Query 019228
Match_columns 344
No_of_seqs 305 out of 1286
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2.4E-65 5.3E-70 516.0 12.6 197 134-337 1-201 (506)
2 COG2226 UbiE Methylase involve 99.4 7.2E-14 1.6E-18 131.8 3.8 106 226-332 16-134 (238)
3 PF01209 Ubie_methyltran: ubiE 99.3 7E-13 1.5E-17 123.8 4.8 108 225-332 11-131 (233)
4 PRK05785 hypothetical protein; 99.3 3.4E-12 7.3E-17 118.0 6.8 101 226-331 14-124 (226)
5 PLN02233 ubiquinone biosynthes 99.2 5.3E-11 1.1E-15 112.1 6.9 76 255-331 75-159 (261)
6 PF07021 MetW: Methionine bios 99.2 4.4E-11 9.4E-16 110.0 5.9 87 234-334 4-92 (193)
7 PF08241 Methyltransf_11: Meth 99.1 6.1E-11 1.3E-15 90.8 4.4 70 258-330 1-73 (95)
8 PRK10258 biotin biosynthesis p 99.0 9.2E-10 2E-14 101.5 8.2 73 254-332 43-117 (251)
9 TIGR03587 Pse_Me-ase pseudamin 99.0 8E-10 1.7E-14 101.1 7.2 75 255-333 45-121 (204)
10 PRK14103 trans-aconitate 2-met 98.9 1.6E-09 3.4E-14 100.7 6.9 73 255-332 31-103 (255)
11 PTZ00098 phosphoethanolamine N 98.9 4.7E-09 1E-13 99.1 7.9 90 233-332 40-132 (263)
12 PRK11088 rrmA 23S rRNA methylt 98.9 5.9E-09 1.3E-13 98.2 8.2 72 255-326 87-160 (272)
13 PLN02244 tocopherol O-methyltr 98.9 6.8E-09 1.5E-13 101.4 8.7 76 254-332 119-201 (340)
14 PF13649 Methyltransf_25: Meth 98.9 9.5E-10 2.1E-14 88.1 2.1 82 257-339 1-89 (101)
15 TIGR02752 MenG_heptapren 2-hep 98.8 5.2E-09 1.1E-13 94.9 6.5 75 255-329 47-126 (231)
16 KOG1541 Predicted protein carb 98.8 1.9E-08 4.2E-13 95.2 8.0 90 233-333 36-127 (270)
17 PRK08317 hypothetical protein; 98.8 3.5E-08 7.6E-13 87.7 8.9 94 231-332 5-102 (241)
18 TIGR02081 metW methionine bios 98.8 2.6E-08 5.7E-13 89.0 8.0 83 234-330 4-88 (194)
19 KOG1540 Ubiquinone biosynthesi 98.7 8.6E-09 1.9E-13 99.1 5.0 109 225-333 64-193 (296)
20 PF13489 Methyltransf_23: Meth 98.7 2.2E-08 4.9E-13 84.0 6.5 86 231-332 7-92 (161)
21 PRK06202 hypothetical protein; 98.7 3.7E-08 8.1E-13 90.2 8.2 76 254-332 61-144 (232)
22 PRK07580 Mg-protoporphyrin IX 98.7 4.5E-08 9.7E-13 88.2 7.3 74 255-334 65-144 (230)
23 PRK11207 tellurite resistance 98.7 4.8E-08 1E-12 88.2 7.2 73 255-331 32-109 (197)
24 PRK01683 trans-aconitate 2-met 98.6 6.5E-08 1.4E-12 89.4 7.6 75 255-332 33-107 (258)
25 PLN02396 hexaprenyldihydroxybe 98.6 1.8E-08 4E-13 98.7 4.2 75 255-332 133-213 (322)
26 TIGR02021 BchM-ChlM magnesium 98.6 4.7E-08 1E-12 88.6 6.4 91 231-333 39-135 (219)
27 PF13847 Methyltransf_31: Meth 98.6 4E-08 8.7E-13 84.1 5.6 75 255-331 5-87 (152)
28 PRK15068 tRNA mo(5)U34 methylt 98.6 1.2E-07 2.7E-12 92.4 8.3 87 234-331 111-203 (322)
29 TIGR00477 tehB tellurite resis 98.6 1.2E-07 2.6E-12 85.6 7.6 73 255-331 32-108 (195)
30 PLN02585 magnesium protoporphy 98.6 1E-07 2.2E-12 93.3 7.6 73 255-333 146-228 (315)
31 COG2227 UbiG 2-polyprenyl-3-me 98.6 2.4E-08 5.3E-13 94.8 3.1 77 255-334 61-141 (243)
32 PLN02336 phosphoethanolamine N 98.6 1.3E-07 2.8E-12 95.3 8.3 75 255-332 268-347 (475)
33 smart00138 MeTrc Methyltransfe 98.6 7.9E-08 1.7E-12 91.2 5.4 80 255-334 101-220 (264)
34 PRK11036 putative S-adenosyl-L 98.6 1.3E-07 2.7E-12 88.2 6.6 73 255-330 46-125 (255)
35 TIGR02072 BioC biotin biosynth 98.5 1.1E-07 2.4E-12 84.9 5.9 73 255-331 36-111 (240)
36 PF12847 Methyltransf_18: Meth 98.5 1.6E-07 3.5E-12 75.1 5.2 74 255-331 3-85 (112)
37 PLN02336 phosphoethanolamine N 98.5 2.1E-07 4.5E-12 93.9 6.8 88 234-332 26-118 (475)
38 TIGR00452 methyltransferase, p 98.4 5.6E-07 1.2E-11 88.1 8.2 75 255-332 123-203 (314)
39 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 5.2E-07 1.1E-11 80.1 7.2 75 255-329 41-118 (223)
40 PRK12335 tellurite resistance 98.4 4.5E-07 9.8E-12 86.4 7.1 72 255-330 122-197 (287)
41 PLN02490 MPBQ/MSBQ methyltrans 98.4 6.3E-07 1.4E-11 88.8 7.4 76 255-333 115-194 (340)
42 COG4976 Predicted methyltransf 98.4 7.2E-08 1.6E-12 91.8 0.6 85 236-328 113-199 (287)
43 PRK00216 ubiE ubiquinone/menaq 98.4 1.3E-06 2.8E-11 78.4 8.3 77 255-331 53-135 (239)
44 TIGR00740 methyltransferase, p 98.3 5.6E-07 1.2E-11 82.8 5.0 76 255-332 55-137 (239)
45 PRK15451 tRNA cmo(5)U34 methyl 98.3 9.1E-07 2E-11 82.4 6.3 75 255-331 58-139 (247)
46 PF08003 Methyltransf_9: Prote 98.3 1.5E-06 3.2E-11 85.4 7.8 87 234-330 104-195 (315)
47 PF08242 Methyltransf_12: Meth 98.3 1.8E-07 3.8E-12 74.2 0.9 72 258-330 1-79 (99)
48 PRK06922 hypothetical protein; 98.3 9.9E-07 2.1E-11 94.0 6.7 76 255-331 420-501 (677)
49 PF05401 NodS: Nodulation prot 98.3 8E-07 1.7E-11 82.5 5.2 81 253-339 43-128 (201)
50 PRK11873 arsM arsenite S-adeno 98.3 1.9E-06 4E-11 80.7 7.1 75 255-330 79-159 (272)
51 PRK13944 protein-L-isoaspartat 98.3 4.1E-06 8.9E-11 76.1 8.7 87 233-327 60-152 (205)
52 PRK11705 cyclopropane fatty ac 98.2 2.4E-06 5.1E-11 85.5 7.4 84 232-329 154-240 (383)
53 COG4106 Tam Trans-aconitate me 98.2 1.7E-06 3.7E-11 81.9 5.4 80 253-335 30-109 (257)
54 KOG3010 Methyltransferase [Gen 98.2 1.7E-06 3.6E-11 82.7 5.3 71 254-333 34-115 (261)
55 smart00650 rADc Ribosomal RNA 98.2 6.2E-06 1.3E-10 72.4 8.0 67 255-324 15-84 (169)
56 PF02353 CMAS: Mycolic acid cy 98.2 2.8E-06 6.2E-11 81.5 6.3 84 233-330 50-140 (273)
57 PRK13942 protein-L-isoaspartat 98.2 7.1E-06 1.5E-10 75.2 8.5 87 233-327 64-155 (212)
58 COG2230 Cfa Cyclopropane fatty 98.2 4.8E-06 1E-10 81.0 7.7 89 231-331 58-151 (283)
59 smart00828 PKS_MT Methyltransf 98.2 3E-06 6.4E-11 76.6 5.6 73 256-330 2-80 (224)
60 PF03848 TehB: Tellurite resis 98.1 1.3E-05 2.7E-10 74.0 9.4 73 255-331 32-108 (192)
61 KOG1270 Methyltransferases [Co 98.1 1.4E-06 3E-11 84.2 3.0 70 255-330 91-171 (282)
62 KOG2940 Predicted methyltransf 98.1 2.3E-06 5E-11 81.9 4.3 79 254-335 73-154 (325)
63 TIGR00080 pimt protein-L-isoas 98.1 1.2E-05 2.5E-10 73.4 8.3 86 234-327 66-156 (215)
64 PRK05134 bifunctional 3-demeth 98.1 1.3E-05 2.8E-10 73.0 7.8 74 255-331 50-128 (233)
65 PRK00121 trmB tRNA (guanine-N( 98.0 5.5E-06 1.2E-10 75.3 5.0 76 255-332 42-125 (202)
66 PRK15001 SAM-dependent 23S rib 98.0 1.2E-05 2.6E-10 80.8 7.8 100 216-327 197-308 (378)
67 PRK00107 gidB 16S rRNA methylt 98.0 8.1E-06 1.8E-10 74.3 6.0 69 255-325 47-120 (187)
68 PRK00274 ksgA 16S ribosomal RN 98.0 1.7E-05 3.6E-10 75.4 7.7 81 231-324 28-112 (272)
69 PRK14896 ksgA 16S ribosomal RN 98.0 2.7E-05 5.9E-10 73.4 8.6 80 231-325 15-99 (258)
70 PF05175 MTS: Methyltransferas 98.0 4.9E-05 1.1E-09 67.1 9.6 83 230-324 16-105 (170)
71 PRK11188 rrmJ 23S rRNA methylt 98.0 7.6E-06 1.6E-10 75.1 4.5 70 255-331 53-130 (209)
72 PRK14967 putative methyltransf 98.0 4E-05 8.6E-10 70.3 9.2 67 255-324 38-108 (223)
73 TIGR00406 prmA ribosomal prote 98.0 2.5E-05 5.5E-10 74.8 8.1 69 255-325 161-233 (288)
74 PRK09489 rsmC 16S ribosomal RN 98.0 3.8E-05 8.3E-10 75.9 9.5 89 228-327 179-271 (342)
75 TIGR03840 TMPT_Se_Te thiopurin 97.9 3.8E-05 8.2E-10 71.1 8.7 73 255-332 36-128 (213)
76 TIGR02469 CbiT precorrin-6Y C5 97.9 4.5E-05 9.8E-10 61.4 7.9 72 255-327 21-98 (124)
77 TIGR00537 hemK_rel_arch HemK-r 97.9 4.4E-05 9.5E-10 67.4 8.1 71 255-330 21-95 (179)
78 TIGR03534 RF_mod_PrmC protein- 97.9 3.4E-05 7.4E-10 70.3 7.5 85 229-324 72-161 (251)
79 TIGR00138 gidB 16S rRNA methyl 97.9 2E-05 4.3E-10 71.0 5.9 69 255-325 44-117 (181)
80 PF13659 Methyltransf_26: Meth 97.9 9.3E-06 2E-10 65.6 3.2 68 256-325 3-78 (117)
81 TIGR01983 UbiG ubiquinone bios 97.8 2.6E-05 5.7E-10 70.1 5.7 73 255-330 47-125 (224)
82 PRK13168 rumA 23S rRNA m(5)U19 97.8 3.4E-05 7.3E-10 78.1 7.0 84 230-324 282-374 (443)
83 COG2813 RsmC 16S RNA G1207 met 97.8 5.1E-05 1.1E-09 74.4 7.7 99 215-325 126-232 (300)
84 TIGR00091 tRNA (guanine-N(7)-) 97.8 2.5E-05 5.4E-10 70.4 5.2 76 255-332 18-101 (194)
85 TIGR02716 C20_methyl_CrtF C-20 97.8 5.9E-05 1.3E-09 72.1 7.9 75 254-334 150-232 (306)
86 PLN03075 nicotianamine synthas 97.8 3.3E-05 7.2E-10 75.6 5.5 82 254-336 124-213 (296)
87 TIGR03438 probable methyltrans 97.8 5E-05 1.1E-09 73.2 6.5 79 255-334 65-155 (301)
88 TIGR00478 tly hemolysin TlyA f 97.8 0.00011 2.4E-09 69.2 8.6 71 255-327 77-153 (228)
89 TIGR01177 conserved hypothetic 97.8 8.8E-05 1.9E-09 72.2 8.1 67 255-324 184-255 (329)
90 PF03141 Methyltransf_29: Puta 97.7 2.6E-05 5.5E-10 80.9 4.5 80 253-334 365-444 (506)
91 PRK13255 thiopurine S-methyltr 97.7 0.00012 2.5E-09 68.1 8.4 74 255-331 39-130 (218)
92 PHA03411 putative methyltransf 97.7 9E-05 2E-09 72.1 7.4 71 255-329 66-138 (279)
93 PRK08287 cobalt-precorrin-6Y C 97.7 0.00014 3.1E-09 64.5 8.1 69 255-326 33-106 (187)
94 PRK03522 rumB 23S rRNA methylu 97.7 8.5E-05 1.8E-09 72.0 7.0 96 217-324 142-247 (315)
95 PRK14968 putative methyltransf 97.7 0.00014 3E-09 63.2 7.6 67 255-327 25-100 (188)
96 TIGR00755 ksgA dimethyladenosi 97.7 0.00017 3.7E-09 67.5 8.4 81 231-324 15-101 (253)
97 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00011 2.4E-09 74.4 7.5 76 255-332 124-206 (390)
98 PHA03412 putative methyltransf 97.7 5.8E-05 1.3E-09 72.0 5.0 67 255-324 51-121 (241)
99 PRK13943 protein-L-isoaspartat 97.7 0.00015 3.2E-09 71.5 8.0 73 255-327 82-159 (322)
100 PRK04266 fibrillarin; Provisio 97.6 0.00012 2.7E-09 68.4 7.0 69 255-325 74-149 (226)
101 PRK00312 pcm protein-L-isoaspa 97.6 0.00023 4.9E-09 64.5 8.2 70 255-327 80-154 (212)
102 PRK09328 N5-glutamine S-adenos 97.6 0.00014 3E-09 67.6 6.6 66 255-324 110-182 (275)
103 cd02440 AdoMet_MTases S-adenos 97.6 0.00013 2.8E-09 54.4 5.2 72 256-329 1-78 (107)
104 PRK04148 hypothetical protein; 97.6 0.00021 4.7E-09 62.6 7.2 68 255-327 18-87 (134)
105 COG2264 PrmA Ribosomal protein 97.6 0.00018 3.9E-09 70.6 7.3 78 234-325 153-237 (300)
106 PRK00517 prmA ribosomal protei 97.6 9E-05 1.9E-09 69.4 4.8 62 255-324 121-186 (250)
107 PRK14966 unknown domain/N5-glu 97.6 0.00032 6.9E-09 71.8 9.1 68 255-325 253-327 (423)
108 KOG4300 Predicted methyltransf 97.5 0.00012 2.6E-09 69.3 4.9 69 256-327 79-155 (252)
109 PRK10901 16S rRNA methyltransf 97.5 0.00026 5.6E-09 71.5 7.6 68 255-323 246-319 (427)
110 COG4123 Predicted O-methyltran 97.5 0.00014 3E-09 69.7 5.1 70 254-324 45-122 (248)
111 PTZ00338 dimethyladenosine tra 97.5 0.00037 8.1E-09 67.7 7.8 79 231-324 22-108 (294)
112 TIGR03533 L3_gln_methyl protei 97.4 0.00023 4.9E-09 68.4 6.0 66 255-324 123-196 (284)
113 TIGR03704 PrmC_rel_meth putati 97.4 0.00086 1.9E-08 63.4 8.9 100 215-324 54-160 (251)
114 TIGR00479 rumA 23S rRNA (uraci 97.4 0.0003 6.4E-09 70.7 6.0 90 224-324 267-369 (431)
115 TIGR00536 hemK_fam HemK family 97.4 0.00033 7.2E-09 66.8 6.0 66 255-324 116-189 (284)
116 TIGR00438 rrmJ cell division p 97.3 0.00033 7E-09 62.4 5.4 61 255-326 34-107 (188)
117 PRK11805 N5-glutamine S-adenos 97.3 0.00029 6.3E-09 68.6 5.2 66 255-324 135-208 (307)
118 TIGR00563 rsmB ribosomal RNA s 97.3 0.00056 1.2E-08 69.0 7.3 68 255-323 240-315 (426)
119 PTZ00146 fibrillarin; Provisio 97.3 0.00033 7.2E-09 68.5 5.3 71 255-326 134-211 (293)
120 PRK00377 cbiT cobalt-precorrin 97.3 0.00057 1.2E-08 61.5 6.3 69 255-324 42-118 (198)
121 PRK14904 16S rRNA methyltransf 97.3 0.00065 1.4E-08 69.0 7.3 68 255-323 252-324 (445)
122 PRK00811 spermidine synthase; 97.2 0.0009 1.9E-08 64.3 7.7 69 253-325 76-158 (283)
123 PRK11727 23S rRNA mA1618 methy 97.2 0.00074 1.6E-08 66.8 7.1 101 229-333 90-202 (321)
124 PRK14903 16S rRNA methyltransf 97.2 0.00064 1.4E-08 69.1 6.7 69 255-323 239-313 (431)
125 PF01135 PCMT: Protein-L-isoas 97.2 0.00077 1.7E-08 62.6 6.6 83 233-327 60-151 (209)
126 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.00092 2E-08 61.6 7.0 101 214-324 21-128 (199)
127 PRK14901 16S rRNA methyltransf 97.2 0.001 2.2E-08 67.4 7.6 68 255-323 254-331 (434)
128 PF06325 PrmA: Ribosomal prote 97.2 0.00099 2.1E-08 65.1 7.1 67 255-324 163-232 (295)
129 KOG1271 Methyltransferases [Ge 97.2 0.00065 1.4E-08 63.4 5.5 72 255-327 69-146 (227)
130 TIGR02085 meth_trns_rumB 23S r 97.1 0.0019 4.2E-08 64.3 8.3 98 215-324 200-307 (374)
131 PRK14902 16S rRNA methyltransf 97.1 0.0015 3.4E-08 66.1 7.7 69 255-324 252-327 (444)
132 COG2890 HemK Methylase of poly 97.0 0.00089 1.9E-08 64.6 5.2 74 256-334 113-190 (280)
133 COG0500 SmtA SAM-dependent met 97.0 0.0025 5.4E-08 47.6 6.5 70 257-332 52-133 (257)
134 TIGR00446 nop2p NOL1/NOP2/sun 97.0 0.0014 3.1E-08 62.1 6.2 69 255-323 73-146 (264)
135 PRK04457 spermidine synthase; 97.0 0.00096 2.1E-08 63.5 5.0 68 254-324 67-143 (262)
136 PF00891 Methyltransf_2: O-met 97.0 0.002 4.3E-08 59.4 6.6 76 253-337 100-178 (241)
137 PRK01544 bifunctional N5-gluta 96.9 0.00092 2E-08 69.4 4.6 66 255-324 140-213 (506)
138 PRK07402 precorrin-6B methylas 96.9 0.0019 4.2E-08 57.9 6.1 41 255-296 42-82 (196)
139 PRK01581 speE spermidine synth 96.9 0.0024 5.2E-08 64.5 7.0 69 253-324 150-233 (374)
140 PLN02366 spermidine synthase 96.8 0.0027 5.8E-08 62.3 6.6 68 253-324 91-172 (308)
141 COG2518 Pcm Protein-L-isoaspar 96.7 0.0073 1.6E-07 56.7 8.3 81 233-327 60-148 (209)
142 PRK03612 spermidine synthase; 96.5 0.0047 1E-07 64.3 6.3 68 254-324 298-380 (521)
143 COG2263 Predicted RNA methylas 96.5 0.0099 2.1E-07 55.5 7.5 63 254-324 46-115 (198)
144 PF05219 DREV: DREV methyltran 96.4 0.0073 1.6E-07 58.6 6.7 93 221-327 65-161 (265)
145 TIGR00417 speE spermidine synt 96.4 0.0084 1.8E-07 57.0 6.7 72 253-325 72-153 (270)
146 PF03291 Pox_MCEL: mRNA cappin 96.4 0.0068 1.5E-07 60.1 6.3 73 254-329 63-157 (331)
147 PRK13256 thiopurine S-methyltr 96.4 0.015 3.3E-07 54.9 8.3 76 255-333 45-140 (226)
148 PLN02232 ubiquinone biosynthes 96.4 0.0041 8.8E-08 54.6 4.1 47 283-331 2-58 (160)
149 PF05148 Methyltransf_8: Hypot 96.3 0.011 2.5E-07 55.8 6.7 60 255-328 74-133 (219)
150 PLN02781 Probable caffeoyl-CoA 96.2 0.0069 1.5E-07 56.7 5.1 69 254-324 69-151 (234)
151 COG2242 CobL Precorrin-6B meth 96.1 0.016 3.6E-07 53.6 6.8 69 255-325 36-110 (187)
152 PF01739 CheR: CheR methyltran 96.0 0.015 3.3E-07 53.6 6.4 80 255-334 33-153 (196)
153 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.0078 1.7E-07 64.9 4.8 66 255-324 540-615 (702)
154 KOG2361 Predicted methyltransf 96.0 0.014 3E-07 56.4 5.9 95 234-334 58-161 (264)
155 PF10294 Methyltransf_16: Puta 95.9 0.022 4.8E-07 50.8 6.8 101 224-329 18-131 (173)
156 KOG1499 Protein arginine N-met 95.9 0.013 2.8E-07 58.7 5.6 68 255-324 62-134 (346)
157 PF01170 UPF0020: Putative RNA 95.7 0.019 4E-07 51.7 5.4 75 255-332 30-118 (179)
158 COG0030 KsgA Dimethyladenosine 95.7 0.019 4.2E-07 55.5 5.8 79 231-324 16-102 (259)
159 KOG2904 Predicted methyltransf 95.7 0.039 8.4E-07 54.5 7.8 88 229-324 129-229 (328)
160 PRK15128 23S rRNA m(5)C1962 me 95.7 0.012 2.6E-07 59.6 4.3 66 255-324 222-300 (396)
161 PLN02672 methionine S-methyltr 95.3 0.015 3.3E-07 65.8 3.9 40 255-295 120-159 (1082)
162 KOG1975 mRNA cap methyltransfe 95.3 0.025 5.4E-07 56.9 5.0 73 254-328 118-207 (389)
163 COG2265 TrmA SAM-dependent met 95.3 0.049 1.1E-06 56.0 7.2 99 215-323 260-368 (432)
164 KOG1331 Predicted methyltransf 95.2 0.007 1.5E-07 59.4 0.9 72 255-332 47-118 (293)
165 PF09243 Rsm22: Mitochondrial 95.2 0.051 1.1E-06 52.2 6.7 91 231-332 19-117 (274)
166 TIGR00095 RNA methyltransferas 95.1 0.062 1.3E-06 48.8 6.8 39 255-295 51-89 (189)
167 PRK00050 16S rRNA m(4)C1402 me 95.1 0.025 5.4E-07 55.5 4.4 87 234-328 8-101 (296)
