TIGR01357 aroB 3-dehydroquinat 61.5 27 0.00058 34.1 7.0 94 81-186 21-115 (344)
91 cd08190 HOT Hydroxyacid-oxoaci 61.2 48 0.001 33.4 9.0 103 80-195 23-147 (414)
92 cd08188 Fe-ADH4 Iron-containin 61.1 61 0.0013 32.1 9.6 102 80-194 28-145 (377)
93 TIGR02483 PFK_mixed phosphofru 59.8 21 0.00045 35.0 5.9 44 147-198 94-140 (324)
94 cd08550 GlyDH-like Glycerol_de 59.4 46 0.001 32.5 8.3 93 81-193 23-118 (349)
95 PF00465 Fe-ADH: Iron-containi 58.1 31 0.00067 33.9 6.9 104 82-198 23-143 (366)
96 cd00363 PFK Phosphofructokinas 57.7 23 0.0005 34.8 5.8 44 147-193 92-136 (338)
97 PLN02834 3-dehydroquinate synt 57.2 85 0.0018 32.0 10.0 95 80-187 100-198 (433)
98 PF00782 DSPc: Dual specificit 56.5 5.7 0.00012 32.7 1.2 33 16-48 65-98 (133)
99 PLN02564 6-phosphofructokinase 56.3 19 0.0004 37.3 5.0 50 147-198 176-228 (484)
100 PRK06830 diphosphate--fructose 55.7 26 0.00056 35.9 5.9 50 147-198 172-224 (443)
101 cd00763 Bacterial_PFK Phosphof 55.6 26 0.00057 34.1 5.8 45 146-198 91-138 (317)
102 cd08551 Fe-ADH iron-containing 55.2 67 0.0015 31.5 8.7 102 80-194 23-140 (370)
103 PLN00180 NDF6 (NDH-dependent f 54.7 2.6 5.6E-05 36.7 -1.2 15 151-165 128-142 (180)
104 PF13685 Fe-ADH_2: Iron-contai 53.7 53 0.0011 30.9 7.3 94 80-191 19-112 (250)
105 PRK14071 6-phosphofructokinase 52.7 34 0.00073 34.0 6.1 45 147-198 107-154 (360)
106 PRK03202 6-phosphofructokinase 52.2 31 0.00068 33.7 5.7 44 147-198 93-139 (320)
107 cd08182 HEPD Hydroxyethylphosp 52.0 1.2E+02 0.0025 29.9 9.8 97 80-192 23-139 (367)
108 cd08175 G1PDH Glycerol-1-phosp 51.8 1.3E+02 0.0028 29.3 10.1 88 80-186 23-112 (348)
109 PRK00843 egsA NAD(P)-dependent 51.0 1.1E+02 0.0024 29.9 9.5 86 81-187 35-120 (350)
110 TIGR01162 purE phosphoribosyla 50.9 1.1E+02 0.0023 27.0 8.2 75 97-189 11-87 (156)
111 PRK10586 putative oxidoreducta 50.3 1.2E+02 0.0025 30.1 9.5 87 81-189 35-121 (362)
112 cd08184 Fe-ADH3 Iron-containin 50.2 1.2E+02 0.0025 29.9 9.4 49 147-196 81-143 (347)
113 smart00195 DSPc Dual specifici 48.9 8.3 0.00018 32.0 1.0 33 16-48 70-103 (138)
114 PRK14021 bifunctional shikimat 48.4 86 0.0019 32.9 8.6 36 146-186 268-303 (542)
115 cd08199 EEVS 2-epi-5-epi-valio 48.0 63 0.0014 31.9 7.2 96 79-186 25-122 (354)
116 PRK06555 pyrophosphate--fructo 47.9 36 0.00078 34.4 5.5 44 147-193 112-156 (403)
117 COG2453 CDC14 Predicted protei 47.0 8.7 0.00019 34.1 0.9 34 15-48 96-130 (180)
118 COG0337 AroB 3-dehydroquinate 46.0 1.6E+02 0.0035 29.4 9.5 97 77-186 30-128 (360)
119 cd00764 Eukaryotic_PFK Phospho 45.4 82 0.0018 34.6 8.0 46 147-193 478-523 (762)
120 cd08193 HVD 5-hydroxyvalerate 45.2 1.5E+02 0.0032 29.3 9.4 102 80-194 26-143 (376)
121 PRK14072 6-phosphofructokinase 43.5 41 0.0009 34.1 5.2 50 147-198 103-155 (416)
122 PRK09267 flavodoxin FldA; Vali 42.4 1.8E+02 0.0039 24.9 8.5 27 81-109 2-28 (169)
123 PRK00536 speE spermidine synth 40.6 20 0.00044 34.0 2.3 18 147-164 73-91 (262)
124 PLN02884 6-phosphofructokinase 40.1 48 0.001 33.6 5.0 50 147-198 143-195 (411)
125 COG1979 Uncharacterized oxidor 39.3 79 0.0017 31.3 6.1 76 78-164 27-106 (384)
126 cd08196 DHQS-like1 Dehydroquin 37.7 1.9E+02 0.0042 28.4 8.8 77 81-168 20-96 (346)
127 TIGR02478 6PF1K_euk 6-phosphof 36.6 67 0.0015 35.1 5.8 51 147-198 478-531 (745)
128 cd00127 DSPc Dual specificity 35.2 19 0.00041 29.6 1.1 32 17-48 74-106 (139)
129 PRK13805 bifunctional acetalde 35.1 2.3E+02 0.0051 31.4 9.8 76 79-167 479-558 (862)
130 PF00365 PFK: Phosphofructokin 34.9 26 0.00056 33.6 2.1 41 147-194 92-132 (282)
131 PF12219 End_tail_spike: Catal 34.8 20 0.00042 30.8 1.1 13 149-161 86-98 (160)
132 TIGR01752 flav_long flavodoxin 32.5 3.3E+02 0.007 23.5 8.9 25 83-109 2-26 (167)
133 PRK07085 diphosphate--fructose 32.4 69 0.0015 33.8 4.9 50 147-198 164-218 (555)
134 cd00764 Eukaryotic_PFK Phospho 32.2 84 0.0018 34.5 5.6 47 147-193 97-158 (762)
135 TIGR00730 conserved hypothetic 30.8 63 0.0014 28.8 3.7 34 148-187 32-66 (178)
136 PLN03028 pyrophosphate--fructo 30.0 80 0.0017 33.7 4.9 50 147-198 173-227 (610)
137 TIGR02477 PFKA_PPi diphosphate 29.8 71 0.0015 33.6 4.5 46 147-194 161-206 (539)
138 TIGR02478 6PF1K_euk 6-phosphof 28.3 1.2E+02 0.0025 33.4 5.9 47 147-193 94-155 (745)
139 cd01836 FeeA_FeeB_like SGNH_hy 28.0 1.5E+02 0.0033 25.5 5.7 58 151-219 45-102 (191)
140 COG0205 PfkA 6-phosphofructoki 27.1 1.8E+02 0.004 28.8 6.6 40 147-193 94-133 (347)
141 PTZ00287 6-phosphofructokinase 26.6 89 0.0019 36.5 4.8 50 147-198 928-982 (1419)
142 COG1646 Predicted phosphate-bi 26.3 2.9E+02 0.0062 26.0 7.2 43 146-190 40-82 (240)
143 TIGR01754 flav_RNR ribonucleot 25.4 2E+02 0.0043 23.9 5.8 28 81-110 1-28 (140)
144 PRK05948 precorrin-2 methyltra 25.1 3.7E+02 0.0081 24.9 8.0 47 147-198 92-143 (238)
145 PRK06703 flavodoxin; Provision 24.4 4.1E+02 0.0089 22.1 7.6 28 81-110 2-29 (151)
146 COG1691 NCAIR mutase (PurE)-re 24.2 70 0.0015 29.9 2.8 33 148-189 174-206 (254)
147 KOG1719 Dual specificity phosp 24.1 40 0.00086 29.8 1.2 34 15-48 100-134 (183)
148 PTZ00468 phosphofructokinase f 23.9 1.3E+02 0.0029 34.9 5.5 47 147-194 800-850 (1328)
149 TIGR00725 conserved hypothetic 23.6 1.4E+02 0.003 25.9 4.6 53 129-193 18-72 (159)
150 PLN02948 phosphoribosylaminoim 23.1 2.8E+02 0.0061 29.3 7.5 89 80-189 410-499 (577)
151 PRK11104 hemG protoporphyrinog 23.1 1.8E+02 0.0039 25.6 5.2 85 81-187 1-87 (177)
152 PTZ00393 protein tyrosine phos 22.9 38 0.00083 31.8 0.9 30 18-47 164-194 (241)
153 cd00765 Pyrophosphate_PFK Phos 22.8 1.1E+02 0.0025 32.2 4.4 46 147-194 166-211 (550)
154 TIGR03590 PseG pseudaminic aci 22.4 3.1E+02 0.0066 25.8 7.0 29 146-186 240-268 (279)
155 TIGR00725 conserved hypothetic 22.2 1.1E+02 0.0024 26.6 3.6 29 149-185 94-122 (159)
156 cd04502 SGNH_hydrolase_like_7 22.0 1.3E+02 0.0028 25.5 4.0 58 152-219 28-85 (171)
157 PRK11866 2-oxoacid ferredoxin 21.7 77 0.0017 30.4 2.8 24 146-169 75-99 (279)
158 PF03641 Lysine_decarbox: Poss 21.7 97 0.0021 25.9 3.1 35 150-185 57-91 (133)
159 COG0371 GldA Glycerol dehydrog 21.2 4.9E+02 0.011 26.0 8.3 95 81-195 31-125 (360)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-50 Score=405.13 Aligned_cols=294 Identities=35% Similarity=0.549 Sum_probs=226.3
Q ss_pred ccccchhee---hhhhcCCce-eEeeccccccccchhhhhHHhhhHHHhhhcCCCCCCcc------CCCccccCCCCCCC
Q 019227 10 IAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTC------QSDVIVDGNGVQPP 79 (344)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 79 (344)
.+.+.|.|+ -|.+|-... .+||++.+++++.+|.++++.....+ .++.+...... -...+.......++
T Consensus 192 ~~~~~c~~~~~~~h~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (634)
T KOG1169|consen 192 LTGPRCGWCQIRVHDKCKSELSQECDLGELKDHILPPSTLRPARTARV-ASDHSGLPGEKSEEVTDAKKMQQLLVTDPPD 270 (634)
T ss_pred ccccccceeeeeeecchHHHHhhhccChhhhhccCCceeeeccccccc-ccccccccccccccccccccccccccCCCCC
Confidence 345677775 344554433 69999999999999999998766621 00111010000 00111112466778
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeec-ccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVK-PHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~-~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
..|++||+||+||+.+|+.+.++++.+|++.|+|++.... |.. ...+.+. .+..+|+||||||
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~--------gL~l~~~--------~~~~riLVcGGDG 334 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRP--------GLTLFRD--------VPDFRILVCGGDG 334 (634)
T ss_pred CcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCch--------hHHHHHh--------CCcceEEEecCCC
Confidence 8999999999999999999999999999999999998764 432 2233332 2345999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCC
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~ 238 (344)
||+||++++.+....+....||+||+|+||||||||.|+||++||..+.. +.++|+.|..+.+.++|.|+|.+.++.++
T Consensus 335 TvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~ 413 (634)
T KOG1169|consen 335 TVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGE 413 (634)
T ss_pred cchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccc
Confidence 99999999988765566678999999999999999999999999998776 88899999999999999999999877665
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccc
Q 019227 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (344)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~ 318 (344)
.. +|+.++.+. + ......+|+||||||+||+|+++||.+|+++|++|+||++||++|+.||+.
T Consensus 414 ~~--~~~~~~~~~----------~-----~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q 476 (634)
T KOG1169|consen 414 LV--QYSLKPPEK----------G-----DPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQ 476 (634)
T ss_pred cc--cccccCCCc----------C-----CCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecch
Confidence 44 555543311 1 113467999999999999999999999999999999999999999999995
Q ss_pred eeeccccCCCCCCceEEeecC
Q 019227 319 QGWFLTPCISDPNLRLDICEL 339 (344)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (344)
+ ||+++|++..-=-.+.||+
T Consensus 477 ~-~f~~~ck~~~~~i~i~~~~ 496 (634)
T KOG1169|consen 477 E-TFAARCKNLHLHIKIELDG 496 (634)
T ss_pred h-hHHHhhcCCccceEEEEcc
Confidence 5 8999999953333445543
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-46 Score=367.80 Aligned_cols=272 Identities=31% Similarity=0.550 Sum_probs=206.3
Q ss_pred EeeccccccccchhhhhHHhhhHH--Hh-hhcC----------CCCCCccCCCccccCCCCCCCCCcEEEEEcCCCCCCC
Q 019227 29 RIDKEDLRRKLSIPEYLRVAMSNA--IR-RKEG----------EPPADTCQSDVIVDGNGVQPPEAPMVVFINSRSGGRH 95 (344)
Q Consensus 29 ~~~~~~~r~~~~~p~yl~~~~~~~--~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vlvIvNP~SG~g~ 95 (344)
.|.+|.+..+|++|.||+...+-. ++ +|.+ +.+......+.+++...+++.++|++|||||+||+++
T Consensus 301 pCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsSplmkPLLVFVNPKSGGNq 380 (1004)
T KOG0782|consen 301 PCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQ 380 (1004)
T ss_pred cccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCCCCCCceEEEecCCCCCcc
Confidence 699999999999999998764331 11 1111 1111111122344456788899999999999999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCC
Q 019227 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGR 175 (344)
Q Consensus 96 ~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eVln~L~~~~~~~~ 175 (344)
|.+.++.+.++|+++|+||++...|. .+-++-+. ..+.+|++|||||||+|+++.|..+ +.
T Consensus 381 GsK~lq~f~WyLNPRQVFDlsq~GPK--------~aLEmyRK--------V~nLRILaCGGDGTVGWiLStLD~L---~l 441 (1004)
T KOG0782|consen 381 GSKALQTFCWYLNPRQVFDLSQLGPK--------FALEMYRK--------VVNLRILACGGDGTVGWILSTLDNL---NL 441 (1004)
T ss_pred hHHHHHHHHHhcChhhheehhccCcH--------HHHHHHHh--------ccceEEEEecCCCceeehhhhhhhc---CC
Confidence 99999999999999999999876554 34455443 2347999999999999999999876 34
Q ss_pred CCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccCCCCCCCCCcccccc
Q 019227 176 EPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALD 255 (344)
Q Consensus 176 ~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~~p~~~~~~~~~~~~ 255 (344)
.+.+|+||+|+||||||||+|+|+++|...| +.++++.+..|.+..+|.|++.+. |+.... .++ .|
T Consensus 442 ~p~PPvailPLGTGNDLARtlnWGGgytDEP---vSkil~~ve~gtvVqLDRW~lhvE-pNp~~~--------pEe--~d 507 (1004)
T KOG0782|consen 442 PPYPPVAILPLGTGNDLARTLNWGGGYTDEP---VSKILQAVEHGTVVQLDRWRLHVE-PNPSCN--------PEE--ED 507 (1004)
T ss_pred CCCCCeeEeecCCcchHHHhcccCCCcCcch---HHHHHHHHhcCcEEeeeeeeeccc-CCCCCC--------hhh--hc
Confidence 6789999999999999999999999998764 667888899999999999999873 333210 011 12
Q ss_pred ccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccceeeccccCCCCCCceEE
Q 019227 256 QGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRLD 335 (344)
Q Consensus 256 ~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~~~~~~~~~~~~~~~~~ 335 (344)
.|. ...+| -.+|.||||+||||+|+.+||++|+.+|.+||+|++||++|++.++... |--+-+---.--.+
T Consensus 508 dG~--~~~LP------L~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDf-l~rSskDL~khi~v 578 (1004)
T KOG0782|consen 508 DGM--QSALP------LTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDF-LKRSSKDLCKHITV 578 (1004)
T ss_pred ccc--hhccc------hhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHH-HhhhhHHhhhheEE
Confidence 221 11233 3589999999999999999999999999999999999999999999883 33232222233467
Q ss_pred eecCccc
Q 019227 336 ICELGSL 342 (344)
Q Consensus 336 ~~~~~~~ 342 (344)
+|||.-|
T Consensus 579 vCDG~Dl 585 (1004)
T KOG0782|consen 579 VCDGVDL 585 (1004)
T ss_pred EecCccC
Confidence 8998755
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=295.17 Aligned_cols=217 Identities=21% Similarity=0.225 Sum_probs=170.6
Q ss_pred heehhhhcCCce-eEeeccccccccchhhhhHHhh----hHHHhhhcCCCCCCccCCCcccc------CCCCCCCCCcEE
Q 019227 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAM----SNAIRRKEGEPPADTCQSDVIVD------GNGVQPPEAPMV 84 (344)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vl 84 (344)
.++..++.|.+| |||..|..|+..++.+||...- .+...+..++.|+...+|..|.. +......+++++
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~~~~~ 246 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIHKRAW 246 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccCCceE
Confidence 456778889999 9999999999999999998532 22234445555666667777664 455666688999
Q ss_pred EEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHH
Q 019227 85 VFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL 164 (344)
Q Consensus 85 vIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eVl 164 (344)
+|+||+||++++.+.++++++.|.+. +++++ +.|+..++++++++++. .++.+.||++|||||||||+
T Consensus 247 iI~NP~SG~g~~~~~~~~i~~~L~~~--~~~~v-----~~t~~~~~a~~la~~~~-----~~~~d~Viv~GGDGTl~ev~ 314 (547)
T PRK12361 247 LIANPVSGGGKWQEYGEQIQRELKAY--FDLTV-----KLTTPEISAEALAKQAR-----KAGADIVIACGGDGTVTEVA 314 (547)
T ss_pred EEECCCCCCCcHHHHHHHHHHHHhcC--CceEE-----EECCCCccHHHHHHHHH-----hcCCCEEEEECCCcHHHHHH
Confidence 99999999999999999999999863 44433 34566788999988752 24568999999999999999
Q ss_pred HHHhhcccCCCCCCCcEEEeecCCccchhhhh-CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccCCC
Q 019227 165 GSVGELNKQGREPVPPVAIIPLGTGNDLSRSF-GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (344)
Q Consensus 165 n~L~~~~~~~~~~~~plgIIP~GTgNDfArsL-g~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~~p 243 (344)
|+|.+ .++||||||+||||||||+| |++..+ .++.++++ .|.+|+.+++|++++
T Consensus 315 ~~l~~-------~~~~lgiiP~GTgNdfAr~L~gi~~~~-~~~~~a~~----~i~~g~~~~iD~g~v------------- 369 (547)
T PRK12361 315 SELVN-------TDITLGIIPLGTANALSHALFGLGSKL-IPVEQACD----NIIQGHTQRIDTARC------------- 369 (547)
T ss_pred HHHhc-------CCCCEEEecCCchhHHHHHhcCCCCCC-ccHHHHHH----HHHhCCCeEEEEEEE-------------
Confidence 99975 46899999999999999999 886421 24555544 467899999999874
Q ss_pred CCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhc
Q 019227 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRN 296 (344)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~ 296 (344)
++++|+|++|+||||+|++..++.++
T Consensus 370 ---------------------------n~~~fln~agiG~da~v~~~~~~~~k 395 (547)
T PRK12361 370 ---------------------------NDRLMLLLVGIGFEQKMIESADRERK 395 (547)
T ss_pred ---------------------------cCeEEEEEEeechhHHHHHhccHHHH
Confidence 24699999999999999998887653
No 4
>PRK00861 putative lipid kinase; Reviewed
Probab=99.97 E-value=3.5e-30 Score=246.68 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++++|+||.||++++.+.+++++..|.+. +++.. +.|+..+|+.++++++. ..+.+.||++|||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~--~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE--MDLDI-----YLTTPEIGADQLAQEAI-----ERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc--CceEE-----EEccCCCCHHHHHHHHH-----hcCCCEEEEECChHH
Confidence 5689999999999998888889998888763 33332 34667789999998752 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~ 239 (344)
+|||+|+|.. .++|||+||+||||||||+||++ .++.++++ .+.+|+.+++|++++.
