BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019228
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 315
+LDIGCG G + H F+ L + + S ++ +R +S +LP+
Sbjct: 88 AVLDIGCGEGYY-THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSD 146
Query: 316 LSFDML 321
S D +
Sbjct: 147 TSXDAI 152
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 314
+ +LDIGC G+ GA + I + + Q + L+ ++G + PY
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDH---VVLGDIETXDXPYE 90
Query: 315 SLSFD 319
FD
Sbjct: 91 EEQFD 95
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 234 SHQIAEMIGLRNESNFILAGV--------RTILDIGCGYG 265
S Q ++ I +RN +NFI A + ++LD+GCG G
Sbjct: 37 SRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKG 76
>pdb|3K42|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 7.0
pdb|3K42|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 7.0
pdb|3K43|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 6.5
pdb|3K43|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 6.5
Length = 154
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 134 NYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVL 170
N F S + L Y GDE D HCG+E ++ +++
Sbjct: 81 NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMI 117
>pdb|3K41|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M BOUND TO
MAN-6-P
pdb|3K41|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M BOUND TO
MAN-6-P
Length = 160
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 134 NYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVL 170
N F S + L Y GDE D HCG+E ++ +++
Sbjct: 81 NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMI 117
>pdb|1KEO|A Chain A, Twists And Turns Of The Cd-Mpr: Ligand-Bound Versus
Ligand-Free Receptor
pdb|1KEO|B Chain B, Twists And Turns Of The Cd-Mpr: Ligand-Bound Versus
Ligand-Free Receptor
pdb|2RL7|A Chain A, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|B Chain B, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|C Chain C, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|D Chain D, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL8|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To M6p
pdb|2RL8|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To M6p
pdb|2RL9|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To Trimannoside
pdb|2RL9|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To Trimannoside
pdb|2RLB|A Chain A, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 6.5 Bound To M6p In Absence Of Mn
pdb|2RLB|B Chain B, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 6.5 Bound To M6p In Absence Of Mn
pdb|3CY4|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 7.4
pdb|3CY4|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 7.4
Length = 154
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 134 NYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVL 170
N F S + L Y GDE D HCG+E ++ +++
Sbjct: 81 NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMI 117
>pdb|1M6P|A Chain A, Extracytoplasmic Domain Of Bovine Cation-Dependent Mannose
6-Phosphate Receptor
pdb|1M6P|B Chain B, Extracytoplasmic Domain Of Bovine Cation-Dependent Mannose
6-Phosphate Receptor
pdb|1C39|A Chain A, Structure Of Cation-dependent Mannose 6-phosphate Receptor
Bound To Pentamannosyl Phosphate
pdb|1C39|B Chain B, Structure Of Cation-dependent Mannose 6-phosphate Receptor
Bound To Pentamannosyl Phosphate
Length = 152
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 134 NYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVL 170
N F S + L Y GDE D HCG+E ++ +++
Sbjct: 79 NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMI 115
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 27/89 (30%)
Query: 261 GCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-------KQLPY 313
G G+ AHL S L+T CI++ A P ++G AS K Y
Sbjct: 45 GYGFTGTHAHLPSDRLITSCISDCYA-------------PLLLGEDASDHSRLWTKLARY 91
Query: 314 PSLSF----DMLHCARCGVD---WDQKGK 335
PSL + + H A VD WD K K
Sbjct: 92 PSLQWVGRAGITHLALAAVDVALWDIKAK 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,932,038
Number of Sequences: 62578
Number of extensions: 395094
Number of successful extensions: 633
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 8
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)