168 PF05958 tRNA_U5-meth_tr: tRNA 95.1 0.047 1E-06 54.2 6.3 59 223-295 171-235 (352)
169 PF02390 Methyltransf_4: Putat 95.0 0.04 8.6E-07 50.5 5.0 76 256-333 20-103 (195)
170 KOG3045 Predicted RNA methylas 95.0 0.045 9.8E-07 53.7 5.6 59 255-329 182-240 (325)
171 PRK10611 chemotaxis methyltran 94.9 0.056 1.2E-06 52.8 6.2 78 256-333 118-239 (287)
172 TIGR02143 trmA_only tRNA (urac 94.8 0.066 1.4E-06 53.2 6.4 55 230-296 183-237 (353)
173 COG0220 Predicted S-adenosylme 94.8 0.053 1.1E-06 51.3 5.5 77 255-333 50-134 (227)
174 COG1041 Predicted DNA modifica 94.8 0.062 1.3E-06 54.1 6.2 67 255-324 199-271 (347)
175 PF13679 Methyltransf_32: Meth 94.5 0.053 1.1E-06 46.6 4.4 41 229-273 5-45 (141)
176 PRK11760 putative 23S rRNA C24 94.4 0.26 5.5E-06 49.9 9.5 66 255-325 213-278 (357)
177 KOG2187 tRNA uracil-5-methyltr 94.3 0.092 2E-06 55.3 6.4 74 217-300 352-431 (534)
178 KOG3178 Hydroxyindole-O-methyl 94.3 0.045 9.8E-07 54.9 4.0 75 253-337 177-256 (342)
179 PRK05031 tRNA (uracil-5-)-meth 94.3 0.079 1.7E-06 52.8 5.7 61 224-296 182-246 (362)
180 PF06080 DUF938: Protein of un 94.3 0.12 2.5E-06 48.6 6.5 87 231-327 12-112 (204)
181 PF05724 TPMT: Thiopurine S-me 94.3 0.082 1.8E-06 49.4 5.4 73 255-332 39-131 (218)
182 KOG0820 Ribosomal RNA adenine 94.1 0.22 4.7E-06 49.2 8.1 61 255-324 60-130 (315)
183 PF05891 Methyltransf_PK: AdoM 93.8 0.13 2.8E-06 48.8 5.8 82 253-337 55-142 (218)
184 PRK01544 bifunctional N5-gluta 92.9 0.14 3.1E-06 53.4 5.0 79 253-333 347-432 (506)
185 PLN02476 O-methyltransferase 92.9 0.11 2.4E-06 50.7 3.9 67 254-324 119-201 (278)
186 TIGR01444 fkbM_fam methyltrans 92.8 0.11 2.4E-06 43.4 3.4 20 256-275 1-20 (143)
187 KOG1661 Protein-L-isoaspartate 92.4 0.4 8.6E-06 45.9 6.8 71 255-327 84-172 (237)
188 PF00398 RrnaAD: Ribosomal RNA 92.4 0.51 1.1E-05 44.7 7.6 79 230-323 15-103 (262)
189 COG1352 CheR Methylase of chem 92.3 0.33 7.1E-06 47.2 6.3 81 255-335 98-220 (268)
190 PF02384 N6_Mtase: N-6 DNA Met 92.3 0.26 5.6E-06 47.1 5.5 97 223-333 25-138 (311)
191 PF01728 FtsJ: FtsJ-like methy 92.2 0.28 6.2E-06 43.2 5.3 31 254-284 24-59 (181)
192 COG2519 GCD14 tRNA(1-methylade 92.2 0.41 8.8E-06 46.5 6.7 87 235-332 84-177 (256)
193 PRK04338 N(2),N(2)-dimethylgua 92.2 0.12 2.7E-06 52.1 3.3 68 255-324 59-132 (382)
194 KOG3987 Uncharacterized conser 91.8 0.12 2.6E-06 49.6 2.6 96 220-327 84-179 (288)
195 PF05185 PRMT5: PRMT5 arginine 91.8 0.48 1E-05 49.0 7.2 67 255-324 188-265 (448)
196 COG3963 Phospholipid N-methylt 91.8 0.34 7.3E-06 45.0 5.3 73 255-329 50-129 (194)
197 PLN02823 spermine synthase 91.6 0.49 1.1E-05 47.2 6.8 69 253-324 103-183 (336)
198 PF02475 Met_10: Met-10+ like- 91.6 0.82 1.8E-05 42.5 7.8 99 212-324 69-176 (200)
199 PLN02668 indole-3-acetate carb 91.3 0.33 7.1E-06 49.6 5.3 22 310-333 156-177 (386)
200 PF08704 GCD14: tRNA methyltra 90.5 0.51 1.1E-05 45.3 5.6 87 234-332 29-127 (247)
201 KOG3420 Predicted RNA methylas 89.9 0.31 6.8E-06 44.5 3.3 63 255-324 50-121 (185)
202 TIGR02987 met_A_Alw26 type II 89.8 0.42 9.2E-06 49.6 4.7 43 255-297 33-82 (524)
203 KOG2915 tRNA(1-methyladenosine 87.9 1.5 3.2E-05 43.6 6.6 89 234-331 94-190 (314)
204 PF02527 GidB: rRNA small subu 87.8 1.1 2.4E-05 41.0 5.5 67 256-326 51-124 (184)
205 PRK11783 rlmL 23S rRNA m(2)G24 87.6 1.3 2.9E-05 48.0 6.8 45 280-324 258-310 (702)
206 COG4122 Predicted O-methyltran 87.5 1.8 4E-05 41.0 6.9 68 254-323 60-138 (219)
207 KOG3191 Predicted N6-DNA-methy 85.9 2 4.3E-05 40.5 6.0 65 254-324 44-117 (209)
208 KOG1500 Protein arginine N-met 85.5 1.5 3.2E-05 45.0 5.3 22 254-275 178-199 (517)
209 PF01596 Methyltransf_3: O-met 83.6 1.9 4.1E-05 40.1 4.9 67 254-324 46-128 (205)
210 PLN02589 caffeoyl-CoA O-methyl 83.6 1.2 2.7E-05 42.6 3.7 20 254-273 80-99 (247)
211 KOG1269 SAM-dependent methyltr 82.7 0.75 1.6E-05 46.5 2.0 71 256-329 113-190 (364)
212 KOG2899 Predicted methyltransf 82.2 1.4 3E-05 43.2 3.5 41 255-297 60-101 (288)
213 PF09445 Methyltransf_15: RNA 81.8 1.9 4.2E-05 39.1 4.1 68 256-332 2-81 (163)
214 COG2521 Predicted archaeal met 81.6 1 2.2E-05 44.0 2.3 86 229-323 116-211 (287)
215 PF03492 Methyltransf_7: SAM d 77.7 1.6 3.5E-05 43.3 2.5 24 310-335 101-124 (334)
216 PRK11933 yebU rRNA (cytosine-C 77.4 6.1 0.00013 41.4 6.6 70 255-325 115-195 (470)
217 COG0421 SpeE Spermidine syntha 77.2 7 0.00015 38.3 6.7 44 253-297 76-119 (282)
218 TIGR03439 methyl_EasF probable 76.7 4.3 9.2E-05 40.4 5.1 54 233-297 66-123 (319)
219 PF07757 AdoMet_MTase: Predict 75.0 1.9 4.1E-05 37.2 1.8 26 255-280 60-85 (112)
220 KOG1501 Arginine N-methyltrans 74.7 4.8 0.0001 42.6 5.0 65 208-274 15-87 (636)
221 KOG2352 Predicted spermine/spe 74.3 8.5 0.00018 40.7 6.7 77 256-334 51-131 (482)
222 PF07091 FmrO: Ribosomal RNA m 73.8 3.3 7.2E-05 40.2 3.4 69 254-324 106-178 (251)
223 TIGR00308 TRM1 tRNA(guanine-26 73.6 2.1 4.6E-05 43.3 2.1 66 256-323 47-120 (374)
224 COG0357 GidB Predicted S-adeno 70.9 11 0.00025 35.6 6.2 69 255-326 69-144 (215)
225 PRK10742 putative methyltransf 68.8 9.1 0.0002 37.2 5.1 57 235-297 76-132 (250)
226 PF05971 Methyltransf_10: Prot 65.9 9.8 0.00021 37.8 4.8 92 229-324 81-184 (299)
227 COG3129 Predicted SAM-dependen 65.8 16 0.00035 35.9 6.1 77 216-295 41-119 (292)
228 COG0116 Predicted N6-adenine-s 63.9 21 0.00045 36.8 6.8 70 255-324 193-306 (381)
229 PF08123 DOT1: Histone methyla 63.3 9.8 0.00021 35.5 4.1 15 255-269 44-58 (205)
230 PF04816 DUF633: Family of unk 61.5 13 0.00029 34.5 4.6 65 257-325 1-74 (205)
231 PF03602 Cons_hypoth95: Conser 61.4 24 0.00053 32.1 6.2 23 255-277 44-66 (183)
232 COG3897 Predicted methyltransf 59.1 16 0.00035 34.9 4.7 72 255-331 81-156 (218)
233 COG2520 Predicted methyltransf 54.6 31 0.00068 34.9 6.2 97 214-324 158-263 (341)
234 PF04445 SAM_MT: Putative SAM- 54.1 11 0.00023 36.3 2.8 69 255-324 77-158 (234)
235 PF11968 DUF3321: Putative met 52.8 20 0.00043 34.3 4.3 18 314-332 101-118 (219)
236 PF12147 Methyltransf_20: Puta 51.9 22 0.00048 35.6 4.6 73 255-327 137-219 (311)
237 COG2384 Predicted SAM-dependen 50.9 67 0.0014 31.0 7.4 81 231-325 4-93 (226)
238 COG0742 N6-adenine-specific me 50.6 58 0.0013 30.4 6.8 23 255-277 45-67 (187)
239 PF12273 RCR: Chitin synthesis 48.8 10 0.00022 32.6 1.5 18 58-75 1-18 (130)
240 PF09125 COX2-transmemb: Cytoc 46.5 25 0.00054 25.0 2.9 21 57-77 14-34 (38)
241 PF14812 PBP1_TM: Transmembran 46.0 1.3 2.9E-05 36.1 -4.0 21 52-72 60-80 (81)
242 PRK00536 speE spermidine synth 45.8 47 0.001 32.3 5.7 57 232-296 56-112 (262)
243 COG1189 Predicted rRNA methyla 45.2 23 0.00051 34.4 3.5 34 254-287 80-116 (245)
244 KOG3115 Methyltransferase-like 40.1 16 0.00035 35.2 1.5 19 256-274 63-81 (249)
245 COG0293 FtsJ 23S rRNA methylas 39.1 51 0.0011 31.2 4.6 52 229-287 28-84 (205)
246 PRK14756 hypothetical protein; 39.0 37 0.0008 22.8 2.6 23 56-78 4-26 (29)
247 KOG3201 Uncharacterized conser 38.9 8.7 0.00019 35.9 -0.4 73 255-327 31-113 (201)
248 PF01564 Spermine_synth: Sperm 37.9 67 0.0015 30.5 5.4 42 253-296 76-118 (246)
249 COG1580 FliL Flagellar basal b 37.1 16 0.00035 33.1 1.0 35 51-85 8-42 (159)
250 COG4076 Predicted RNA methylas 37.1 27 0.00058 33.5 2.5 63 255-324 34-103 (252)
251 cd00315 Cyt_C5_DNA_methylase C 34.3 65 0.0014 30.9 4.7 71 256-331 2-76 (275)
252 COG0286 HsdM Type I restrictio 34.1 1.2E+02 0.0027 31.7 7.1 92 223-324 165-271 (489)
253 KOG2651 rRNA adenine N-6-methy 33.8 85 0.0019 33.0 5.6 32 253-284 153-185 (476)
254 TIGR00006 S-adenosyl-methyltra 32.7 91 0.002 31.1 5.5 59 230-297 5-63 (305)
255 PHA01634 hypothetical protein 32.3 68 0.0015 29.1 4.1 40 255-296 30-69 (156)
256 COG0144 Sun tRNA and rRNA cyto 31.1 2E+02 0.0044 28.8 7.8 69 255-323 158-235 (355)
257 COG4262 Predicted spermidine s 30.1 64 0.0014 33.8 4.0 42 253-295 289-330 (508)
258 PF01555 N6_N4_Mtase: DNA meth 28.5 1.7E+02 0.0038 25.5 6.1 39 255-296 193-231 (231)
259 COG1565 Uncharacterized conser 27.3 69 0.0015 33.0 3.7 72 211-290 42-121 (370)
260 KOG2793 Putative N2,N2-dimethy 26.1 70 0.0015 31.1 3.4 26 310-338 158-183 (248)
261 PF01234 NNMT_PNMT_TEMT: NNMT/ 25.2 1.3E+02 0.0028 29.3 5.0 19 309-327 145-168 (256)
262 PF01189 Nol1_Nop2_Fmu: NOL1/N 24.0 52 0.0011 31.8 2.1 68 255-323 87-162 (283)
263 PRK10310 PTS system galactitol 23.3 60 0.0013 26.4 2.0 34 293-326 26-59 (94)
264 KOG1709 Guanidinoacetate methy 21.7 2.8E+02 0.0061 27.3 6.4 82 231-323 88-175 (271)
265 TIGR00853 pts-lac PTS system, 21.5 87 0.0019 25.6 2.7 53 256-324 5-57 (95)
266 KOG2920 Predicted methyltransf 20.9 1E+02 0.0022 30.7 3.4 22 254-275 117-138 (282)
267 PF04672 Methyltransf_19: S-ad 20.9 92 0.002 30.6 3.1 13 253-265 68-80 (267)
268 COG1092 Predicted SAM-dependen 20.8 71 0.0015 33.0 2.4 66 255-323 219-296 (393)
269 KOG4589 Cell division protein 20.7 83 0.0018 30.2 2.6 20 255-274 71-90 (232)
270 PF07629 DUF1590: Protein of u 20.6 53 0.0012 22.2 1.0 18 157-174 5-23 (32)
271 PF07101 DUF1363: Protein of u 20.2 38 0.00083 29.0 0.3 11 257-267 6-16 (124)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.4e-65 Score=515.99 Aligned_cols=197 Identities=40% Similarity=0.805 Sum_probs=187.4
Q ss_pred CcccCcCchhhhhc--CCCCcceeccCCCC-CCCcccccCCCCCCCCCCCCCCccchhcccCCCchhHHhhhcccccccc
Q 019228 134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 210 (344)
Q Consensus 134 ~y~PC~d~~~~~~~--~~~~~~~~eRhCpp-~~r~~Clvp~P~~Y~~P~pWP~Srd~iW~~Nv~~~~~~~l~~~k~~q~W 210 (344)
|||||+|+++++++ ++++++|||||||+ +++++||||+|++||.|||||+|||+|||+||||++ |.++|..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999998 99999999999999 889999999999999999999999999999999998 5678899999
Q ss_pred cccccceeeecCCCccc-cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHH
Q 019228 211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (344)
Q Consensus 211 ~~~eg~~~~FpGggt~F-~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea 289 (344)
|.++|++|+|||||||| +|+++|||+|.++++... ..+++|++||||||+|+||++|++++|++|++++.|.+++
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999999 899999999999999721 1247899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCcccccc
Q 019228 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQ 337 (344)
Q Consensus 290 ~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~g~~ 337 (344)
|+|+|+|||+|++++++.+++||||+++||+|||++|+++|++++|+-
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~ 201 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFL 201 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccce
Confidence 999999999999999998999999999999999999999999999963
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=7.2e-14 Score=131.78 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=84.4
Q ss_pred cccchhhHHHHHHHHhccccCcccccCC--------CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228 226 IFDGVEDYSHQIAEMIGLRNESNFILAG--------VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 226 ~F~g~~~yId~I~e~Lpl~~g~~w~~~~--------ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
+|+.+...+|+++.+++++.+..|++.. ..+|||||||||.++..+++..- ...+.+.|+++.|++.|++|
T Consensus 16 vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 16 VFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREK 94 (238)
T ss_pred HHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHH
Confidence 5777888899999999988888887642 24899999999999999988732 34677789999999999988
Q ss_pred CCC-----eEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 298 GLP-----AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 298 Gvp-----a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
-.. +.+-..|+++|||||+|||+|+|+..|.+-.+
T Consensus 95 ~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d 134 (238)
T COG2226 95 LKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD 134 (238)
T ss_pred hhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence 433 22333468999999999999999998865553
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.34 E-value=7e-13 Score=123.84 Aligned_cols=108 Identities=17% Similarity=0.319 Sum_probs=51.3
Q ss_pred ccccchhhHHHHHHHHhccccCcccccCC--------CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 225 LIFDGVEDYSHQIAEMIGLRNESNFILAG--------VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 225 t~F~g~~~yId~I~e~Lpl~~g~~w~~~~--------ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
.||+.+...+|.++.+++++.+..|++.. ..+|||+|||||.++..|+++--....+.+.|+++.|++.|++
T Consensus 11 ~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~ 90 (233)
T PF01209_consen 11 KMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARK 90 (233)
T ss_dssp --------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHH
Confidence 47888899999999999988887787631 2489999999999999888752112256668899999988887
Q ss_pred c----CC-CeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 297 R----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 297 R----Gv-pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
+ +. .+.+-..|++.|||+|++||+|+|+..+.+..+
T Consensus 91 k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 91 KLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp HHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred HHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC
Confidence 6 22 333444568899999999999999988865543
No 4
>PRK05785 hypothetical protein; Provisional
Probab=99.30 E-value=3.4e-12 Score=118.01 Aligned_cols=101 Identities=14% Similarity=0.291 Sum_probs=72.2
Q ss_pred cccchhhHHHHHHHHhccccCccccc----------CCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228 226 IFDGVEDYSHQIAEMIGLRNESNFIL----------AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (344)
Q Consensus 226 ~F~g~~~yId~I~e~Lpl~~g~~w~~----------~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~ 295 (344)
+|+.+...+|.++..++++.+..|.+ ....+|||||||||.++..|+++. ...+.+.|++++|++.|.
T Consensus 14 ~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 14 AYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNL 91 (226)
T ss_pred HHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHH
Confidence 45555666666666555444433432 113589999999999999998872 125566899999999988
Q ss_pred HcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 296 eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
++. ....+ +++.+||++++||+|+|+.++.++.
T Consensus 92 ~~~-~~~~~--d~~~lp~~d~sfD~v~~~~~l~~~~ 124 (226)
T PRK05785 92 VAD-DKVVG--SFEALPFRDKSFDVVMSSFALHASD 124 (226)
T ss_pred hcc-ceEEe--chhhCCCCCCCEEEEEecChhhccC
Confidence 763 34444 4678999999999999999886554
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.16 E-value=5.3e-11 Score=112.13 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-------C-CeEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-------L-PAMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-------v-pa~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+|||||||||.++..|+++ +.. ..+.+.|++++|++.|+++. . .+.+-..|++.+||++++||+|+|+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 58999999999999888765 211 13456788888988887552 1 23333446789999999999999999
Q ss_pred cccccC
Q 019228 326 CGVDWD 331 (344)
Q Consensus 326 ~Li~W~ 331 (344)
++.++.