T Consensus 70 l~evv~~l~~-------~~~~lgviP~GTgNdfAr~lgi~----~~~~~a~~----~i~~g~~~~iDlg~vn-------- 126 (300)
T PRK00861 70 LSAVAGALIG-------TDIPLGIIPRGTANAFAAALGIP----DTIEEACR----TILQGKTRRVDVAYCN-------- 126 (300)
T ss_pred HHHHHHHHhc-------CCCcEEEEcCCchhHHHHHcCCC----CCHHHHHH----HHHcCCcEEeeEEEEC--------
Confidence 9999999975 46899999999999999999994 46666554 4678999999998741
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccce
Q 019227 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (344)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~ 319 (344)
+++|+|.+|+||||+|++..++..++ + .+++.|...++++
T Consensus 127 --------------------------------~~~fin~a~~G~~a~v~~~~~~~~k~-------~-~G~~aY~~~~l~~ 166 (300)
T PRK00861 127 --------------------------------GQPMILLAGIGFEAETVEEADREAKN-------R-FGILAYILSGLQQ 166 (300)
T ss_pred --------------------------------CEEEEEEEeccHHHHHHHHhhHHHHh-------c-ccHHHHHHHHHHH
Confidence 36899999999999999988764422 1 2456666655555
Q ss_pred e
Q 019227 320 G 320 (344)
Q Consensus 320 ~ 320 (344)
+
T Consensus 167 l 167 (300)
T PRK00861 167 L 167 (300)
T ss_pred h
Confidence 3
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.97 E-value=8.2e-30 Score=244.76 Aligned_cols=173 Identities=23% Similarity=0.235 Sum_probs=134.0
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++++|+||.||++++.+.++++.+.|.+.. +++.. +.|+..+|+.++++++. ..+.|.||++||||
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g-~~~~~-----~~t~~~~~~~~~a~~~~-----~~~~d~vvv~GGDG 75 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRG-VDVVE-----IVGTDAHDARHLVAAAL-----AKGTDALVVVGGDG 75 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcC-CeEEE-----EEeCCHHHHHHHHHHHH-----hcCCCEEEEECCch
Confidence 468999999999999998889999888887643 45443 34566789999998652 24568999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCC
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~ 238 (344)
|||+|+|+|.. .++|||+||+||+|||||+||++. .++.+++ +.+.+|+++++|++++... +
T Consensus 76 Ti~evv~~l~~-------~~~~lgiiP~GT~NdfAr~lg~~~---~~~~~a~----~~i~~g~~~~iDlg~v~~~--~-- 137 (306)
T PRK11914 76 VISNALQVLAG-------TDIPLGIIPAGTGNDHAREFGIPT---GDPEAAA----DVIVDGWTETVDLGRIQDD--D-- 137 (306)
T ss_pred HHHHHhHHhcc-------CCCcEEEEeCCCcchhHHHcCCCC---CCHHHHH----HHHHcCCceEEEEEEEecC--C--
Confidence 99999999974 468999999999999999999853 1455544 4577899999999987420 0
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccc
Q 019227 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (344)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~ 318 (344)
...++|+|++|+||||.|+...++.|. + ..++.|...+++
T Consensus 138 -------------------------------~~~~~f~n~~~~G~~a~v~~~~~~~k~--------~-~G~~aY~~~~l~ 177 (306)
T PRK11914 138 -------------------------------GIVKWFGTVAATGFDSLVTDRANRMRW--------P-HGRMRYNLAMLA 177 (306)
T ss_pred -------------------------------CCcEEEEEEEeeehHHHHHHHHHhccc--------c-CCchhhHHHHHH
Confidence 013699999999999999988876542 1 256677666666
Q ss_pred ee
Q 019227 319 QG 320 (344)
Q Consensus 319 ~~ 320 (344)
++
T Consensus 178 ~l 179 (306)
T PRK11914 178 EL 179 (306)
T ss_pred HH
Confidence 54
No 6
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=243.57 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=134.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++.+|+||.||++++.+.++++++.|..+. +++.. ..|+..+|+.++++++. ..++|.||++|||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g-~~~~~-----~~t~~~g~a~~~a~~a~-----~~~~D~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAG-HELSV-----RVTEEAGDAIEIAREAA-----VEGYDTVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcC-CeEEE-----EEeecCccHHHHHHHHH-----hcCCCEEEEecCcch
Confidence 68899999999999999999999999998754 45543 33445589999999864 347899999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~ 239 (344)
||||+|+|.+.+ .+||||||+||+|||||+|||+. + .+..+++.+.+|+++++|++++
T Consensus 71 v~evingl~~~~------~~~LgilP~GT~NdfAr~Lgip~----~---~~~~Al~~i~~g~~~~vDlg~~--------- 128 (301)
T COG1597 71 VNEVANGLAGTD------DPPLGILPGGTANDFARALGIPL----D---DIEAALELIKSGETRKVDLGQV--------- 128 (301)
T ss_pred HHHHHHHHhcCC------CCceEEecCCchHHHHHHcCCCc----h---hHHHHHHHHHcCCeEEEeehhc---------
Confidence 999999999742 22399999999999999999954 2 2444566688899999999842
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccc-eEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccc
Q 019227 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (344)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~ 318 (344)
+.+ ||+|.+|+||+|++++..+..|++ ..+++.|...++.
T Consensus 129 -------------------------------~~~~~fin~a~~G~~a~~~~~~~~~~k~--------~~g~~~y~~~~~~ 169 (301)
T COG1597 129 -------------------------------NGRRYFINNAGIGFDAEVVAAVEEERKK--------GFGRLAYALAGLA 169 (301)
T ss_pred -------------------------------CCcceEEEEeecchhHHHHHhhcHHHHh--------ccchHHHHHHHHH
Confidence 123 999999999999999999988864 1255566665555
Q ss_pred ee
Q 019227 319 QG 320 (344)
Q Consensus 319 ~~ 320 (344)
.+
T Consensus 170 ~l 171 (301)
T COG1597 170 VL 171 (301)
T ss_pred hc
Confidence 44
No 7
>PRK13055 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.8e-29 Score=245.50 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=122.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
+++++||+||.||++++.+.+.+++.+|.+.+ +++.+. ..+...+|++++++++. ..+.+.||++|||||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g-~~~~i~----~t~~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAG-YETSAF----QTTPEPNSAKNEAKRAA-----EAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcC-CeEEEE----EeecCCccHHHHHHHHh-----hcCCCEEEEECCCCH
Confidence 47899999999999998889999999998754 343321 11234578888887652 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCC-cHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCC
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~-~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~ 238 (344)
||||+|+|... ...+||||||+||||||||+||++ . ++.++++ .+..|+++++|++++.
T Consensus 72 l~evvngl~~~-----~~~~~LgiiP~GTgNdfAr~Lgi~----~~~~~~a~~----~l~~g~~~~vD~g~v~------- 131 (334)
T PRK13055 72 INEVVNGIAPL-----EKRPKMAIIPAGTTNDYARALKIP----RDNPVEAAK----VILKNQTIKMDIGRAN------- 131 (334)
T ss_pred HHHHHHHHhhc-----CCCCcEEEECCCchhHHHHHcCCC----CcCHHHHHH----HHHcCCcEEeeEEEEC-------
Confidence 99999999853 246899999999999999999984 4 5666554 4677999999999752
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhh
Q 019227 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLR 295 (344)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R 295 (344)
+++||+|.+|+||||.|++..+...
T Consensus 132 --------------------------------~~~~F~n~ag~G~da~v~~~~~~~~ 156 (334)
T PRK13055 132 --------------------------------EDKYFINIAAGGSLTELTYSVPSQL 156 (334)
T ss_pred --------------------------------CCcEEEEEehhccchHHHHhcCHHH
Confidence 1469999999999999998876543
No 8
>PRK13059 putative lipid kinase; Reviewed
Probab=99.96 E-value=2.1e-29 Score=241.09 Aligned_cols=168 Identities=21% Similarity=0.176 Sum_probs=125.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++++|+||.||++++.+.++++++.|.+.+ +++....+ ...++. +.++++. ....+.||++|||||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g-~~~~~~~~-----~~~~~~-~~~~~~~-----~~~~d~vi~~GGDGT 68 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKG-YLVVPYRI-----SLEYDL-KNAFKDI-----DESYKYILIAGGDGT 68 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCC-cEEEEEEc-----cCcchH-HHHHHHh-----hcCCCEEEEECCccH
Confidence 46899999999999988888889988887653 45443222 112222 3333321 235689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~ 239 (344)
||||+|+|+.. ..++||||||+||||||||+||+ |.++.++++. |..|+.+++|++++.
T Consensus 69 v~evv~gl~~~-----~~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~~~----i~~g~~~~vDlg~v~-------- 127 (295)
T PRK13059 69 VDNVVNAMKKL-----NIDLPIGILPVGTANDFAKFLGM----PTDIGEACEQ----ILKSKPKKVDLGKIN-------- 127 (295)
T ss_pred HHHHHHHHHhc-----CCCCcEEEECCCCHhHHHHHhCC----CCCHHHHHHH----HHhCCcEEeeEEEEC--------
Confidence 99999999853 24689999999999999999998 4567666554 667999999999752
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccce
Q 019227 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (344)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~ 319 (344)
++||+|++|+||||+|++..+...+ +..+++.|...++++
T Consensus 128 --------------------------------~~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~~~~ 167 (295)
T PRK13059 128 --------------------------------DKYFINVASTGLFTDVSQKTDVNLK--------NTIGKLAYYLKGLEE 167 (295)
T ss_pred --------------------------------CEEEEEEEeeeechhhhhhccHHHh--------hCcchHHHHHHHHHH
Confidence 3699999999999999998864322 223667777666665
Q ss_pred e
Q 019227 320 G 320 (344)
Q Consensus 320 ~ 320 (344)
+
T Consensus 168 l 168 (295)
T PRK13059 168 L 168 (295)
T ss_pred H
Confidence 4
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=99.96 E-value=4e-29 Score=239.97 Aligned_cols=150 Identities=23% Similarity=0.245 Sum_probs=121.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++++|+||+||++++.+.+.++...|.+.+ +++.. ..|++.+|++++++++. .+..+.||++|||||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~-~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDGT 69 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAG-YETSA-----HATTGPGDATLAAERAV-----ERKFDLVIAAGGDGT 69 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcC-CEEEE-----EEecCCCCHHHHHHHHH-----hcCCCEEEEEcCCCH
Confidence 46899999999999887778888888887654 34432 34667789999998642 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~ 239 (344)
||+|+|+|+.. ...+||||||.||||||||+||++ .++.++++ .+..|..+++|++++.
T Consensus 70 l~~vv~gl~~~-----~~~~~lgiiP~GT~NdfAr~lgi~----~~~~~a~~----~i~~g~~~~vDlg~vn-------- 128 (304)
T PRK13337 70 LNEVVNGIAEK-----ENRPKLGIIPVGTTNDFARALHVP----RDIEKAAD----VIIEGHTVPVDIGKAN-------- 128 (304)
T ss_pred HHHHHHHHhhC-----CCCCcEEEECCcCHhHHHHHcCCC----CCHHHHHH----HHHcCCeEEEEEEEEC--------
Confidence 99999999863 246899999999999999999984 46666554 4678999999998742
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhh
Q 019227 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHH 293 (344)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~ 293 (344)
+++|+|.+|+||||.|++..+.
T Consensus 129 --------------------------------~~~fln~~g~G~~a~v~~~~~~ 150 (304)
T PRK13337 129 --------------------------------NRYFINIAGGGRLTELTYEVPS 150 (304)
T ss_pred --------------------------------CEEEEeeehhhHHHHHHHhcCH
Confidence 4699999999999999987764
No 10
>PRK13057 putative lipid kinase; Reviewed
Probab=99.96 E-value=5.8e-29 Score=236.91 Aligned_cols=160 Identities=22% Similarity=0.273 Sum_probs=125.7
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 019227 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (344)
Q Consensus 84 lvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eV 163 (344)
++|+||.||+++ +.+++++..|.+.+ +++.. ..|+..+++++++++. ..+.+.||++|||||||||
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g-~~~~~-----~~t~~~~~a~~~~~~~------~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAG-LELVE-----PPAEDPDDLSEVIEAY------ADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcC-CeEEE-----EecCCHHHHHHHHHHH------HcCCCEEEEECchHHHHHH
Confidence 479999999876 46788888887654 44433 3456778899988753 2457899999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccCCC
Q 019227 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (344)
Q Consensus 164 ln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~~p 243 (344)
+|+|.. .++|||+||+||||||||+||++ .++.+++ +.|..++.+++|++++.
T Consensus 67 ~~~l~~-------~~~~lgiiP~GT~Ndfar~Lg~~----~~~~~a~----~~i~~~~~~~vD~g~~~------------ 119 (287)
T PRK13057 67 APALVE-------TGLPLGILPLGTANDLARTLGIP----LDLEAAA----RVIATGQVRRIDLGWVN------------ 119 (287)
T ss_pred HHHHhc-------CCCcEEEECCCCccHHHHHcCCC----CCHHHHH----HHHHcCCeEEeeEEEEC------------
Confidence 999975 46899999999999999999994 4565554 44778999999999752
Q ss_pred CCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeeccccee
Q 019227 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 320 (344)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~~ 320 (344)
++||+|++|+||||.|++.++..++ +..+++.|...+++.+
T Consensus 120 ----------------------------~~~f~n~~g~G~da~v~~~~~~~~k--------~~~G~~aY~~~~~~~l 160 (287)
T PRK13057 120 ----------------------------GHYFFNVASLGLSAELARRLTKELK--------RRWGTLGYAIAALRVL 160 (287)
T ss_pred ----------------------------CEEEEEEEecCccHHHHHHhhHHhh--------ccCChhHHHHHHHHHH
Confidence 3699999999999999998876442 2236777777766664
No 11
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.96 E-value=8.4e-29 Score=251.18 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=132.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHH-HHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 019227 78 PPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (344)
Q Consensus 78 ~~~~~vlvIvNP~SG~g~~~~~~~-~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GG 156 (344)
.++++++||+||.||++++.+++. .++++|...+ +++.+ ..|++.+||++++++++ ..++|.||++||
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g-i~~~v-----~~T~~~ghA~~la~~~~-----~~~~D~VV~vGG 177 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD-IQLTI-----QETKYQLHAKEVVRTMD-----LSKYDGIVCVSG 177 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC-CeEEE-----EeccCccHHHHHHHHhh-----hcCCCEEEEEcC
Confidence 567899999999999999888764 6888997654 34433 45778899999998753 356799999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhh----CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEE
Q 019227 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF----GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (344)
Q Consensus 157 DGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsL----g~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v 232 (344)
|||||||+|+|...+++....++||||||+||||||||+| |+ |.++.+|+. .|..|+.+++|++.+.-
T Consensus 178 DGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gi----p~~~~~A~~----~I~~g~~~~vDlg~v~~ 249 (481)
T PLN02958 178 DGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGE----PCSATNAVL----AIIRGHKCSLDVATILQ 249 (481)
T ss_pred CCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCC----CcCHHHHHH----HHHcCCceEEeEEEEEc
Confidence 9999999999986533222457999999999999999999 76 556666554 46789999999998641
Q ss_pred ecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceee
Q 019227 233 QMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIY 312 (344)
Q Consensus 233 ~~~~g~~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y 312 (344)
++ ...+|+|.+|+||||+|....++.| +.+++.|
T Consensus 250 -----------------------------~~-------~~~f~vn~~g~GfdAdV~~~se~kr----------~lG~lrY 283 (481)
T PLN02958 250 -----------------------------GE-------TKFFSVLMLAWGLVADIDIESEKYR----------WMGSARL 283 (481)
T ss_pred -----------------------------CC-------ceEEEEEeeeeehhhhhhccccccc----------ccchHHH
Confidence 00 0123479999999999976544333 2355555
Q ss_pred eecccce
Q 019227 313 SGYSCTQ 319 (344)
Q Consensus 313 ~~~~~~~ 319 (344)
..++++.
T Consensus 284 ~~~~l~~ 290 (481)
T PLN02958 284 DFYGLQR 290 (481)
T ss_pred HHHHHHH
Confidence 5555544
No 12
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.96 E-value=1.7e-28 Score=234.41 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 019227 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (344)
Q Consensus 82 ~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~ 161 (344)
++++|+||+||.. +.+.++.+.|.+.+ ++++. +.|+..+|++++++++. ..+.+.||++|||||||
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDEG-IQLHV-----RVTWEKGDAQRYVAEAL-----ALGVSTVIAGGGDGTLR 66 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHCC-CeEEE-----EEecCCCCHHHHHHHHH-----HcCCCEEEEEcCChHHH
Confidence 4789999998743 34556666776543 44433 34667789999998753 24568999999999999
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccC
Q 019227 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVD 241 (344)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~ 241 (344)
||+|+|.... ....+|||+||+||||||||+||++ .++.++++ .+..|+++++|++++.
T Consensus 67 ev~ngl~~~~---~~~~~~lgiiP~GTgNdfAr~l~ip----~~~~~a~~----~i~~g~~~~iDlg~v~---------- 125 (293)
T TIGR03702 67 EVATALAQIR---DDAAPALGLLPLGTANDFATAAGIP----LEPAKALK----LALNGAAQPIDLARVN---------- 125 (293)
T ss_pred HHHHHHHhhC---CCCCCcEEEEcCCchhHHHHhcCCC----CCHHHHHH----HHHhCCceeeeEEEEC----------
Confidence 9999998532 1235799999999999999999994 46666544 4667999999998742
Q ss_pred CCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeeccccee
Q 019227 242 PPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 320 (344)
Q Consensus 242 ~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~~ 320 (344)
+ .+||+|.+|+||||+|++..++..+ +..+++.|...+++.+
T Consensus 126 --------------------~---------~~~f~n~~~~G~da~v~~~~~~~~k--------~~~G~~aY~~~~l~~l 167 (293)
T TIGR03702 126 --------------------G---------KHYFLNMATGGFGTRVTTETSEKLK--------KALGGAAYLITGLTRF 167 (293)
T ss_pred --------------------C---------ccEEEEEeecccchHhhhhhhHHHH--------hccchHHHHHHHHHHH
Confidence 0 2589999999999999999876432 2236777777766664
No 13
>PRK13054 lipid kinase; Reviewed
Probab=99.95 E-value=6.6e-28 Score=231.12 Aligned_cols=168 Identities=21% Similarity=0.250 Sum_probs=125.1
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++++|+||++++ .+.+.++...|.+.+ +++.+ ..|+..+|+.++++++. ..+.+.||++||||
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELREAVGLLREEG-HTLHV-----RVTWEKGDAARYVEEAL-----ALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccc---hHHHHHHHHHHHHcC-CEEEE-----EEecCCCcHHHHHHHHH-----HcCCCEEEEECCcc
Confidence 478999999999863 345666666676543 34432 34667789999988752 24578999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCC
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~ 238 (344)
|||||+|+|.... ...++|||+||+||||||||+||++ .++.++++ .|.+|+.++||++++.
T Consensus 68 Tl~evv~~l~~~~---~~~~~~lgiiP~GTgNdfar~lgi~----~~~~~a~~----~i~~g~~~~iDlg~v~------- 129 (300)
T PRK13054 68 TINEVATALAQLE---GDARPALGILPLGTANDFATAAGIP----LEPDKALK----LAIEGRAQPIDLARVN------- 129 (300)
T ss_pred HHHHHHHHHHhhc---cCCCCcEEEEeCCcHhHHHHhcCCC----CCHHHHHH----HHHhCCceEEEEEEEc-------
Confidence 9999999998631 1246899999999999999999984 46666554 4677999999999752
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccc-eEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeeccc
Q 019227 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 317 (344)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~ 317 (344)
++ ||+|.+|+||||+|++..++..+ +..+++.|...++
T Consensus 130 ---------------------------------~~~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~~Y~~~~l 168 (300)
T PRK13054 130 ---------------------------------DRTYFINMATGGFGTRVTTETPEKLK--------AALGGVAYLIHGL 168 (300)
T ss_pred ---------------------------------CceEEEEEeecchhHHHHHhhHHHHH--------hccchHHHHHHHH
Confidence 24 99999999999999988865332 1235666665555
Q ss_pred ce
Q 019227 318 TQ 319 (344)
Q Consensus 318 ~~ 319 (344)
++
T Consensus 169 ~~ 170 (300)
T PRK13054 169 MR 170 (300)
T ss_pred HH
Confidence 54
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.94 E-value=7.3e-27 Score=222.67 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=124.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++++|+||.||++++.+.++++.+.|.+.+. ++.. +.|+..+++.+++++.. ..+.+.||++|||||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~-~~~~-----~~t~~~~~~~~~~~~~~-----~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGM-EIHV-----RVTWEKGDAARYVEEAR-----KFGVDTVIAGGGDGT 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCC-EEEE-----EEecCcccHHHHHHHHH-----hcCCCEEEEECCCCh
Confidence 478999999999998888889999998876543 3322 23444556666655321 235689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~ 239 (344)
+++|+|+|... ...+|||+||+||+||||++||++ .++.+++ +.+.+++.+++|++++.
T Consensus 70 l~~v~~~l~~~-----~~~~~lgiiP~Gt~N~~a~~l~i~----~~~~~~~----~~l~~~~~~~~Dlg~v~-------- 128 (293)
T TIGR00147 70 INEVVNALIQL-----DDIPALGILPLGTANDFARSLGIP----EDLDKAA----KLVIAGDARAIDMGQVN-------- 128 (293)
T ss_pred HHHHHHHHhcC-----CCCCcEEEEcCcCHHHHHHHcCCC----CCHHHHH----HHHHcCCceEEEEEEEC--------
Confidence 99999999753 234799999999999999999984 4566554 44678999999998742
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccce-EEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccc
Q 019227 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (344)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~ 318 (344)
+++ |+|++|+||||++++.++...+ +..+++.|...+++
T Consensus 129 --------------------------------~~~~fln~~g~G~~a~v~~~~~~~~k--------~~~g~~~Y~~~~l~ 168 (293)
T TIGR00147 129 --------------------------------KQYCFINMAGGGFGTEITTETPEKLK--------AALGSLSYILSGLM 168 (293)
T ss_pred --------------------------------CeEEEEEEEeechhhHhHhhCCHHHH--------hccchHHHHHHHHH
Confidence 368 9999999999999988754322 11255566555554
Q ss_pred e
Q 019227 319 Q 319 (344)
Q Consensus 319 ~ 319 (344)
.
T Consensus 169 ~ 169 (293)
T TIGR00147 169 R 169 (293)
T ss_pred H
Confidence 4
No 15
>PLN02204 diacylglycerol kinase
Probab=99.93 E-value=6.7e-26 Score=231.27 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=134.3
Q ss_pred CCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEE
Q 019227 75 GVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (344)
Q Consensus 75 ~~~~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~ 154 (344)
....++++++|||||.||++++.+.|+++.++|....+ ++.+ ..|++.+||.++++++.+ .....+|.||++
T Consensus 154 ~~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i-~~~v-----~~T~~aghA~d~~~~~~~--~~l~~~D~VVaV 225 (601)
T PLN02204 154 KEVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKV-KTKV-----IVTERAGHAFDVMASISN--KELKSYDGVIAV 225 (601)
T ss_pred hccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCC-eEEE-----EEecCcchHHHHHHHHhh--hhccCCCEEEEE
Confidence 34567889999999999999999999999999987543 3322 457788999999876421 113568999999
Q ss_pred cCchHHHHHHHHHhhccc-------------------------------------C------------------------
Q 019227 155 GGDGTVGWVLGSVGELNK-------------------------------------Q------------------------ 173 (344)
Q Consensus 155 GGDGTv~eVln~L~~~~~-------------------------------------~------------------------ 173 (344)
|||||+|||+|+|+..+. +
T Consensus 226 GGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (601)
T PLN02204 226 GGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGD 305 (601)
T ss_pred cCccHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999974210 0
Q ss_pred ------CCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccCCCCCCC
Q 019227 174 ------GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLK 247 (344)
Q Consensus 174 ------~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~~p~~~~ 247 (344)
.....++|||||+|||||||+++.. +.|+..++.. |+.|+.+++|+++|.-.. .
T Consensus 306 ~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g----~~dp~taa~~----Ii~G~~~~lDig~V~~~~-~----------- 365 (601)
T PLN02204 306 QDSDFPFPNERFRFGIIPAGSTDAIVMCTTG----ERDPVTSALH----IILGRRVCLDIAQVVRWK-T----------- 365 (601)
T ss_pred ccccccccCCCceEEEECCccHHHHHHHccC----CCCHHHHHHH----HHhCCCeEeeEEEEeccc-c-----------
Confidence 0024689999999999999999875 4567666544 677999999999875210 0
Q ss_pred CCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCC
Q 019227 248 PTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKP 299 (344)
Q Consensus 248 ~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p 299 (344)
... .+...+.+||+|.+|+||+|.|+...++.|...|
T Consensus 366 --------------~~~-~~~~~~~ryf~s~ag~Gf~gdVi~esek~R~mG~ 402 (601)
T PLN02204 366 --------------TST-SEIEPYVRYAASFAGYGFYGDVISESEKYRWMGP 402 (601)
T ss_pred --------------ccc-ccccccceEEEEEeecchHHHHHHHhhhhcccch
Confidence 000 0001235799999999999999999777775444
No 16
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.92 E-value=5.3e-25 Score=221.18 Aligned_cols=245 Identities=18% Similarity=0.172 Sum_probs=172.3
Q ss_pred hhcCCce--eEeeccccccccchhhh-hHHhhhHHHhhhc-CCCCCC-ccCCCccccCCCCCCCCCcEEEEEcCCCCCCC
Q 019227 21 RGCGLSG--MRIDKEDLRRKLSIPEY-LRVAMSNAIRRKE-GEPPAD-TCQSDVIVDGNGVQPPEAPMVVFINSRSGGRH 95 (344)
Q Consensus 21 ~~~~~~~--~~~~~~~~r~~~~~p~y-l~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~vlvIvNP~SG~g~ 95 (344)
.+|+..- ++....+.+++.+.|.+ ....+.. +..+. ...... --...............++++||+||++|+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~lLV~iNP~gGkGk 194 (579)
T KOG1116|consen 116 YKLGPKRKLLRVRSTRPFRVDCTPVEPFTLKVAS-FCRKQAAETSDRSFTFEGLGDKSVDSLKRPRRLLVFINPFGGKGK 194 (579)
T ss_pred hhccccccceeeeecccccceeeeeehhhcccce-eehhhhhccccccceecccccccccccCCCccEEEEECCCCCCcc
Confidence 3355554 67777788888888766 2222211 11111 111100 00000000134566788999999999999999
Q ss_pred hhhHHH-HHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccC
Q 019227 96 GPELKE-RLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQ 173 (344)
Q Consensus 96 ~~~~~~-~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eVln~L~~~~~~ 173 (344)
+.++|. +++++|.+..+ |++ .+|++++||+++++..+ ..++|.||++||||++|||+|||+.+.+.
T Consensus 195 a~~~F~~~v~Pll~~A~i~~ev-------v~T~~~~HArei~rt~d-----l~kyDgIv~vsGDGl~hEVlNGLl~R~D~ 262 (579)
T KOG1116|consen 195 AKKLFKNHVEPLLSEAGISFEV-------VLTTRPNHAREIVRTLD-----LGKYDGIVCVSGDGLLHEVLNGLLERPDW 262 (579)
T ss_pred HHHHHHhhhhhhhhhcCceEEE-------EEecCccHHHHHHHhhh-----ccccceEEEecCCcCHHHhhhccccccch
Confidence 999875 57888887664 554 45889999999999874 67899999999999999999999998876
Q ss_pred CCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEecCCCCccCCCCCCCCCcccc
Q 019227 174 GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCA 253 (344)
Q Consensus 174 ~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~~~~g~~~~~p~~~~~~~~~~ 253 (344)
.....+|||+||+||||+||.+++|..++ + -++...+ .++.|....+|+..+....
T Consensus 263 ~~~~klPigiiP~GSGNala~Sv~~~~~~--~--~~~~a~l-~iirg~~t~~dv~~v~~~~------------------- 318 (579)
T KOG1116|consen 263 EAAVKLPIGIIPCGSGNALAKSVLWTNGP--D--LPLLATL-LIIRGRLTPMDVSVVEYAG------------------- 318 (579)
T ss_pred hhHhcCceeEeecCCccHHHHHhhcccCc--c--cchHHHH-HHHccCCCchheeehhhcc-------------------
Confidence 66788999999999999999999998763 2 1222233 3778999999998765310
Q ss_pred ccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCCcccc----------cccCcceeeeecccc
Q 019227 254 LDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQ----------GPISNKLIYSGYSCT 318 (344)
Q Consensus 254 ~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p~~~~----------~~~~NK~~Y~~~~~~ 318 (344)
....++++..+.||-|+|-..-++.|+..|..|. ..++....|..+.-+
T Consensus 319 ----------------~~~~fSfLs~~wGlIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k 377 (579)
T KOG1116|consen 319 ----------------KDRHFSFLSAAWGLIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGK 377 (579)
T ss_pred ----------------CcceEEEEeeeeeeEEecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEeccccc
Confidence 0125888999999999999999999988774432 134456666665443
No 17
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.90 E-value=2.3e-23 Score=176.03 Aligned_cols=125 Identities=30% Similarity=0.424 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHH
Q 019227 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTV 160 (344)
Q Consensus 82 ~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~-~~IVv~GGDGTv 160 (344)
+++||+||+||++++. ++++++.|.... .++.. +.++..++++.+++.. ..... +.||++|||||+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~-~~~~~-----~~t~~~~~~~~~~~~~-----~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG-IDYEV-----IETESAGHAEALARIL-----ALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT-CEEEE-----EEESSTTHHHHHHHHH-----HHTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC-CceEE-----EEEeccchHHHHHHHH-----hhccCccEEEEEcCccHH
Confidence 5899999999999887 588888887654 23322 2344567777777521 13444 899999999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHH-HHHHHHHHHHcCCeeEeeeEEE
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKS-AVKRTLQRASAGPICRLDSWHA 230 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~-al~~~l~~i~~g~~~~iD~~~v 230 (344)
|+++|+|+.... ...+|||+||+||+|||||+||++. ++.. ++ + .+..+..+++|++++
T Consensus 68 ~~vv~~l~~~~~---~~~~~l~iiP~GT~N~~ar~lg~~~----~~~~~a~---~-~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 68 NEVVNGLMGSDR---EDKPPLGIIPAGTGNDFARSLGIPS----DPEANAA---L-LIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHCTSTS---SS--EEEEEE-SSS-HHHHHTT--S----SHHH-HH---H-HHHHSEEEEEEEEEE
T ss_pred HHHHHHHhhcCC---CccceEEEecCCChhHHHHHcCCCC----CcHHHHH---H-HHHhCCCcEeEEEEe
Confidence 999999987532 2267999999999999999999965 4444 22 2 244577779999875
No 18
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.89 E-value=2.7e-25 Score=226.85 Aligned_cols=184 Identities=27% Similarity=0.418 Sum_probs=136.5
Q ss_pred ccchhee---hhhhcCCce-eEeeccccccccchhhhhHHhhhHHHhhhcCCCCCCccCCCccccCCCCCCCCCcEEEEE
Q 019227 12 ARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQSDVIVDGNGVQPPEAPMVVFI 87 (344)
Q Consensus 12 ~~~~~~~---~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIv 87 (344)
---|+|+ .|-.|-.+. -+|.++.-+.-...|..|-....+. ++ -.++. ..+.+-..|++||+
T Consensus 136 d~rclwc~~~vh~~c~~~~~~~cs~~~~~~svi~ptal~~~~~dg----------~~--v~~~~--a~~~~~~spllv~i 201 (1099)
T KOG1170|consen 136 DYRCLWCGCCVHDTCIGNLARACSLGHSALSVIPPTALKEVTPDG----------TA--VFWEE--AYGGPCGSPLLVFI 201 (1099)
T ss_pred CcceEeeccEeehhhhhhHHhhcccccccccccChhhhcccCCCc----------ce--eehhh--hcCCCCCCceeEee
Confidence 3345664 455665555 5888888888777776554433331 11 12322 23336778999999
Q ss_pred cCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHH
Q 019227 88 NSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSV 167 (344)
Q Consensus 88 NP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eVln~L 167 (344)
|.+||..+|.++.+++..+|+..|+|++....|+..++ .+ . .-...+|+||||||+|.||+..+
T Consensus 202 nsksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~-------~f-~--------~~d~friLvcggdGsv~wvls~~ 265 (1099)
T KOG1170|consen 202 NSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLT-------FF-S--------HFESFRILVCGGDGSVGWVLSAI 265 (1099)
T ss_pred cccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhh-------hh-h--------cccceEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999987766643221 11 1 12456999999999999999998
Q ss_pred hhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEE
Q 019227 168 GELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (344)
Q Consensus 168 ~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v 230 (344)
... +.-.++.++++|+|||||+||.|||+..|+.+. .+.++++.+....++.+|.|.+
T Consensus 266 ds~---~lh~kcql~vlplgtgndlarvlgwg~a~~ddt--~~p~il~~~eRastkmldrwsv 323 (1099)
T KOG1170|consen 266 DRL---NLHSKCQLAVLPLGTGNDLARVLGWGHAFYDDT--LLPQILRTMERASTKMLDRWSV 323 (1099)
T ss_pred Hhc---cchhhcccccccCCChHHHHHHhcccccCchhh--ccHHHHHHHHhhhhhhhhcchh
Confidence 765 335788999999999999999999998777653 3457888888899999999985
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.87 E-value=1.1e-21 Score=164.88 Aligned_cols=101 Identities=47% Similarity=0.845 Sum_probs=75.2
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 019227 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (344)
Q Consensus 84 lvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eV 163 (344)
+||+||+||++++.+++.+++..+...+++... +....++.+++++ ...++.||++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~--------~~~~~~~~~~~~~-------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLT--------KKGPAAALVIFRD-------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEe--------cCChHHHHHHHhh-------cCcCCEEEEEccccHHHHH
Confidence 589999999999988888888888754332221 1223344444443 2356799999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCC
Q 019227 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGS 201 (344)
Q Consensus 164 ln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~ 201 (344)
+|+|.+... ....+|||+||+||+|||||+|||+.+
T Consensus 66 vn~l~~~~~--~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKREL--PLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhccc--ccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 999986421 112289999999999999999999764
No 20
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-16 Score=153.20 Aligned_cols=175 Identities=17% Similarity=0.112 Sum_probs=132.8
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEE
Q 019227 74 NGVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (344)
Q Consensus 74 ~~~~~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv 153 (344)
+....+.+.++|||||.+|+|+|.++|+.+.+++ -+..+.+....|+.++||.+..-++.. ++...+|.||+
T Consensus 152 ~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F------~la~v~tkvivTErAnhA~d~~~ei~~--~~~~~yDGiv~ 223 (516)
T KOG1115|consen 152 IKEVERPKNLLVFINPFGGKGNGSKIWETVSKIF------ILAKVNTKVIVTERANHAFDVMAEIQN--KELHTYDGIVA 223 (516)
T ss_pred HHHhcCCccEEEEEcCCCCCCcccchhhhhhhhE------EeeecceeEEEEccccchhhhhhhCCH--hhhhhcccEEE
Confidence 4555678899999999999999999999976653 333344555779999999987766542 34567899999
Q ss_pred EcCchHHHHHHHHHhhcccC-------C-----CCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCC
Q 019227 154 AGGDGTVGWVLGSVGELNKQ-------G-----REPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGP 221 (344)
Q Consensus 154 ~GGDGTv~eVln~L~~~~~~-------~-----~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~ 221 (344)
+||||-.||+++|+..+-+. + ....+.+||||+|++|...-+-.- ..|+.. .+|+ |+-|+
T Consensus 224 VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~g----t~D~~T---SAlH-I~lG~ 295 (516)
T KOG1115|consen 224 VGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTG----TRDPVT---SALH-IILGR 295 (516)
T ss_pred ecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEecc----CCcccc---ceee-eEecc
Confidence 99999999999998654221 0 124667999999999999877642 234432 2444 66799
Q ss_pred eeEeeeEEEEEecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHhhhhhccCC
Q 019227 222 ICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKP 299 (344)
Q Consensus 222 ~~~iD~~~v~v~~~~g~~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~f~N~~siGfDA~V~~~f~~~R~~~p 299 (344)
...+|+..+.-. ...-||-.|.+|.||-++|....++.|...|
T Consensus 296 ~l~vDVctVht~-----------------------------------~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp 338 (516)
T KOG1115|consen 296 KLFVDVCTVHTI-----------------------------------EKLIRYSASAAGYGFYGDVLSDSEKYRWMGP 338 (516)
T ss_pred ceeeeeeeeeec-----------------------------------chheeeehhhhcccccchhhhhhhhhhccCc
Confidence 999999886420 1235788899999999999999999998866
No 21
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.51 E-value=1.2e-15 Score=134.04 Aligned_cols=67 Identities=34% Similarity=0.487 Sum_probs=62.6
Q ss_pred eEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccceeeccccCCCCCCceEEeecCcc
Q 019227 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRLDICELGS 341 (344)
Q Consensus 274 ~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (344)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+.+|++++| ..+|++.+....+.||+-.
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~~~~~~~i~l~~dg~~ 67 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSCKNLPKKIELEVDGKE 67 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchhcCchhhcccccCCee
Confidence 489999999999999999999999999999999999999999999985 8899999888888898754
No 22
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.40 E-value=1.7e-12 Score=125.69 Aligned_cols=138 Identities=20% Similarity=0.123 Sum_probs=97.7
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHH-HHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEE
Q 019227 74 NGVQPPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIV 152 (344)
Q Consensus 74 ~~~~~~~~~vlvIvNP~SG~g~~~~~~~-~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IV 152 (344)
.+|..+.++++|++||.+.++.....+. ...++|.-. +|+++++ .|.+.|+|+.|++..+ ...|.|+
T Consensus 54 vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLa-G~~V~Iv-----ktd~~gqak~l~e~~~------t~~Dii~ 121 (535)
T KOG4435|consen 54 VPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLA-GVQVDIV-----KTDNQGQAKALAEAVD------TQEDIIY 121 (535)
T ss_pred CCcccccceEEEEechhhccchhhhhhhcccchheeec-cceEEEE-----ecCcHHHHHHHHHHhc------cCCCeEE
Confidence 5677888999999999998876554444 344566543 4677664 4667899999998753 3459999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCC-CcHHHHHHHHHHHHHcCCe---eEeeeE
Q 019227 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFP-FAWKSAVKRTLQRASAGPI---CRLDSW 228 (344)
Q Consensus 153 v~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~-~~~~~al~~~l~~i~~g~~---~~iD~~ 228 (344)
|+|||||++||+.|+++++ ....|++++|.|--|--..+.-.. .|. .|....+..++.++++++. .++|+-
T Consensus 122 VaGGDGT~~eVVTGi~Rrr----~~~~pv~~~P~G~~~l~~~s~l~~-vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 122 VAGGDGTIGEVVTGIFRRR----KAQLPVGFYPGGYDNLWLKSMLPS-VFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred EecCCCcHHHhhHHHHhcc----cccCceeeccCccchHhhhhhchh-hhccchHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999999863 467899999999887665443211 111 2444445555566777777 556653
No 23
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.53 E-value=8e-07 Score=84.75 Aligned_cols=123 Identities=13% Similarity=0.056 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh-ccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE-LGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~-~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
+++.+|+|+.. .+..+.++++.+.|.+.+ +++..... .+...+++...+. .. ...+.|.||++|||||
T Consensus 1 m~v~iv~~~~k--~~~~~~~~~I~~~L~~~g-~~v~v~~~---~~~~~~~~~~~~~~~~-----~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLAYRVYDFLKVSG-YEVVVDSE---TYEHLPEFSEEDVLPL-----EEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc---hhhhcCcccccccccc-----cccCCCEEEEEeCcHH
Confidence 35788888854 456678889988887654 33332110 0111111111110 10 0125689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEE
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v 232 (344)
+.++++ +.. .++|+..||+||. +|...+.. . .+..+++.+.+|....-..-.+.+
T Consensus 70 lL~a~~-~~~-------~~~pi~gIn~G~l-GFl~~~~~-----~----~~~~~l~~i~~g~~~~~~r~~l~~ 124 (277)
T PRK03708 70 ILRIEH-KTK-------KDIPILGINMGTL-GFLTEVEP-----E----ETFFALSRLLEGDYFIDERIKLRV 124 (277)
T ss_pred HHHHHH-hcC-------CCCeEEEEeCCCC-CccccCCH-----H----HHHHHHHHHHcCCceEEEeEEEEE
Confidence 999999 653 4789999999998 88887652 1 345566677888765444444444
No 24
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.46 E-value=9.6e-08 Score=83.60 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=52.4
Q ss_pred eEEEEeecchhHHHHhHhhhhhccCCcccccccCcceeeeecccceeeccccCCCCCCceEEeecCc
Q 019227 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRLDICELG 340 (344)
Q Consensus 274 ~f~N~~siGfDA~V~~~f~~~R~~~p~~~~~~~~NK~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (344)
+|+|++|+||||+|++.+++.|+++|.++++++.|++.|...+++.+ +...++..|.--.+.||+.
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l-~~~~~~~~~~~~~i~~dg~ 66 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDL-FFRTCKDLHERIELECDGV 66 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHh-hhccccchhhceEEEECCE
Confidence 48999999999999999999999999999899899999999999986 4444554332223445554
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.37 E-value=3.8e-06 Score=81.23 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=76.9
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++++|+|| |+.+..+...++.+.|.+. .+++....... .. .....+.+. .....+.||++||||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~-g~~v~v~~~~~---~~-~~~~~~~~~------~~~~~d~vi~~GGDG 68 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEAR-GCKVLMGPSGP---KD-NPYPVFLAS------ASELIDLAIVLGGDG 68 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHC-CCEEEEecCch---hh-ccccchhhc------cccCcCEEEEECCcH
Confidence 46789999999 4455566778888878654 34543321110 00 000111110 123568999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeec-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~-GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
|+.++++.+.. .++|+..|.+ |+-.=|+..-. +.. . +.+++.+.+|....-....+.+.
T Consensus 69 T~l~~~~~~~~-------~~~pv~gin~~G~lGFL~~~~~-------~~~-~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 69 TVLAAARHLAP-------HDIPILSVNVGGHLGFLTHPRD-------LLQ-D-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred HHHHHHHHhcc-------CCCCEEEEecCCcceEecCchh-------hcc-h-HHHHHHHHcCCceEEEeeEEEEE
Confidence 99999998863 4789999998 76555553211 011 1 45667788888776566665554
No 26
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.04 E-value=2.8e-05 Score=75.27 Aligned_cols=57 Identities=35% Similarity=0.327 Sum_probs=43.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh-hhhCCCCCCCCcHHHHHHHHHHHHHcC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-RSFGWGGSFPFAWKSAVKRTLQRASAG 220 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA-rsLg~~~~~~~~~~~al~~~l~~i~~g 220 (344)
..|.|+.+|||||...|++++. .++|+--||.||-|-+. ..+ .|. +..+++..+.++
T Consensus 100 gVdlIvfaGGDGTarDVa~av~--------~~vPvLGipaGvk~~SgvfA~--------~P~-~aa~l~~~~lkg 157 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAVG--------ADVPVLGIPAGVKNYSGVFAL--------SPE-DAARLLGAFLKG 157 (355)
T ss_pred CceEEEEeCCCccHHHHHhhcc--------CCCceEeeccccceecccccc--------ChH-HHHHHHHHHhcc
Confidence 5789999999999999999873 47899999999988765 222 232 344566667777
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.85 E-value=0.00018 Score=69.14 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHH-h--ccchhhhccCCCcEEEEEc
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA-E--LGDFCAKDTRQKMRIVVAG 155 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la-~--~~~~~~~~~~~~~~IVv~G 155 (344)
.++++.+|.||.. ....++.+++...|.+.+ +++...... +..+. . ...+......+.|.||+.|
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~vi~lG 71 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTHEMLYHWLTSKG-YEVIVEQQI---------AHELQLKNVKTGTLAEIGQQADLAIVVG 71 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHHHHHHHHHHHCC-CEEEEecch---------hhhcCcccccccchhhcCCCCCEEEEEC
Confidence 3677999999865 345567788888776654 333221100 00000 0 0000000123468999999
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeecCCcc-chhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEE
Q 019227 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGN-DLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (344)
Q Consensus 156 GDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgN-DfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v 232 (344)
||||+..++..+.. . .+.|||.++|| +|...+.. . .++..++.+.+|....-....+.+
T Consensus 72 GDGT~L~aa~~~~~-------~--~~Pilgin~G~lGFl~~~~~-----~----~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 72 GDGNMLGAARVLAR-------Y--DIKVIGINRGNLGFLTDLDP-----D----NALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred CcHHHHHHHHHhcC-------C--CCeEEEEECCCCCcccccCH-----H----HHHHHHHHHHcCCceEEEEEEEEE
Confidence 99999999987653 2 24578888888 77766652 2 344456667778765444444443
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.73 E-value=0.00052 Score=66.13 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=73.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++.+|+||... ...+.++++.+.|.+.. +++....... ....++....... .......+.||++||||
T Consensus 3 ~~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~g-iev~v~~~~~--~~~~~~~~~~~~~----~~~~~~~d~vi~~GGDG 73 (295)
T PRK01231 3 SFRNIGLIGRLGSS--SVVETLRRLKDFLLDRG-LEVILDEETA--EVLPGHGLQTVSR----KLLGEVCDLVIVVGGDG 73 (295)
T ss_pred CCCEEEEEecCCCH--HHHHHHHHHHHHHHHCC-CEEEEecchh--hhcCcccccccch----hhcccCCCEEEEEeCcH
Confidence 35679999998774 45677888888786643 3443321100 0000000000000 00123468999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
|+..+++.+.. ..+|+--|.+|+ +|+-..++ + +.++.+++.+.+|..+.-....+++.