T Consensus 154 ~l~~~~ 159 (261)
T PLN02233 154 GLRNVV 159 (261)
T ss_pred ccccCC
Confidence 886664
No 6
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.15 E-value=4.4e-11 Score=110.02 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=71.5
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC-
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL- 311 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL- 311 (344)
++.|.++++.+ .+|||+|||.|.+.++|.+ ++|.+.. .+++++.+..+.++|+++++++++. .|
T Consensus 4 ~~~I~~~I~pg----------srVLDLGCGdG~LL~~L~~~k~v~g~G---vEid~~~v~~cv~rGv~Viq~Dld~-gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPG----------SRVLDLGCGDGELLAYLKDEKQVDGYG---VEIDPDNVAACVARGVSVIQGDLDE-GLA 69 (193)
T ss_pred HHHHHHHcCCC----------CEEEecCCCchHHHHHHHHhcCCeEEE---EecCHHHHHHHHHcCCCEEECCHHH-hHh
Confidence 45677877632 4799999999999999988 5776544 6788888999999999999999975 46
Q ss_pred CCCCCcccceEecccccccCccc
Q 019228 312 PYPSLSFDMLHCARCGVDWDQKG 334 (344)
Q Consensus 312 PFpD~SFDlVhcs~~Li~W~~~~ 334 (344)
.|+|+|||.|+++++|.+....+
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P~ 92 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRPD 92 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHHH
Confidence 59999999999999997765543
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.12 E-value=6.1e-11 Score=90.79 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=53.5
Q ss_pred EEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCCC--eEEeeccccCCCCCCCcccceEeccccccc
Q 019228 258 LDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 258 LDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
||+|||+|.++..|+++ +. ++.+.|.++++++.++++... ..+...+.+.+||++++||+|+|..++.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999998 43 556689999999999887432 224445678999999999999999999666
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.01 E-value=9.2e-10 Score=101.51 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=57.6
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC--CeEEeeccccCCCCCCCcccceEecccccccC
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
..+|||+|||+|.++..|++++. .+.+.|+++.+++.|+++.. .+..+ |.+.+||++++||+|+|+.++ +|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~--d~~~~~~~~~~fD~V~s~~~l-~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAG--DIESLPLATATFDLAWSNLAV-QWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEc--CcccCcCCCCcEEEEEECchh-hhc
Confidence 35799999999999999887753 44557889999999887753 33444 567899999999999998776 776
Q ss_pred c
Q 019228 332 Q 332 (344)
Q Consensus 332 ~ 332 (344)
.
T Consensus 117 ~ 117 (251)
T PRK10258 117 G 117 (251)
T ss_pred C
Confidence 4
No 9
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.00 E-value=8e-10 Score=101.05 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=58.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.+|||||||+|.++..|++.. ....+.+.|+++.+++.|+++. +.+..++ ... ||++++||+|+|..+++|+.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d--~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGS--LFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEee--ccC-CCCCCCEEEEEECChhhhCCH
Confidence 579999999999999988751 1125667899999999998753 4445554 445 999999999999999988864
Q ss_pred c
Q 019228 333 K 333 (344)
Q Consensus 333 ~ 333 (344)
.
T Consensus 121 ~ 121 (204)
T TIGR03587 121 D 121 (204)
T ss_pred H
Confidence 3
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.94 E-value=1.6e-09 Score=100.72 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=57.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.+|||||||+|.++..|+++.. ...+.+.|+++.|++.|+++++.+..++ ++.++ ++++||+|+|+.++ +|..
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d--~~~~~-~~~~fD~v~~~~~l-~~~~ 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGD--VRDWK-PKPDTDVVVSNAAL-QWVP 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcC--hhhCC-CCCCceEEEEehhh-hhCC
Confidence 5899999999999999987621 1245667899999999998888777765 45664 67899999999887 6654
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.88 E-value=4.7e-09 Score=99.07 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeecccc
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASK 309 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~ 309 (344)
..+.+.+.+.+.++ .+|||||||+|.++..|++.. ...+.+.|+++.+++.|+++.. .+.+...|..
T Consensus 40 ~~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~ 109 (263)
T PTZ00098 40 ATTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL 109 (263)
T ss_pred HHHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc
Confidence 35555566655432 579999999999998887641 1245567888899888887632 2333334566
Q ss_pred CCCCCCCcccceEecccccccCc
Q 019228 310 QLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 310 rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.+||++++||+|++..+++|+..
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCCH
Confidence 89999999999999988877753
No 12
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.87 E-value=5.9e-09 Score=98.19 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=54.9
Q ss_pred CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
.+|||||||+|.++..|++.. .....+.+.|+++.+++.|.++...+.+...|+..+||++++||+|++..+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 579999999999999887641 111245678999999999987754444444467789999999999998653
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.86 E-value=6.8e-09 Score=101.44 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=57.2
Q ss_pred CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEeccc
Q 019228 254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
..+|||||||+|.++..|+++ +. .+.+.|+++.|++.|.++ ++ .+.+...|+..+||++++||+|+|..+
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 358999999999999999885 33 334467777777766543 43 234444567889999999999999999
Q ss_pred ccccCc
Q 019228 327 GVDWDQ 332 (344)
Q Consensus 327 Li~W~~ 332 (344)
+.|+..
T Consensus 196 ~~h~~d 201 (340)
T PLN02244 196 GEHMPD 201 (340)
T ss_pred hhccCC
Confidence 877754
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.86 E-value=9.5e-10 Score=88.11 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=56.9
Q ss_pred EEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEeccc-ccc
Q 019228 257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC-GVD 329 (344)
Q Consensus 257 VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~~-Li~ 329 (344)
|||+|||+|..+..+.+.- .....+.+.|+++++++.++++. +++.+-..|.+.+|+.+++||+|+|+.+ +.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998887652 01135667899999999888764 5555555677899999999999999766 544
Q ss_pred cCcccccccc
Q 019228 330 WDQKGKCQKF 339 (344)
Q Consensus 330 W~~~~g~~~~ 339 (344)
..++.+.++
T Consensus 81 -~~~~~~~~l 89 (101)
T PF13649_consen 81 -LSPEELEAL 89 (101)
T ss_dssp -SSHHHHHHH
T ss_pred -CCHHHHHHH
Confidence 554444443
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.84 E-value=5.2e-09 Score=94.87 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|||+|||+|.++..|++..-....+.+.|+++.+++.|.++ +++ +.+...|...+||++++||+|++..++.+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN 126 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccccc
Confidence 5899999999999998887510111345567777887776654 222 22333356789999999999999876633
No 16
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=95.18 Aligned_cols=90 Identities=24% Similarity=0.372 Sum_probs=68.9
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCC--eEEeeccccC
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQ 310 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~r 310 (344)
..+.-.+++.+..+ ..+-|||||||+|.-+..|.+.+- -..+.|+++.|++.|.++.+. .++++|. +-
T Consensus 36 m~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~G 105 (270)
T KOG1541|consen 36 MAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EG 105 (270)
T ss_pred HHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CC
Confidence 34455566665432 346899999999999999988763 234578888888888887654 5778885 89
Q ss_pred CCCCCCcccceEecccccccCcc
Q 019228 311 LPYPSLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 311 LPFpD~SFDlVhcs~~Li~W~~~ 333 (344)
|||+.++||.|++..++ +|.=|
T Consensus 106 lpfrpGtFDg~ISISAv-QWLcn 127 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAV-QWLCN 127 (270)
T ss_pred CCCCCCccceEEEeeee-eeecc
Confidence 99999999999999877 88643
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.76 E-value=3.5e-08 Score=87.68 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=65.7
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF 306 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l 306 (344)
..|.+.+.+.+.+..+ .+|||+|||+|.++..++++-.....+.+.|.++.+++.|+++ .....+...
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 5 RRYRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence 4566667777665432 5899999999999998877521112445577888888877765 122333344
Q ss_pred cccCCCCCCCcccceEecccccccCc
Q 019228 307 ASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 307 da~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
|...+|+++++||+|++..++.++..
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccCC
Confidence 56788999999999999988866543
No 18
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.75 E-value=2.6e-08 Score=88.98 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=61.5
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC-
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL- 311 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL- 311 (344)
++.+.+.++. ..+|||||||+|.++..|++. ++. +.+.|+++++++.|.++++.+..+++. +.+
T Consensus 4 ~~~i~~~i~~----------~~~iLDiGcG~G~~~~~l~~~~~~~---~~giD~s~~~i~~a~~~~~~~~~~d~~-~~l~ 69 (194)
T TIGR02081 4 LESILNLIPP----------GSRVLDLGCGDGELLALLRDEKQVR---GYGIEIDQDGVLACVARGVNVIQGDLD-EGLE 69 (194)
T ss_pred HHHHHHhcCC----------CCEEEEeCCCCCHHHHHHHhccCCc---EEEEeCCHHHHHHHHHcCCeEEEEEhh-hccc
Confidence 4556666542 147999999999999888764 332 245688889998888888887777653 235
Q ss_pred CCCCCcccceEeccccccc
Q 019228 312 PYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 312 PFpD~SFDlVhcs~~Li~W 330 (344)
++++++||+|+|+.++.+-
T Consensus 70 ~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 70 AFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred ccCCCCcCEEEEhhHhHcC
Confidence 5889999999999988443
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.75 E-value=8.6e-09 Score=99.07 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=76.6
Q ss_pred ccccchhhHHHHHHHHhccccCcccccC--------CCCeEEEECCccchhhHHHhhC--C---ceEEEcccccccHHHH
Q 019228 225 LIFDGVEDYSHQIAEMIGLRNESNFILA--------GVRTILDIGCGYGSFGAHLFSK--E---LLTMCIANYEASGSQV 291 (344)
Q Consensus 225 t~F~g~~~yId~I~e~Lpl~~g~~w~~~--------~ir~VLDVGCGtGsfaa~Laer--~---V~~~sIa~~D~sea~I 291 (344)
..|..++.++|.+++++.++.++-|..- ..-++|||+||||..|..+.+. . -....+...|+++.|+
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 3577889999999999998877667421 1238999999999999888764 1 0001223346666666
Q ss_pred HHHHHc----CCC----eEEeeccccCCCCCCCcccceEecccccccCcc
Q 019228 292 QLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 292 q~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~ 333 (344)
..+++| ++. ..+-..||+.|||||++||+.+.+..+=+|+.-
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~ 193 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHI 193 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCH
Confidence 555444 332 233334799999999999999999888888753
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.73 E-value=2.2e-08 Score=84.02 Aligned_cols=86 Identities=23% Similarity=0.468 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccC
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ 310 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~r 310 (344)
..+.+.+.++.+... ...+|||||||+|.++..|++.+. .+.+.|+++.+++. +.+. ....+...
T Consensus 7 ~~~~~~~~~~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~--~~~~~~~~ 71 (161)
T PF13489_consen 7 RAYADLLERLLPRLK-------PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVV--FDNFDAQD 71 (161)
T ss_dssp HCHHHHHHHHHTCTT-------TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSE--EEEEECHT
T ss_pred HHHHHHHHHHhcccC-------CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhh--hhhhhhhh
Confidence 445667777775211 235899999999999999988865 55667888887665 2222 22223457
Q ss_pred CCCCCCcccceEecccccccCc
Q 019228 311 LPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 311 LPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.++++++||+|+|..++ +|.+
T Consensus 72 ~~~~~~~fD~i~~~~~l-~~~~ 92 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVL-EHLP 92 (161)
T ss_dssp HHCHSSSEEEEEEESSG-GGSS
T ss_pred hhccccchhhHhhHHHH-hhcc
Confidence 78899999999999888 5554
No 21
>PRK06202 hypothetical protein; Provisional
Probab=98.72 E-value=3.7e-08 Score=90.18 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=56.7
Q ss_pred CCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEecc
Q 019228 254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
..+|||+|||+|.++..|++. +. ...+.+.|+++.+++.|+++. +.+... ++..+|+++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQA--VSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEE--ecccccccCCCccEEEECC
Confidence 358999999999998887642 22 135667899999999887762 333443 4567888999999999999
Q ss_pred cccccCc
Q 019228 326 CGVDWDQ 332 (344)
Q Consensus 326 ~Li~W~~ 332 (344)
+++|..+
T Consensus 138 ~lhh~~d 144 (232)
T PRK06202 138 FLHHLDD 144 (232)
T ss_pred eeecCCh
Confidence 9866544
No 22
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.68 E-value=4.5e-08 Score=88.21 Aligned_cols=74 Identities=27% Similarity=0.347 Sum_probs=55.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
.+|||||||+|.++..|++++. .+.+.|+++.+++.|+++ ++ .+.+... .+++.+++||+|+|..+++
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVG---DLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---CchhccCCcCEEEEcchhh
Confidence 5899999999999999988764 356678888888887765 22 1222222 3677789999999999998
Q ss_pred ccCccc
Q 019228 329 DWDQKG 334 (344)
Q Consensus 329 ~W~~~~ 334 (344)
+|...+
T Consensus 139 ~~~~~~ 144 (230)
T PRK07580 139 HYPQED 144 (230)
T ss_pred cCCHHH
Confidence 886543
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.67 E-value=4.8e-08 Score=88.25 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=50.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|||+|||+|.++.+|++++. .+.+.|+++.+++.|++ .++. +.....|...++++ ++||+|+|+.++++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 4799999999999999999854 34556788877776554 2443 22222344566774 67999999988744
Q ss_pred cC
Q 019228 330 WD 331 (344)
Q Consensus 330 W~ 331 (344)
+.
T Consensus 108 ~~ 109 (197)
T PRK11207 108 LE 109 (197)
T ss_pred CC
Confidence 33
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.65 E-value=6.5e-08 Score=89.44 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=53.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.+|||||||+|.++..|+++.- ...+.+.|+++.+++.|.++...+.+...|...++ ++++||+|+|+.++ +|..
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~ 107 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-QWLP 107 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-hhCC
Confidence 5899999999999999887521 12445578888999988876322323333444554 56799999999887 6664
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.65 E-value=1.8e-08 Score=98.70 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=57.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----C--CeEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----v--pa~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
.+|||||||+|.++..|++.+. .+.+.|.++.+++.|+++. . .+.+...+++.+|+++++||+|+|..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4899999999999999988754 3455788888888887541 1 22233335678999999999999999997
Q ss_pred ccCc
Q 019228 329 DWDQ 332 (344)
Q Consensus 329 ~W~~ 332 (344)
|...
T Consensus 210 Hv~d 213 (322)
T PLN02396 210 HVAN 213 (322)
T ss_pred hcCC
Confidence 7754
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.64 E-value=4.7e-08 Score=88.63 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----C--CeEEe
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIG 304 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----v--pa~~~ 304 (344)
+.+.+.+.+.++... ....+|||+|||+|.++..|++.+. .+.+.|+++.+++.|+++. . .+.+.
T Consensus 39 ~~~~~~~~~~l~~~~------~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~ 109 (219)
T TIGR02021 39 AAMRRKLLDWLPKDP------LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109 (219)
T ss_pred HHHHHHHHHHHhcCC------CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 444555666655200 1235899999999999999988754 4456788888888877652 2 23333
Q ss_pred eccccCCCCCCCcccceEecccccccCcc
Q 019228 305 SFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 305 ~lda~rLPFpD~SFDlVhcs~~Li~W~~~ 333 (344)
..|...++ ++||+|++..+++++...
T Consensus 110 ~~d~~~~~---~~fD~ii~~~~l~~~~~~ 135 (219)
T TIGR02021 110 VNDLLSLC---GEFDIVVCMDVLIHYPAS 135 (219)
T ss_pred ECChhhCC---CCcCEEEEhhHHHhCCHH
Confidence 33455555 899999999998787553
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.64 E-value=4e-08 Score=84.14 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=53.9
Q ss_pred CeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs~~ 326 (344)
.+|||+|||+|.++..|++ .+- ...+.+.|.++.+++.|.++ +++ +.+...|..+++ |+ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 4899999999999999984 311 11356678999999888773 454 444444566788 88 99999999988
Q ss_pred ccccC
Q 019228 327 GVDWD 331 (344)
Q Consensus 327 Li~W~ 331 (344)
+++..
T Consensus 83 l~~~~ 87 (152)
T PF13847_consen 83 LHHFP 87 (152)
T ss_dssp GGGTS
T ss_pred hhhcc
Confidence 84444
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.60 E-value=1.2e-07 Score=92.44 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=57.8
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH--HHHc----CCCeEEeecc
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER----GLPAMIGSFA 307 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~--A~eR----Gvpa~~~~ld 307 (344)
.+.+...++.-. .++|||||||+|.++..|++.+.. .+.+.|.++.++.. +.++ ...+.+-..+
T Consensus 111 ~~~l~~~l~~l~--------g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 111 WDRVLPHLSPLK--------GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred HHHHHHhhCCCC--------CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 455666665222 268999999999999999887532 23445666655532 2222 1233444446
Q ss_pred ccCCCCCCCcccceEecccccccC
Q 019228 308 SKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 308 a~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
.+.+|+ +++||+|+|..+++|+.
T Consensus 181 ~e~lp~-~~~FD~V~s~~vl~H~~ 203 (322)
T PRK15068 181 IEQLPA-LKAFDTVFSMGVLYHRR 203 (322)
T ss_pred HHHCCC-cCCcCEEEECChhhccC
Confidence 678999 89999999999987764
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.60 E-value=1.2e-07 Score=85.57 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=51.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.+|||+|||+|.++.+|++++. .+.+.|+++.+++.+.+ .++++.....+...++++ ++||+|+|+.++++.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 4799999999999999998753 34556777777765543 355533333344456665 689999999887544
Q ss_pred C
Q 019228 331 D 331 (344)
Q Consensus 331 ~ 331 (344)
+
T Consensus 108 ~ 108 (195)
T TIGR00477 108 Q 108 (195)
T ss_pred C
Confidence 3
No 30
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.60 E-value=1e-07 Score=93.26 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=53.7
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC----------CeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----------PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv----------pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||||||+|.++..|++++. .+.+.|+++.|++.|+++.- ...+... .++..+++||+|+|.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l~~~fD~Vv~~ 219 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN---DLESLSGKYDTVTCL 219 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc---chhhcCCCcCEEEEc
Confidence 4899999999999999998864 45567888888888876621 1222222 344447899999999
Q ss_pred ccccccCcc
Q 019228 325 RCGVDWDQK 333 (344)
Q Consensus 325 ~~Li~W~~~ 333 (344)
.+++|+...
T Consensus 220 ~vL~H~p~~ 228 (315)
T PLN02585 220 DVLIHYPQD 228 (315)
T ss_pred CEEEecCHH
Confidence 999887654
No 31
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.59 E-value=2.4e-08 Score=94.77 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=59.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.+|||||||.|.++..|++.|. .+.+.|+++.+|+.|+.+ ++.+.+....++.|-...++||+|+|..++.|-
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4799999999999999999874 456678888888877744 444333334466777777999999999999887
Q ss_pred Cccc
Q 019228 331 DQKG 334 (344)
Q Consensus 331 ~~~~ 334 (344)
...+
T Consensus 138 ~dp~ 141 (243)
T COG2227 138 PDPE 141 (243)
T ss_pred CCHH
Confidence 6654
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.59 E-value=1.3e-07 Score=95.32 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=56.8
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc--CC--CeEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER--GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR--Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|||||||+|.++..|+++ +. .+.+.|+++.+++.|+++ +. .+.+...|...+||++++||+|+|..++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 58999999999999888875 32 455678888888887664 22 233434456788999999999999998877
Q ss_pred cCc
Q 019228 330 WDQ 332 (344)
Q Consensus 330 W~~ 332 (344)
+..
T Consensus 345 ~~d 347 (475)
T PLN02336 345 IQD 347 (475)
T ss_pred cCC
Confidence 653
No 33
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.55 E-value=7.9e-08 Score=91.18 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred CeEEEECCccch----hhHHHhhCCc----eEEEcccccccHHHHHHHHHcC--------CC------------------
Q 019228 255 RTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------LP------------------ 300 (344)
Q Consensus 255 r~VLDVGCGtGs----faa~Laer~V----~~~sIa~~D~sea~Iq~A~eRG--------vp------------------ 300 (344)
.+|||+|||||. ++..|++... ....|.+.|+++.+++.|++.- +|
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 479999999994 6666665421 1346778899999999887631 11
Q ss_pred ------eEEeeccccCCCCCCCcccceEecccccccCccc
Q 019228 301 ------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKG 334 (344)
Q Consensus 301 ------a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~ 334 (344)
+.+...|...+|+++++||+|+|..+++++...+
T Consensus 181 ~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~ 220 (264)
T smart00138 181 PELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT 220 (264)
T ss_pred hHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH
Confidence 2233345567888899999999999998886543
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=1.3e-07 Score=88.19 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=53.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCC-CCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL-PYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rL-PFpD~SFDlVhcs~~L 327 (344)
.+|||+|||+|.++..|++++. .+.+.|+++.+++.|+++ ++. +.+...+.+.+ ++++++||+|+|..++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 5899999999999999998864 345578888888877764 331 22222244555 4788999999999988
Q ss_pred ccc
Q 019228 328 VDW 330 (344)
Q Consensus 328 i~W 330 (344)
.+.
T Consensus 123 ~~~ 125 (255)
T PRK11036 123 EWV 125 (255)
T ss_pred Hhh
Confidence 544
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.55 E-value=1.1e-07 Score=84.87 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=55.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
.+|||+|||+|.++..|++.... ..+.+.|.++.+++.+.++. +....+ |...+|+++++||+|+|..++ +|.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~fD~vi~~~~l-~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICG--DAEKLPLEDSSFDLIVSNLAL-QWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEec--chhhCCCCCCceeEEEEhhhh-hhc
Confidence 57999999999999999886421 23456788888888877663 334444 456889999999999999887 555
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.50 E-value=1.6e-07 Score=75.15 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=47.9
Q ss_pred CeEEEECCccchhhHHHhh--CCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEecc-
Q 019228 255 RTILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCAR- 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~- 325 (344)
.+|||+|||+|.++..|++ .+.. +.+.|.++.+++.|+++- -.+.+-..|....+-..+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 4799999999999999998 5543 445677888887776652 123332223312233344599999998
Q ss_pred cccccC
Q 019228 326 CGVDWD 331 (344)
Q Consensus 326 ~Li~W~ 331 (344)
++..+.
T Consensus 80 ~~~~~~ 85 (112)
T PF12847_consen 80 TLHFLL 85 (112)
T ss_dssp SGGGCC
T ss_pred cccccc
Confidence 543343
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.49 E-value=2.1e-07 Score=93.87 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----CCeEEeeccc
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFAS 308 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~~~lda 308 (344)
...+.+.++... ..+|||||||+|.++..|+++.. .+.+.|.++.+++.+.++. +.+..+++..
T Consensus 26 ~~~il~~l~~~~--------~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 26 RPEILSLLPPYE--------GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTS 94 (475)
T ss_pred hhHHHhhcCccC--------CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccc
Confidence 345566665322 24899999999999999988742 3455678888887765432 3345555544
Q ss_pred cCCCCCCCcccceEecccccccCc
Q 019228 309 KQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 309 ~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
..+||++++||+|+|..++.++..