T Consensus 74 t~l~~~~~~~~-------~~~Pvlgin~G~-------lGFl~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~~ 131 (295)
T PRK01231 74 SLLGAARALAR-------HNVPVLGINRGR-------LGFLTDIR--P-DELEFKLAEVLDGHYQEEERFLLEAE 131 (295)
T ss_pred HHHHHHHHhcC-------CCCCEEEEeCCc-------ccccccCC--H-HHHHHHHHHHHcCCceEEEEEEEEEE
Confidence 99999987753 467777777775 33322212 2 24556677788887665555555543
No 29
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.47 E-value=0.00057 Score=65.37 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (344)
++.|.||++|||||+-.++..+.. ..+|+--|++||-|=|+. +. +.+... +++.+.+|....-
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~-------~~~Pilgin~G~lgfl~~-~~-----~~~~~~----~l~~~~~g~~~~~ 137 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD-------YDIPILGINTGTLGFLTE-FE-----PEDIEE----ALEKILAGEYSIE 137 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT-------ST-EEEEEESSSSTSSSS-EE-----GCGHHH----HHHHHHHTHCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc-------CCCcEEeecCCCcccccc-CC-----HHHHHH----HHHHHhcCCeEEE
Confidence 567999999999999999987653 478999999998544433 32 234444 4445666766655
Q ss_pred eeEEEEE
Q 019227 226 DSWHAVI 232 (344)
Q Consensus 226 D~~~v~v 232 (344)
....+.+
T Consensus 138 ~r~~l~~ 144 (285)
T PF01513_consen 138 ERMRLEV 144 (285)
T ss_dssp EEEEEEE
T ss_pred EeeeEEE
Confidence 5555554
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.31 E-value=0.0057 Score=58.76 Aligned_cols=126 Identities=14% Similarity=0.042 Sum_probs=72.4
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 78 ~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
..++++.+|.||.. ...++.+++...|.+++ +++..... .+..+............+.|.||+.|||
T Consensus 8 ~~~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Dlvi~iGGD 74 (287)
T PRK14077 8 KNIKKIGLVTRPNV---SLDKEILKLQKILSIYK-VEILLEKE---------SAEILDLPGYGLDELFKISDFLISLGGD 74 (287)
T ss_pred ccCCEEEEEeCCcH---HHHHHHHHHHHHHHHCC-CEEEEecc---------hhhhhcccccchhhcccCCCEEEEECCC
Confidence 34778999999963 56778888888887654 23322110 0111100000000011346899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 158 GTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
||+-.++..+.. ..+|+--|-+|+ ||+=..++ + +.++.+++.+.+|....-....+.+.
T Consensus 75 GT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~y~ie~r~~L~~~ 133 (287)
T PRK14077 75 GTLISLCRKAAE-------YDKFVLGIHAGH-------LGFLTDIT--V-DEAEKFFQAFFQGEFEIEKPYMLSVF 133 (287)
T ss_pred HHHHHHHHHhcC-------CCCcEEEEeCCC-------cccCCcCC--H-HHHHHHHHHHHcCCCeEEEEEEEEEE
Confidence 999888876543 356765567776 55433222 2 24556777788887554444444443
No 31
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.20 E-value=0.0076 Score=58.39 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh---cc---------chhhhcc
Q 019227 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---LG---------DFCAKDT 145 (344)
Q Consensus 78 ~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~---~~---------~~~~~~~ 145 (344)
.+++++.+|.|+.. ....++.+++...|.+++ +++...... +..+.. .. .......
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAG-IGVRVLDAE---------AVDLGATHPAPDDFRAMEVVDADPDAA 70 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEeech---------hhhhcccccccccccccccccchhhcc
Confidence 45678999999854 345567788888776654 333221110 000000 00 0000011
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (344)
++.|.||+.|||||+-.++..+.. ..+|+--|.+|+ ||+-..++ + +.++.+++.+.+|...--
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~-------~~~PilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~y~i~ 133 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARA-------ADVPVLGVNLGH-------VGFLAEAE--A-EDLDEAVERVVDRDYRVE 133 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcc-------CCCcEEEEecCC-------CceeccCC--H-HHHHHHHHHHHcCCceEE
Confidence 346899999999999999876653 457877788887 34322211 2 235556777888887655
Q ss_pred eeEEEEE
Q 019227 226 DSWHAVI 232 (344)
Q Consensus 226 D~~~v~v 232 (344)
....+.+
T Consensus 134 ~R~~L~~ 140 (306)
T PRK03372 134 ERMTLDV 140 (306)
T ss_pred EeeeEEE
Confidence 5444443
No 32
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.15 E-value=0.0081 Score=57.80 Aligned_cols=128 Identities=17% Similarity=0.105 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++++|.|+.. ....+..+.+.+.|...+ +++...... ....+ ...+-. .. ........|.||++|||||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g-~~v~v~~~~---~~~~~-~~~~~~-~~-~~~~~~~~d~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRG-FEVVFEADT---ARNIG-LTGYPA-LT-PEEIGARADLAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecch---hhhcC-cccccc-cC-hhHhccCCCEEEEECCcHH
Confidence 567899988865 345567788888776543 343221100 00000 000000 00 0001134689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
+..++..+.. .++|+--|.+|+- |+-..++ + +.++..++.+.+|..+.-....+.+.
T Consensus 76 ~l~~~~~~~~-------~~~pilGIn~G~l-------GFL~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~~ 132 (291)
T PRK02155 76 MLGIGRQLAP-------YGVPLIGINHGRL-------GFITDIP--L-DDMQETLPPMLAGNYEEEERMLLEAR 132 (291)
T ss_pred HHHHHHHhcC-------CCCCEEEEcCCCc-------cccccCC--H-HHHHHHHHHHHcCCceEEEeEEEEEE
Confidence 9999998753 4567666777764 3322111 2 24556777788888765566665543
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.10 E-value=0.0074 Score=58.23 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccc----eee-cchhHHHHHHhccchhhhccCCCcEEEE
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHE----FVQ-YGLACLEKLAELGDFCAKDTRQKMRIVV 153 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~----~~t-~~~g~a~~la~~~~~~~~~~~~~~~IVv 153 (344)
.++++.+|.||.. ....+..+++...|.+.+ +++....... ... ...++.. . ... ......|.||+
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~D~vi~ 74 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTAHTLITFLKQHG-FTVYLDEVGIKEGCIYTQDTVGCHI--V-NKT---ELGQYCDLVAV 74 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecccccccchhccccccccc--c-chh---hcCcCCCEEEE
Confidence 4678999999865 345567888888777654 2332211000 000 0000000 0 000 01124689999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 154 ~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
.|||||+-.++..+.. ..+|+--|-+|+ ||+-..++ + +.++..++.+.+|+...-....+.+.
T Consensus 75 lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~~~~~~r~~l~~~ 137 (296)
T PRK04539 75 LGGDGTFLSVAREIAP-------RAVPIIGINQGH-------LGFLTQIP--R-EYMTDKLLPVLEGKYLAEERILIEAA 137 (296)
T ss_pred ECCcHHHHHHHHHhcc-------cCCCEEEEecCC-------CeEeeccC--H-HHHHHHHHHHHcCCceEEEeeeEEEE
Confidence 9999999999876653 356766677776 55543322 2 23555677788887655555555443
No 34
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.00 E-value=0.014 Score=56.57 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecc-cceeecchhH-----HHHHHhccchhhhccCCCcEEEE
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFVQYGLAC-----LEKLAELGDFCAKDTRQKMRIVV 153 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~-~~~~t~~~g~-----a~~la~~~~~~~~~~~~~~~IVv 153 (344)
|+++.+|+|+.. ....++.+++...|.+.+ +++..... ..... .... ..++.. .. ......+.|.||+
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAG-WEVVRASSSGGILG-YANPDQPVCHTGIDQ-LV-PPGFDSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchhhhcC-ccccccccccccccc-cC-hhhcccCcCEEEE
Confidence 457899999844 345667888888787654 33322110 00000 0000 000000 00 0001124689999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 154 ~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
.|||||+-.++..+.. ..+|+--|-+|+ ||+=..+ ++ +.+...++.+.+|...--..-.+.+.
T Consensus 75 iGGDGTlL~aar~~~~-------~~iPilGIN~G~-------lGFLt~~--~~-~~~~~~l~~l~~g~y~ie~r~~L~~~ 137 (305)
T PRK02649 75 LGGDGTVLSAARQLAP-------CGIPLLTINTGH-------LGFLTEA--YL-NQLDEAIDQVLAGQYTIEERTMLTVS 137 (305)
T ss_pred EeCcHHHHHHHHHhcC-------CCCcEEEEeCCC-------CcccccC--CH-HHHHHHHHHHHcCCcEEEEeeeEEEE
Confidence 9999999999876653 456765567775 5542221 22 24566777788888665555555443
No 35
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.98 E-value=0.015 Score=55.95 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=70.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHH---------hccchhhhccCCCcEE
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA---------ELGDFCAKDTRQKMRI 151 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la---------~~~~~~~~~~~~~~~I 151 (344)
+++.+|+||.. ....++.+++.+.|.+.+ +++..... .+..+. ...+......+..|.|
T Consensus 1 m~igii~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 68 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYIQELFDELEERG-AEVLIEEK---------FLDFLKQDLKFHPSYDTFSDNEELDGSADMV 68 (292)
T ss_pred CEEEEEeCCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc---------hhhhhccccccccccccccchhhcccCCCEE
Confidence 35788888854 345567788888776654 23322110 001000 0000000011246899
Q ss_pred EEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEE
Q 019227 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (344)
Q Consensus 152 Vv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (344)
|+.|||||+-.++..+.. ..+|+--|-+|+ ||+=..++ + +.++.+++.+.+|....-....++
T Consensus 69 i~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~ 131 (292)
T PRK01911 69 ISIGGDGTFLRTATYVGN-------SNIPILGINTGR-------LGFLATVS--K-EEIEETIDELLNGDYTIEERSLLQ 131 (292)
T ss_pred EEECCcHHHHHHHHHhcC-------CCCCEEEEecCC-------CCcccccC--H-HHHHHHHHHHHcCCceEEEEeeEE
Confidence 999999999998876653 356766677777 55533222 2 245667778888887655555555
Q ss_pred Ee
Q 019227 232 IQ 233 (344)
Q Consensus 232 v~ 233 (344)
+.
T Consensus 132 ~~ 133 (292)
T PRK01911 132 LE 133 (292)
T ss_pred EE
Confidence 43
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.87 E-value=0.017 Score=54.78 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++.+|.|+.. .+.++.+++...|.+.+ +++.. . ..+.|.||+.|||||
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g-~~~~~-------~-------------------~~~~D~vi~lGGDGT 51 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYG-FTVVD-------H-------------------PKNANIIVSIGGDGT 51 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCC-CEEEc-------C-------------------CCCccEEEEECCcHH
Confidence 346788888776 45667888888887643 23211 0 123579999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEE
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~-GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v 232 (344)
+=.++..+... ..+|+--|.+ | .||+=..++ + +.+++.++.+.+|+...-....+.+
T Consensus 52 ~L~a~~~~~~~------~~~pilgIn~~G-------~lGFL~~~~--~-~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 52 FLQAVRKTGFR------EDCLYAGISTKD-------QLGFYCDFH--I-DDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHHHhccc------CCCeEEeEecCC-------CCeEcccCC--H-HHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 98888765421 2456434555 5 345433222 2 2456677778888865444444444
No 37
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.81 E-value=0.022 Score=58.37 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecc-ccee-ec--chhHHHHHHhccchhhhccCCCcEEEEE
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFV-QY--GLACLEKLAELGDFCAKDTRQKMRIVVA 154 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~-~~~~-t~--~~g~a~~la~~~~~~~~~~~~~~~IVv~ 154 (344)
++++++||.||.. ....++..++...|.+...+++..... .... .. ..+.. ..............+.|.||+.
T Consensus 193 ~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~DlVIsi 269 (508)
T PLN02935 193 DPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFV-QTWEDEKEILLLHTKVDLVITL 269 (508)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEEEechhhhhhcccccccccc-ccccccchhhhcccCCCEEEEE
Confidence 3788999999865 344567778877776322233322110 0000 00 00000 0000000000011346899999
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEE
Q 019227 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (344)
Q Consensus 155 GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v 232 (344)
|||||+=.++..+.. ..+|+--|.+|+ ||+=..+ ++ ..++.+|+.+.+|....-..-.+.+
T Consensus 270 GGDGTlL~Aar~~~~-------~~iPILGIN~G~-------LGFLt~i--~~-~e~~~~Le~il~G~y~Ie~R~~L~~ 330 (508)
T PLN02935 270 GGDGTVLWAASMFKG-------PVPPVVPFSMGS-------LGFMTPF--HS-EQYRDCLDAILKGPISITLRHRLQC 330 (508)
T ss_pred CCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------cceeccc--CH-HHHHHHHHHHHcCCceEEEEeEEEE
Confidence 999999999876643 356665566665 3432221 12 2456677778888766544444443
No 38
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.08 E-value=0.1 Score=54.75 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccch---hhhccCCCcEEEEEc
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDF---CAKDTRQKMRIVVAG 155 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~---~~~~~~~~~~IVv~G 155 (344)
+.+++.+|.||.. ....++..++...|.+.+ +++..... .+..+...... ......+.|.||+.|
T Consensus 289 ~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~dlvi~lG 356 (569)
T PRK14076 289 KPTKFGIVSRIDN--EEAINLALKIIKYLDSKG-IPYELESF---------LYNKLKNRLNEECNLIDDIEEISHIISIG 356 (569)
T ss_pred CCcEEEEEcCCCC--HHHHHHHHHHHHHHHHCC-CEEEEech---------hhhhhcccccccccccccccCCCEEEEEC
Confidence 4456888888753 345567788888776544 23322110 01111100000 000122468999999
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEE
Q 019227 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (344)
Q Consensus 156 GDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (344)
||||+=.++..+.. ..+|+--|-+|+ ||+-..+ ++ +.+...++.+.+|...--..-.+.
T Consensus 357 GDGT~L~aa~~~~~-------~~~PilGin~G~-------lGFL~~~--~~-~~~~~~l~~~~~g~~~i~~r~~L~ 415 (569)
T PRK14076 357 GDGTVLRASKLVNG-------EEIPIICINMGT-------VGFLTEF--SK-EEIFKAIDSIISGEYEIEKRTKLS 415 (569)
T ss_pred CcHHHHHHHHHhcC-------CCCCEEEEcCCC-------CCcCccc--CH-HHHHHHHHHHHcCCceEEEeEEEE
Confidence 99999999876543 457777788887 4443322 22 245567777888886544444444
No 39
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.05 E-value=0.12 Score=48.93 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=41.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHH-HHHHHHcCCeeEe
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKR-TLQRASAGPICRL 225 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~-~l~~i~~g~~~~i 225 (344)
..|.||+.|||||+=.++..+.. .++|+--|.+|+ +|+=..+ ++.+ ++. +++.+.+.+....
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~-------~~iPilGIN~G~-------lGFL~~~--~~~~-~~~~~~~~l~~~~~~~r 95 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNC-------AGCKVVGINTGH-------LGFYTSF--NETD-LDQNFANKLDQLKFTQI 95 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcC-------CCCcEEEEecCC-------Ccccccc--CHHH-HHHHHHHHHhhCCeEEE
Confidence 46899999999999988876543 467776678875 5543322 2222 333 5555554554444
Q ss_pred eeEEEEE
Q 019227 226 DSWHAVI 232 (344)
Q Consensus 226 D~~~v~v 232 (344)
.+-++.+
T Consensus 96 ~~L~~~~ 102 (259)
T PRK00561 96 DLLEVQI 102 (259)
T ss_pred EEEEEEE
Confidence 4444443
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.91 E-value=0.21 Score=47.19 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
+++.++.+|. +.+..++++..|.+.+ +.+.... . .. . ...+.|.||+.|||||+
T Consensus 1 m~~~~~~~~~-----~~~~~~~~~~~l~~~~-~~~~~~~-------~---~~---~-------~~~~~d~vi~iGGDGT~ 54 (256)
T PRK14075 1 MKLGIFYREE-----KEKEAKFLKEKISKEH-EVVEFCE-------A---SA---S-------GKVTADLIIVVGGDGTV 54 (256)
T ss_pred CEEEEEeCcc-----HHHHHHHHHHHHHHcC-CeeEeec-------c---cc---c-------ccCCCCEEEEECCcHHH
Confidence 3566665555 4467778888777643 2221100 0 00 0 02345899999999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
=.++..+ .+|+--|.+|+ +|+-..+ ++ +.++.+++.+.+|.........+.+.
T Consensus 55 L~a~~~~----------~~Pilgin~G~-------lGfl~~~--~~-~~~~~~l~~~~~g~~~~~~r~~l~~~ 107 (256)
T PRK14075 55 LKAAKKV----------GTPLVGFKAGR-------LGFLSSY--TL-EEIDRFLEDLKNWNFREEKRWFLKIE 107 (256)
T ss_pred HHHHHHc----------CCCEEEEeCCC-------Ccccccc--CH-HHHHHHHHHHHcCCcEEEEeeEEEEE
Confidence 8887543 35655566665 5553322 22 34666778888898776666666554
No 41
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.81 E-value=0.15 Score=48.52 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 019227 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (344)
Q Consensus 82 ~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~ 161 (344)
++.+|.|+ ..++.++.+++...|...+ +++. .++.|.||+.|||||+=
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g-~~~~----------------------------~~~~Dlvi~iGGDGT~L 49 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFG-FILD----------------------------EKNPDIVISVGGDGTLL 49 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcC-CccC----------------------------CcCCCEEEEECCcHHHH
Confidence 47777773 3346677888888776532 2210 12457999999999999
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEE
Q 019227 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (344)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (344)
.++..+... ..++|+--|.+|+-.=|+ .+ ++ +.++.+++.+.+|+......-.++
T Consensus 50 ~a~~~~~~~-----~~~iPilGIN~G~lGFL~-~~--------~~-~~~~~~l~~i~~g~y~i~~r~~L~ 104 (265)
T PRK04885 50 SAFHRYENQ-----LDKVRFVGVHTGHLGFYT-DW--------RP-FEVDKLVIALAKDPGQVVSYPLLE 104 (265)
T ss_pred HHHHHhccc-----CCCCeEEEEeCCCceecc-cC--------CH-HHHHHHHHHHHcCCceEEEEeeEE
Confidence 988766531 135676667777633222 11 12 235566777888876554443333
No 42
>PLN02727 NAD kinase
Probab=95.32 E-value=0.17 Score=55.37 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=66.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHH--hcc--------chhhhccCC
Q 019227 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA--ELG--------DFCAKDTRQ 147 (344)
Q Consensus 78 ~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la--~~~--------~~~~~~~~~ 147 (344)
.++++++||.++.. ........+...|..+..+++.+. +. .+..+. ... .........
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE-~~--------~a~~l~~~~~~~~~~~~~~~~~~el~~~ 743 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVE-PD--------VHDIFARIPGFGFVQTFYSQDTSDLHER 743 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEe-cc--------hHHHhhccccccccceecccchhhcccC
Confidence 45788999999976 344566777777765423343321 11 011110 000 000001124
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 019227 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (344)
Q Consensus 148 ~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~ 222 (344)
.|.||+.|||||+=.++..+.. ..+||--|-+|+ ||+=..+ ++. .+...|+.+++|..
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~-------~~iPILGINlGr-------LGFLTdi--~~e-e~~~~L~~Il~G~y 801 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRG-------AVPPVVSFNLGS-------LGFLTSH--YFE-DFRQDLRQVIHGNN 801 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcC-------CCCCEEEEeCCC-------ccccccC--CHH-HHHHHHHHHHcCCc
Confidence 6899999999999999887653 456776678884 5653322 232 34556666777764
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.68 E-value=0.63 Score=44.39 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 019227 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (344)
Q Consensus 82 ~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~ 161 (344)
++.+|+||.. ....++..++...|. .+ +++..... .+..+....... ... +.|.||+.|||||+=
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~g-~~~~~~~~---------~~~~~~~~~~~~-~~~-~~D~vi~lGGDGT~L 66 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-PD-WEIIYEME---------AAKALGMDGLDI-EEI-NADVIITIGGDGTIL 66 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-cC-CEEEEech---------hhhhcCcccCcc-ccc-CCCEEEEEcCcHHHH
Confidence 5888889754 345567778877673 33 33322110 011110000000 011 468999999999987
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeEEEEEe
Q 019227 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~~~v~v~ 233 (344)
.++..+ ..|+--|-+|+- |+-..++ + +.+...++.+.+|....-....+.+.
T Consensus 67 ~a~~~~----------~~PilGIN~G~l-------GFL~~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~~~ 118 (271)
T PRK01185 67 RTLQRA----------KGPILGINMGGL-------GFLTEIE--I-DEVGSAIKKLIRGEYFIDERMKLKVY 118 (271)
T ss_pred HHHHHc----------CCCEEEEECCCC-------ccCcccC--H-HHHHHHHHHHHcCCcEEEEeeEEEEE
Confidence 776532 125544577763 4332222 2 24556677788887665555555543
No 44
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=94.32 E-value=0.78 Score=43.87 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (344)
+..+.|++.|||||+-.++..+.. ..+|+--|-.|+ ||+=..++ .+.++++++.+.+++.+-.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------~~~pilgin~G~-------lGFLt~~~---~~~~~~~~~~~~~~~~~~~ 116 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------LDIPVLGINLGH-------LGFLTDFE---PDELEKALDALLEGEYRIE 116 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------CCCCEEEEeCCC-------cccccccC---HHHHHHHHHHHhcCceEEE
Confidence 457899999999999999987764 346666666664 55544333 2467777888888877766
Q ss_pred eeEEEEEec
Q 019227 226 DSWHAVIQM 234 (344)
Q Consensus 226 D~~~v~v~~ 234 (344)
....+.+..
T Consensus 117 ~r~~l~~~v 125 (281)
T COG0061 117 ERLLLEVSV 125 (281)
T ss_pred EeEEEEEEE
Confidence 666666543
No 45
>PLN02929 NADH kinase
Probab=94.05 E-value=0.31 Score=47.19 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCc---------cch--hhhhCCCCCCCCcHHHHHHHHH
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG---------NDL--SRSFGWGGSFPFAWKSAVKRTL 214 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTg---------NDf--ArsLg~~~~~~~~~~~al~~~l 214 (344)
...|.||++|||||+-.++..+ . ..+|+-=|-.|+. |.| .|++|+=..+. + +.++++|
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~--~-~~~~~~L 131 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT--A-EDFEQVL 131 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------CCCcEEEEECCCcccccccccccccccccCccccccCC--H-HHHHHHH
Confidence 4568999999999999888765 3 3456555666741 333 35777644322 2 3567778
Q ss_pred HHHHcCCeeEeeeEEEEEe
Q 019227 215 QRASAGPICRLDSWHAVIQ 233 (344)
Q Consensus 215 ~~i~~g~~~~iD~~~v~v~ 233 (344)
+.+.+|....-.+-.+.+.
T Consensus 132 ~~il~g~~~~~~r~~L~~~ 150 (301)
T PLN02929 132 DDVLFGRLKPTELSRISTV 150 (301)
T ss_pred HHHHcCCceEEEeeeEEEE
Confidence 8888897666555555554
No 46
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.80 E-value=0.39 Score=45.85 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc-CCeeEe
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA-GPICRL 225 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~-g~~~~i 225 (344)
+.|.||+.|||||+-.++..+.. .++|+--|.+|+ +|+=..+ ++.+ +...++.+.+ |...--
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~-------~~~PilgIn~G~-------lGFL~~~--~~~~-~~~~l~~~~~~g~~~i~ 104 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK-------YDIPLIGINRGN-------LGFLTDI--DPKN-AYEQLEACLERGEFFVE 104 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------CcccccC--CHHH-HHHHHHHHHhcCCceEE
Confidence 46899999999999988876643 356655567777 5543322 2333 2334444555 654433
Q ss_pred eeEEEEE
Q 019227 226 DSWHAVI 232 (344)
Q Consensus 226 D~~~v~v 232 (344)
....+.+
T Consensus 105 ~r~~L~~ 111 (272)
T PRK02231 105 ERFLLEA 111 (272)
T ss_pred EeeeEEE
Confidence 4444443
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.92 E-value=0.25 Score=46.48 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCC
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GT 188 (344)
++.|.||+.|||||+-.++..+.. ..+|+--|.+|+
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~-------~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMN-------SGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcC-------CCCeEEEEeCCC
Confidence 456899999999999998876553 356766677776
No 48
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=86.91 E-value=0.62 Score=45.29 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEe--ecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 019227 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAII--PLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (344)
Q Consensus 145 ~~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgII--P~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~ 222 (344)
+...|.||-+|||||+-.+..-+.. ...|-|||= |.|+---++ ++..||.++..++.+ +..|.-
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~------~~~PViGvNtDP~~Seg~lc----L~~~~~~n~~~al~k----~~sgnF 168 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVID------DSKPVIGVNTDPTGSEGHLC----LPDKYPSNPAGALCK----LTSGNF 168 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhc------cCCceeeecCCCCcCcceEe----ccccCCCCcHHHHHH----HHhccH
Confidence 3456899999999999887774443 244556653 556554443 455567666666554 566777
Q ss_pred eEeeeEEEEEec
Q 019227 223 CRLDSWHAVIQM 234 (344)
Q Consensus 223 ~~iD~~~v~v~~ 234 (344)
..+-.-+|..++
T Consensus 169 ~wv~r~rir~tv 180 (395)
T KOG4180|consen 169 EWVLRQRIRGTV 180 (395)
T ss_pred HHhhhheeEEEE
Confidence 766666666554
No 49
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=83.22 E-value=2.2 Score=42.51 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=45.0
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (344)
+..|.||..||||||--+..-.. ...||+--+-+|| ||+=..|+. +..++.+..+.+++..-.
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq-------~~VPPV~sFslGs-------lGFLtpf~f---~~f~~~l~~v~~~~~~v~ 229 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQ-------RSVPPVLSFSLGS-------LGFLTPFPF---ANFQEQLARVLNGRAAVN 229 (409)
T ss_pred cceeEEEEecCCccEEEehhhhc-------CCCCCeEEeecCC-------ccccccccH---HHHHHHHHHHhcCcceEe
Confidence 34689999999999987765433 2467877777774 676554443 356667777888884433
Q ss_pred eeEEEE
Q 019227 226 DSWHAV 231 (344)
Q Consensus 226 D~~~v~ 231 (344)
=.-+++
T Consensus 230 lR~RL~ 235 (409)
T KOG2178|consen 230 LRMRLR 235 (409)
T ss_pred eeeeEE
Confidence 333333
No 50
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.39 E-value=7.7 Score=37.98 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~-~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++||..+.+- ....+++...|+..++ + .+....+.. .....+++++.+. ..+.|.||++|| |
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGES----TYENVERLKKNPA-----VQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCC----CHHHHHHHHHHHh-----hcCCCEEEEeCC-c
Confidence 678888765443 2346778888876543 2 122222221 1123344433221 246789999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeec--CCccch
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~--GTgNDf 192 (344)
++..+.-.+... ..+|+..||. |||--.
T Consensus 89 s~~D~aK~ia~~------~~~p~i~VPTt~gtgse~ 118 (345)
T cd08171 89 KAIDTVKVLADK------LGKPVFTFPTIASNCAAV 118 (345)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCccccCccc
Confidence 888888776542 2578999996 555433
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=81.34 E-value=8.4 Score=38.32 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+..+.+-... ..++++...|.+.+. +.+ ....+.. ......+.++.+. ..+.|.||++||
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 93 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNP----TVDQVDEAAKLGR-----EFGAQAVIAIGG- 93 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 3788888877654322 245677777765432 211 1122211 1123344443321 135689999998
Q ss_pred hHHHHHHHHHhhcc---c----------CCCCCCCcEEEeec--CCccchhhh
Q 019227 158 GTVGWVLGSVGELN---K----------QGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 158 GTv~eVln~L~~~~---~----------~~~~~~~plgIIP~--GTgNDfArs 195 (344)
|++..+.-.+...- . ......+|+..||. |||...++.
T Consensus 94 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~ 146 (383)
T cd08186 94 GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRF 146 (383)
T ss_pred ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCe
Confidence 56666665542210 0 00123579999997 887665543
No 52
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=81.20 E-value=10 Score=37.64 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++||..+.+-. ...++++...|.+.+. +. +....+.. ......+.++.+. ..+.|.||++||
T Consensus 23 ~~r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 89 (375)
T cd08194 23 GKRPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEP----TDESVEEGVKLAK-----EGGCDVIIALGG- 89 (375)
T ss_pred CCeEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788888665532 1256677888876542 22 11122221 1123344443321 245689999998
Q ss_pred hHHHHHHHHHhh---ccc---------CCCCCCCcEEEeec--CCccchh
Q 019227 158 GTVGWVLGSVGE---LNK---------QGREPVPPVAIIPL--GTGNDLS 193 (344)
Q Consensus 158 GTv~eVln~L~~---~~~---------~~~~~~~plgIIP~--GTgNDfA 193 (344)
|++..+.-.+.- .+. ......+|+..||. |||--..
T Consensus 90 GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 90 GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 666666554421 100 00124579999995 6765543
No 53
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.17 E-value=9.8 Score=37.24 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++||..+.. .+.+.+++...|.... +.+.... .+ -.....+++++.+. ..+.|.||++|| |++
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~-~~~~~~~-~~---p~~~~v~~~~~~~~-----~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGE-AFVLRYD-GE---CSEENIERLAAQAK-----ENGADVIIGIGG-GKV 88 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCe-EEEEEeC-CC---CCHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 68888888776 2346677777774332 2222111 01 11234445444321 235688999988 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeec--CCccchh
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~--GTgNDfA 193 (344)
..+.-.+... ..+|+..||. |||-..+
T Consensus 89 ~D~aK~ia~~------~~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 89 LDTAKAVADR------LGVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHHHHHHHHH------hCCCEEEecCccccCcccc
Confidence 8888777543 3579999995 6765555
No 54
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=80.92 E-value=10 Score=37.04 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++|+.-+.+ .+...+++...|...++ +.+....+..- .....+.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p~----~~~v~~~~~~~~-----~~~~D~IIavGG-GS 88 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGECT----RAEIERLAEIAR-----DNGADVVIGIGG-GK 88 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcCC----HHHHHHHHHHHh-----hcCCCEEEEecC-ch
Confidence 67777763333 22467788888876542 22222222211 123444444321 246789999998 67
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec--CCccchhh
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~--GTgNDfAr 194 (344)
+..+.-.+.-. ..+|+..||. |||--.+.
T Consensus 89 ~iD~aK~ia~~------~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 89 TLDTAKAVADY------LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred hhHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 77777666432 3579999996 67665544
No 55
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=80.60 E-value=5 Score=39.67 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=53.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++|+..+..- ....+.+...|..... +.+......+ .........++++.+.+ ...+..+.||++|| |+
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e-~~k~~~~v~~~~~~~~~--~~~dr~~~IIAvGG-Gs 95 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGE-EHKTLSTLSDLVERALA--LGATRRSVIVALGG-GV 95 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCcEEEEECC-cH
Confidence 678888876532 2255677777765432 2222111100 01112334444433211 11234458888876 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec--CCccc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~--GTgND 191 (344)
+..+...+.... ...+|+..||. |++.|
T Consensus 96 v~D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 96 VGNIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 888887664321 13579999998 66766
No 56
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.96 E-value=13 Score=32.31 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHHHHHHHHHhh
Q 019227 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTVGWVLGSVGE 169 (344)
Q Consensus 92 G~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~-~~IVv~GGDGTv~eVln~L~~ 169 (344)
|+..-....++....|++.++ |++.+...+ ..+..+.+++++.. .+.. -.|.++|+++-+--++.++..
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saH----R~p~~l~~~~~~~~-----~~~~~viIa~AG~~a~Lpgvva~~t~ 78 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAH----RTPERLLEFVKEYE-----ARGADVIIAVAGMSAALPGVVASLTT 78 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TT----TSHHHHHHHHHHTT-----TTTESEEEEEEESS--HHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEecc----CCHHHHHHHHHHhc-----cCCCEEEEEECCCcccchhhheeccC
Confidence 333334567788888888775 787765432 12345566665532 1122 467788999999999998863
Q ss_pred cccCCCCCCCcEEEeecCCc
Q 019227 170 LNKQGREPVPPVAIIPLGTG 189 (344)
Q Consensus 170 ~~~~~~~~~~plgIIP~GTg 189 (344)
.|-||+ |.-++
T Consensus 79 --------~PVIgv-P~~~~ 89 (150)
T PF00731_consen 79 --------LPVIGV-PVSSG 89 (150)
T ss_dssp --------S-EEEE-EE-ST
T ss_pred --------CCEEEe-ecCcc
Confidence 344555 75443
No 57
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=78.73 E-value=14 Score=36.47 Aligned_cols=103 Identities=16% Similarity=0.278 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++|+.-+.+-... ..++++...|...+. +.+ ....+.. ......+.++.+. ..+.|.||++|| |
T Consensus 26 ~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENP----SLETIMEAVEIAK-----KFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 788888777653322 244566666765432 221 1122221 1123344443321 235689999998 6
Q ss_pred HHHHHHHHHhhc---c--------cCCCCCCCcEEEeec--CCccchhhh
Q 019227 159 TVGWVLGSVGEL---N--------KQGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 159 Tv~eVln~L~~~---~--------~~~~~~~~plgIIP~--GTgNDfArs 195 (344)
++..+.-.+.-. + .......+|+..||. |||...++.
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 677766544210 0 001124579999996 888777763
No 58
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=77.45 E-value=14 Score=37.10 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=62.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GG 156 (344)
..++.+|+--|.-- ...+.+++.+.|+..++ |.+ ..+.|.+-. ...++-++.+. ..+.|.||+.||
T Consensus 28 g~~r~liVTd~~~~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~----~~v~~~~~~~~-----~~~~D~iIalGG 95 (377)
T COG1454 28 GAKRALIVTDRGLA---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI----ETVEAGAEVAR-----EFGPDTIIALGG 95 (377)
T ss_pred CCCceEEEECCccc---cchhHHHHHHHHHhcCCeEEEecCCCCCCCH----HHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 45788888877622 22477888888888762 222 223333221 12232222221 246799999999
Q ss_pred chHHHHHHHHHhhcccCC------------CCCCCcEEEee--cCCccchhhhhCCC
Q 019227 157 DGTVGWVLGSVGELNKQG------------REPVPPVAIIP--LGTGNDLSRSFGWG 199 (344)
Q Consensus 157 DGTv~eVln~L~~~~~~~------------~~~~~plgIIP--~GTgNDfArsLg~~ 199 (344)
|++-.++-.+.-..... ..+.+||-.|| .|||....+..-+.
T Consensus 96 -GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVit 151 (377)
T COG1454 96 -GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVIT 151 (377)
T ss_pred -ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEEE
Confidence 66666665543221100 23448999999 59998888776653
No 59
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=76.86 E-value=16 Score=36.13 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++|+..+.+. .++++...|....+ +.+....+.. + .....+.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p--~--~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 86 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEP--S--VELVDAAVAEAR-----NAGCDVVIAIGG-GS 86 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCc--C--HHHHHHHHHHHH-----hcCCCEEEEecC-ch
Confidence 688888776553 56677777766432 2221112211 1 123344443321 246789999998 66
Q ss_pred HHHHHHHHhhc---cc--------C-----CCCCCCcEEEeec--CCccchhh
Q 019227 160 VGWVLGSVGEL---NK--------Q-----GREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 160 v~eVln~L~~~---~~--------~-----~~~~~~plgIIP~--GTgNDfAr 194 (344)
+..+.-.+.-. +. . .....+|+..||. |||.-..+
T Consensus 87 ~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 87 VIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 66665544211 00 0 0124579999995 67665443
No 60
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=74.87 E-value=18 Score=35.92 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~-~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++||.-+.+.... .+++++...|...+. + .+..+.+..- .....+.++.+. ..+.|.||++|| |
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG-G 96 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPR----LETVREGIELCK-----EEKVDFILAVGG-G 96 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-h
Confidence 688888766554322 345677777765432 2 1222222211 122333333221 246789999998 6
Q ss_pred HHHHHHHHHhhcc------------cCCCCCCCcEEEeec--CCccchhhh
Q 019227 159 TVGWVLGSVGELN------------KQGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 159 Tv~eVln~L~~~~------------~~~~~~~~plgIIP~--GTgNDfArs 195 (344)
++..+.-.+.-.- .......+|+-.||. |||-...+.
T Consensus 97 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~ 147 (382)
T cd08187 97 SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGG 147 (382)
T ss_pred HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCC
Confidence 6666665542210 000124579999995 777555543
No 61
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=74.43 E-value=12 Score=36.88 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhh-cCe--eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGK-EQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~-~~~--~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GG 156 (344)
.++++|+..+..-. ...+++...|.. ... +.+...++ ......+.++.+.+.+ ....+.+.||++||
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~--~~~~r~d~IIaiGG 92 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIA--LGANRRTAIVAVGG 92 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 36788888755432 355677777754 222 11211111 1122334444433211 01234688888887
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeec--CCccc
Q 019227 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (344)
Q Consensus 157 DGTv~eVln~L~~~~~~~~~~~~plgIIP~--GTgND 191 (344)
|++..+...+.... ...+|+-.||. ++++|
T Consensus 93 -Gsv~D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 93 -GATGDVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred -cHHHHHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 78888876664321 13578999997 44444
No 62
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=74.17 E-value=21 Score=35.42 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++||.-+.+-.. ..+++++...|.+.+. +. +..+.+..- ....++.++.+. ..+.|.||++|| |
T Consensus 26 ~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNPT----TTTVMEGAALAR-----EEGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-c
Confidence 78899987765211 2366777777765432 22 222222211 123334333221 236789999998 5
Q ss_pred HHHHHHHHHhhcc---c--------------CCCCCCCcEEEeec--CCccchhhhh
Q 019227 159 TVGWVLGSVGELN---K--------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 159 Tv~eVln~L~~~~---~--------------~~~~~~~plgIIP~--GTgNDfArsL 196 (344)
++..+.-.+.-.- . ......+|+..||. |||.-..+.-
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~a 150 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWA 150 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeE
Confidence 6666655442210 0 00124579999995 8876555443
No 63
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=74.12 E-value=21 Score=35.32 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+..+..-. ...++++...|...+. +. +..+.+..- .....+.++.+. ..+.|.||++||
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPT----IENVEAGLALYR-----ENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36888887654422 1245677777765432 22 112222111 122333333221 235689999998
Q ss_pred hHHHHHHHHHhhc---cc----------CCCCCCCcEEEeec--CCccchhhh
Q 019227 158 GTVGWVLGSVGEL---NK----------QGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 158 GTv~eVln~L~~~---~~----------~~~~~~~plgIIP~--GTgNDfArs 195 (344)
|++..+.-.+.-. .. ......+|+..||. |||-...+.
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 5565555443211 00 00123479999995 777655443
No 64
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=73.77 E-value=19 Score=35.74 Aligned_cols=103 Identities=14% Similarity=0.279 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~-~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++|+..+..-. ...++++...|....+ +.+. .+.+.. .....+++++.+. ..+.|.||++|| |
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNP----TITNVKDGLAVFK-----KEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 6778776654422 1356677777765432 2211 122111 1122344443321 235789999998 5
Q ss_pred HHHHHHHHHhhc---c---------cCCCCCCCcEEEeec--CCccchhhhh
Q 019227 159 TVGWVLGSVGEL---N---------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 159 Tv~eVln~L~~~---~---------~~~~~~~~plgIIP~--GTgNDfArsL 196 (344)
++..+.-.+.-. + .......+|+..||. |||-...+.-
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~a 147 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINY 147 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcE
Confidence 666655444210 0 001124579999996 8887665443
No 65
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=73.63 E-value=12 Score=36.16 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~-~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++||..+..-. ...+++...|.+. .+..+....+.. ......++++.+. ..+.|.||++|| |
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 88 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNP----TFEEVKEAVERAR-----AAEVDAVIAVGG-G 88 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-c
Confidence 36788888655533 3556677777643 111111112211 1233455554331 135788888887 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeec--CCc
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~--GTg 189 (344)
++..+.-.+.... ...+|+..||. |||
T Consensus 89 s~~D~aK~ia~~~----~~~~p~i~iPTt~~tg 117 (332)
T cd07766 89 STLDTAKAVAALL----NRGLPIIIVPTTAATG 117 (332)
T ss_pred hHHHHHHHHHHHh----cCCCCEEEEeCCCchh
Confidence 8888887765431 13689999996 665
No 66
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=72.17 E-value=5.5 Score=40.21 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=37.8
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccC-CC--CCCCcEEEeecCCccchhhhhCC
Q 019227 148 KMRIVVAGGDGTVGWVLGSVGELNKQ-GR--EPVPPVAIIPLGTGNDLSRSFGW 198 (344)
Q Consensus 148 ~~~IVv~GGDGTv~eVln~L~~~~~~-~~--~~~~plgIIP~GTgNDfArsLg~ 198 (344)
...|+++|||--++.|+-..++.-.. .. ..-+.+-|||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 45799999999999999887653211 01 1345689999999 999999964
No 67
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=72.05 E-value=27 Score=34.06 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
.++++||..+.... ...+++...|.+.+.+.+. ..+.. ......++.+.+. ..+.|.||++|| |+
T Consensus 25 ~~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~-~~~~~----~~~~v~~~~~~~~-----~~~~d~iIaiGG-Gs 89 (339)
T cd08173 25 GGRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVV-IVEDA----TYEEVEKVESSAR-----DIGADFVIGVGG-GR 89 (339)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCeEEE-EeCCC----CHHHHHHHHHHhh-----hcCCCEEEEeCC-ch
Confidence 36788888765432 3667778777654312111 12211 1234455554432 135689999987 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecC
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLG 187 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~G 187 (344)
+..+.-.+.-. ..+|+..||.=
T Consensus 90 ~~D~aK~~a~~------~~~p~i~iPTT 111 (339)
T cd08173 90 VIDVAKVAAYK------LGIPFISVPTA 111 (339)
T ss_pred HHHHHHHHHHh------cCCCEEEecCc
Confidence 88888777532 45799999963
No 68
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=71.91 E-value=25 Score=34.68 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++|+..+..-. ...++++.+.|.+.+. +. +....+.. ......+.++.+. ..+.|.||++|| |
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 91 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNP----TEAAVEAGLAAYR-----AGGCDGVIAFGG-G 91 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5778876654421 1245677777765432 21 11122221 1122344443321 245789999998 6
Q ss_pred HHHHHHHHHhhccc----------------CCCCCCCcEEEeec--CCccchh
Q 019227 159 TVGWVLGSVGELNK----------------QGREPVPPVAIIPL--GTGNDLS 193 (344)
Q Consensus 159 Tv~eVln~L~~~~~----------------~~~~~~~plgIIP~--GTgNDfA 193 (344)
++..+.-.+.-... ......+|+..||. |||-...
T Consensus 92 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 144 (370)
T cd08192 92 SALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVG 144 (370)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhC
Confidence 67776655432100 00123479999996 6654443
No 69
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=71.63 E-value=21 Score=35.29 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++|+.-+.+-.. ...++++...|.+.+. +. +..+.+.. ......+.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~~--~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 91 (375)
T cd08179 24 KKAFIVTGGGSMKK--FGFLDKVEAYLKEAGIEVEVFEGVEPDP----SVETVLKGAEAMR-----EFEPDWIIALGG-G 91 (375)
T ss_pred CeEEEEeCchHHHh--CChHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 67777765543221 1356677777765432 21 11122221 1122333333221 235689999998 5
Q ss_pred HHHHHHHHHh---hccc------------CCCCCCCcEEEeec--CCccchhhh
Q 019227 159 TVGWVLGSVG---ELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 159 Tv~eVln~L~---~~~~------------~~~~~~~plgIIP~--GTgNDfArs 195 (344)
++..+.-.+. ..+. ......+|+..||. |||--....
T Consensus 92 SviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~ 145 (375)
T cd08179 92 SPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAF 145 (375)
T ss_pred cHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCe
Confidence 5555554432 1100 00023469999996 777655533
No 70
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=71.39 E-value=24 Score=35.15 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
++++|+..+.... ...++++...|.+.+. +. +..+.+..- + ....+.++.+ + ..+.|.||++|| |
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~-~---~~v~~~~~~~----~-~~~~D~IIaiGG-G 89 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLP-R---SELCDAASAA----A-RAGPDVIIGLGG-G 89 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcC-H---HHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6788888655432 2356777777765432 21 111111110 1 1122222221 1 246689999998 6
Q ss_pred HHHHHHHHHhhccc------------CCCCCCCcEEEeec--CCccchhhh
Q 019227 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 159 Tv~eVln~L~~~~~------------~~~~~~~plgIIP~--GTgNDfArs 195 (344)
++..+.-.+.-... ....+.+|+..||. |||-..++.
T Consensus 90 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 90 SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 77776655532110 01123679999995 777655543
No 71
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=69.85 E-value=33 Score=33.75 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++|+..+.... ....+++...|.....+.+..+++..- .....+.++.+. ....+.|.||++|| |++
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~pt----~~~v~~~~~~~~---~~~~~~D~IIaiGG-GSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNPD----VAQLDGLYARLW---GDEGACDLVIALGG-GSV 92 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCcC----HHHHHHHHHHHH---hcCCCCCEEEEeCC-ccH
Confidence 7888888664321 235667777775432222222222221 123333333221 11123789999998 666
Q ss_pred HHHHHHHhhc---cc-----------C--CCCCCCcEEEeec--CCccchhhh
Q 019227 161 GWVLGSVGEL---NK-----------Q--GREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 161 ~eVln~L~~~---~~-----------~--~~~~~~plgIIP~--GTgNDfArs 195 (344)
..+.-.+.-. .+ . .....+|+..||. |||-...+.