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~l~~ 118 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMYLSD 118 (475)
T ss_pred cccCCCCCCEEEEehhhhHHhCCH
Confidence 568999999999999998865543
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.44 E-value=5.6e-07 Score=88.11 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=50.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH--Hc--C--CCeEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER--G--LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~--eR--G--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
++|||||||+|.++..++..+.. .+.+.|.++.|+..+. ++ + ..+.+-.++.+.+|+. ++||+|+|+.+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 68999999999999888877542 2345666666654321 11 1 1233333456678875 4899999999998
Q ss_pred ccCc
Q 019228 329 DWDQ 332 (344)
Q Consensus 329 ~W~~ 332 (344)
|+..
T Consensus 200 H~~d 203 (314)
T TIGR00452 200 HRKS 203 (314)
T ss_pred ccCC
Confidence 8754
No 39
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.44 E-value=5.2e-07 Score=80.06 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=52.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|||+|||+|.++..+++.......+.+.|+++.+++.+.++.. .+.+...+...+|+++++||+|++...+.+
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 589999999999999888763211244557788888777766531 122223345678899999999999876644
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.43 E-value=4.5e-07 Score=86.37 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=51.0
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.+|||+|||+|.++.+|++++. .+.+.|.++.+++.+++ .++.+.....|....++ +++||+|+|..++.+.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 4799999999999999998764 44556888877766543 35544333334444554 7899999999887543
No 41
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.40 E-value=6.3e-07 Score=88.79 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=56.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.+|||||||+|.++..++++. ....+...|.++.|++.|+++ ++.+..+ |.+.+||++++||+|++..++.+|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~g--D~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEG--DAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEec--cHHhCCCCCCceeEEEEcChhhhC
Confidence 479999999999888877641 012345578888888887765 3444444 567899999999999999888777
Q ss_pred Ccc
Q 019228 331 DQK 333 (344)
Q Consensus 331 ~~~ 333 (344)
.+.
T Consensus 192 ~d~ 194 (340)
T PLN02490 192 PDP 194 (340)
T ss_pred CCH
Confidence 643
No 42
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.39 E-value=7.2e-08 Score=91.83 Aligned_cols=85 Identities=26% Similarity=0.330 Sum_probs=59.9
Q ss_pred HHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeecccc-CCC-C
Q 019228 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-Y 313 (344)
Q Consensus 236 ~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~-rLP-F 313 (344)
++.+||...+. +..+++||+|||||.++..|.++- -.+++.|+|++|++.|.|+|+--.+...++. =++ .
T Consensus 113 ~l~emI~~~~~-----g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~ 184 (287)
T COG4976 113 LLAEMIGKADL-----GPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDL 184 (287)
T ss_pred HHHHHHHhccC-----CccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhc
Confidence 45666653222 235799999999999999988762 2456789999999999999864222222222 123 4
Q ss_pred CCCcccceEeccccc
Q 019228 314 PSLSFDMLHCARCGV 328 (344)
Q Consensus 314 pD~SFDlVhcs~~Li 328 (344)
.++.||+|.+..++.
T Consensus 185 ~~er~DLi~AaDVl~ 199 (287)
T COG4976 185 TQERFDLIVAADVLP 199 (287)
T ss_pred cCCcccchhhhhHHH
Confidence 578899999999984
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.38 E-value=1.3e-06 Score=78.35 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=54.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
.+|||+|||+|.++..++........+.+.|.++.+++.+.++- ..+.+...+...+|+++++||+|+++.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 47999999999999888775310124555777887777776641 123344446677889899999999988875
Q ss_pred ccC
Q 019228 329 DWD 331 (344)
Q Consensus 329 ~W~ 331 (344)
++.
T Consensus 133 ~~~ 135 (239)
T PRK00216 133 NVP 135 (239)
T ss_pred cCC
Confidence 554
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.33 E-value=5.6e-07 Score=82.80 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=51.8
Q ss_pred CeEEEECCccchhhHHHhhCC-ceEEEcccccccHHHHHHHHHc----C--CCeEEeeccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~-V~~~sIa~~D~sea~Iq~A~eR----G--vpa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+|||||||+|.++..++++- -....+.+.|+++.|++.|+++ + ..+.+...|...+|+++ +|+|+|..++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecch
Confidence 479999999999998887641 0112455678888888887664 1 12333334566788764 8999999888
Q ss_pred cccCc
Q 019228 328 VDWDQ 332 (344)
Q Consensus 328 i~W~~ 332 (344)
+++..
T Consensus 133 ~~~~~ 137 (239)
T TIGR00740 133 QFLPP 137 (239)
T ss_pred hhCCH
Confidence 55543
No 45
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.33 E-value=9.1e-07 Score=82.44 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=50.4
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+|||||||+|.++..|++. .-....+.+.|.++.|++.|+++ +. .+.+...+...+|+++ ||+|+|..++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence 57999999999998877662 00112455678888888887765 22 2333333456777764 8999999887
Q ss_pred cccC
Q 019228 328 VDWD 331 (344)
Q Consensus 328 i~W~ 331 (344)
++..
T Consensus 136 ~~l~ 139 (247)
T PRK15451 136 QFLE 139 (247)
T ss_pred HhCC
Confidence 5443
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.31 E-value=1.5e-06 Score=85.37 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHhc-cccCcccccCCCCeEEEECCccchhhHHHhhCCce-EEEcccccccHHHHHHHHHc-C--CCeEEeeccc
Q 019228 234 SHQIAEMIG-LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER-G--LPAMIGSFAS 308 (344)
Q Consensus 234 Id~I~e~Lp-l~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~-~~sIa~~D~sea~Iq~A~eR-G--vpa~~~~lda 308 (344)
-+.+..+++ +. .++|||||||.|.++.+|+.++.. ++.|.+....-.|-+++.+- | .....-.+..
T Consensus 104 W~rl~p~l~~L~---------gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv 174 (315)
T PF08003_consen 104 WDRLLPHLPDLK---------GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV 174 (315)
T ss_pred HHHHHhhhCCcC---------CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch
Confidence 455666664 32 368999999999999999998653 45665555544443333321 2 2223333457
Q ss_pred cCCCCCCCcccceEeccccccc
Q 019228 309 KQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 309 ~rLPFpD~SFDlVhcs~~Li~W 330 (344)
+.||. .++||+|+|..+|+|=
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHr 195 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHR 195 (315)
T ss_pred hhccc-cCCcCEEEEeeehhcc
Confidence 88998 8999999999999873
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.31 E-value=1.8e-07 Score=74.23 Aligned_cols=72 Identities=26% Similarity=0.271 Sum_probs=34.8
Q ss_pred EEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C-CCeEEeeccccCC--CCCCCcccceEeccccccc
Q 019228 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL--PYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 258 LDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G-vpa~~~~lda~rL--PFpD~SFDlVhcs~~Li~W 330 (344)
||||||+|.++..++++. ....+.+.|+++.+++.|++| + .......+....+ +.+.++||+|++..+++++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 899999999999988762 122444556666665444433 2 1122222222222 1223699999999998665
No 48
>PRK06922 hypothetical protein; Provisional
Probab=98.30 E-value=9.9e-07 Score=93.99 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC--CCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP--FpD~SFDlVhcs~~Li 328 (344)
.+|||||||+|.++..|+++. ....+.+.|+++.|++.|+++ +..+.+-..|...+| |++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 589999999999988887642 122455678888888887764 233333223456788 8999999999998887
Q ss_pred ccC
Q 019228 329 DWD 331 (344)
Q Consensus 329 ~W~ 331 (344)
+|.
T Consensus 499 ~L~ 501 (677)
T PRK06922 499 ELF 501 (677)
T ss_pred hhh
Confidence 664
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.30 E-value=8e-07 Score=82.53 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=53.5
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--C---CCeEEeeccccCCCCCCCcccceEecccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--G---LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--G---vpa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
..+.+||+|||.|.|+..|+.+. -.+...|+++..++.|++| + +.+.++++ .. ..|+++||+|+++.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv--p~-~~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADV--PE-FWPEGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T--TT----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC--CC-CCCCCCeeEEEEehHh
Confidence 34689999999999999999983 1445578888888999887 2 22334433 22 4689999999999999
Q ss_pred cccCcccccccc
Q 019228 328 VDWDQKGKCQKF 339 (344)
Q Consensus 328 i~W~~~~g~~~~ 339 (344)
+.+.+.+-++.+
T Consensus 117 YYL~~~~~L~~~ 128 (201)
T PF05401_consen 117 YYLDDAEDLRAA 128 (201)
T ss_dssp GGSSSHHHHHHH
T ss_pred HcCCCHHHHHHH
Confidence 998876555444
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.27 E-value=1.9e-06 Score=80.69 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=50.7
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
.+|||||||+|.++..++.. +.. ..+.+.|.++.+++.|+++ +++ +.+...+.+.+||++++||+|++..++.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 58999999999877655543 211 1344567788888877764 332 2232335678999999999999986664
Q ss_pred cc
Q 019228 329 DW 330 (344)
Q Consensus 329 ~W 330 (344)
++
T Consensus 158 ~~ 159 (272)
T PRK11873 158 LS 159 (272)
T ss_pred CC
Confidence 33
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.25 E-value=4.1e-06 Score=76.15 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=53.7
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeec
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSF 306 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~l 306 (344)
.+..+.+.+....+ .+|||||||+|.+++.|++.--..-.+.+.|.++++++.|+++ ++. +.+-..
T Consensus 60 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 60 MVAMMCELIEPRPG--------MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 35556666654332 5799999999999988876410001234467777776666542 432 333333
Q ss_pred cccCCCCCCCcccceEecccc
Q 019228 307 ASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 307 da~rLPFpD~SFDlVhcs~~L 327 (344)
|....+.++.+||+|++..++
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CcccCCccCCCccEEEEccCc
Confidence 455555567899999998765
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.24 E-value=2.4e-06 Score=85.50 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=58.4
Q ss_pred hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC--CCeEEeeccc
Q 019228 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS 308 (344)
Q Consensus 232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda 308 (344)
..++.|.+.+.++++ .+|||||||+|.++.+++++ ++ .+.+.|++++|++.|.++. +.+.+...|.
T Consensus 154 ~k~~~l~~~l~l~~g--------~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~ 222 (383)
T PRK11705 154 AKLDLICRKLQLKPG--------MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence 346666666655433 58999999999999999875 43 4556788999999888763 3333332344
Q ss_pred cCCCCCCCcccceEecccccc
Q 019228 309 KQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 309 ~rLPFpD~SFDlVhcs~~Li~ 329 (344)
+.+ +++||.|+|..++.+
T Consensus 223 ~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred hhc---CCCCCEEEEeCchhh
Confidence 443 579999999877644
No 53
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=81.93 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
..+.|.|+|||+|..+..|+++=-. ..|.+.|.|.+|++.|++|.+.+.+...|.+.. -|+..+|+++++.++ ||.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhcc
Confidence 3578999999999999999998211 145678999999999998877665533333333 478899999999887 9988
Q ss_pred ccc
Q 019228 333 KGK 335 (344)
Q Consensus 333 ~~g 335 (344)
+.+
T Consensus 107 dH~ 109 (257)
T COG4106 107 DHP 109 (257)
T ss_pred ccH
Confidence 765
No 54
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=82.75 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=50.6
Q ss_pred CCeEEEECCccchhhHHHhh-C--CceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCC--CCcccceE
Q 019228 254 VRTILDIGCGYGSFGAHLFS-K--ELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYP--SLSFDMLH 322 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Lae-r--~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFp--D~SFDlVh 322 (344)
-+.++|||||+| .+++.++ . +|+ +.|++++|+++|.+.- .|.... +.+-.++- ++|.|+|+
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~~k~VI-----atD~s~~mL~~a~k~~~~~y~~t~~~ms--~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEHYKEVI-----ATDVSEAMLKVAKKHPPVTYCHTPSTMS--SDEMVDLLGGEESVDLIT 105 (261)
T ss_pred cceEEEeccCCC-cchHHHHHhhhhhe-----eecCCHHHHHHhhcCCCcccccCCcccc--ccccccccCCCcceeeeh
Confidence 458999999999 6665544 3 554 3689999999987652 222122 23445666 99999999
Q ss_pred ecccccccCcc
Q 019228 323 CARCGVDWDQK 333 (344)
Q Consensus 323 cs~~Li~W~~~ 333 (344)
|++|+ ||...
T Consensus 106 ~Aqa~-HWFdl 115 (261)
T KOG3010|consen 106 AAQAV-HWFDL 115 (261)
T ss_pred hhhhH-Hhhch
Confidence 99999 88764
No 55
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.18 E-value=6.2e-06 Score=72.37 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--C-CeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--L-PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--v-pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..+++++. .+.+.|.++.+++.++++- . .+.+-..|+.++++++..||.|+++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence 4799999999999999998742 3445677777777776552 1 2223334577889999899999885
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.18 E-value=2.8e-06 Score=81.48 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=49.9
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCC--eEEee
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLP--AMIGS 305 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~~ 305 (344)
.++.+.+.+.+++| .+|||||||-|.++.+++++ ++.+. +..++++|++.|++ +|++ +.+-.
T Consensus 50 k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~g~~v~---gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 50 KLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERYGCHVT---GITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH--EEE---EEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHcCcEEE---EEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 35555665555543 58999999999999999998 66443 34567778776654 4654 33333
Q ss_pred ccccCCCCCCCcccceEeccccccc
Q 019228 306 FASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 306 lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.|-..++. +||.|+|..++-|-
T Consensus 119 ~D~~~~~~---~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 119 QDYRDLPG---KFDRIVSIEMFEHV 140 (273)
T ss_dssp S-GGG------S-SEEEEESEGGGT
T ss_pred eeccccCC---CCCEEEEEechhhc
Confidence 34445544 99999999887554
No 57
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.17 E-value=7.1e-06 Score=75.18 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeecc
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFA 307 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~ld 307 (344)
.+..+.+.+.+..+ .+|||||||+|.+++.|++.--..-.+...|.++.+++.|+++ ++. +.+-..|
T Consensus 64 ~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 64 MVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred HHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 34556666655433 5899999999999988876410001334466777777766653 332 3333334
Q ss_pred ccCCCCCCCcccceEecccc
Q 019228 308 SKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 308 a~rLPFpD~SFDlVhcs~~L 327 (344)
+...+++++.||+|++..+.
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred cccCCCcCCCcCEEEECCCc
Confidence 55566678999999997654
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=4.8e-06 Score=80.96 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=63.2
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCCeEEee
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLPAMIGS 305 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~ 305 (344)
..-++.+.+.+.+++| .++||||||=|.++.+++++ +|.++. .++|++|...+++ +|+...+.+
T Consensus 58 ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y~v~V~G---vTlS~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 58 RAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEYGVTVVG---VTLSEEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHcCCEEEE---eeCCHHHHHHHHHHHHHcCCCcccEE
Confidence 3447888888888765 68999999999999999987 665444 5677777665554 466522211
Q ss_pred ccccCCCCCCCcccceEecccccccC
Q 019228 306 FASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 306 lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
-.+..+..++.||-|++...+-|..
T Consensus 127 -~l~d~rd~~e~fDrIvSvgmfEhvg 151 (283)
T COG2230 127 -RLQDYRDFEEPFDRIVSVGMFEHVG 151 (283)
T ss_pred -EeccccccccccceeeehhhHHHhC
Confidence 1345666777799999998775543
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.16 E-value=3e-06 Score=76.58 Aligned_cols=73 Identities=29% Similarity=0.431 Sum_probs=49.2
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccccc
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
+|||||||+|.++..+++..- ...+.+.|+++.+++.|.++ ++. +.+...|..+.|+++ +||+|++..++.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCCEeehHHHHHh
Confidence 699999999999998887520 01344567788888777664 332 222223444567764 8999999988865
Q ss_pred c
Q 019228 330 W 330 (344)
Q Consensus 330 W 330 (344)
.
T Consensus 80 ~ 80 (224)
T smart00828 80 I 80 (224)
T ss_pred C
Confidence 5
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.14 E-value=1.3e-05 Score=73.98 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=46.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHH----HHHHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I----q~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.++||+|||.|--+.+|+++|..+.. .|.++..+ +.|.++++++.....|.....++ +.||+|+|+-++..-
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtA---vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTA---VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEE---EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEE---EECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 58999999999999999999754333 34444333 35666788765554455556665 689999997666444
Q ss_pred C
Q 019228 331 D 331 (344)
Q Consensus 331 ~ 331 (344)
.
T Consensus 108 ~ 108 (192)
T PF03848_consen 108 Q 108 (192)
T ss_dssp -
T ss_pred C
Confidence 3
No 61
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.13 E-value=1.4e-06 Score=84.18 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=50.0
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEe---------eccccCCCCCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIG---------SFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~---------~lda~rLPFpD~SFDlVhc 323 (344)
+.|||||||+|-++..|+..+. ++++.|+++++|+.|.+.- -|..-+ +.+.+.+ .+.||+|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 5799999999999999999875 4566899999999998762 111111 1112222 233999999
Q ss_pred ccccccc
Q 019228 324 ARCGVDW 330 (344)
Q Consensus 324 s~~Li~W 330 (344)
+.++.|-
T Consensus 165 sevleHV 171 (282)
T KOG1270|consen 165 SEVLEHV 171 (282)
T ss_pred HHHHHHH
Confidence 9999775
No 62
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=2.3e-06 Score=81.94 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
...++|||||.|....+|+.++|. .+...|.+..|++.++.. ++....-+.|-+.|||.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 357999999999999999999864 455578888888877654 344444556789999999999999999888 99
Q ss_pred Ccccc
Q 019228 331 DQKGK 335 (344)
Q Consensus 331 ~~~~g 335 (344)
+.+=+
T Consensus 150 ~NdLP 154 (325)
T KOG2940|consen 150 TNDLP 154 (325)
T ss_pred hccCc
Confidence 87643
No 63
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.10 E-value=1.2e-05 Score=73.36 Aligned_cols=86 Identities=20% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS 308 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda 308 (344)
+..+.+.+....+ .+|||||||+|.+++.|++..-....+.+.|.++.+++.|+++ ++. +.+-..|+
T Consensus 66 ~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~ 137 (215)
T TIGR00080 66 VAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG 137 (215)
T ss_pred HHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc
Confidence 4556666654332 5899999999999998887521101133356666777666543 432 22222234
Q ss_pred cCCCCCCCcccceEecccc
Q 019228 309 KQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 309 ~rLPFpD~SFDlVhcs~~L 327 (344)
...+...+.||+|++..+.
T Consensus 138 ~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 138 TQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred ccCCcccCCCCEEEEcCCc
Confidence 4444456799999987544
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.06 E-value=1.3e-05 Score=72.97 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=50.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC-CCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP-FpD~SFDlVhcs~~Li~ 329 (344)
.+|||||||+|.++..+.+.+. .+...|.++.+++.|.++ +....+...+...++ .+++.||+|+|..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 4799999999999998888753 344567777777766654 333333333444444 45689999999887755
Q ss_pred cC
Q 019228 330 WD 331 (344)
Q Consensus 330 W~ 331 (344)
..
T Consensus 127 ~~ 128 (233)
T PRK05134 127 VP 128 (233)
T ss_pred cC
Confidence 43
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.04 E-value=5.5e-06 Score=75.27 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=52.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc-cCCC--CCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS-KQLP--YPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda-~rLP--FpD~SFDlVhcs~~ 326 (344)
.+|||+|||+|.++..|++..- ...+.+.|.++.+++.|.++ +++ +.+-..|+ +.++ +++++||+|++..+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 5899999999999998877521 12445567777777776643 332 33333345 5677 88999999999755
Q ss_pred ccccCc
Q 019228 327 GVDWDQ 332 (344)
Q Consensus 327 Li~W~~ 332 (344)
. +|..
T Consensus 121 ~-p~~~ 125 (202)
T PRK00121 121 D-PWPK 125 (202)
T ss_pred C-CCCC
Confidence 4 6754
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.04 E-value=1.2e-05 Score=80.80 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=61.9
Q ss_pred ceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH
Q 019228 216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (344)
Q Consensus 216 ~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~ 293 (344)
..+.|-.....| ++.+.=-..+.+.++... ..+|||+|||+|.++..++++.-. ..+...|.++.+++.
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~--------~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~ 267 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENL--------EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVAS 267 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCccc--------CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHH
Confidence 445554444455 355655667888887422 247999999999999999886321 244557788777777
Q ss_pred HHHc----CC------CeEEeeccccCCCCCCCcccceEecccc
Q 019228 294 TLER----GL------PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 294 A~eR----Gv------pa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
|++. +. .+..+++ .. .+++.+||+|+|+-..
T Consensus 268 A~~N~~~n~~~~~~~v~~~~~D~--l~-~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 268 SRLNVETNMPEALDRCEFMINNA--LS-GVEPFRFNAVLCNPPF 308 (378)
T ss_pred HHHHHHHcCcccCceEEEEEccc--cc-cCCCCCEEEEEECcCc
Confidence 7653 21 1222221 11 2455789999997443
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.03 E-value=8.1e-06 Score=74.28 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=45.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+|||+|||+|.++..++.+.- ...+.+.|.++.+++.|++ .++. +.+-..++..+++ +++||+|+|..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 5799999999998888775310 1234446777777665554 3442 3333335567777 88999999963
No 68
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.00 E-value=1.7e-05 Score=75.42 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=55.8
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF 306 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l 306 (344)
...++.|.+.+....+ .+|||||||+|.++..|+++.. .+.+.|.++.+++.+.++ .+.+..+
T Consensus 28 ~~i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~-- 94 (272)
T PRK00274 28 ENILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEG-- 94 (272)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEC--
Confidence 3456677776654332 5799999999999999998743 345567778888877664 2333444
Q ss_pred cccCCCCCCCcccceEec
Q 019228 307 ASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 307 da~rLPFpD~SFDlVhcs 324 (344)
|+..+++++-.+|.|+++
T Consensus 95 D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 95 DALKVDLSELQPLKVVAN 112 (272)
T ss_pred hhhcCCHHHcCcceEEEe
Confidence 566788776446888775
No 69
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.98 E-value=2.7e-05 Score=73.38 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----CCeEEee
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGS 305 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~~~ 305 (344)
...++.|.+.+.... ..+|||||||+|.++..|+++.. .+.+.|.++.+++.+.++- +.++.+
T Consensus 15 ~~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~- 82 (258)
T PRK14896 15 DRVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEG- 82 (258)
T ss_pred HHHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEe-
Confidence 445777777765433 25899999999999999998743 3445677777877776542 223344
Q ss_pred ccccCCCCCCCcccceEecc
Q 019228 306 FASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 306 lda~rLPFpD~SFDlVhcs~ 325 (344)
|+..+++++ ||.|+++-
T Consensus 83 -D~~~~~~~~--~d~Vv~Nl 99 (258)
T PRK14896 83 -DALKVDLPE--FNKVVSNL 99 (258)
T ss_pred -ccccCCchh--ceEEEEcC
Confidence 566777764 89999873
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.98 E-value=4.9e-05 Score=67.11 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-e--E
Q 019228 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-A--M 302 (344)
Q Consensus 230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a--~ 302 (344)
.+.-...|.+.+.... ..+|||+|||+|.++..++++... ..+...|.++..++.|++ .++. + .
T Consensus 16 ~d~~t~lL~~~l~~~~--------~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~ 86 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHK--------GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVV 86 (170)
T ss_dssp HHHHHHHHHHHHHHHT--------TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCHHHHHHHHHHhhcc--------CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccc
Confidence 3333445566555321 258999999999999999987432 134556777777776654 2444 3 3
Q ss_pred EeeccccCCCCCCCcccceEec
Q 019228 303 IGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 303 ~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+++ --+++++.||+|+|+
T Consensus 87 ~~d~---~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 87 QSDL---FEALPDGKFDLIVSN 105 (170)
T ss_dssp ESST---TTTCCTTCEEEEEE-
T ss_pred cccc---cccccccceeEEEEc
Confidence 3332 124558999999997
No 71
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.97 E-value=7.6e-06 Score=75.14 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=43.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC--------CCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------PYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL--------PFpD~SFDlVhcs~~ 326 (344)
.+|||+|||||.++..++++....-.+.+.|+++ +.. ..++.+..+++ ..+ ++++++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~--~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDF--RDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCC--CChHHHHHHHHHhCCCCCCEEecCCC
Confidence 5899999999999998887621101222233333 111 12455566653 443 478899999999765
Q ss_pred ccccC
Q 019228 327 GVDWD 331 (344)
Q Consensus 327 Li~W~ 331 (344)
. +|+
T Consensus 127 ~-~~~ 130 (209)
T PRK11188 127 P-NMS 130 (209)
T ss_pred C-ccC
Confidence 5 554
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=97.97 E-value=4e-05 Score=70.26 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=44.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++..+. ..+.+.|.++.+++.|++. ++.+.+...|... ++++++||+|+|+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 108 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSN 108 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence 4799999999999988887642 1345567777777655542 4433333233322 4678899999996
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.96 E-value=2.5e-05 Score=74.77 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=45.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+|||+|||+|.++..++..+. -.+.+.|.++.+++.|++. ++...+.......+++.++.||+|+|+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI 233 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence 5899999999999888776643 1345567777777776654 3332222211223566788999999963
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.95 E-value=3.8e-05 Score=75.95 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=56.5
Q ss_pred cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEE
Q 019228 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMI 303 (344)
Q Consensus 228 ~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~ 303 (344)
++.+.--..+.+.++... ..+|||+|||+|.++..++++.-. ..+...|+++.+++.|++ .++...+
T Consensus 179 ~~lD~gt~lLl~~l~~~~--------~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~ 249 (342)
T PRK09489 179 DGLDVGSQLLLSTLTPHT--------KGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEV 249 (342)
T ss_pred CCCCHHHHHHHHhccccC--------CCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEE
Confidence 355555566667665321 237999999999999999876321 234556777777766654 2444333
Q ss_pred eeccccCCCCCCCcccceEecccc
Q 019228 304 GSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 304 ~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
...|. +...++.||+|+|+-.+
T Consensus 250 ~~~D~--~~~~~~~fDlIvsNPPF 271 (342)
T PRK09489 250 FASNV--FSDIKGRFDMIISNPPF 271 (342)
T ss_pred EEccc--ccccCCCccEEEECCCc
Confidence 22222 33457899999998655
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.94 E-value=3.8e-05 Score=71.10 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=49.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH-HHcCC------------------CeEEeeccccCCCCC-
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-LERGL------------------PAMIGSFASKQLPYP- 314 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A-~eRGv------------------pa~~~~lda~rLPFp- 314 (344)
.+|||+|||.|..+.+|++++- .+.+.|+++..++.+ .+.++ .+.+++ ...++..
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D--~~~~~~~~ 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGD--FFALTAAD 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEcc--CCCCCccc
Confidence 4899999999999999999864 334467777777653 33333 223443 3445432
Q ss_pred CCcccceEecccccccCc
Q 019228 315 SLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 315 D~SFDlVhcs~~Li~W~~ 332 (344)
...||.|+-..++++..+
T Consensus 111 ~~~fD~i~D~~~~~~l~~ 128 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPE 128 (213)
T ss_pred CCCcCEEEechhhccCCH
Confidence 467999998887766543
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.93 E-value=4.5e-05 Score=61.42 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=46.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccC-CCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~r-LPFpD~SFDlVhcs~~L 327 (344)
.+|||+|||+|.++..++++.-. ..+.+.|.++.+++.|++. +++ +.+-..+... +++..++||.|++..+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 48999999999999999876211 2345567777777665432 332 2222223333 45556799999997643
No 77
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.91 E-value=4.4e-05 Score=67.36 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=47.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
.+|||+|||+|.++..+++++. .+.+.|.++.+++.|+++ ++...+...|.... +.++||+|+|+...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEECCCCCCC
Confidence 4799999999999999988754 345578888887776653 33332222233333 35699999998655433
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.90 E-value=3.4e-05 Score=70.29 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEE
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMI 303 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~ 303 (344)
.....++.+.+.++. ...+|||+|||+|.++..+++.... ..+.+.|.++.+++.|++. ++. +.+
T Consensus 72 ~~~~l~~~~l~~~~~---------~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~ 141 (251)
T TIGR03534 72 DTEELVEAALERLKK---------GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTF 141 (251)
T ss_pred ChHHHHHHHHHhccc---------CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEE
Confidence 344556666665542 1247999999999999999875211 1344567777777766543 443 222
Q ss_pred eeccccCCCCCCCcccceEec
Q 019228 304 GSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 304 ~~lda~rLPFpD~SFDlVhcs 324 (344)
-..|... ++++++||+|+|+
T Consensus 142 ~~~d~~~-~~~~~~fD~Vi~n 161 (251)
T TIGR03534 142 LQSDWFE-PLPGGKFDLIVSN 161 (251)
T ss_pred EECchhc-cCcCCceeEEEEC
Confidence 2223333 6778999999995
No 79
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.90 E-value=2e-05 Score=70.99 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=42.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+|||||||+|.++..|+...-. ..+.+.|.++.+++.+.+ .++. +.+-..++..++ ++++||+|+|..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh
Confidence 58999999999998887653210 123445666666554432 3442 323223455664 468999999864
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.89 E-value=9.3e-06 Score=65.61 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=46.9
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCC--CCCCcccceEecc
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLP--FpD~SFDlVhcs~ 325 (344)
+|||+|||+|.+...++++. ...+.+.|+++..++.|++. ++ ++.+...|...++ +++++||+|+++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 79999999999999888775 23556678888777776653 22 2333333455554 8999999999973
No 81
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.85 E-value=2.6e-05 Score=70.13 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=50.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCCC-CCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPFp-D~SFDlVhcs~~Li 328 (344)
.+|||+|||+|.++..+++.+.. +...|.++.+++.+.++ ++ ...+...+...++.+ .++||+|+|..++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 47999999999999988876532 44567777777666553 33 233433455566665 38999999987775
Q ss_pred cc
Q 019228 329 DW 330 (344)
Q Consensus 329 ~W 330 (344)
+.
T Consensus 124 ~~ 125 (224)
T TIGR01983 124 HV 125 (224)
T ss_pred hC
Confidence 44
No 82
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.84 E-value=3.4e-05 Score=78.11 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeE
Q 019228 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAM 302 (344)
Q Consensus 230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~ 302 (344)
.+..++.+.+++....+ .+|||+|||+|.++..|+++.. .+.+.|.++.+++.|.+. ++ .+.
T Consensus 282 ~e~l~~~vl~~l~~~~~--------~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~ 350 (443)
T PRK13168 282 NQKMVARALEWLDPQPG--------DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFY 350 (443)
T ss_pred HHHHHHHHHHHhcCCCC--------CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 35556667776654322 5899999999999999988742 445577888887776643 33 344
Q ss_pred Eeeccc--cCCCCCCCcccceEec
Q 019228 303 IGSFAS--KQLPYPSLSFDMLHCA 324 (344)
Q Consensus 303 ~~~lda--~rLPFpD~SFDlVhcs 324 (344)
.+++.. ..+|+++++||+|++.
T Consensus 351 ~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 351 HANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred EeChHHhhhhhhhhcCCCCEEEEC
Confidence 454321 2356778899999974
No 83
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=5.1e-05 Score=74.43 Aligned_cols=99 Identities=20% Similarity=0.377 Sum_probs=66.1
Q ss_pred cceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228 215 EEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (344)
Q Consensus 215 g~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq 292 (344)
+.-++|-...-+| ++++.=-+.|.+.++...+ .+|||+|||.|.++..|++++-. ..++..|++...++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~ 196 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVE 196 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHH
Confidence 3444554443366 5778778889999985432 37999999999999999987531 24555677777776
Q ss_pred HHHHc----CCCe--EEeeccccCCCCCCCcccceEecc
Q 019228 293 LTLER----GLPA--MIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 293 ~A~eR----Gvpa--~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.|++- ++.. ++. +..-.+-++ .||+|+|+-
T Consensus 197 ~ar~Nl~~N~~~~~~v~~--s~~~~~v~~-kfd~IisNP 232 (300)
T COG2813 197 SARKNLAANGVENTEVWA--SNLYEPVEG-KFDLIISNP 232 (300)
T ss_pred HHHHhHHHcCCCccEEEE--ecccccccc-cccEEEeCC
Confidence 66542 3432 222 123456666 999999973
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.82 E-value=2.5e-05 Score=70.36 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=48.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC---CCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP---YPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP---FpD~SFDlVhcs~~ 326 (344)
.++||||||+|.++..|+++... ..+.+.|.++.+++.|.++ ++. +.+...|+..++ +++++||.|++...
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 47999999999999998876211 1334456667666665442 332 222223444444 67789999998754
Q ss_pred ccccCc
Q 019228 327 GVDWDQ 332 (344)
Q Consensus 327 Li~W~~ 332 (344)
.+|..
T Consensus 97 -dpw~k 101 (194)
T TIGR00091 97 -DPWPK 101 (194)
T ss_pred -CcCCC
Confidence 47754
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.81 E-value=5.9e-05 Score=72.13 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=47.9
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC----eEEeeccccCCCCCCCcccceEecc
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP----AMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp----a~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
..++||||||+|.++..++++.-. ..+...|. +.+++.|++ .++. ++.++ ....++|+ +|+|++++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d--~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVD--IYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecC--ccCCCCCC--CCEEEeEh
Confidence 368999999999999998876210 12223343 345555443 3432 33343 44456664 69999999
Q ss_pred cccccCccc
Q 019228 326 CGVDWDQKG 334 (344)
Q Consensus 326 ~Li~W~~~~ 334 (344)
++++|....
T Consensus 224 ~lh~~~~~~ 232 (306)
T TIGR02716 224 ILYSANEQL 232 (306)
T ss_pred hhhcCChHH
Confidence 999997653
No 86
>PLN03075 nicotianamine synthase; Provisional
Probab=97.77 E-value=3.3e-05 Score=75.55 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc-----CCC--eEEeeccccCCCCCCCcccceEecc
Q 019228 254 VRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-----GLP--AMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR-----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.++|||||||.|-+++.++. +-.....+.+.|.++++++.|++. ++. +.+...|+..++-..+.||+|+|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 47899999998866554332 211222456678888887777653 221 333334455554346789999999
Q ss_pred cccccCccccc
Q 019228 326 CGVDWDQKGKC 336 (344)
Q Consensus 326 ~Li~W~~~~g~ 336 (344)
++++|...+..
T Consensus 203 ALi~~dk~~k~ 213 (296)
T PLN03075 203 ALVGMDKEEKV 213 (296)
T ss_pred cccccccccHH
Confidence 99999765443
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.76 E-value=5e-05 Score=73.20 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=48.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------CCCe--EEeeccccCCCCCCCc----ccceE
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPA--MIGSFASKQLPYPSLS----FDMLH 322 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------Gvpa--~~~~lda~rLPFpD~S----FDlVh 322 (344)
.+|||+|||||.++..|+++......+.+.|++++|++.|.++ ++.+ +.+++. ..++++... ..+++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~-~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT-QPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc-chhhhhcccccCCeEEEE
Confidence 4799999999999999887632123456688999988877664 2332 456552 224444433 33444
Q ss_pred ecccccccCccc
Q 019228 323 CARCGVDWDQKG 334 (344)
Q Consensus 323 cs~~Li~W~~~~ 334 (344)
+..++.++.+.+
T Consensus 144 ~gs~~~~~~~~e 155 (301)
T TIGR03438 144 PGSTIGNFTPEE 155 (301)
T ss_pred ecccccCCCHHH
Confidence 444554444433
No 88
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.76 E-value=0.00011 Score=69.24 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=44.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeE-Eee-----ccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGS-----FASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~-~~~-----lda~rLPFpD~SFDlVhcs~~L 327 (344)
.++||+|||||.|+..|+++++. .+.+.|++..|+...+.....+. +.. ++.+.++..-..||+++++.++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 58999999999999999998542 34556777776655333332211 111 1222333333589999988664
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.75 E-value=8.8e-05 Score=72.18 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||||++...++..+. .+.+.|+++.|++.|++. ++. +.+...|+.++|+++++||+|+|.
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence 4799999999999766555443 334467777776655432 443 233334677899999999999995
No 90
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.75 E-value=2.6e-05 Score=80.90 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=65.6
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
.+|.|+|...|.|.||+.|.+..|-+|.+.+. ....-+...-+||+--++.+- -+.+|+-.+|||+||+...+-.|..
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence 68999999999999999999999999999887 444556677899964444443 4688999999999999998877765
Q ss_pred cc
Q 019228 333 KG 334 (344)
Q Consensus 333 ~~ 334 (344)
.=
T Consensus 443 rC 444 (506)
T PF03141_consen 443 RC 444 (506)
T ss_pred cc
Confidence 53
No 91
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.74 E-value=0.00012 Score=68.12 Aligned_cols=74 Identities=18% Similarity=0.004 Sum_probs=50.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH-HHcCCCe----------------EEeeccccCCCCC-CC
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-LERGLPA----------------MIGSFASKQLPYP-SL 316 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A-~eRGvpa----------------~~~~lda~rLPFp-D~ 316 (344)
.+|||+|||.|..+.+|++++. .+.+.|+++..++.+ .++++.. .+-..|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 4899999999999999999865 344567887777754 4455431 1122234455433 36
Q ss_pred cccceEecccccccC
Q 019228 317 SFDMLHCARCGVDWD 331 (344)
Q Consensus 317 SFDlVhcs~~Li~W~ 331 (344)
.||+|+-..++++..
T Consensus 116 ~fd~v~D~~~~~~l~ 130 (218)
T PRK13255 116 DVDAVYDRAALIALP 130 (218)
T ss_pred CeeEEEehHhHhhCC
Confidence 899999888776654
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=97.71 E-value=9e-05 Score=72.06 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=49.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|||+|||+|.++..++.+.- ...+.+.|+++.+++.|+++- +.+..++ ...++ .+.+||+|++.-...+
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D--~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD--VFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc--hhhhc-ccCCCcEEEEcCCccc
Confidence 4799999999999888876421 124556788888998887752 3344444 44443 3578999999766654
No 93
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.71 E-value=0.00014 Score=64.53 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=42.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
.+|||||||+|.++..++++.- ...+.+.|.++.+++.|+++ ++. +.+...+. ..++ .++||+|++...
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA-PIEL-PGKADAIFIGGS 106 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhc-CcCCCEEEECCC
Confidence 5899999999999998877521 12344567777777666542 332 22222222 2344 368999998754
No 94
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.70 E-value=8.5e-05 Score=71.97 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=57.9
Q ss_pred eeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228 217 QISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (344)
Q Consensus 217 ~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq 292 (344)
.+.++. +.||. .++..++.+.+++... ...+|||+|||+|.++..|++++. .+.+.|.++.+++
T Consensus 142 ~~~~~~-~sF~Q~n~~~~~~l~~~v~~~l~~~--------~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~ 209 (315)
T PRK03522 142 PLFIRP-QSFFQTNPAVAAQLYATARDWVREL--------PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIA 209 (315)
T ss_pred EEEECC-CeeeecCHHHHHHHHHHHHHHHHhc--------CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHH
Confidence 344432 44662 2344555566665421 125899999999999999998753 3445677777776
Q ss_pred HHHHc----CCC-eEEeeccccCCCC-CCCcccceEec
Q 019228 293 LTLER----GLP-AMIGSFASKQLPY-PSLSFDMLHCA 324 (344)
Q Consensus 293 ~A~eR----Gvp-a~~~~lda~rLPF-pD~SFDlVhcs 324 (344)
.|++. ++. +.+-..|+..++. .++.||+|++.
T Consensus 210 ~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 210 CAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred HHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 66543 443 2232234444432 35689999976
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=97.69 E-value=0.00014 Score=63.15 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=46.0
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C-----CCeEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-----LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G-----vpa~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+|||+|||+|.++..++.++. .+.+.|.++.+++.+++. + +.+..+++ . -++++++||+|+++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~-~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL--F-EPFRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc--c-ccccccCceEEEECC
Confidence 5799999999999999988743 445567777777766443 2 33333432 2 256777999999864
Q ss_pred cc
Q 019228 326 CG 327 (344)
Q Consensus 326 ~L 327 (344)
-.
T Consensus 99 p~ 100 (188)
T PRK14968 99 PY 100 (188)
T ss_pred Cc
Confidence 43
No 96
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.67 E-value=0.00017 Score=67.50 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeecc
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~ld 307 (344)
...++.|.+.+.... ..+|||||||+|.++..|+++... +...|.++.+++.+.++- -.+.+...|
T Consensus 15 ~~i~~~i~~~~~~~~--------~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D 83 (253)
T TIGR00755 15 ESVIQKIVEAANVLE--------GDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGD 83 (253)
T ss_pred HHHHHHHHHhcCCCC--------cCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECc
Confidence 344666666665432 358999999999999999987432 344567777777666541 123333345
Q ss_pred ccCCCCCCCccc---ceEec
Q 019228 308 SKQLPYPSLSFD---MLHCA 324 (344)
Q Consensus 308 a~rLPFpD~SFD---lVhcs 324 (344)
+..+|++ +|| +|+++
T Consensus 84 ~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 84 ALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred hhcCChh--HcCCcceEEEc
Confidence 6777876 566 66665
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.66 E-value=0.00011 Score=74.35 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=48.4
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH----HHcCCC-eEEeeccccCC--CCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQL--PYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A----~eRGvp-a~~~~lda~rL--PFpD~SFDlVhcs~~L 327 (344)
..+||||||+|.++..++.+.-. ..+.+.|++..+++.| .+.++. +.+-..|+..+ +|++++||.|++...
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 47999999999999999876211 1223345555554443 334553 22223345444 689999999998744
Q ss_pred cccCc
Q 019228 328 VDWDQ 332 (344)
Q Consensus 328 i~W~~ 332 (344)
.+|..
T Consensus 202 dPW~K 206 (390)
T PRK14121 202 VPWDK 206 (390)
T ss_pred CCccc
Confidence 58854
No 98
>PHA03412 putative methyltransferase; Provisional
Probab=97.65 E-value=5.8e-05 Score=72.00 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++++- .....+.+.|+++.+++.|++.. +++..+ |....++ +++||+|+|+
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~--D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINA--DALTTEF-DTLFDMAISN 121 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEc--chhcccc-cCCccEEEEC
Confidence 489999999999998876531 01125666788888888887553 333444 4444554 6799999997
No 99
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.65 E-value=0.00015 Score=71.47 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+|||||||+|.+++.+++..-..-.+...|.++.+++.|++ .++. +.+...|+...+.+.+.||+|++...+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 589999999999999888741100012335677777766654 2442 222233455666666789999996443
No 100
>PRK04266 fibrillarin; Provisional
Probab=97.65 E-value=0.00012 Score=68.43 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=41.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH----HHHc-CCCeEEeecccc--CCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLER-GLPAMIGSFASK--QLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~----A~eR-Gvpa~~~~lda~--rLPFpD~SFDlVhcs~ 325 (344)
.+|||+|||+|.++..|++.--. -.+.+.|.++.|++. |.++ ++....+++... ..+++ ++||+|++..