T Consensus 93 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 93 IDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 6666544221 00 0 0124579999996 887665544
No 72
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=69.74 E-value=27 Score=34.61 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+..-. ...++++...|.+.++ +.+ ..+.+.. ......+.++.+. ..+.|.||++||
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNP----TITVVKAGVAAFK-----ASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 46888887654322 1256677777765432 221 1122211 1123333333221 235689999998
Q ss_pred hHHHHHHHHHh---hcc---------cC--CCCCCCcEEEeec--CCccchhhhh
Q 019227 158 GTVGWVLGSVG---ELN---------KQ--GREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 158 GTv~eVln~L~---~~~---------~~--~~~~~~plgIIP~--GTgNDfArsL 196 (344)
|++..+.-.+. ..+ .. .....+|+..||. |||-...+..
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 56666654332 110 00 0124579999996 7776555443
No 73
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=69.29 E-value=19 Score=34.92 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~-~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++||..+..-. ..+++++...|.+. ....+....+.. .....++.++... ..+.|.||++|| |+
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG-Gs 89 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSSIEVEIFSDVVPDP----PIEVVAKGIKKFL-----DFKPDIVIALGG-GS 89 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhcCcEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEECC-ch
Confidence 6788888764322 12556666666542 111111122211 1122334433221 235789999998 56
Q ss_pred HHHHHHHHhhccc-CCCCCCCcEEEeec--CCccch
Q 019227 160 VGWVLGSVGELNK-QGREPVPPVAIIPL--GTGNDL 192 (344)
Q Consensus 160 v~eVln~L~~~~~-~~~~~~~plgIIP~--GTgNDf 192 (344)
+..+.-.+.-... ....+.+|+..||. |||--.
T Consensus 90 ~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 90 AIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhh
Confidence 6666654321100 01124579999995 777444
No 74
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=68.95 E-value=15 Score=36.02 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++||..+..-. ...+++...|...+. +.+......+. ........++++.+.+ ....+.+.||++|| |
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~-~~~~~~v~~~~~~~~~--~~~~r~d~IIaiGG-G 95 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEA-SKSLETLEKLYDALLE--AGLDRKSLIIALGG-G 95 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCC-cCCHHHHHHHHHHHHH--cCCCCCCeEEEECC-h
Confidence 47888988766543 356777777765431 22212111110 1122344444443211 11234578888887 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
++..+...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 8888876664321 14678999995
No 75
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=68.37 E-value=32 Score=34.17 Aligned_cols=104 Identities=13% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+..-. ...++++...|.+.+. +.+ ..+.+..- .....+.++.+. ..+.|.||++||
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 96 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPT----IEVVKEGVEVFK-----ASGADYLIAIGG- 96 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788887653322 1256677777765432 221 11222111 122333333221 235689999998
Q ss_pred hHHHHHHHHHh---hccc-----------CCCCCCCcEEEeec--CCccchhhhh
Q 019227 158 GTVGWVLGSVG---ELNK-----------QGREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 158 GTv~eVln~L~---~~~~-----------~~~~~~~plgIIP~--GTgNDfArsL 196 (344)
|++..+.-.+. ..++ ......+|+..||. |||--..+..
T Consensus 97 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~a 151 (382)
T PRK10624 97 GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINY 151 (382)
T ss_pred hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhccee
Confidence 56666664332 1100 00124579999995 7876655543
No 76
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=67.86 E-value=38 Score=33.77 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~-~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+.. .....++++...|.+.++ + .+..+.|..- ....++.++.+. ..+.|.||++||=
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~----~~~v~~~~~~~~-----~~~~D~IiaiGGG 98 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPT----TENVAAGLKLLK-----ENNCDSVISLGGG 98 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----HcCCCEEEEeCCc
Confidence 367777764321 112356678888876543 1 2222222211 122333333221 2467899999984
Q ss_pred hHHHHHHHHHh---hccc---------CCCCCCCcEEEeec--CCccchhhhhCC
Q 019227 158 GTVGWVLGSVG---ELNK---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (344)
Q Consensus 158 GTv~eVln~L~---~~~~---------~~~~~~~plgIIP~--GTgNDfArsLg~ 198 (344)
++-.+.-.+. .... ......+|+..||. |||-...+.--+
T Consensus 99 -S~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 99 -SPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred -hHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 4444443332 1100 01124679999996 888766655443
No 77
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=67.66 E-value=32 Score=34.49 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~-~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+.. ....+++++...|.+.++ +.+. .+.+..- .....+.++.+. ..+.|.||++||=
T Consensus 49 ~~~~lvv~~~~~---~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~----~~~v~~~~~~~r-----~~~~D~IiavGGG 116 (395)
T PRK15454 49 LKHLFVMADSFL---HQAGMTAGLTRSLAVKGIAMTLWPCPVGEPC----ITDVCAAVAQLR-----ESGCDGVIAFGGG 116 (395)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEECCCCCCcC----HHHHHHHHHHHH-----hcCcCEEEEeCCh
Confidence 356666543221 112356778888876553 2221 1222211 122333333221 2467999999994
Q ss_pred hHHHHHHHHH---hhccc---------CCCCCCCcEEEeec--CCccchhhhhCC
Q 019227 158 GTVGWVLGSV---GELNK---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (344)
Q Consensus 158 GTv~eVln~L---~~~~~---------~~~~~~~plgIIP~--GTgNDfArsLg~ 198 (344)
++-.+.-.+ ...++ ....+.+|+..||. |||-...+.--+
T Consensus 117 -S~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi 170 (395)
T PRK15454 117 -SVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVI 170 (395)
T ss_pred -HHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEE
Confidence 444444332 11110 01123579999995 887766655433
No 78
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=67.64 E-value=44 Score=32.94 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++||.-+..- ....+++...|...+. +.+....+... ....+++++.+. ..+.|.||++|| |+
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~----~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 95 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECS----DNEIDRLVAIAE-----ENGCDVVIGIGG-GK 95 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCC----HHHHHHHHHHHH-----hcCCCEEEEecC-hH
Confidence 678888755432 2366788888876542 22222222211 123444444321 135689999998 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec--CCccchhh
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~--GTgNDfAr 194 (344)
+..+.-.+.-. ..+|+..||. |||-....
T Consensus 96 v~D~aK~iA~~------~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 96 TLDTAKAVADY------LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccC
Confidence 88887776542 3579999996 55554443
No 79
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=67.44 E-value=34 Score=33.17 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
+.|.||++|| |++..+.-.+... ..+|+..||.
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~------~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFL------RGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhh------cCCCEEEecC
Confidence 5688998888 7888888777542 4689999996
No 80
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.51 E-value=18 Score=35.65 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE---eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL---SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l---~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~G 155 (344)
.++++||..+... ....+++.+.|...+. +.+ ....+. .......++++.+.+ ....+.|.||++|
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~----~~~~~v~~~~~~~~~--~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQY----KSLETLEKIYDALLE--AGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCC----CCHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 4688888876552 2366778888865432 221 111111 112334444433211 1123458888888
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeec--CCccc
Q 019227 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (344)
Q Consensus 156 GDGTv~eVln~L~~~~~~~~~~~~plgIIP~--GTgND 191 (344)
| |++..++..+.... ...+|+..||. ++.+|
T Consensus 101 G-Gsv~D~aK~iA~~~----~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 101 G-GVIGDLAGFAAATY----MRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEcCchhhhccc
Confidence 7 78888887665321 24679999997 34444
No 81
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=65.57 E-value=29 Score=33.78 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++||..+.. .+...+++.+.|.......+....+.. ......++++... ..+.|.||++|| |++
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHT----PVEVTEAAVAAAR-----EAGADGIVAIGG-GST 89 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 57777764322 223667788888754321111122211 1123334443221 135689999988 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeec-CCcc
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGN 190 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~-GTgN 190 (344)
..+.-.+.-. ..+|+..||. -||.
T Consensus 90 iD~aK~ia~~------~~~p~i~IPTtatgs 114 (337)
T cd08177 90 IDLAKAIALR------TGLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHH------hcCCEEEEcCCchhh
Confidence 8888776542 2578999994 2444
No 82
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=65.18 E-value=47 Score=33.28 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEeeecccceeecch-hHHHHHHhccchhhhccCCCcEEEE
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVV 153 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~----~~l~~~~~~~~~t~~~-g~a~~la~~~~~~~~~~~~~~~IVv 153 (344)
..++++||..+.--.- ...+.+++...|.+.+. |+....-+.....+.. ....++.+.+.+ ...++.+.||+
T Consensus 41 ~~~r~liVtD~~v~~~-~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~--~~~dr~d~IIa 117 (389)
T PRK06203 41 KPKKVLVVIDSGVLRA-HPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR--HGIDRHSYVLA 117 (389)
T ss_pred CCCeEEEEECchHHHh-hhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH--cCCCCCceEEE
Confidence 3478888887654431 12356778888865432 2211110100011111 223333332211 12345568888
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 154 ~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
+|| |++..+...+.... ...+|+-.||.
T Consensus 118 iGG-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 118 IGG-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred eCC-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 887 78888876664321 13578999995
No 83
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=64.79 E-value=18 Score=35.06 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.+|++|||||+.-+. .|.+ ...+|+--||.=--||+. .++|+
T Consensus 91 ~Id~Li~IGGdgs~~~a~-~L~e------~~~i~vigiPkTIDNDl~~td~s~Gf 138 (301)
T TIGR02482 91 GIEGLVVIGGDGSYTGAQ-KLYE------EGGIPVIGLPGTIDNDIPGTDYTIGF 138 (301)
T ss_pred CCCEEEEeCCchHHHHHH-HHHH------hhCCCEEeecccccCCCcCcccCcCh
Confidence 558999999999987664 3333 136788889999999998 35554
No 84
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=63.79 E-value=35 Score=34.04 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++||.-+..- ....++++...|...+. +. +..+.+..- .....+.++.+. ..+.|.||++||
T Consensus 21 ~~k~liVtd~~~~---~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 87 (398)
T cd08178 21 KKRAFIVTDRFMV---KLGYVDKVIDVLKRRGVETEVFSDVEPDPS----LETVRKGLELMN-----SFKPDTIIALGG- 87 (398)
T ss_pred CCeEEEEcChhHH---hCccHHHHHHHHHHCCCeEEEecCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 3677877643321 11256777788876532 21 111222211 122334433221 235689999999
Q ss_pred hHHHHHHHHH
Q 019227 158 GTVGWVLGSV 167 (344)
Q Consensus 158 GTv~eVln~L 167 (344)
|++..+.-.+
T Consensus 88 GS~iD~AK~i 97 (398)
T cd08178 88 GSPMDAAKIM 97 (398)
T ss_pred ccHHHHHHHH
Confidence 5555555444
No 85
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=62.97 E-value=19 Score=37.10 Aligned_cols=51 Identities=33% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGWG 199 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~~ 199 (344)
+-+.++++|||||..-+..---...+ ....+++--||-==-||+. +++|+.
T Consensus 176 ~I~~L~vIGGdgT~~~A~~L~ee~~~--~g~~I~VIGIPKTIDNDI~~td~S~GFd 229 (459)
T PTZ00286 176 GINILFTLGGDGTHRGALAIYKELRR--RKLNISVVGIPKTIDNDIPIIDESFGFQ 229 (459)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCCCcccCcCch
Confidence 45799999999999866432211111 1346899999998999998 667763
No 86
>PRK06756 flavodoxin; Provisional
Probab=62.79 E-value=42 Score=28.23 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcC
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQ 111 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~ 111 (344)
+++++||+=. ..|+.+++.+.|.+.|...+
T Consensus 1 mmkv~IiY~S--~tGnTe~vA~~ia~~l~~~g 30 (148)
T PRK06756 1 MSKLVMIFAS--MSGNTEEMADHIAGVIRETE 30 (148)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHhhcC
Confidence 3578888844 55667788899988886543
No 87
>PRK15138 aldehyde reductase; Provisional
Probab=61.89 E-value=42 Score=33.49 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++||.-+.+=. ....++++...|....+..+..+.|..- ....++.++.+. ..+.|.||++|| |++
T Consensus 30 ~~~livt~~~~~~--~~g~~~~v~~~L~~~~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG-GS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVK--KTGVLDQVLDALKGMDVLEFGGIEPNPT----YETLMKAVKLVR-----EEKITFLLAVGG-GSV 97 (387)
T ss_pred CeEEEECCCchHH--hcCcHHHHHHHhcCCeEEEECCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-hHH
Confidence 6777775544321 1234566777775322212222222221 123344443321 246789999999 444
Q ss_pred HHHHHHHhh---cc------------cCCCCCCCcEEEeec--CCccchhhhh
Q 019227 161 GWVLGSVGE---LN------------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 161 ~eVln~L~~---~~------------~~~~~~~~plgIIP~--GTgNDfArsL 196 (344)
-.+.-.+.- .. .....+.+|+..||. |||-......
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 98 LDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 444433311 10 001123579999996 8887655543
No 88
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=61.82 E-value=29 Score=33.75 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
.++++||..+..-.. ..+++...|.+.+. +.+..... ..+-......++++.+. .+.|.||++|| |
T Consensus 24 ~~kvlivtd~~~~~~----~~~~i~~~L~~~~~~~~i~~~~~--~~~p~~~~v~~~~~~~~------~~~d~IIaiGG-G 90 (332)
T cd08549 24 NSKIMIVCGNNTYKV----AGKEIIERLESNNFTKEVLERDS--LLIPDEYELGEVLIKLD------KDTEFLLGIGS-G 90 (332)
T ss_pred CCcEEEEECCcHHHH----HHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhh------cCCCEEEEECC-c
Confidence 368888887665322 23667777765432 22211000 00001233445554331 26689999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
++..+.-.+.-. ..+|+-.||.
T Consensus 91 sv~D~aK~iA~~------~gip~I~VPT 112 (332)
T cd08549 91 TIIDLVKFVSFK------VGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHHHH------cCCCEEEeCC
Confidence 888888776532 3579999996
No 89
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=61.58 E-value=68 Score=32.02 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=53.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---Eeeecccceeecch-hHHHHHHhccchhhhccCCCcEEEEE
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~---l~~~~~~~~~t~~~-g~a~~la~~~~~~~~~~~~~~~IVv~ 154 (344)
.++++||.++.-.. ....+.+++...|.+.+. +. ....-+....++.. ....++.+.+.+ ...++.+.||+.
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~--~~~~r~~~IIal 106 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR--HGIDRHSYVIAI 106 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH--cCCCcCcEEEEE
Confidence 47889998876553 112356777777765431 22 11111111112221 223334333211 123455688888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 155 GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
|| |++..+...+.... ...+|+-.||.
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPT 133 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPT 133 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECC
Confidence 88 88998887765421 14588888985
No 90
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=61.47 E-value=27 Score=34.09 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++||..+..- +...+++.+.|.+.+. +........+. ........++++.+.+ ....+.+.||++|| |+
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~-~~~~~~v~~~~~~~~~--~~~~r~d~IIavGG-Gs 92 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEE-SKSLETVQRLYDQLLE--AGLDRSSTIIALGG-GV 92 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCC-CCCHHHHHHHHHHHHH--cCCCCCCEEEEEcC-hH
Confidence 788888865543 2356777777876432 22111111000 1112334444443211 01234588888887 77
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
+..+...+.... ...+|+..||.
T Consensus 93 v~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 93 VGDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHH----ccCCCEEEecC
Confidence 888776664321 14578999997
No 91
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=61.17 E-value=48 Score=33.36 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+..-. ...++++...|.+.++ +.+ ..+.+..- .....+.++.+. ..+.|.||++||
T Consensus 23 ~~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 89 (414)
T cd08190 23 ARRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEPT----DESFKDAIAFAK-----KGQFDAFVAVGG- 89 (414)
T ss_pred CCeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788887654321 1245677777765432 222 11222211 122333333221 235689999998
Q ss_pred hHHHHHHHHHh---hcc--------------c-CCCCCCCcEEEeec--CCccchhhh
Q 019227 158 GTVGWVLGSVG---ELN--------------K-QGREPVPPVAIIPL--GTGNDLSRS 195 (344)
Q Consensus 158 GTv~eVln~L~---~~~--------------~-~~~~~~~plgIIP~--GTgNDfArs 195 (344)
|++..+.-.+. ..+ . ......+|+..||. |||-...+.
T Consensus 90 GSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~ 147 (414)
T cd08190 90 GSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGV 147 (414)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccc
Confidence 44554433321 100 0 01113469999995 666654443
No 92
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=61.07 E-value=61 Score=32.08 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l-~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+..-. ...++++...|.+.+. +.+ ..+.+.. ......+.++.+. ..+.|.||++||
T Consensus 28 ~~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG- 94 (377)
T cd08188 28 AKKVLLVSDPGVIK---AGWVDRVIESLEEAGLEYVVFSDVSPNP----RDEEVMAGAELYL-----ENGCDVIIAVGG- 94 (377)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788876543211 1245677777765432 221 1122211 1122333333221 245789999998
Q ss_pred hHHHHHHHHH---hhccc---------CCCCCCCcEEEeec--CCccchhh
Q 019227 158 GTVGWVLGSV---GELNK---------QGREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 158 GTv~eVln~L---~~~~~---------~~~~~~~plgIIP~--GTgNDfAr 194 (344)
|++-.+.-.+ ...+. ....+.+|+..||. |||--.++
T Consensus 95 GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 95 GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 5666665332 21100 01123479999996 88755554
No 93
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=59.84 E-value=21 Score=34.99 Aligned_cols=44 Identities=32% Similarity=0.554 Sum_probs=33.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.+|++|||||+.-+ +.|.+ ..+++--||.==-||+. .++|+
T Consensus 94 ~Id~LivIGGdgS~~~a-~~L~~-------~gi~vigiPkTIDNDl~gtd~tiGf 140 (324)
T TIGR02483 94 GLDALIAIGGDGTLGIA-RRLAD-------KGLPVVGVPKTIDNDLEATDYTFGF 140 (324)
T ss_pred CCCEEEEECCchHHHHH-HHHHh-------cCCCEEeeccccCCCCcCCccCcCH
Confidence 55899999999999755 34543 24888889998899997 45565
No 94
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=59.39 E-value=46 Score=32.53 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
++++|+..+.+-. ...+++...|....+ +++....+.. + .....++++.+. ..+.|.||++|| |+
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p--~--~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGEC--S--TEEVVKALCGAE-----EQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCC--C--HHHHHHHHHHHH-----hcCCCEEEEecC-cH
Confidence 5777777655432 356777777876442 2222211110 1 123344443321 135689999988 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeec--CCccchh
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~--GTgNDfA 193 (344)
+..+.-.+... ..+|+..||. |||-..+
T Consensus 89 ~~D~aK~ia~~------~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 89 TLDTAKAVADR------LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCcccc
Confidence 88888777542 3579999996 6664443
No 95
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=58.14 E-value=31 Score=33.88 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 82 ~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~-~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
+++||..| +-.. ..+.+++...|++..+ + .+....+.. .....+++++.+. ..+.|.||++||= +
T Consensus 23 r~lvVt~~-~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGGG-S 89 (366)
T PF00465_consen 23 RVLVVTDP-SLSK--SGLVDRVLDALEEAGIEVQVFDGVGPNP----TLEDVDEAAEQAR-----KFGADCIIAIGGG-S 89 (366)
T ss_dssp EEEEEEEH-HHHH--HTHHHHHHHHHHHTTCEEEEEEEESSS-----BHHHHHHHHHHHH-----HTTSSEEEEEESH-H
T ss_pred CEEEEECc-hHHh--CccHHHHHHHHhhCceEEEEEecCCCCC----cHHHHHHHHHHHH-----hcCCCEEEEcCCC-C
Confidence 89999988 4322 2367888888865542 2 222122221 1133444444331 2367899999994 4
Q ss_pred HHHHHHHHhhcccC-------------CCCCCCcEEEeec--CCccchhhhhCC
Q 019227 160 VGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (344)
Q Consensus 160 v~eVln~L~~~~~~-------------~~~~~~plgIIP~--GTgNDfArsLg~ 198 (344)
+-.++-.+.-.... ...+.+|+..||. |||-.+.+...+
T Consensus 90 ~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi 143 (366)
T PF00465_consen 90 VMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVI 143 (366)
T ss_dssp HHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEE
T ss_pred cCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccc
Confidence 44444443221110 0123479999996 777666655443
No 96
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=57.72 E-value=23 Score=34.83 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=31.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc-ccCCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~-~~~~~~~~~plgIIP~GTgNDfA 193 (344)
+-+.++++|||||+.-+.. |.+. .+ ....+++--||-=--||+.
T Consensus 92 ~I~~Lv~IGGd~s~~~a~~-L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 92 GIDALVVIGGDGSYTGADL-LTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred CCCEEEEeCCHHHHHHHHH-HHHHHHh--cCCCccEEEeeecccCCCc
Confidence 5579999999999976642 2221 11 1346899999977789987
No 97
>PLN02834 3-dehydroquinate synthase
Probab=57.24 E-value=85 Score=31.98 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~----~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~G 155 (344)
.++++||.++... +...+++...|...+. |++.....+. +.....+.++++.+.+ ...+..+.||++|
T Consensus 100 g~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~--~ksl~~v~~~~~~l~~--~~~dr~~~VIAiG 171 (433)
T PLN02834 100 GKRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEK--YKDMETLMKVFDKALE--SRLDRRCTFVALG 171 (433)
T ss_pred CCEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcC--CCCHHHHHHHHHHHHh--cCCCcCcEEEEEC
Confidence 3788888876543 2356678888865432 2221111111 1122334444333211 1123456788887
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeecC
Q 019227 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (344)
Q Consensus 156 GDGTv~eVln~L~~~~~~~~~~~~plgIIP~G 187 (344)
| |++..+...+.... ...+|+-.||.-
T Consensus 172 G-Gsv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 172 G-GVIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred C-hHHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 7 78888886553221 135789999983
No 98
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=56.49 E-value=5.7 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=28.8
Q ss_pred heehhhhcCCce-eEeeccccccccchhhhhHHh
Q 019227 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (344)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (344)
+++..+..|..| |||..|..|+-.++.+||...