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 58999999999999999875211 134445777766653 3333 344455543210 12233 5699999753
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.62 E-value=0.00023 Score=64.46 Aligned_cols=70 Identities=19% Similarity=0.085 Sum_probs=43.4
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+|||||||+|.++..|++..- .+...|.++.+++.|.++ ++. +.+...|......+.++||+|++..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 5799999999999887776531 233456667777666553 332 222222222221235899999997654
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.60 E-value=0.00014 Score=67.62 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=44.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---C----CCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G----LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---G----vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++.... ...+.+.|.++.+++.|++. . +.+..+++ .-|+++++||+|+|.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSN 182 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEEC
Confidence 4799999999999998887531 12345567787777777654 1 22233332 224557899999995
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.59 E-value=0.00013 Score=54.37 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=45.4
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH---cC--CCeEEeeccccCCC-CCCCcccceEecccccc
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RG--LPAMIGSFASKQLP-YPSLSFDMLHCARCGVD 329 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e---RG--vpa~~~~lda~rLP-FpD~SFDlVhcs~~Li~ 329 (344)
++||+|||+|.++..+++.. ...+...|.++.+++.+.+ .. ....+-..+....+ ++.+.||+|++..++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999998888732 1244556777777666651 11 11222222333333 36788999999987754
No 104
>PRK04148 hypothetical protein; Provisional
Probab=97.58 E-value=0.00021 Score=62.64 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=51.2
Q ss_pred CeEEEECCccch-hhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCC-CCcccceEecccc
Q 019228 255 RTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGs-faa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFp-D~SFDlVhcs~~L 327 (344)
.++||||||+|. ++..|.+.+. .+.+.|.++..++.|++.++.++.+++- +-.+. -..+|+|.+.+.-
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCHHHHhcCCEEEEeCCC
Confidence 579999999995 8889998865 3445788888899999999988888752 22222 3568888887653
No 105
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00018 Score=70.65 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=47.6
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCe--EEeecc
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPA--MIGSFA 307 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa--~~~~ld 307 (344)
+..+.+++. ..++|||+|||+|-++...+..++. .+.+.|+.+-.++.|++ .+++. ....
T Consensus 153 L~~Le~~~~----------~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~-- 218 (300)
T COG2264 153 LEALEKLLK----------KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKG-- 218 (300)
T ss_pred HHHHHHhhc----------CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhccc--
Confidence 666666554 2368999999999888776665432 22334555555555544 35652 2221
Q ss_pred ccCCCCCC-CcccceEecc
Q 019228 308 SKQLPYPS-LSFDMLHCAR 325 (344)
Q Consensus 308 a~rLPFpD-~SFDlVhcs~ 325 (344)
...+.++. ..||+|+|+-
T Consensus 219 ~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 219 FLLLEVPENGPFDVIVANI 237 (300)
T ss_pred ccchhhcccCcccEEEehh
Confidence 12445666 4999999973
No 106
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.56 E-value=9e-05 Score=69.37 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=42.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++..+.. .+.+.|.++.+++.|++. ++.. ...++..+.+||+|+|+
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~------~~~~~~~~~~fD~Vvan 186 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVEL------NVYLPQGDLKADVIVAN 186 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCc------eEEEccCCCCcCEEEEc
Confidence 58999999999988877776542 345578888888777654 3311 11233334489999986
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.56 E-value=0.00032 Score=71.80 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=43.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCC-CCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYP-SLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFp-D~SFDlVhcs~ 325 (344)
.+|||+|||+|.++..|+.+.. ...+.+.|.++.+++.|++. +.. +..+++ ....++ +++||+|+|+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl--~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSW--FDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch--hccccccCCCccEEEECC
Confidence 3799999999999988875411 11334567777887776653 333 334443 222232 46899999963
No 108
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00012 Score=69.32 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=48.7
Q ss_pred eEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc-----CCCeE-EeeccccCCC-CCCCcccceEecccc
Q 019228 256 TILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARCG 327 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~-~~~lda~rLP-FpD~SFDlVhcs~~L 327 (344)
.+|.||||||.--.++-. .+. +++..|.++.|.++|.++ ...+. +-++++++|| .+|.|+|+|+|..||
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~---svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPIN---SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCc---eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 589999999976665543 333 445567777776665543 22222 3445688999 999999999999877
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.51 E-value=0.00026 Score=71.54 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=46.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC--CCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP--FpD~SFDlVhc 323 (344)
.+|||+|||+|..+..++++.-. ..+.+.|.++.+++.++++ |+...+...|+..++ +++++||.|++
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 57999999999999998876311 2345568888777666543 444333334555554 45789999993
No 110
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00014 Score=69.72 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=46.3
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------CCCeEEeeccccCCCCCCCcccceEec
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------Gvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..+|||+|||+|..+..|+++--. ..|.+.++.+.+.++|.+- .+.+..+|+..-.-++.-.+||+|+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 468999999999999999887211 2455567777777777542 233444544222223444589999996
No 111
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.46 E-value=0.00037 Score=67.73 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C----CCeE
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAM 302 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G----vpa~ 302 (344)
...++.|.+.+....+ .+|||||||+|.++..|+++.. .+.+.|+++.+++.+.++ + +.++
T Consensus 22 ~~i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4457777777654332 5799999999999999988743 234456777777666543 2 2334
Q ss_pred EeeccccCCCCCCCcccceEec
Q 019228 303 IGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 303 ~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+ |+...++ ..||.|+++
T Consensus 91 ~~--Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 91 EG--DALKTEF--PYFDVCVAN 108 (294)
T ss_pred EC--CHhhhcc--cccCEEEec
Confidence 44 4444444 468988874
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.44 E-value=0.00023 Score=68.40 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=44.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++.+.- ...+.+.|+++.+++.|++. ++. +..+++ . -++++++||+|+|+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~-~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--F-AALPGRKYDLIVSN 196 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--h-hccCCCCccEEEEC
Confidence 5799999999999999987521 01344567777777766543 442 233432 1 14567789999996
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.37 E-value=0.00086 Score=63.36 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=56.9
Q ss_pred cceeeecCCCcccc--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228 215 EEQISFRSASLIFD--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (344)
Q Consensus 215 g~~~~FpGggt~F~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq 292 (344)
|-.+..+. +.+++ ..+..++.+.+.+.... ...+|||+|||+|.++..++++.- ...+.+.|.++.+++
T Consensus 54 g~~~~v~~-~vf~pr~~Te~Lv~~~l~~~~~~~-------~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~ 124 (251)
T TIGR03704 54 GLRIAVDP-GVFVPRRRTEFLVDEAAALARPRS-------GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVR 124 (251)
T ss_pred CeEEEECC-CCcCCCccHHHHHHHHHHhhcccC-------CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHH
Confidence 33344433 34552 45556666665543111 124799999999999998876410 013344677777776
Q ss_pred HHHHc----CCCeEEeeccccCCCC-CCCcccceEec
Q 019228 293 LTLER----GLPAMIGSFASKQLPY-PSLSFDMLHCA 324 (344)
Q Consensus 293 ~A~eR----Gvpa~~~~lda~rLPF-pD~SFDlVhcs 324 (344)
.|++. ++.+..+++. ..++- ..+.||+|++.
T Consensus 125 ~A~~N~~~~~~~~~~~D~~-~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 125 CARRNLADAGGTVHEGDLY-DALPTALRGRVDILAAN 160 (251)
T ss_pred HHHHHHHHcCCEEEEeech-hhcchhcCCCEeEEEEC
Confidence 66543 4445555531 12221 13579999986
No 114
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.36 E-value=0.0003 Score=70.74 Aligned_cols=90 Identities=19% Similarity=0.324 Sum_probs=55.8
Q ss_pred Ccccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--
Q 019228 224 SLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-- 297 (344)
Q Consensus 224 gt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-- 297 (344)
+.||. .....++.+.+++...+ ..+|||+|||+|.++..|++..- .+.+.|.++.+++.|++.
T Consensus 267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~--------~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~ 335 (431)
T TIGR00479 267 RDFFQVNSGQNEKLVDRALEALELQG--------EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAE 335 (431)
T ss_pred CceeecCHHHHHHHHHHHHHHhccCC--------CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHH
Confidence 45663 23344566666654332 25799999999999999987632 234456777777666542
Q ss_pred --CC---CeEEeeccc--cCCCCCCCcccceEec
Q 019228 298 --GL---PAMIGSFAS--KQLPYPSLSFDMLHCA 324 (344)
Q Consensus 298 --Gv---pa~~~~lda--~rLPFpD~SFDlVhcs 324 (344)
++ .++.+++.. ..+++.+++||+|+..
T Consensus 336 ~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 336 LNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred HhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 33 344454311 1345667889999974
No 115
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.35 E-value=0.00033 Score=66.82 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=44.0
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..|+...- ...+.+.|+++.+++.|++. ++. +..+++ . -+++++.||+|+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~--~-~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL--F-EPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--h-ccCcCCCccEEEEC
Confidence 4799999999999998887521 01344567777777766653 332 333432 2 25666689999996
No 116
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.34 E-value=0.00033 Score=62.41 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=38.6
Q ss_pred CeEEEECCccchhhHHHhhCC-----ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCC--------CCCCcccce
Q 019228 255 RTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDML 321 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLP--------FpD~SFDlV 321 (344)
.+|||+|||+|.++..++++. ++++++ ++.+ ...++....+++ ...+ +++++||+|
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDi-----s~~~----~~~~i~~~~~d~--~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDL-----QPMK----PIENVDFIRGDF--TDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEec-----cccc----cCCCceEEEeeC--CChhHHHHHHHHhCCCCccEE
Confidence 589999999999988776641 444444 3322 112444444443 3332 678899999
Q ss_pred Eeccc
Q 019228 322 HCARC 326 (344)
Q Consensus 322 hcs~~ 326 (344)
+|..+
T Consensus 103 ~~~~~ 107 (188)
T TIGR00438 103 MSDAA 107 (188)
T ss_pred EcCCC
Confidence 99653
No 117
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.31 E-value=0.00029 Score=68.59 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=43.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..|+.+.- ...+.+.|+++.+++.|++. ++ .+..+++ .. ++++++||+|+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hh-hCCCCCccEEEEC
Confidence 4799999999999999887521 12344567777777766543 43 2334443 11 3456789999996
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.31 E-value=0.00056 Score=69.00 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=45.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEE--eeccccCCCC--CCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~--~~lda~rLPF--pD~SFDlVhc 323 (344)
.+|||+|||+|..+.++++.-- ...+.+.|.++.+++.++++ |+...+ .+.|+..+++ ++++||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 5899999999999988877411 12445567777777665443 555322 4445555555 6789999995
No 119
>PTZ00146 fibrillarin; Provisional
Probab=97.29 E-value=0.00033 Score=68.55 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=43.6
Q ss_pred CeEEEECCccchhhHHHhhCC-----ceEEEcccccccHHHHHHHHHc-CCCeEEeeccc-cCCCCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLER-GLPAMIGSFAS-KQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda-~rLPFpD~SFDlVhcs~~ 326 (344)
.+|||+|||+|+++.+|++.- |.++++++.+ .+.+++.|.++ ++.++++++.. ..++++..+||+|++..+
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 489999999999999998861 4444333211 11355666554 45555555311 123334568999999753
No 120
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.28 E-value=0.00057 Score=61.54 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccC-CCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~r-LPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++.. +. ...+...|.++.+++.|+++ ++ .+.+-..|... ++..++.||.|++.
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 48999999999998876542 11 01334456776676655443 42 12221123333 44445789999984
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.27 E-value=0.00065 Score=69.00 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=44.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhc 323 (344)
.+|||+|||+|..+.++++.--....+.+.|.++.+++.++++ |+. +.+...|+..++ ++++||+|++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 5899999999998887776310011345567777777665543 553 233334555665 6789999994
No 122
>PRK00811 spermidine synthase; Provisional
Probab=97.25 E-value=0.0009 Score=64.30 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C------CCeEEeeccccC-CCCCCCcc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G------LPAMIGSFASKQ-LPYPSLSF 318 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G------vpa~~~~lda~r-LPFpD~SF 318 (344)
..++|||||||+|.++..++++ ++. .+...|+++.+++.|++. + +.+..++ +.. ++..+++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D--a~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD--GIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc--hHHHHhhCCCcc
Confidence 3578999999999999988876 432 455577888888877653 1 1223343 322 44467899
Q ss_pred cceEecc
Q 019228 319 DMLHCAR 325 (344)
Q Consensus 319 DlVhcs~ 325 (344)
|+|++-.
T Consensus 152 DvIi~D~ 158 (283)
T PRK00811 152 DVIIVDS 158 (283)
T ss_pred cEEEECC
Confidence 9999853
No 123
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.24 E-value=0.00074 Score=66.75 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=55.8
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CCC--e
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 301 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gvp--a 301 (344)
+-..||..|.+++...+......+...++||||||+|.+...|+.+.. ...+.+.|+++..++.|++- ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 557799988888753211011111235799999999988777765411 12344456666666555432 232 1
Q ss_pred EEe-eccccCC----CCCCCcccceEecccccccCcc
Q 019228 302 MIG-SFASKQL----PYPSLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 302 ~~~-~lda~rL----PFpD~SFDlVhcs~~Li~W~~~ 333 (344)
.+. ..+...+ -.+++.||+|+|+ -+++..
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN---PPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCN---PPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeC---CCCcCc
Confidence 111 0111122 1357799999996 355543
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.23 E-value=0.00064 Score=69.15 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=46.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC-CCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP-FpD~SFDlVhc 323 (344)
.+|||+|||+|..+.++++.--....+...|+++.+++.+.++ |+. +.+...|+..++ +.+++||.|++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 5799999999998888876410011345567787777665543 554 233344666776 66789999996
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.22 E-value=0.00077 Score=62.60 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC---CeEEe
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL---PAMIG 304 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~ 304 (344)
.+..+.+.+.++++ .+|||||||+|.+++.|+.. +-.+ .+...+..+..++.|+++ ++ .+..+
T Consensus 60 ~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g-~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 60 MVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVG-RVVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp HHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTE-EEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred HHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccc-eEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 45566666666544 58999999999999887763 1000 112234555555555443 33 34555
Q ss_pred eccccCCCCC-CCcccceEecccc
Q 019228 305 SFASKQLPYP-SLSFDMLHCARCG 327 (344)
Q Consensus 305 ~lda~rLPFp-D~SFDlVhcs~~L 327 (344)
+. . ..++ ...||.|++..+.
T Consensus 131 dg--~-~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 131 DG--S-EGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp -G--G-GTTGGG-SEEEEEESSBB
T ss_pred ch--h-hccccCCCcCEEEEeecc
Confidence 43 2 3333 4689999998665
No 126
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.21 E-value=0.00092 Score=61.62 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=52.7
Q ss_pred ccceeeecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH
Q 019228 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (344)
Q Consensus 214 eg~~~~FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~ 293 (344)
.|.++..|.+..+--..+...+.+.+++.... ...+|||+|||+|.++..++.++.. .+...+.++..++.
T Consensus 21 ~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~-------~~~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~ 91 (199)
T PRK10909 21 RGRKLPVPDSPGLRPTTDRVRETLFNWLAPVI-------VDARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQ 91 (199)
T ss_pred CCCEeCCCCCCCcCcCCHHHHHHHHHHHhhhc-------CCCEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHH
Confidence 34455555432111233444455555543111 1247999999999999865554321 33445555555554
Q ss_pred HHH----cCC---CeEEeeccccCCCCCCCcccceEec
Q 019228 294 TLE----RGL---PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 294 A~e----RGv---pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
|.+ .++ .+..+++ .+.++...++||+|++.
T Consensus 92 a~~Nl~~~~~~~v~~~~~D~-~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 92 LIKNLATLKAGNARVVNTNA-LSFLAQPGTPHNVVFVD 128 (199)
T ss_pred HHHHHHHhCCCcEEEEEchH-HHHHhhcCCCceEEEEC
Confidence 433 233 2333432 12233345679999986
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.18 E-value=0.001 Score=67.41 Aligned_cols=68 Identities=24% Similarity=0.111 Sum_probs=46.2
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC----CCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP----YPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP----FpD~SFDlVhc 323 (344)
.+|||+|||+|..+..|++. +-. ..+...|.++.+++.++++ |+. +.+-..|+..++ +.+++||.|++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~-g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQ-GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 57999999999999888774 111 1345567787777665543 543 333334566666 66889999995
No 128
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.17 E-value=0.00099 Score=65.12 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=36.6
Q ss_pred CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||||||+|-++..-+.. .|.++++.+.-+..+. +.+...++...+... ....++...||+|+++
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVS--LSEDLVEGKFDLVVAN 232 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEES--CTSCTCCS-EEEEEEE
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEE--EecccccccCCEEEEC
Confidence 58999999999776554444 3555555443333322 223334554333221 1234556999999986
No 129
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.16 E-value=0.00065 Score=63.41 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=52.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH----HcCCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~----eRGvp--a~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+|||+|||.|.+...|++.+... .+.+.|.++..++.|+ .++++ +.+..+|...--|..+.||+|+=-..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 479999999999999999987542 3788899988876654 33555 344444444557888999999865443
No 130
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.07 E-value=0.0019 Score=64.31 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=55.2
Q ss_pred cceeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHH
Q 019228 215 EEQISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ 290 (344)
Q Consensus 215 g~~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~ 290 (344)
|-.+.++. +.||. .++..++.+.+++... ...+|||++||+|.++..++.++. .+.+.|.++..
T Consensus 200 g~~~~~~~-~~F~Q~n~~~~~~l~~~~~~~l~~~--------~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~a 267 (374)
T TIGR02085 200 DVPLVIRP-QSFFQTNPKVAAQLYATARQWVREI--------PVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEA 267 (374)
T ss_pred CEEEEECC-CccccCCHHHHHHHHHHHHHHHHhc--------CCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHH
Confidence 43566654 45773 2333344455554311 125899999999999999987643 33445666666
Q ss_pred HHHHHH----cCCC-eEEeeccccCC-CCCCCcccceEec
Q 019228 291 VQLTLE----RGLP-AMIGSFASKQL-PYPSLSFDMLHCA 324 (344)
Q Consensus 291 Iq~A~e----RGvp-a~~~~lda~rL-PFpD~SFDlVhcs 324 (344)
++.|++ .++. +.+...|+... +-..+.||+|++.
T Consensus 268 v~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 268 IACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred HHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 665554 2442 22222233332 2122469999875
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0015 Score=66.12 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=43.7
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++++--....+.+.|+++.+++.++++ |+. +.+...|+..++ ++ ++||+|++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 5799999999999988887410011345567777777666543 443 222223444442 44 789999974
No 132
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00089 Score=64.59 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=45.1
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
+|||+|||+|..+..|+.+... ..+.+.|+++..++.|++ .++.- +..+...-++=-.+.||+|+|+ -+|.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~~~~~~fDlIVsN---PPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFEPLRGKFDLIVSN---PPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeecccccCCceeEEEeC---CCCC
Confidence 7999999999999999887432 244556777777666654 35311 1111110111112389999996 3666
Q ss_pred ccc
Q 019228 332 QKG 334 (344)
Q Consensus 332 ~~~ 334 (344)
+..
T Consensus 188 p~~ 190 (280)
T COG2890 188 PAE 190 (280)
T ss_pred CCc
Confidence 554
No 133
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.02 E-value=0.0025 Score=47.64 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=42.7
Q ss_pred EEEECCccchhh--HHHhhCCceEEEcccccccHHHHHHHHHcC-------CCeEEeeccccC--CCCCC-CcccceEec
Q 019228 257 ILDIGCGYGSFG--AHLFSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQ--LPYPS-LSFDMLHCA 324 (344)
Q Consensus 257 VLDVGCGtGsfa--a~Laer~V~~~sIa~~D~sea~Iq~A~eRG-------vpa~~~~lda~r--LPFpD-~SFDlVhcs 324 (344)
+||+|||+|... ..+....... .+.|.+..+++.+.... +....++ ... +||.+ .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYV---VGVDLSPEMLALARARAEGAGLGLVDFVVAD--ALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEec--cccCCCCCCCCCceeEE-ee
Confidence 999999999854 3333322122 22577776666544332 2233333 333 89999 599999 77
Q ss_pred ccccccCc
Q 019228 325 RCGVDWDQ 332 (344)
Q Consensus 325 ~~Li~W~~ 332 (344)
.+..+|..
T Consensus 126 ~~~~~~~~ 133 (257)
T COG0500 126 LLVLHLLP 133 (257)
T ss_pred eeehhcCC
Confidence 77766654
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.99 E-value=0.0014 Score=62.09 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=45.7
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhc 323 (344)
.+|||+|||+|..+..|++.--..-.+...|.++.+++.++++ ++. +.+...|+..++...+.||.|++
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 5799999999999988876410001345568887777665543 443 23333456667777778999986
No 135
>PRK04457 spermidine synthase; Provisional
Probab=96.98 E-value=0.00096 Score=63.49 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-C-------CCeEEeeccccC-CCCCCCcccceEec
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-G-------LPAMIGSFASKQ-LPYPSLSFDMLHCA 324 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-G-------vpa~~~~lda~r-LPFpD~SFDlVhcs 324 (344)
.++|||||||+|+++..++++.. ...+...|+++++++.|++. + +.+..++ +.. ++-..++||+|++-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~D--a~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEAD--GAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECC--HHHHHHhCCCCCCEEEEe
Confidence 46899999999999998877521 12455578888888888764 2 1223343 321 22234689999985
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.95 E-value=0.002 Score=59.36 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=48.9
Q ss_pred CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
..++|||||+|+|.++..++++ ++.+ .-.|+ +..++.+.+. .+..+-+++ . -|+|. +|+|+..++|+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~---~v~Dl-p~v~~~~~~~~rv~~~~gd~--f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRA---TVFDL-PEVIEQAKEADRVEFVPGDF--F-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEE---EEEE--HHHHCCHHHTTTEEEEES-T--T-TCCSS--ESEEEEESSGGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcc---eeecc-HhhhhccccccccccccccH--H-hhhcc--ccceeeehhhhh
Confidence 4578999999999999998875 3322 22444 3344445442 244455554 2 46677 999999999999
Q ss_pred cCcccccc
Q 019228 330 WDQKGKCQ 337 (344)
Q Consensus 330 W~~~~g~~ 337 (344)
|.+++-++
T Consensus 171 ~~d~~~~~ 178 (241)
T PF00891_consen 171 WSDEDCVK 178 (241)
T ss_dssp S-HHHHHH
T ss_pred cchHHHHH
Confidence 99876544
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.92 E-value=0.00092 Score=69.43 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=42.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||+|||+|.++..++.+.- ...+.+.|.++.+++.|++. ++ .+..+++ . -++++++||+|+|+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~-~~~~~~~fDlIvsN 213 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--F-ENIEKQKFDFIVSN 213 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch--h-hhCcCCCccEEEEC
Confidence 4799999999999988875410 01334467777777666653 33 2233332 1 13456789999995
No 138
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.92 E-value=0.0019 Score=57.85 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
.+|||+|||+|.++..++...- ...+.+.|.++.+++.|++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHH
Confidence 5899999999999988865310 0134446777777666654
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=96.88 E-value=0.0024 Score=64.55 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------C------CCeEEeeccccC-CCCCCCc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------G------LPAMIGSFASKQ-LPYPSLS 317 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------G------vpa~~~~lda~r-LPFpD~S 317 (344)
..++||+||||+|..+..+++... ...+...|+++++++.|++. + +.+.+++ +.+ |+-.++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D--a~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD--AKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc--HHHHHHhcCCC
Confidence 457999999999988887777531 12556678889999988851 1 1223343 333 4556778
Q ss_pred ccceEec
Q 019228 318 FDMLHCA 324 (344)
Q Consensus 318 FDlVhcs 324 (344)
||+|++-
T Consensus 227 YDVIIvD 233 (374)
T PRK01581 227 YDVIIID 233 (374)
T ss_pred ccEEEEc
Confidence 9999986
No 140
>PLN02366 spermidine synthase
Probab=96.81 E-value=0.0027 Score=62.31 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-----------CCeEEeeccccC-C-CCCCCcc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFASKQ-L-PYPSLSF 318 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~~~lda~r-L-PFpD~SF 318 (344)
..++|||||||+|.++..++++ ++. .+...|+++.+++.|++.- +.+..++ +.. + ..+++.|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~--~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D--a~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVE--QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD--GVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh--HHHHHhhccCCCC
Confidence 3578999999999999998876 332 3444677777777776531 2223333 321 1 1246789
Q ss_pred cceEec
Q 019228 319 DMLHCA 324 (344)
Q Consensus 319 DlVhcs 324 (344)
|+|++-
T Consensus 167 DvIi~D 172 (308)
T PLN02366 167 DAIIVD 172 (308)
T ss_pred CEEEEc
Confidence 999984
No 141
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0073 Score=56.74 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=51.9
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeEEee
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGS 305 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~~ 305 (344)
..-.+.+.+.++.+ .+||+||||+|..++.|++..-.+.+ .+..+...+.|+++ |+ .+.++|
T Consensus 60 ~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~~~V~s---iEr~~~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 60 MVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLVGRVVS---IERIEELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred HHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHhCeEEE---EEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence 34456666666544 58999999999999988886323333 33444445556442 33 345555
Q ss_pred ccccCCCCCC-CcccceEecccc
Q 019228 306 FASKQLPYPS-LSFDMLHCARCG 327 (344)
Q Consensus 306 lda~rLPFpD-~SFDlVhcs~~L 327 (344)
. ..-++. ..||.|++..+.
T Consensus 129 G---~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 129 G---SKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred c---ccCCCCCCCcCEEEEeecc
Confidence 3 355666 889999988654
No 142
>PRK03612 spermidine synthase; Provisional
Probab=96.50 E-value=0.0047 Score=64.33 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=47.1
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------------CCCeEEeeccccC-CCCCCCcc
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQ-LPYPSLSF 318 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------------Gvpa~~~~lda~r-LPFpD~SF 318 (344)
.++|||||||+|..+..++++.. ...+...|+++++++.|++. .+.+..+ |+.+ +...+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~--Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND--DAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC--hHHHHHHhCCCCC
Confidence 46899999999999988887632 12556678888999988772 1222333 3333 33445799
Q ss_pred cceEec
Q 019228 319 DMLHCA 324 (344)
Q Consensus 319 DlVhcs 324 (344)
|+|++.
T Consensus 375 DvIi~D 380 (521)
T PRK03612 375 DVIIVD 380 (521)
T ss_pred CEEEEe
Confidence 999996
No 143
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0099 Score=55.45 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=34.8
Q ss_pred CCeEEEECCccchhhHH--Hhh-CCceEEEcccccccHHHHHHHHHc---C-CCeEEeeccccCCCCCCCcccceEec
Q 019228 254 VRTILDIGCGYGSFGAH--LFS-KELLTMCIANYEASGSQVQLTLER---G-LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~--Lae-r~V~~~sIa~~D~sea~Iq~A~eR---G-vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.++|||+|||||.|+.- ++. +.|+++ |+.+..++.+++. . ..+.+-..| .-..+..||.|+.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~v-----diD~~a~ei~r~N~~~l~g~v~f~~~d---v~~~~~~~dtvimN 115 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAV-----DIDPEALEIARANAEELLGDVEFVVAD---VSDFRGKFDTVIMN 115 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEE-----ecCHHHHHHHHHHHHhhCCceEEEEcc---hhhcCCccceEEEC
Confidence 35899999999977644 443 345554 4444455444332 1 122222222 33456667777765
No 144
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.44 E-value=0.0073 Score=58.59 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=58.1
Q ss_pred cCCCccc-cchhhHHHHHHHHhccccCccccc-CCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH
Q 019228 221 RSASLIF-DGVEDYSHQIAEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 221 pGggt~F-~g~~~yId~I~e~Lpl~~g~~w~~-~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e 296 (344)
=|.|.|| =..+ |+.+++... +..|.. ....++||||.|.|..+..|+.. .|.+ .+++.-|...-.+
T Consensus 65 LgRG~MFvfS~~----Q~~~LL~~~-~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~a-----TE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 65 LGRGSMFVFSEE----QFRKLLRIS-GFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYA-----TEASPPMRWRLSK 134 (265)
T ss_pred hcCCcEEEecHH----HHHHHhhhh-ccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEe-----ecCCHHHHHHHHh
Confidence 3566777 2334 344444432 112322 13468999999999999999774 4443 4677777766667
Q ss_pred cCCCeEEeeccccCCCCCCCcccceEecccc
Q 019228 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 297 RGvpa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
||..+.- .....=.+..||+|.|-++|
T Consensus 135 kg~~vl~----~~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 135 KGFTVLD----IDDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred CCCeEEe----hhhhhccCCceEEEeehhhh
Confidence 8875332 22233345689999999877
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.39 E-value=0.0084 Score=56.97 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=43.6
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccC-CCCCCCcccceE
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~r-LPFpD~SFDlVh 322 (344)
..++||+||||+|.++..++++.. ...+...|+++.+++.|++.- ..+.+...|+.. +.-.+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 356899999999999988876631 123455677777777776531 011111122211 222357999999
Q ss_pred ecc
Q 019228 323 CAR 325 (344)
Q Consensus 323 cs~ 325 (344)
+..
T Consensus 151 ~D~ 153 (270)
T TIGR00417 151 VDS 153 (270)
T ss_pred EeC
Confidence 864
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.38 E-value=0.0068 Score=60.08 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCeEEEECCccch-hhHHHhhCCceEEEcccccccHHHHHHHHHcC---------------CCeEEeeccc------cCC
Q 019228 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFAS------KQL 311 (344)
Q Consensus 254 ir~VLDVGCGtGs-faa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------------vpa~~~~lda------~rL 311 (344)
..+|||+|||-|. +.-+.. .++. .+.+.|++...|+.|.+|. ..+.+...|. ..+
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~-~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQK-AKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHH-TT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCeEEEecCCCchhHHHHHh-cCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 3589999999664 544444 3332 3445677777888887774 2222222222 134
Q ss_pred CCCCCcccceEecccccc
Q 019228 312 PYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 312 PFpD~SFDlVhcs~~Li~ 329 (344)
+.+...||+|-|..+++.
T Consensus 140 ~~~~~~FDvVScQFalHY 157 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHY 157 (331)
T ss_dssp SSTTS-EEEEEEES-GGG
T ss_pred cccCCCcceeehHHHHHH
Confidence 444569999999998854
No 147
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.37 E-value=0.015 Score=54.93 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=50.8
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH-----------------cCCCeEEeeccccCCCCC---
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP--- 314 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e-----------------RGvpa~~~~lda~rLPFp--- 314 (344)
.+||+.|||.|.-+.+|+++|.. +.+.|+++..++.+.+ ++..+.+-..|.-.|+..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 48999999999999999998753 3446777776665433 122222222334456542
Q ss_pred CCcccceEecccccccCcc
Q 019228 315 SLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 315 D~SFDlVhcs~~Li~W~~~ 333 (344)
-+.||+|.=..+++...++
T Consensus 122 ~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPND 140 (226)
T ss_pred cCCcCeeeeehhHhcCCHH
Confidence 2689999988888776543
No 148
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.36 E-value=0.0041 Score=54.61 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHcC----------CCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228 283 NYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 283 ~~D~sea~Iq~A~eRG----------vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
+.|+++.|++.|++|. +.+..+ |++.|||++++||+|+|..++.+|.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~--d~~~lp~~~~~fD~v~~~~~l~~~~ 58 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEG--DAIDLPFDDCEFDAVTMGYGLRNVV 58 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEe--chhhCCCCCCCeeEEEecchhhcCC
Confidence 4688999998886541 233444 5789999999999999998886664
No 149
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.25 E-value=0.011 Score=55.82 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=29.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
-+|-|+|||++.+|..+.. ..++.++..... .-.+..+++ .++|.+|++.|+|++..+|.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~-----------n~~Vtacdi--a~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAP-----------NPRVTACDI--ANVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEEESS-S-----------STTEEES-T--TS-S--TT-EEEEEEES---
T ss_pred EEEEECCCchHHHHHhccc-CceEEEeeccCC-----------CCCEEEecC--ccCcCCCCceeEEEEEhhhh
Confidence 4799999999999977653 333345332211 122455554 68999999999999987774
No 150
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.22 E-value=0.0069 Score=56.69 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCC-----CCCCccc
Q 019228 254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLP-----YPSLSFD 319 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLP-----FpD~SFD 319 (344)
.++|||||||+|.-+..|+.. ... ..+...|.++..++.|++. |+. +..+++ .+-|+ .++++||
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda-~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA-LSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHHhCCCCCCCC
Confidence 368999999999876666543 100 1233355666555555442 442 334432 11122 2357899
Q ss_pred ceEec
Q 019228 320 MLHCA 324 (344)
Q Consensus 320 lVhcs 324 (344)
+|+.-
T Consensus 147 ~VfiD 151 (234)
T PLN02781 147 FAFVD 151 (234)
T ss_pred EEEEC
Confidence 99875
No 151
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.10 E-value=0.016 Score=53.61 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred CeEEEECCccchhhHHHh--hCCceEEEcccccccHHHHHH-HHHcCCC---eEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLF--SKELLTMCIANYEASGSQVQL-TLERGLP---AMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~La--er~V~~~sIa~~D~sea~Iq~-A~eRGvp---a~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.+++|||||||+.+..++ .....++.|.........++. +..-|++ .+.++. .+-|+=.+ +||.|+...
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A-p~~L~~~~-~~daiFIGG 110 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA-PEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc-hHhhcCCC-CCCEEEECC
Confidence 589999999999998877 333333444333222223332 2223544 334442 23444222 899998764
No 152
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.05 E-value=0.015 Score=53.59 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=45.0
Q ss_pred CeEEEECCccc----hhhHHHhh--CCc--eEEEcccccccHHHHHHHHHc--------CCC------------------
Q 019228 255 RTILDIGCGYG----SFGAHLFS--KEL--LTMCIANYEASGSQVQLTLER--------GLP------------------ 300 (344)
Q Consensus 255 r~VLDVGCGtG----sfaa~Lae--r~V--~~~sIa~~D~sea~Iq~A~eR--------Gvp------------------ 300 (344)
-+|+.+||+|| |+|..|.+ .+. .-+.|.+.|+++..++.|++- ++|
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 37999999999 67777766 211 136778889999999888642 222
Q ss_pred -------eEEeeccccCCCCCCCcccceEecccccccCccc
Q 019228 301 -------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKG 334 (344)
Q Consensus 301 -------a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~ 334 (344)
+.+...+....+.+.+.||+|+|.++||.+++..
T Consensus 113 ~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~ 153 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET 153 (196)
T ss_dssp -HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH
T ss_pred ChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH
Confidence 1112222223455678999999999999987653
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.98 E-value=0.0078 Score=64.86 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=43.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----eEEeeccccC-CCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----AMIGSFASKQ-LPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a~~~~lda~r-LPFpD~SFDlVhcs 324 (344)
++|||+|||||.|+..++..+.. .+...|.++.+++.|++. ++. ++.++ +.. |.-..++||+|++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D--~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD--CLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc--HHHHHHHcCCCcCEEEEC
Confidence 58999999999999999887532 344567777777666542 342 23333 211 11115789999984
No 154
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.96 E-value=0.014 Score=56.38 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=64.6
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCce-EEEcccccccHHHHHHHHHcC------CCeEEeec
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLERG------LPAMIGSF 306 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~-~~sIa~~D~sea~Iq~A~eRG------vpa~~~~l 306 (344)
...+.++++.... ...+||.||||+|....-|++-+-. .+.+-..|.++..++..+++. +.+.+.++
T Consensus 58 ~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 58 LREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence 5567777775421 2337999999999888777764211 245566788888888776652 33455565
Q ss_pred cccC--CCCCCCcccceEecccccccCccc
Q 019228 307 ASKQ--LPYPSLSFDMLHCARCGVDWDQKG 334 (344)
Q Consensus 307 da~r--LPFpD~SFDlVhcs~~Li~W~~~~ 334 (344)
+... -|.+.+++|+|++..+|.--+++-
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek 161 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEK 161 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHH
Confidence 4444 478899999999999986555443
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.95 E-value=0.022 Score=50.80 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=40.2
Q ss_pred CccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCC
Q 019228 224 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGL 299 (344)
Q Consensus 224 gt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGv 299 (344)
...|+++....+.|.+....... .......+||++|||+|..+..++.. .|+..+... ....++.-.++.-
T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~--~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFN--PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNG 92 (173)
T ss_dssp -----HHHHHHHHHHH---------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT-
T ss_pred EEEechHHHHHHHHHHhcccccc--hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhcc
Confidence 35666665555555554210000 00112368999999999777666655 343333222 1122222222211
Q ss_pred -----CeEEeeccc---c-CCCCCCCcccceEecccccc
Q 019228 300 -----PAMIGSFAS---K-QLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 300 -----pa~~~~lda---~-rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+.+..++= . .-.+..+.||+|+++.|++.
T Consensus 93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD 131 (173)
T ss_dssp -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-
T ss_pred ccccccccCcEEEecCcccccccccccCCEEEEecccch
Confidence 112221110 0 01123468999999999975
No 156
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.91 E-value=0.013 Score=58.75 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=39.9
Q ss_pred CeEEEECCccchhhHHHhhCCc-eEEEcccccccHHHHHHHHHcCCC----eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERGLP----AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V-~~~sIa~~D~sea~Iq~A~eRGvp----a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
++|||||||||-++..-++.+. .++.+...++..-..+.+...++. ...+.+.--.|| -...|+|+|-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIvSE 134 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDIIVSE 134 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecC--ccceeEEeeh
Confidence 6899999999988877666542 233443444433333445445543 233332222455 8889999873
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.72 E-value=0.019 Score=51.73 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=45.0
Q ss_pred CeEEEECCccchhhH--HHhhCCce------EEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccc
Q 019228 255 RTILDIGCGYGSFGA--HLFSKELL------TMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDM 320 (344)
Q Consensus 255 r~VLDVGCGtGsfaa--~Laer~V~------~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDl 320 (344)
.++||-=||+|++.. .+...++. ...+.+.|.++.+++.|++. ++. +.+...|+.+||+++++||.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 479999999999973 33333433 11134567777776655542 443 34455578899999999999
Q ss_pred eEecccccccCc
Q 019228 321 LHCARCGVDWDQ 332 (344)
Q Consensus 321 Vhcs~~Li~W~~ 332 (344)
|+|. -+|-.
T Consensus 110 Ivtn---PPyG~ 118 (179)
T PF01170_consen 110 IVTN---PPYGR 118 (179)
T ss_dssp EEEE-----STT
T ss_pred EEEC---cchhh
Confidence 9996 35544
No 158
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.019 Score=55.48 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=51.2
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC-----CCeEE
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG-----LPAMI 303 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~ 303 (344)
...++.|.+.+...+ ...||.||+|.|.++..|+++. |+++. +++.+++.-.++- +.++.
T Consensus 16 ~~v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~~~v~aiE-----iD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 16 KNVIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERAARVTAIE-----IDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred HHHHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhcCeEEEEE-----eCHHHHHHHHHhcccccceEEEe
Confidence 334777777765432 2589999999999999999984 44444 4444444333331 33344
Q ss_pred eeccccCCCCCCC-cccceEec
Q 019228 304 GSFASKQLPYPSL-SFDMLHCA 324 (344)
Q Consensus 304 ~~lda~rLPFpD~-SFDlVhcs 324 (344)
+ |+...+|++. .++.|+++
T Consensus 83 ~--DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 83 G--DALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred C--chhcCcchhhcCCCEEEEc
Confidence 4 5677888876 67777765
No 159
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.70 E-value=0.039 Score=54.49 Aligned_cols=88 Identities=17% Similarity=0.310 Sum_probs=53.7
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----C----
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----G---- 298 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----G---- 298 (344)
..+.+.+.+.+.+... .|... ..+||+|||+|..+..|+.. ++ .+.+.|.+++.+..|.|. +
T Consensus 129 ETEE~V~~Vid~~~~~---~~~~~--~~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNS---EHSKH--THILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred cHHHHHHHHHHHHhhh---hhccc--ceEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 4566666666665421 22211 37999999999998887764 32 234467787777776653 1
Q ss_pred CCeEEeeccc---cCCCCCCCcccceEec
Q 019228 299 LPAMIGSFAS---KQLPYPSLSFDMLHCA 324 (344)
Q Consensus 299 vpa~~~~lda---~rLPFpD~SFDlVhcs 324 (344)
+.+...++.. ...|..++..|+++|+
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred eEEEecccccccccccccccCceeEEecC
Confidence 2222221211 2345678999999996
No 160
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.67 E-value=0.012 Score=59.65 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=40.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----eEEeeccccCC----CCCCCcccce
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----AMIGSFASKQL----PYPSLSFDML 321 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a~~~~lda~rL----PFpD~SFDlV 321 (344)
.+|||+|||||.|+...+..+. ..+...|.++.+++.|.+. ++. +..++ +... .-..++||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCCCEE
Confidence 5799999999999877555432 1334456777766665542 442 23333 2221 1235689999
Q ss_pred Eec
Q 019228 322 HCA 324 (344)
Q Consensus 322 hcs 324 (344)
++.
T Consensus 298 ilD 300 (396)
T PRK15128 298 VMD 300 (396)
T ss_pred EEC
Confidence 986
No 161
>PLN02672 methionine S-methyltransferase
Probab=95.28 E-value=0.015 Score=65.77 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=27.3
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~ 295 (344)
.+|||+|||+|.++..|+.+.-. ..+.+.|+++.+++.|+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAW 159 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHH
Confidence 47999999999999998875210 13344566666665553
No 162
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.28 E-value=0.025 Score=56.88 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----------CCeEE--eecc----ccCCCCCCC
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMI--GSFA----SKQLPYPSL 316 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~--~~ld----a~rLPFpD~ 316 (344)
+..+||+|||-|.=....-..++- .+.+.|+++..|+.|++|. .++.+ ++-. ...++|+|.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 457999999987443333333321 3344677777777787762 12322 2210 136899999
Q ss_pred cccceEeccccc
Q 019228 317 SFDMLHCARCGV 328 (344)
Q Consensus 317 SFDlVhcs~~Li 328 (344)
+||+|-|..|++
T Consensus 196 ~fDivScQF~~H 207 (389)
T KOG1975|consen 196 RFDIVSCQFAFH 207 (389)
T ss_pred CcceeeeeeeEe
Confidence 999999999984
No 163
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.049 Score=56.01 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=58.9
Q ss_pred cceeeecCCCccc--c--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccH
Q 019228 215 EEQISFRSASLIF--D--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASG 288 (344)
Q Consensus 215 g~~~~FpGggt~F--~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~se 288 (344)
+..+.|+.. .|| | .++..++.+.+.+...+ ..++||+=||.|+|+..|+.+ .|+++.+.+..+..
T Consensus 260 ~~~~~~~~~-sF~Q~N~~~~ekl~~~a~~~~~~~~--------~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~ 330 (432)
T COG2265 260 GVSFQISPR-SFFQVNPAVAEKLYETALEWLELAG--------GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEA 330 (432)
T ss_pred ceEEEeCCC-CceecCHHHHHHHHHHHHHHHhhcC--------CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHH
Confidence 445555443 677 3 44555666666665422 357999999999999999976 56665555444333
Q ss_pred HHHHHHHHcCCC-eEEeeccccCCCCC---CCcccceEe
Q 019228 289 SQVQLTLERGLP-AMIGSFASKQLPYP---SLSFDMLHC 323 (344)
Q Consensus 289 a~Iq~A~eRGvp-a~~~~lda~rLPFp---D~SFDlVhc 323 (344)
++ +.|+..++. +.+...++++..-. ...||+|+-
T Consensus 331 A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 331 AQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred HH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 32 233344554 44444455554333 357888875
No 164
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.20 E-value=0.007 Score=59.38 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=49.4
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
..+||+|||.|.+...- ....+.+.|.+...+..|+..|.. .....|+..+||++.+||.+++..+++||..