T Consensus 65 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 65 FIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp HHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred hhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 445667788889 999999999999999999885
No 99
>PLN02564 6-phosphofructokinase
Probab=56.34 E-value=19 Score=37.32 Aligned_cols=50 Identities=32% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.++++|||||+.-+..--....+ ....+++--||-==-||+. +++|+
T Consensus 176 ~Id~LivIGGDGS~~gA~~L~e~~~~--~g~~i~VIGIPKTIDNDI~~tD~T~GF 228 (484)
T PLN02564 176 GINQVYIIGGDGTQKGASVIYEEIRR--RGLKVAVAGIPKTIDNDIPVIDKSFGF 228 (484)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEEecccccCCCcCcccCCCH
Confidence 45799999999999766432111111 1244668888988899998 45565
No 100
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=55.74 E-value=26 Score=35.92 Aligned_cols=50 Identities=32% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.++++|||||+.-+.. |.+.-+ .....+++--||-==-||+. +++|+
T Consensus 172 ~I~~L~vIGGdgT~~gA~~-l~ee~~-~~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 172 NINILFVIGGDGTLRGASA-IAEEIE-RRGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred CCCEEEEeCCchHHHHHHH-HHHHHH-HhCCCceEEEeccccCCCCcCcccCCCH
Confidence 4578999999999976643 222100 01345888899988899997 55665
No 101
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=55.62 E-value=26 Score=34.15 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
.+-+.++++|||||+.-+. .|.+ ..+|+--||-==-||+. .++|+
T Consensus 91 ~~Id~Li~IGGdgs~~~a~-~L~e-------~~i~vigiPkTIDNDi~gtd~t~Gf 138 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAM-RLTE-------HGFPCVGLPGTIDNDIPGTDYTIGF 138 (317)
T ss_pred cCCCEEEEECCchHHHHHH-HHHH-------cCCCEEEecccccCCCCCCccCCCH
Confidence 3558999999999998764 3443 25899999999999998 34554
No 102
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=55.20 E-value=67 Score=31.54 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+.+-. ...++++...|.+.+. +. +....+.. ......++++.+. ..+.|.||++||
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNP----TLSNVDAAVAAYR-----EEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36888888766543 1355667777765432 22 11111111 1233444444321 235689999988
Q ss_pred hHHHHHHHHHhhcc---c---------CCCCCCCcEEEeec--CCccchhh
Q 019227 158 GTVGWVLGSVGELN---K---------QGREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 158 GTv~eVln~L~~~~---~---------~~~~~~~plgIIP~--GTgNDfAr 194 (344)
|++..+.-.+.... . ......+|+..||. |||--...
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~ 140 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTP 140 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCC
Confidence 56666655442211 0 00123679999996 67644333
No 103
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=54.72 E-value=2.6 Score=36.72 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=11.8
Q ss_pred EEEEcCchHHHHHHH
Q 019227 151 IVVAGGDGTVGWVLG 165 (344)
Q Consensus 151 IVv~GGDGTv~eVln 165 (344)
-=-.|||||+||+-+
T Consensus 128 YRgdGGDGT~hW~Yd 142 (180)
T PLN00180 128 YRGDGGDGTGHWVYE 142 (180)
T ss_pred hcccCCCCceeeEee
Confidence 345699999999964
No 104
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=53.68 E-value=53 Score=30.95 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGT 159 (344)
.++++++.-+.. .+..-++++..|+..+ |++...... ..+-......++.+.+. ..+.+.||.+|| ||
T Consensus 19 ~~~~lvv~d~~t----~~~~g~~v~~~l~~~g-~~v~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~d~ii~vGg-G~ 86 (250)
T PF13685_consen 19 LKKVLVVTDENT----YKAAGEKVEESLKSAG-IEVAVIEEF-VGDADEDEVEKLVEALR-----PKDADLIIGVGG-GT 86 (250)
T ss_dssp -SEEEEEEETTH----HHHHHHHHHHHHHTTT--EEEEEE-E-E---BHHHHHHHHTTS-------TT--EEEEEES-HH
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHHHHHcC-CeEEEEecC-CCCCCHHHHHHHHHHhc-----ccCCCEEEEeCC-cH
Confidence 368888876652 2334467777777543 444322100 00111233445544321 135678888887 99
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeecCCccc
Q 019227 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (344)
Q Consensus 160 v~eVln~L~~~~~~~~~~~~plgIIP~GTgND 191 (344)
++.+.--.... ...|+-.+|.=-.||
T Consensus 87 i~D~~K~~A~~------~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 87 IIDIAKYAAFE------LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHHHHH------HT--EEEEES--SSG
T ss_pred HHHHHHHHHHh------cCCCEEEeccccccc
Confidence 99999877653 468999999755544
No 105
>PRK14071 6-phosphofructokinase; Provisional
Probab=52.66 E-value=34 Score=34.01 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.++++|||||+.- +..|.+ ...+++--||-==-||+. .++|+
T Consensus 107 ~Id~Li~IGGdgS~~~-a~~L~~------~~~i~vIgiPkTIDNDl~~td~t~Gf 154 (360)
T PRK14071 107 GLDALIGIGGDGSLAI-LRRLAQ------QGGINLVGIPKTIDNDVGATEVSIGF 154 (360)
T ss_pred CCCEEEEECChhHHHH-HHHHHH------hcCCcEEEecccccCCCcCcccCcCh
Confidence 5589999999999863 344543 126889999988899997 45665
No 106
>PRK03202 6-phosphofructokinase; Provisional
Probab=52.21 E-value=31 Score=33.69 Aligned_cols=44 Identities=30% Similarity=0.365 Sum_probs=33.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.+|++|||||+.-+. .|.+ ..+|+--||-==-||+. .++|+
T Consensus 93 ~Id~Li~IGGd~s~~~a~-~L~e-------~~i~vigiPkTIDNDl~gtd~s~Gf 139 (320)
T PRK03202 93 GIDALVVIGGDGSYMGAK-RLTE-------HGIPVIGLPGTIDNDIAGTDYTIGF 139 (320)
T ss_pred CCCEEEEeCChHHHHHHH-HHHh-------cCCcEEEecccccCCCCCCccCcCH
Confidence 458999999999998764 3443 36888889998899998 34554
No 107
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=52.00 E-value=1.2e+02 Score=29.87 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~--~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++||.-+.+- ..+.+...|.+.+. +.+....+..- .....++++.+. ..+.|.||++||
T Consensus 23 ~~~~livtd~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~p~----~~~v~~~~~~~~-----~~~~D~IIavGG- 86 (367)
T cd08182 23 GKRVLLVTGPRSA------IASGLTDILKPLGTLVVVFDDVQPNPD----LEDLAAGIRLLR-----EFGPDAVLAVGG- 86 (367)
T ss_pred CCeEEEEeCchHH------HHHHHHHHHHHcCCeEEEEcCcCCCcC----HHHHHHHHHHHH-----hcCcCEEEEeCC-
Confidence 3678877655443 33455666655432 11212222211 122344443321 135689999988
Q ss_pred hHHHHHHHHHhhcc----------------cCCCCCCCcEEEeec--CCccch
Q 019227 158 GTVGWVLGSVGELN----------------KQGREPVPPVAIIPL--GTGNDL 192 (344)
Q Consensus 158 GTv~eVln~L~~~~----------------~~~~~~~~plgIIP~--GTgNDf 192 (344)
|++..+.-.+...- .......+|+..||. |||--.
T Consensus 87 Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 87 GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 66666665543210 000124679999996 666544
No 108
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=51.79 E-value=1.3e+02 Score=29.28 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEee-ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~-~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++||.-+.+- +...+++...|...++ +.+.. ..+... .......++++.+. ++.|.||++||
T Consensus 23 ~~~~livtd~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~~~~--pt~~~v~~~~~~~~------~~~d~IIaIGG- 89 (348)
T cd08175 23 YKKALIVADENTY----AAAGKKVEALLKRAGVVVLLIVLPAGDLI--ADEKAVGRVLKELE------RDTDLIIAVGS- 89 (348)
T ss_pred CCcEEEEECCcHH----HHHHHHHHHHHHHCCCeeEEeecCCCccc--CCHHHHHHHHHHhh------ccCCEEEEECC-
Confidence 3677888755332 2234677777766543 22111 111100 11233444544321 16789999998
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 158 GTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
|++..+.-.+.-. ..+|+-.||.
T Consensus 90 Gs~~D~aK~vA~~------~~~p~i~IPT 112 (348)
T cd08175 90 GTINDITKYVSYK------TGIPYISVPT 112 (348)
T ss_pred cHHHHHHHHHHHh------cCCCEEEecC
Confidence 7788888777542 4579999995
No 109
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=51.03 E-value=1.1e+02 Score=29.90 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++||..+.+-. ...+++...|.....+.+. ..+. .......++++.+. ..+.+.||++|| |++
T Consensus 35 ~~~livtd~~~~~----~~~~~l~~~l~~~~~~~~~-~~~~----~t~~~v~~~~~~~~-----~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKK----IAGDRVEENLEDAGDVEVV-IVDE----ATMEEVEKVEEKAK-----DVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHH----HHHHHHHHHHHhcCCeeEE-eCCC----CCHHHHHHHHHHhh-----ccCCCEEEEeCC-chH
Confidence 6888888877642 2345666666543211111 1221 11233445554431 124688888888 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeecC
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPLG 187 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~G 187 (344)
..+.-.+.-. ..+|+-.||.=
T Consensus 100 ~D~ak~vA~~------rgip~I~IPTT 120 (350)
T PRK00843 100 IDVAKLAAYR------LGIPFISVPTA 120 (350)
T ss_pred HHHHHHHHHh------cCCCEEEeCCC
Confidence 8888776532 45789999953
No 110
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.89 E-value=1.1e+02 Score=26.96 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHHHHHHHHHhhcccCC
Q 019227 97 PELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTVGWVLGSVGELNKQG 174 (344)
Q Consensus 97 ~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~-~~IVv~GGDGTv~eVln~L~~~~~~~ 174 (344)
....++....|+..++ |++.+...+ ..+....++++++.+ +.. -.|.++|+.+-+--++.++.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaH----Rtp~~~~~~~~~a~~-----~g~~viIa~AG~aa~Lpgvva~~t------ 75 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAH----RTPELMLEYAKEAEE-----RGIKVIIAGAGGAAHLPGMVAALT------ 75 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcc----cCHHHHHHHHHHHHH-----CCCeEEEEeCCccchhHHHHHhcc------
Confidence 3466777778877765 888776543 134567777765421 222 35667899999998888765
Q ss_pred CCCCCcEEEeecCCc
Q 019227 175 REPVPPVAIIPLGTG 189 (344)
Q Consensus 175 ~~~~~plgIIP~GTg 189 (344)
..|+--+|.-++
T Consensus 76 ---~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 ---PLPVIGVPVPSK 87 (156)
T ss_pred ---CCCEEEecCCcc
Confidence 346555666543
No 111
>PRK10586 putative oxidoreductase; Provisional
Probab=50.29 E-value=1.2e+02 Score=30.11 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++++||.-+.+ .+.....+...|.+.. +++...... . ...+.+++++.. ..+.|.||.+|| |++
T Consensus 35 ~~~lvv~g~~~----~~~~~~~~~~~l~~~~-~~~~~~~g~--~--~~~~v~~l~~~~------~~~~d~iiavGG-Gs~ 98 (362)
T PRK10586 35 SRAVWIYGERA----IAAAQPYLPPAFELPG-AKHILFRGH--C--SESDVAQLAAAS------GDDRQVVIGVGG-GAL 98 (362)
T ss_pred CeEEEEEChHH----HHHHHHHHHHHHHHcC-CeEEEeCCC--C--CHHHHHHHHHHh------ccCCCEEEEecC-cHH
Confidence 56777754432 2233355666676543 222211100 0 123345554432 134588888887 677
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeecCCc
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~GTg 189 (344)
..+.-.+... ..+|+..||.=-+
T Consensus 99 iD~aK~~a~~------~~~p~i~vPT~a~ 121 (362)
T PRK10586 99 LDTAKALARR------LGLPFVAIPTIAA 121 (362)
T ss_pred HHHHHHHHhh------cCCCEEEEeCCcc
Confidence 7777766542 4679999997333
No 112
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=50.24 E-value=1.2e+02 Score=29.94 Aligned_cols=49 Identities=31% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCcEEEEEcCchHHHHHHHHH---hhccc---------CCCCCCCcEEEeec--CCccchhhhh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSV---GELNK---------QGREPVPPVAIIPL--GTGNDLSRSF 196 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L---~~~~~---------~~~~~~~plgIIP~--GTgNDfArsL 196 (344)
+.|.||++|| |++-.+.-.+ ...+. ....+.+|+..||. |||--..+.-
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 5789999998 4555554443 21110 00123468999995 8877665444
No 113
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=48.85 E-value=8.3 Score=31.98 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=27.8
Q ss_pred heehhhhcCCce-eEeeccccccccchhhhhHHh
Q 019227 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (344)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (344)
.++..+..|..+ |||..|..|+-.++..||...
T Consensus 70 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 70 FIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 345667788888 999999999999999998763
No 114
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=48.40 E-value=86 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
.+.+.||++|| |++..++..+.... ...+|+-.+|.
T Consensus 268 ~r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 268 TRSDAIVGLGG-GAATDLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred CCCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEEEeCC
Confidence 35788888888 88888887775421 14678888887
No 115
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=47.98 E-value=63 Score=31.91 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcC
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGG 156 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~-~~IVv~GG 156 (344)
..++++||..+..-. ...+++.+.|...+. +........+ ........+++++.+.+ ...... +.||++||
T Consensus 25 ~~~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e-~~~s~~~v~~~~~~l~~--~~~~r~~d~IVaiGG 97 (354)
T cd08199 25 GSGRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGE-AAKTMDTVLKIVDALDA--FGISRRREPVLAIGG 97 (354)
T ss_pred CCCeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCCCEEEEECC
Confidence 357788888765432 244667777765432 2211111111 11122344454443211 112234 78888877
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 157 DGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
|++..++..+.... ...+|+-.||.
T Consensus 98 -G~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 78888877765321 13578888887
No 116
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=47.93 E-value=36 Score=34.42 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhh-cccCCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~-~~~~~~~~~~plgIIP~GTgNDfA 193 (344)
+-+.++++|||||..-+. .|.+ ..+ ....+|+--||-==-||+.
T Consensus 112 ~Id~Li~IGGdgS~~~a~-~L~~~~~~--~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 112 GVDILHTIGGDDTNTTAA-DLAAYLAE--NGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred CCCEEEEECChhHHHHHH-HHHHHHHH--hCCCceEEEeeeeeeCCCC
Confidence 557999999999987664 3322 100 1236899999998899996
No 117
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=47.03 E-value=8.7 Score=34.06 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=29.7
Q ss_pred hheehhhhcCCce-eEeeccccccccchhhhhHHh
Q 019227 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (344)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (344)
..++...+-|..| |||-.|-+|+-.++.+||...
T Consensus 96 ~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 96 DFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 4557788888888 999999999999999999885
No 118
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=45.98 E-value=1.6e+02 Score=29.36 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEE--eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEE
Q 019227 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDL--SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (344)
Q Consensus 77 ~~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l--~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~ 154 (344)
.....+++++.|+.=. +-..+++...|..... ++ .+..+.| .++......++-+.+. .....+.+.||+.
T Consensus 30 ~~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g~-~v~~~~lp~GE-~~Ksl~~~~~i~~~ll--~~~~~R~s~iial 101 (360)
T COG0337 30 LLAGRKVAIVTDETVA----PLYLEKLLATLEAAGV-EVDSIVLPDGE-EYKSLETLEKIYDALL--EAGLDRKSTLIAL 101 (360)
T ss_pred hccCCeEEEEECchhH----HHHHHHHHHHHHhcCC-eeeEEEeCCCc-ccccHHHHHHHHHHHH--HcCCCCCcEEEEE
Confidence 3444589999998643 2346677777776543 22 2222222 2233344444443321 1234567788888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 155 GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
|| |+|..++.-...... ..+++--||.
T Consensus 102 GG-GvigDlaGF~Aaty~----RGv~fiqiPT 128 (360)
T COG0337 102 GG-GVIGDLAGFAAATYM----RGVRFIQIPT 128 (360)
T ss_pred CC-hHHHHHHHHHHHHHH----cCCCeEeccc
Confidence 88 888887755443221 3455555553
No 119
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=45.42 E-value=82 Score=34.59 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA 193 (344)
+-+.++++|||||..-+. .|.+.........+|+-.||.==-||+.
T Consensus 478 ~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 478 GIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred CCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 458999999999998664 3433111112356899999999999997
No 120
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=45.24 E-value=1.5e+02 Score=29.30 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~-l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGD 157 (344)
.++++|+.-+.--. ...++++...|.+.+. +. +....+.. ......+.++.+. ..+.|.||++||
T Consensus 26 ~~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGILK---AGLIDPLLASLEAAGIEVTVFDDVEADP----PEAVVEAAVEAAR-----AAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36777776543111 1245677777765432 22 11122211 1123444444321 236689999998
Q ss_pred hHHHHHHHHHhhccc------------CCCCCCCcEEEeec--CCccchhh
Q 019227 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSR 194 (344)
Q Consensus 158 GTv~eVln~L~~~~~------------~~~~~~~plgIIP~--GTgNDfAr 194 (344)
|++..+.-.+.-... ......+|+-.||. |||-....
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 677776655432100 00123579999995 66654443
No 121
>PRK14072 6-phosphofructokinase; Provisional
Probab=43.50 E-value=41 Score=34.10 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.+|++|||||+.-+. .|.+.-+ ....++++--||-==-||+. .++|+
T Consensus 103 ~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPkTIDNDl~gtD~t~GF 155 (416)
T PRK14072 103 DIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPKTIDNDLPGTDHCPGF 155 (416)
T ss_pred CCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeeecccCCCCCCCCCCCh
Confidence 457999999999997664 2332100 01245889999987799998 44554
No 122
>PRK09267 flavodoxin FldA; Validated
Probab=42.37 E-value=1.8e+02 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhh
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGK 109 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~ 109 (344)
++++||+-. ..|+.+++.+.|.+.|..
T Consensus 2 mki~IiY~S--~tGnT~~vA~~Ia~~l~~ 28 (169)
T PRK09267 2 AKIGIFFGS--DTGNTEDIAKMIQKKLGK 28 (169)
T ss_pred CeEEEEEEC--CCChHHHHHHHHHHHhCC
Confidence 578899954 445667888888888854
No 123
>PRK00536 speE spermidine synthase; Provisional
Probab=40.59 E-value=20 Score=34.00 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=14.1
Q ss_pred CCcEEEEEcCch-HHHHHH
Q 019227 147 QKMRIVVAGGDG-TVGWVL 164 (344)
Q Consensus 147 ~~~~IVv~GGDG-Tv~eVl 164 (344)
...++|+.|||| |+.||+
T Consensus 73 pk~VLIiGGGDGg~~REvL 91 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLF 91 (262)
T ss_pred CCeEEEEcCCchHHHHHHH
Confidence 446788889996 888886
No 124
>PLN02884 6-phosphofructokinase
Probab=40.09 E-value=48 Score=33.62 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.++++|||||+.-+.. |.+.-. .....+++--||-==-||+. .++|+
T Consensus 143 ~Id~LivIGGdgS~~~a~~-L~~~~~-~~g~~i~vIGIPkTIDNDi~~tD~TiGF 195 (411)
T PLN02884 143 GINMLFVLGGNGTHAGANA-IHNECR-KRKMKVSVVGVPKTIDNDILLMDKTFGF 195 (411)
T ss_pred CCCEEEEECCchHHHHHHH-HHHHHH-HcCCCceEEeccccccCCCcCcccCCCH
Confidence 5579999999999976542 222100 01245889999998899997 45554
No 125
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=39.30 E-value=79 Score=31.32 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=48.5
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC-
Q 019227 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG- 156 (344)
Q Consensus 78 ~~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GG- 156 (344)
+..+++++++---|=++. .+++++...|...+++++.-++|.+.++. ...+.+++++ ++-+.|+++||
T Consensus 27 ~~~~kVLi~YGGGSIKrn--GvydqV~~~Lkg~~~~E~~GVEPNP~~~T-v~kaV~i~ke--------e~idflLAVGGG 95 (384)
T COG1979 27 PKDAKVLIVYGGGSIKKN--GVYDQVVEALKGIEVIEFGGVEPNPRLET-LMKAVEICKE--------ENIDFLLAVGGG 95 (384)
T ss_pred cccCeEEEEecCcccccc--chHHHHHHHhcCceEEEecCCCCCchHHH-HHHHHHHHHH--------cCceEEEEecCc
Confidence 444899999854443333 37888888888666778877777654322 2334455542 45688999988
Q ss_pred ---chHHHHHH
Q 019227 157 ---DGTVGWVL 164 (344)
Q Consensus 157 ---DGTv~eVl 164 (344)
|||=--++
T Consensus 96 SViD~tK~IAa 106 (384)
T COG1979 96 SVIDGTKFIAA 106 (384)
T ss_pred chhhhHHHHHh
Confidence 56544333
No 126
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=37.73 E-value=1.9e+02 Score=28.41 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
+++++|..+.-.. -..+.+.+.|.....+.+....+. .....+.++.+.+.+ ...++.+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~~----l~~~~l~~~L~~~~~~~~~~~e~~----k~l~~v~~~~~~~~~--~~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVAE----LYRDRLDLPLDAAPVIAIDATEEN----KSLEAVSSVIESLRQ--NGARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHHH----HHHHHHHHHhcCCeEEEeCCCCCC----CCHHHHHHHHHHHHH--cCCCCCcEEEEECC-hHH
Confidence 6788888775432 255667766653222222212221 122334444433211 11234578888877 777
Q ss_pred HHHHHHHh
Q 019227 161 GWVLGSVG 168 (344)
Q Consensus 161 ~eVln~L~ 168 (344)
..++..+.
T Consensus 89 ~D~ak~vA 96 (346)
T cd08196 89 QDVTTFVA 96 (346)
T ss_pred HHHHHHHH
Confidence 77776654
No 127
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=36.61 E-value=67 Score=35.15 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh---hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA---rsLg~ 198 (344)
+-+.+|++|||||..-+.. |.+.........+|+-.||.==-||+. .++|.
T Consensus 478 ~Id~LivIGGdgs~~~a~~-L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~Gf 531 (745)
T TIGR02478 478 KIDGLLIIGGFEAFEALLQ-LEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGS 531 (745)
T ss_pred CCCEEEEeCChHHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCCCCccCCCH
Confidence 4579999999999876543 222111111246899999999999997 44554
No 128
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=35.24 E-value=19 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=26.2
Q ss_pred eehhhhcCCce-eEeeccccccccchhhhhHHh
Q 019227 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (344)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (344)
++..+..|..+ |||.-|..|+..++..||...
T Consensus 74 i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 74 IDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred HHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 44555667788 999999999999999998763
No 129
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=35.15 E-value=2.3e+02 Score=31.41 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhh--hcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEE
Q 019227 79 PEAPMVVFINSRSGGRHGPELKERLQELMG--KEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (344)
Q Consensus 79 ~~~~vlvIvNP~SG~g~~~~~~~~i~~~L~--~~~~-~-~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~ 154 (344)
..++++||..+..-. ...++++...|. .... + .+..+.+..- ....+++++.+. ..+.|.||++
T Consensus 479 ~~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~----~~~v~~~~~~~~-----~~~~D~IIai 546 (862)
T PRK13805 479 GKKRAFIVTDRFMVE---LGYVDKVTDVLKKRENGVEYEVFSEVEPDPT----LSTVRKGAELMR-----SFKPDTIIAL 546 (862)
T ss_pred CCCEEEEEECcchhh---cchHHHHHHHHhcccCCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEe
Confidence 347888887654321 125677777776 3222 1 1111222211 123344443321 1356899999
Q ss_pred cCchHHHHHHHHH
Q 019227 155 GGDGTVGWVLGSV 167 (344)
Q Consensus 155 GGDGTv~eVln~L 167 (344)
|| |++..+.-.+
T Consensus 547 GG-GSviD~AK~i 558 (862)
T PRK13805 547 GG-GSPMDAAKIM 558 (862)
T ss_pred CC-chHHHHHHHH
Confidence 88 5666665544
No 130
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=34.92 E-value=26 Score=33.56 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfAr 194 (344)
+-+.+|++|||||+..+ +.|.+. ..+++-.||.=--||+.-
T Consensus 92 ~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 92 GIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp TESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTT
T ss_pred CCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCC
Confidence 45799999999998776 445432 238999999988899984
No 131
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=34.78 E-value=20 Score=30.75 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.7
Q ss_pred cEEEEEcCchHHH
Q 019227 149 MRIVVAGGDGTVG 161 (344)
Q Consensus 149 ~~IVv~GGDGTv~ 161 (344)
.++|++|||||-+
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 5899999999854
No 132
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=32.47 E-value=3.3e+02 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhhh
Q 019227 83 MVVFINSRSGGRHGPELKERLQELMGK 109 (344)
Q Consensus 83 vlvIvNP~SG~g~~~~~~~~i~~~L~~ 109 (344)
++||+ .|..|+.+++.+.|...|..
T Consensus 2 i~IiY--~S~tGnTe~vA~~Ia~~l~~ 26 (167)
T TIGR01752 2 IGIFY--GTDTGNTEGIAEKIQKELGE 26 (167)
T ss_pred EEEEE--ECCCChHHHHHHHHHHHhCC
Confidence 56666 45666778899999888864
No 133
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=32.45 E-value=69 Score=33.82 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh-----hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA-----rsLg~ 198 (344)
+-+.+|++|||||...+. .|.+.-. .....+++--||-==-||+. .++|+
T Consensus 164 ~Id~LviIGGd~S~~~A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~~~~id~s~GF 218 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAA-ILAEYFA-KHGCKTQVIGVPKTIDGDLKNEFIETSFGF 218 (555)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-HhCCCccEEEEeeeecCCCCCCcccccCCH
Confidence 457899999999987664 2322100 01246888899987789997 35565
No 134
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=32.15 E-value=84 Score=34.51 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=31.5
Q ss_pred CCcEEEEEcCchHHHHHH----------HHHhhccc-----CCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVL----------GSVGELNK-----QGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVl----------n~L~~~~~-----~~~~~~~plgIIP~GTgNDfA 193 (344)
+-+.+|++|||||+.-+. ..|.+..+ ......+++--||-==-||++
T Consensus 97 ~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 97 GITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 558999999999987654 12222110 012346788889987799998
No 135
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=30.82 E-value=63 Score=28.76 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred CcEEEEEcC-chHHHHHHHHHhhcccCCCCCCCcEEEeecC
Q 019227 148 KMRIVVAGG-DGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (344)
Q Consensus 148 ~~~IVv~GG-DGTv~eVln~L~~~~~~~~~~~~plgIIP~G 187 (344)
...+|-.|| .|....+..+..+. ....+||+|-.
T Consensus 32 g~~lV~GGg~~GlM~a~a~ga~~~------gG~viGi~p~~ 66 (178)
T TIGR00730 32 GWGLVYGGGRVGLMGAIADAAMEN------GGTAVGVNPSG 66 (178)
T ss_pred CCEEEECCChHhHHHHHHHHHHhc------CCeEEEecchh
Confidence 345555566 68888888887653 34579999953
No 136
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.96 E-value=80 Score=33.75 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh-----hhhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA-----rsLg~ 198 (344)
+-+.+|++|||||...+.- |.+.-. .....+++--||-==-||+. .++|+
T Consensus 173 ~Id~LvvIGGddS~~~A~~-Lae~~~-~~~~~i~VIGIPKTIDNDL~~~~td~s~GF 227 (610)
T PLN03028 173 KLDGLVIIGGVTSNTDAAQ-LAETFA-EAKCKTKVVGVPVTLNGDLKNQFVETNVGF 227 (610)
T ss_pred CCCEEEEeCCchHHHHHHH-HHHHHH-HcCCCceEEEeceeeeCCCCCCCCCCCcCH
Confidence 4578999999999876632 222100 01236788888987789997 55665
No 137
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=29.81 E-value=71 Score=33.58 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfAr 194 (344)
+-+.+|++|||||...+. -|.+.-. ....++++--||-==-||+..
T Consensus 161 ~Id~LviIGGdgS~~~A~-~Lae~~~-~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 161 KLDGLVIIGGDDSNTNAA-LLAEYFA-KHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-hcCCCceEEEEeeeecCCCCC
Confidence 457899999999987664 2222100 012457888889877899974
No 138
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=28.32 E-value=1.2e+02 Score=33.35 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCcEEEEEcCchHHHHHH----------HHHhhccc-----CCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVL----------GSVGELNK-----QGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVl----------n~L~~~~~-----~~~~~~~plgIIP~GTgNDfA 193 (344)
+-+.+|++|||||+.-+. ..|.+..+ ......+++--||-==-||+.
T Consensus 94 ~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 94 GIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred CCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 558999999999987653 12221111 012347889999955589998
No 139
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.98 E-value=1.5e+02 Score=25.46 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=36.2
Q ss_pred EEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 019227 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (344)
Q Consensus 151 IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~ 219 (344)
-..++|+ |..+++..+... ...++-+-+|=+|| ||+.+... +....+.+.++++.+..
T Consensus 45 n~g~~G~-t~~~~~~~l~~~----~~~~pd~Vii~~G~-ND~~~~~~-----~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 45 LFAKTGA-TSADLLRQLAPL----PETRFDVAVISIGV-NDVTHLTS-----IARWRKQLAELVDALRA 102 (191)
T ss_pred EEecCCc-CHHHHHHHHHhc----ccCCCCEEEEEecc-cCcCCCCC-----HHHHHHHHHHHHHHHHh
Confidence 4567888 456666655431 13466788888887 88765322 22445677777777665
No 140
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=27.05 E-value=1.8e+02 Score=28.79 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfA 193 (344)
.-+.+|++|||||..-.. -|.+. -.+++-=||-==-||++
T Consensus 94 gId~LvvIGGDgS~~gA~-~Lae~------~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 94 GIDALVVIGGDGSYTGAA-LLAEE------GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CCCEEEEECCCChHHHHH-HHHHh------cCCcEEecCCCccCCCc
Confidence 457999999999988664 23321 23788888887789998
No 141
>PTZ00287 6-phosphofructokinase; Provisional
Probab=26.62 E-value=89 Score=36.51 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhh-----hhCC
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR-----SFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfAr-----sLg~ 198 (344)
+-+.+|++|||||+..+. .|.+.-. .....+.+--||.==-||+.. ++|+
T Consensus 928 ~ID~LVvIGGDgS~t~A~-~LaE~f~-~~gi~i~VIGVPkTIDNDL~~~~tD~TiGF 982 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAA-LLAEYFL-EKKIPTSVVGIPLTGSNNLIHELIETCVGF 982 (1419)
T ss_pred CCCEEEEECCchHHHHHH-HHHHHHH-hcCCCccEEEeCceeeCCCCCCCCcCCCCH
Confidence 458999999999997654 2322100 011233377778877899976 6665
No 142
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=26.27 E-value=2.9e+02 Score=26.01 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCcc
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGN 190 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgN 190 (344)
...|.|++.|-||.-.+-+..+++.-+ ...++|+-+.|.+..+
T Consensus 40 ~GTDaImIGGS~gvt~~~~~~~v~~ik--~~~~lPvilfP~~~~~ 82 (240)
T COG1646 40 AGTDAIMIGGSDGVTEENVDNVVEAIK--ERTDLPVILFPGSPSG 82 (240)
T ss_pred cCCCEEEECCcccccHHHHHHHHHHHH--hhcCCCEEEecCChhc
Confidence 357899999999977665555554311 1478899999976543
No 143
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=25.42 E-value=2e+02 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhc
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKE 110 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~ 110 (344)
++++||+=...| +.+++.+.|.+.|...
T Consensus 1 M~i~IiY~S~tG--nTe~iA~~ia~~l~~~ 28 (140)
T TIGR01754 1 MRILLAYLSLSG--NTEEVAFMIQDYLQKD 28 (140)
T ss_pred CeEEEEEECCCC--hHHHHHHHHHHHHhhC
Confidence 367888855554 5678889998888754
No 144
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=25.15 E-value=3.7e+02 Score=24.91 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCcEEEEEcCchHH----HHHHHHHhhcccCCCCCCCcEEEeec-CCccchhhhhCC
Q 019227 147 QKMRIVVAGGDGTV----GWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGW 198 (344)
Q Consensus 147 ~~~~IVv~GGDGTv----~eVln~L~~~~~~~~~~~~plgIIP~-GTgNDfArsLg~ 198 (344)
..+.+++..||=++ .+.+..|... ....++=+||. -+.+..|-.+|+
T Consensus 92 g~~v~~l~~GDp~~ys~~~~l~~~l~~~-----~~~~~veivPGIss~~a~aa~~g~ 143 (238)
T PRK05948 92 GEDVAFACEGDVSFYSTFTYLAQTLQEL-----YPQVAIQTIPGVCSPLAAAAALGI 143 (238)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc-----CCCCCEEEECChhHHHHHHHHhCC
Confidence 45788999999555 4444444331 13567778885 344555555555
No 145
>PRK06703 flavodoxin; Provisional
Probab=24.43 E-value=4.1e+02 Score=22.13 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhc
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKE 110 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~ 110 (344)
++++|++=. ..|+.+.+.+.|...|...
T Consensus 2 mkv~IiY~S--~tGnT~~iA~~ia~~l~~~ 29 (151)
T PRK06703 2 AKILIAYAS--MSGNTEDIADLIKVSLDAF 29 (151)
T ss_pred CeEEEEEEC--CCchHHHHHHHHHHHHHhc
Confidence 467888844 5566778889998888654
No 146
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=24.20 E-value=70 Score=29.95 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=26.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCc
Q 019227 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (344)
Q Consensus 148 ~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTg 189 (344)
...||++|-||++--|+.+|.+ +|+--+|.-+|
T Consensus 174 ~~lIVvAGMEGaLPsvvagLvD---------~PVIavPTsVG 206 (254)
T COG1691 174 DVLIVVAGMEGALPSVVAGLVD---------VPVIAVPTSVG 206 (254)
T ss_pred CeEEEEcccccchHHHHHhccC---------CCeEecccccc
Confidence 4578899999999999999974 57777776554
No 147
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=24.08 E-value=40 Score=29.80 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred hheehhhhcCCce-eEeeccccccccchhhhhHHh
Q 019227 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (344)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (344)
-.|++.-.-|.++ |||--|+.|+--+...||...
T Consensus 100 eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 100 EFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred HHHHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 3457778889999 999999999999999999763
No 148
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=23.89 E-value=1.3e+02 Score=34.90 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc-ccCC---CCCCCcEEEeecCCccchhh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGEL-NKQG---REPVPPVAIIPLGTGNDLSR 194 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~-~~~~---~~~~~plgIIP~GTgNDfAr 194 (344)
+-+.+|++|||||+..+. .|.+. .+.+ ....+++--||.==-||+..
T Consensus 800 ~Id~LVvIGGDgS~t~A~-~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 800 NMRAIAIVGNSEAATFGA-SLSEQLICMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHhhhccccccCCCcEEEeCccccCCCCC
Confidence 457999999999998654 33321 0000 12468999999888999986
No 149
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.63 E-value=1.4e+02 Score=25.92 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=31.2
Q ss_pred hHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCC--ccchh
Q 019227 129 ACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT--GNDLS 193 (344)
Q Consensus 129 g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GT--gNDfA 193 (344)
..+++|++.+. +....||..|+.|-...+..+..+. ....+||+|.+- .|.+.
T Consensus 18 ~~A~~lg~~La------~~g~~lv~Gg~~GlM~a~a~ga~~~------gg~viGVlp~~l~~~~~~~ 72 (159)
T TIGR00725 18 EIAYRLGKELA------KKGHILINGGRTGVMEAVSKGAREA------GGLVVGILPDEDFAGNPYL 72 (159)
T ss_pred HHHHHHHHHHH------HCCCEEEcCCchhHHHHHHHHHHHC------CCeEEEECChhhccCCCCc
Confidence 34555555431 2234555556677777777776652 346799999764 44443
No 150
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.13 E-value=2.8e+02 Score=29.33 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=54.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 019227 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (344)
Q Consensus 80 ~~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~-~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDG 158 (344)
..++.||+=..| -..+.++....|...++ |++.+...+ ..+..+.++++++.+ ..-.-.|.++|+.+
T Consensus 410 ~~~v~i~~gs~s----d~~~~~~~~~~l~~~g~~~~~~v~sah----r~~~~~~~~~~~~~~----~~~~v~i~~ag~~~ 477 (577)
T PLN02948 410 TPLVGIIMGSDS----DLPTMKDAAEILDSFGVPYEVTIVSAH----RTPERMFSYARSAHS----RGLQVIIAGAGGAA 477 (577)
T ss_pred CCeEEEEECchh----hHHHHHHHHHHHHHcCCCeEEEEECCc----cCHHHHHHHHHHHHH----CCCCEEEEEcCccc
Confidence 334666653333 23466777778887775 787775543 134566777665421 11124567889999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecCCc
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~GTg 189 (344)
.+--|+.++. ..|+-=+|..++
T Consensus 478 ~l~~~~a~~t---------~~pvi~vp~~~~ 499 (577)
T PLN02948 478 HLPGMVASMT---------PLPVIGVPVKTS 499 (577)
T ss_pred cchHHHhhcc---------CCCEEEcCCCCC
Confidence 9999998765 346655676544
No 151
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=23.12 E-value=1.8e+02 Score=25.57 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC--ch
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG--DG 158 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GG--DG 158 (344)
++++|+|-.+.| +.+++.+.|.+.|.. + .++......+ . .. ..+.++|.||++++ -|
T Consensus 1 MkilIvY~S~~G--~T~~iA~~Ia~~l~~-g-~~v~~~~~~~--------~----~~-----~~l~~yD~vIlGspi~~G 59 (177)
T PRK11104 1 MKTLILYSSRDG--QTRKIASYIASELKE-G-IQCDVVNLHR--------I----EE-----PDLSDYDRVVIGASIRYG 59 (177)
T ss_pred CcEEEEEECCCC--hHHHHHHHHHHHhCC-C-CeEEEEEhhh--------c----Cc-----cCHHHCCEEEEECccccC
Confidence 367889977665 456788899888875 3 2222211100 0 00 01345788777665 35
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeecC
Q 019227 159 TVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (344)
Q Consensus 159 Tv~eVln~L~~~~~~~~~~~~plgIIP~G 187 (344)
.+...+..+..... ......+++++-.|
T Consensus 60 ~~~~~~~~fl~~~~-~~l~~K~v~~F~v~ 87 (177)
T PRK11104 60 HFHSALYKFVKKHA-TQLNQMPSAFFSVN 87 (177)
T ss_pred CcCHHHHHHHHHHH-HHhCCCeEEEEEec
Confidence 55555555543211 11245688888877
No 152
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=22.87 E-value=38 Score=31.80 Aligned_cols=30 Identities=7% Similarity=-0.172 Sum_probs=25.6
Q ss_pred ehhhhcCCce-eEeeccccccccchhhhhHH
Q 019227 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (344)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~ 47 (344)
+..+.-|..+ |||.-|.+|+-.++..||..
T Consensus 164 ~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 164 NNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4555667778 99999999999999999975
No 153
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=22.84 E-value=1.1e+02 Score=32.21 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=30.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhh
Q 019227 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (344)
Q Consensus 147 ~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfAr 194 (344)
+-+.+|++|||||...+.. |.+.-. ....++++--||-==-||+..
T Consensus 166 ~Id~LviIGGddS~~~A~~-Lae~~~-~~g~~i~VIGVPKTIDNDl~~ 211 (550)
T cd00765 166 DLDALVVIGGDDSNTNAAL-LAENFR-SKGLKTRVIGVPKTIDGDLKN 211 (550)
T ss_pred CCCEEEEeCCchHHHHHHH-HHHHHH-hcCCCceEEEEeeeecCCCCC
Confidence 4578999999998876542 222100 012457888889877899986
No 154
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.41 E-value=3.1e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=-0.059 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeec
Q 019227 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (344)
Q Consensus 146 ~~~~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~ 186 (344)
...|.+|..|| +|+.|++. ..+|.-++|.
T Consensus 240 ~~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HHCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 45688999999 99999974 3567878877
No 155
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.17 E-value=1.1e+02 Score=26.57 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=23.0
Q ss_pred cEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEee
Q 019227 149 MRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIP 185 (344)
Q Consensus 149 ~~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP 185 (344)
..|++-||=||+.|+...+.. +.|+.+++
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~--------~kpv~~l~ 122 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYAL--------GGPVVVLR 122 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHc--------CCCEEEEE
Confidence 356677999999999988763 46888887
No 156
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.00 E-value=1.3e+02 Score=25.49 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=32.8
Q ss_pred EEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeecCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 019227 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (344)
Q Consensus 152 Vv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArsLg~~~~~~~~~~~al~~~l~~i~~ 219 (344)
...+||. ..+++..+... .....+.+.+|=+|| ||+.+... +....+.+..+++.+.+
T Consensus 28 ~Gi~G~~-~~~~~~~~~~~---~~~~~p~~vvi~~G~-ND~~~~~~-----~~~~~~~~~~lv~~i~~ 85 (171)
T cd04502 28 RGFGGST-LADCLHYFDRL---VLPYQPRRVVLYAGD-NDLASGRT-----PEEVLRDFRELVNRIRA 85 (171)
T ss_pred cCcccch-HHHHHHHHHhh---hccCCCCEEEEEEec-CcccCCCC-----HHHHHHHHHHHHHHHHH
Confidence 3557774 44555444331 122467788888887 88754221 23445666777776654
No 157
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.70 E-value=77 Score=30.36 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=17.2
Q ss_pred CCCcEEEEEcCch-HHHHHHHHHhh
Q 019227 146 RQKMRIVVAGGDG-TVGWVLGSVGE 169 (344)
Q Consensus 146 ~~~~~IVv~GGDG-Tv~eVln~L~~ 169 (344)
.+...||+.+||| +.+.-++.|..
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig~~eL~t 99 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIGLGHLPH 99 (279)
T ss_pred CCCCcEEEEECChHHHHccHHHHHH
Confidence 3456899999999 57666666643
No 158
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=21.67 E-value=97 Score=25.92 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEee
Q 019227 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIP 185 (344)
Q Consensus 150 ~IVv~GGDGTv~eVln~L~~~~~~~~~~~~plgIIP 185 (344)
.|+.-||=||+-|+...+.-.+ .......|+.++=
T Consensus 57 ~I~lPGG~GTl~El~~~~~~~~-l~~~~~~Piil~~ 91 (133)
T PF03641_consen 57 FIALPGGIGTLDELFEALTLMQ-LGRHNKVPIILLN 91 (133)
T ss_dssp EEEES-SHHHHHHHHHHHHHHH-TTSSTS-EEEEEE
T ss_pred EEEEecCCchHHHHHHHHHHHh-hccccCCCEEEeC
Confidence 5667799999999999885321 1222333766654
No 159
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=21.18 E-value=4.9e+02 Score=25.99 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 019227 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (344)
Q Consensus 81 ~~vlvIvNP~SG~g~~~~~~~~i~~~L~~~~~~~l~~~~~~~~~t~~~g~a~~la~~~~~~~~~~~~~~~IVv~GGDGTv 160 (344)
++.+|+.-+.. ..-..+++...|...+. ........+ -..++.+++++.+. ..+.|.||.+|| |++
T Consensus 31 ~~~lvv~g~~~----~~~~~~~~~~~l~~~g~-~~~~~~~~~---a~~~ev~~~~~~~~-----~~~~d~vIGVGG-Gk~ 96 (360)
T COG0371 31 SRALVVTGENT----YAIAGEKVEKSLKDEGL-VVHVVFVGE---ASEEEVERLAAEAG-----EDGADVVIGVGG-GKT 96 (360)
T ss_pred CceEEEEChhH----HHHHHHHHHHHhcccCc-ceeeeecCc---cCHHHHHHHHHHhc-----ccCCCEEEEecC-cHH
Confidence 66777664432 22334567777776532 221111111 12234555555431 135688888888 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeecCCccchhhh
Q 019227 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRS 195 (344)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgIIP~GTgNDfArs 195 (344)
..++-.+... ...|+-++|.=..+|=.-|
T Consensus 97 iD~aK~~A~~------~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 97 IDTAKAAAYR------LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHH------cCCCEEEecCccccccccC
Confidence 8888777653 5789999998666664433
Done!