T Consensus 47 sv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred ceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 47999999999664321 112345567776665556555542 2233467899999999999999998877754
No 165
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.19 E-value=0.051 Score=52.21 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc--CCCeEE----
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER--GLPAMI---- 303 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~---- 303 (344)
...+++|.+.++. | ..++|||+|||+|+-.....+. + ....+...|.++.|+++++.- ..+...
T Consensus 19 ~~vl~El~~r~p~-----f---~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~ 89 (274)
T PF09243_consen 19 YRVLSELRKRLPD-----F---RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW 89 (274)
T ss_pred HHHHHHHHHhCcC-----C---CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchh
Confidence 3445566665541 2 3568999999999654433332 2 123455678888888766542 221110
Q ss_pred -eeccccCCCCCCCcccceEecccccccCc
Q 019228 304 -GSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 304 -~~lda~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
..+-...+++... |+|+++.+|-+-..
T Consensus 90 ~~~~~~~~~~~~~~--DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 90 RRVLYRDFLPFPPD--DLVIASYVLNELPS 117 (274)
T ss_pred hhhhhcccccCCCC--cEEEEehhhhcCCc
Confidence 1111223444444 99999999976654
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.14 E-value=0.062 Score=48.84 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=27.7
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~ 295 (344)
.++||++||+|.++..++.++.. .+...|.++..++.++
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLK 89 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHH
Confidence 47999999999999999998642 2344555555554443
No 167
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.10 E-value=0.025 Score=55.51 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=52.3
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CCCeEEeeccc
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFAS 308 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~~~~lda 308 (344)
++.+.+.+...++ .++||.+||.|..+..+++..-....+.+.|.++.+++.|.++ .+.++.+++..
T Consensus 8 l~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 4555555543332 4899999999999999988621012455678888888888765 23344444321
Q ss_pred c--CCCCCCCcccceEeccccc
Q 019228 309 K--QLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 309 ~--rLPFpD~SFDlVhcs~~Li 328 (344)
. .++-.-.+||.|++-.-..
T Consensus 80 l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHHcCCCccCEEEECCCcc
Confidence 1 1111112799988764443
No 168
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.07 E-value=0.047 Score=54.23 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=35.8
Q ss_pred CCccc--c--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHH
Q 019228 223 ASLIF--D--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTL 295 (344)
Q Consensus 223 ggt~F--~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~ 295 (344)
-+.|| | .+...++.+.++++..+ ..+||+=||+|+|+..|++. .|+++ +..+.+++.|+
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~---------~~vlDlycG~G~fsl~la~~~~~V~gv-----E~~~~av~~A~ 235 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSK---------GDVLDLYCGVGTFSLPLAKKAKKVIGV-----EIVEEAVEDAR 235 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-T---------TEEEEES-TTTCCHHHHHCCSSEEEEE-----ES-HHHHHHHH
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCC---------CcEEEEeecCCHHHHHHHhhCCeEEEe-----eCCHHHHHHHH
Confidence 34677 3 44556777777776432 26999999999999999986 34443 44455554443
No 169
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.96 E-value=0.04 Score=50.48 Aligned_cols=76 Identities=25% Similarity=0.402 Sum_probs=40.6
Q ss_pred eEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCCCe-EEeeccccC-C--CCCCCcccceEecccc
Q 019228 256 TILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGLPA-MIGSFASKQ-L--PYPSLSFDMLHCARCG 327 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGvpa-~~~~lda~r-L--PFpD~SFDlVhcs~~L 327 (344)
.+||||||.|.|...++.+ +++++.+...-+..+ .+.+.+++++. .+-..|+.. | =++++++|.|+... -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-P 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-P 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-C
Confidence 8999999999999998875 344444333222222 23344446542 222224444 2 35679999999864 3
Q ss_pred cccCcc
Q 019228 328 VDWDQK 333 (344)
Q Consensus 328 i~W~~~ 333 (344)
.+|...
T Consensus 98 DPWpK~ 103 (195)
T PF02390_consen 98 DPWPKK 103 (195)
T ss_dssp ----SG
T ss_pred CCCccc
Confidence 477654
No 170
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.96 E-value=0.045 Score=53.74 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=38.4
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~ 329 (344)
.+|-|+|||.+-+|..- ...|.-+++.+.+ +| ++.++| .++|.+|+|.|+|++..+|..
T Consensus 182 ~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~----------~~---V~~cDm--~~vPl~d~svDvaV~CLSLMg 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSE-RHKVHSFDLVAVN----------ER---VIACDM--RNVPLEDESVDVAVFCLSLMG 240 (325)
T ss_pred eEEEecccchhhhhhcc-ccceeeeeeecCC----------Cc---eeeccc--cCCcCccCcccEEEeeHhhhc
Confidence 47999999999887611 1244433332221 22 344554 579999999999998777643
No 171
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.94 E-value=0.056 Score=52.84 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=51.7
Q ss_pred eEEEECCccc----hhhHHHhhCC-c--eEEEcccccccHHHHHHHHHc--------CCC------------------e-
Q 019228 256 TILDIGCGYG----SFGAHLFSKE-L--LTMCIANYEASGSQVQLTLER--------GLP------------------A- 301 (344)
Q Consensus 256 ~VLDVGCGtG----sfaa~Laer~-V--~~~sIa~~D~sea~Iq~A~eR--------Gvp------------------a- 301 (344)
+|+.+||.|| ++|..|.+.. . .-+.|.+.|+++..++.|++- ++| .
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~ 197 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR 197 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence 7999999999 6666666631 1 124677789999888888642 111 0
Q ss_pred ---------EEeeccccCCCCC-CCcccceEecccccccCcc
Q 019228 302 ---------MIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 302 ---------~~~~lda~rLPFp-D~SFDlVhcs~~Li~W~~~ 333 (344)
.+...+....||+ .+.||+|+|.++++++...
T Consensus 198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~ 239 (287)
T PRK10611 198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT 239 (287)
T ss_pred EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence 1111222233554 6889999999999998664
No 172
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.79 E-value=0.066 Score=53.22 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
....++.+.+.+... . .++||++||+|.|+..|++... .+.+.|.++.+++.|++
T Consensus 183 ~~~l~~~v~~~~~~~--------~-~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 183 NIKMLEWACEVTQGS--------K-GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQY 237 (353)
T ss_pred HHHHHHHHHHHhhcC--------C-CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHH
Confidence 344566666655321 1 2599999999999998877521 34445666677666654
No 173
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.78 E-value=0.053 Score=51.31 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=48.4
Q ss_pred CeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCC-CeEEeeccccCC---CCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQL---PYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGv-pa~~~~lda~rL---PFpD~SFDlVhcs~~ 326 (344)
.++|+||||.|.|...++++ +++++.+-..-+.. .++.+.+.++ .+.+-..|+..+ =++++|.|-|+-..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~-~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK-ALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH-HHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 47999999999999999987 33444333222222 2355666788 554443344332 34566999998864
Q ss_pred ccccCcc
Q 019228 327 GVDWDQK 333 (344)
Q Consensus 327 Li~W~~~ 333 (344)
-.+|+..
T Consensus 128 PDPWpKk 134 (227)
T COG0220 128 PDPWPKK 134 (227)
T ss_pred CCCCCCc
Confidence 3488754
No 174
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.062 Score=54.06 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=47.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-e-EEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-A-MIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a-~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..+||==||||++.. +.+..+..+.+.|+.+.|++-|+.. ++. . .+...|+..|||++++||.|.|-
T Consensus 199 ~~vlDPFcGTGgiLi---Eagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 199 ELVLDPFCGTGGILI---EAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred CEeecCcCCccHHHH---hhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 479999999998854 3333334445578888888776532 232 2 22333899999999999999984
No 175
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.52 E-value=0.053 Score=46.61 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=26.7
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae 273 (344)
.+..+...|.+++..-. ......+|+|+|||-|.++..|+.
T Consensus 5 Ei~~~~~~i~~~~~~~~----~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVG----ESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHHhh----ccCCCCEEEEeCCChhHHHHHHHH
Confidence 34455555555554200 012356899999999999998887
No 176
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.40 E-value=0.26 Score=49.91 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=38.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~ 325 (344)
.++||+||.+|.|+..|++++..++.|....+++. ......+....++ +-+..-+.+.+|.|+|=-
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~---L~~~~~V~h~~~d--~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS---LMDTGQVEHLRAD--GFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh---hhCCCCEEEEecc--CcccCCCCCCCCEEEEec
Confidence 58999999999999999999854444432222211 1111122222232 323221267899999953
No 177
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.092 Score=55.30 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=48.5
Q ss_pred eeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHH
Q 019228 217 QISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQ 290 (344)
Q Consensus 217 ~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~ 290 (344)
+|+|+ -+.||. .++..+..|.++..+..+ ..+|||-||||+++..|+++ .|+++.+.+.++..|.
T Consensus 352 tF~iS-p~AFFQ~Nt~~aevLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 352 TFRIS-PGAFFQTNTSAAEVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred EEEEC-CchhhccCcHHHHHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 55565 356883 344446666666655432 57999999999999999986 5667666666655554
Q ss_pred HHHHHHcCCC
Q 019228 291 VQLTLERGLP 300 (344)
Q Consensus 291 Iq~A~eRGvp 300 (344)
. -|+..|+.
T Consensus 423 ~-nA~~Ngis 431 (534)
T KOG2187|consen 423 K-NAQINGIS 431 (534)
T ss_pred h-cchhcCcc
Confidence 2 34455654
No 178
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.28 E-value=0.045 Score=54.92 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH---cCCCeEEeeccccCCCCCCCcccceEecccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e---RGvpa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+..++|+|.|+|..+..++.+ .+.++. .....+-.+++ .|+.-+.+++ -+.+|=.| +|++-.||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~in-----fdlp~v~~~a~~~~~gV~~v~gdm-fq~~P~~d----aI~mkWiL 246 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGIN-----FDLPFVLAAAPYLAPGVEHVAGDM-FQDTPKGD----AIWMKWIL 246 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceee-----cCHHHHHhhhhhhcCCcceecccc-cccCCCcC----eEEEEeec
Confidence 3678999999999999888774 343333 33333322222 2355566665 34466655 99999999
Q ss_pred cccCcccccc
Q 019228 328 VDWDQKGKCQ 337 (344)
Q Consensus 328 i~W~~~~g~~ 337 (344)
++|++.|=+|
T Consensus 247 hdwtDedcvk 256 (342)
T KOG3178|consen 247 HDWTDEDCVK 256 (342)
T ss_pred ccCChHHHHH
Confidence 9999887443
No 179
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.27 E-value=0.079 Score=52.79 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=38.3
Q ss_pred Ccccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 224 SLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 224 gt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
+.||. ..+..++.+.+.+... ..++||++||+|.|+..|+...- .+.+.|.++.+++.|++
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~---------~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGS---------KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQY 246 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcC---------CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHH
Confidence 45773 2344555555555321 13699999999999998877521 33445666667666554
No 180
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.27 E-value=0.12 Score=48.56 Aligned_cols=87 Identities=15% Similarity=0.244 Sum_probs=51.7
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHH---HHH-HHHcCCC----eE
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ---VQL-TLERGLP----AM 302 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~---Iq~-A~eRGvp----a~ 302 (344)
+..++.|.+.++.. ..+||.||||||--+.+++++=- .+...+.|..+.. |+. +.+.+++ .+
T Consensus 12 ~pIl~vL~~~l~~~---------~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~ 81 (204)
T PF06080_consen 12 DPILEVLKQYLPDS---------GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL 81 (204)
T ss_pred hHHHHHHHHHhCcc---------CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe
Confidence 44567777777632 12599999999998888887611 1245666766554 221 2233432 22
Q ss_pred EeeccccCCC------CCCCcccceEecccc
Q 019228 303 IGSFASKQLP------YPSLSFDMLHCARCG 327 (344)
Q Consensus 303 ~~~lda~rLP------FpD~SFDlVhcs~~L 327 (344)
.-++....-| +..++||+|+|+..+
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~l 112 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINML 112 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHH
Confidence 2232222122 345699999999887
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.25 E-value=0.082 Score=49.40 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=48.0
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH-HcCCC------------------eEEeeccccCCCCCC
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLP------------------AMIGSFASKQLPYPS 315 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~-eRGvp------------------a~~~~lda~rLPFpD 315 (344)
.+||+.|||.|.-+.+|++++. .+.+.|+++..++.|. ++++. ++.++ --.++-.+
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD--fF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD--FFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES---TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc--cccCChhh
Confidence 4899999999999999999974 4556788888887763 44431 12233 23444333
Q ss_pred -CcccceEecccccccCc
Q 019228 316 -LSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 316 -~SFDlVhcs~~Li~W~~ 332 (344)
+.||+|+=..+++-..+
T Consensus 114 ~g~fD~iyDr~~l~Alpp 131 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPP 131 (218)
T ss_dssp HHSEEEEEECSSTTTS-G
T ss_pred cCCceEEEEecccccCCH
Confidence 47999998777755443
No 182
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.10 E-value=0.22 Score=49.24 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=39.1
Q ss_pred CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHc--CCC------eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER--GLP------AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eR--Gvp------a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..||.||-|||.++..|++.+ |.++.+.+. |+..-.+| |.| ++++++-...+| .||.++++
T Consensus 60 D~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr-----mvael~krv~gtp~~~kLqV~~gD~lK~d~P----~fd~cVsN 130 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR-----MVAELEKRVQGTPKSGKLQVLHGDFLKTDLP----RFDGCVSN 130 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH-----HHHHHHHHhcCCCccceeeEEecccccCCCc----ccceeecc
Confidence 589999999999999999975 444444444 44433344 444 445543233334 48888875
No 183
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.85 E-value=0.13 Score=48.85 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEeccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
...++||.|+|.|-.+..|+-.-...+ ...+..+..++.|.+.- +.-.+. ...+..--+.+.||+|+|.-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~V--DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~-~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEV--DLVEPVEKFLEQAKEYLGKDNPRVGEFYC-VGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEE--EEEES-HHHHHHHHHHTCCGGCCEEEEEE-S-GGG----TT-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHhcCEe--EEeccCHHHHHHHHHHhcccCCCcceEEe-cCHhhccCCCCcEeEEEehHh
Confidence 356899999999999987765433322 33566777777777431 111222 234444444679999999999
Q ss_pred ccccCcccccc
Q 019228 327 GVDWDQKGKCQ 337 (344)
Q Consensus 327 Li~W~~~~g~~ 337 (344)
+.|-+..|=++
T Consensus 132 lghLTD~dlv~ 142 (218)
T PF05891_consen 132 LGHLTDEDLVA 142 (218)
T ss_dssp GGGS-HHHHHH
T ss_pred hccCCHHHHHH
Confidence 98888766443
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.92 E-value=0.14 Score=53.38 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=47.2
Q ss_pred CCCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCCCeE-Eeecccc--CCCCCCCcccceEecc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASK--QLPYPSLSFDMLHCAR 325 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGvpa~-~~~lda~--rLPFpD~SFDlVhcs~ 325 (344)
....+||||||.|.|...++.. +++++.+...-+..+ +..+.++++... +...++. .--|+++++|.|+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~-~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANV-LKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHH-HHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999876 444544433222221 233444565422 1111222 1238899999999964
Q ss_pred cccccCcc
Q 019228 326 CGVDWDQK 333 (344)
Q Consensus 326 ~Li~W~~~ 333 (344)
-.+|...
T Consensus 426 -PDPWpKk 432 (506)
T PRK01544 426 -PDPWIKN 432 (506)
T ss_pred -CCCCCCC
Confidence 4588653
No 185
>PLN02476 O-methyltransferase
Probab=92.90 E-value=0.11 Score=50.67 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCCC----eEEeeccccCCCC-----CCCc
Q 019228 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGLP----AMIGSFASKQLPY-----PSLS 317 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGvp----a~~~~lda~rLPF-----pD~S 317 (344)
.++||+|||++|..+.+|+.. +.. +...|..+...+.|++ .|+. +..+++ .+-||- .+++
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA-~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA-AESLKSMIQNGEGSS 194 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHHHHHhcccCCC
Confidence 468999999999999888763 211 2223444444444433 3543 334432 122221 2468
Q ss_pred ccceEec
Q 019228 318 FDMLHCA 324 (344)
Q Consensus 318 FDlVhcs 324 (344)
||+|+.-
T Consensus 195 FD~VFID 201 (278)
T PLN02476 195 YDFAFVD 201 (278)
T ss_pred CCEEEEC
Confidence 9999864
No 186
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.83 E-value=0.11 Score=43.42 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.3
Q ss_pred eEEEECCccchhhHHHhhCC
Q 019228 256 TILDIGCGYGSFGAHLFSKE 275 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~ 275 (344)
++||||||+|.++..+++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~ 20 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG 20 (143)
T ss_pred CEEEccCCccHHHHHHHHhC
Confidence 48999999999999888763
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.4 Score=45.89 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=41.5
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----------------C-CCeEEeeccccCCCCCCC
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----------------G-LPAMIGSFASKQLPYPSL 316 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----------------G-vpa~~~~lda~rLPFpD~ 316 (344)
-..||||.|+|.+++.++.. +.++....+.+..++.|+.+.+. + +.+. +.|.+..--+.+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv--vGDgr~g~~e~a 161 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV--VGDGRKGYAEQA 161 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE--eCCccccCCccC
Confidence 36999999999888765532 11111113344444444443321 2 2233 345666666678
Q ss_pred cccceEecccc
Q 019228 317 SFDMLHCARCG 327 (344)
Q Consensus 317 SFDlVhcs~~L 327 (344)
.||.|||....
T Consensus 162 ~YDaIhvGAaa 172 (237)
T KOG1661|consen 162 PYDAIHVGAAA 172 (237)
T ss_pred CcceEEEccCc
Confidence 99999998654
No 188
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.36 E-value=0.51 Score=44.72 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHc-----CCCeE
Q 019228 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER-----GLPAM 302 (344)
Q Consensus 230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~ 302 (344)
....++.|.+.+.... ...|||||.|+|.++..|+++. ++++ +.++...+.-.++ .+.++
T Consensus 15 ~~~~~~~Iv~~~~~~~--------~~~VlEiGpG~G~lT~~L~~~~~~v~~v-----E~d~~~~~~L~~~~~~~~~~~vi 81 (262)
T PF00398_consen 15 DPNIADKIVDALDLSE--------GDTVLEIGPGPGALTRELLKRGKRVIAV-----EIDPDLAKHLKERFASNPNVEVI 81 (262)
T ss_dssp HHHHHHHHHHHHTCGT--------TSEEEEESSTTSCCHHHHHHHSSEEEEE-----ESSHHHHHHHHHHCTTCSSEEEE
T ss_pred CHHHHHHHHHhcCCCC--------CCEEEEeCCCCccchhhHhcccCcceee-----cCcHhHHHHHHHHhhhcccceee
Confidence 3566888888887543 2589999999999999998864 4443 4445555554443 12233
Q ss_pred EeeccccCCCCCC---CcccceEe
Q 019228 303 IGSFASKQLPYPS---LSFDMLHC 323 (344)
Q Consensus 303 ~~~lda~rLPFpD---~SFDlVhc 323 (344)
.+ |+..+.+++ +.-..|++
T Consensus 82 ~~--D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 82 NG--DFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp ES---TTTSCGGGHCSSSEEEEEE
T ss_pred ec--chhccccHHhhcCCceEEEE
Confidence 44 455565555 34444554
No 189
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.33 E-value=0.33 Score=47.19 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=53.4
Q ss_pred CeEEEECCccc----hhhHHHhhCCce----EEEcccccccHHHHHHHHHc---------CCCe-----EE--e------
Q 019228 255 RTILDIGCGYG----SFGAHLFSKELL----TMCIANYEASGSQVQLTLER---------GLPA-----MI--G------ 304 (344)
Q Consensus 255 r~VLDVGCGtG----sfaa~Laer~V~----~~sIa~~D~sea~Iq~A~eR---------Gvpa-----~~--~------ 304 (344)
-+|.=+||+|| |+|..|.+.... .+.|.+.|++...++.|.+- +++. ++ +
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 47999999999 677777765432 46788889999888887631 2221 01 0
Q ss_pred ---------eccccCC---CCCCCcccceEecccccccCcccc
Q 019228 305 ---------SFASKQL---PYPSLSFDMLHCARCGVDWDQKGK 335 (344)
Q Consensus 305 ---------~lda~rL---PFpD~SFDlVhcs~~Li~W~~~~g 335 (344)
.+.-++| ++..+-||+|+|.++||.+....-
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q 220 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ 220 (268)
T ss_pred EChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH
Confidence 0011122 225577999999999999877543
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.26 E-value=0.26 Score=47.15 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC------CceEEEcccccccHHHHHHHHH
Q 019228 223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer------~V~~~sIa~~D~sea~Iq~A~e 296 (344)
.|.+|.- ....+.+.+++.... ..+|||-.||+|.|.....++ ......+.+.|+.+..+..|.-
T Consensus 25 ~G~~~TP-~~i~~l~~~~~~~~~--------~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~ 95 (311)
T PF02384_consen 25 LGQFYTP-REIVDLMVKLLNPKK--------GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL 95 (311)
T ss_dssp CGGC----HHHHHHHHHHHTT-T--------TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH
T ss_pred cceeehH-HHHHHHHHhhhhccc--------cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh
Confidence 3445532 334566777775432 247999999999997765541 0112345556666666555542
Q ss_pred ----cCCC-----eEEeeccccCCCCC--CCcccceEecccccccCcc
Q 019228 297 ----RGLP-----AMIGSFASKQLPYP--SLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 297 ----RGvp-----a~~~~lda~rLPFp--D~SFDlVhcs~~Li~W~~~ 333 (344)
+++. ...++ +-..+.. ...||+|++. -+|...
T Consensus 96 nl~l~~~~~~~~~i~~~d--~l~~~~~~~~~~~D~ii~N---PPf~~~ 138 (311)
T PF02384_consen 96 NLLLHGIDNSNINIIQGD--SLENDKFIKNQKFDVIIGN---PPFGSK 138 (311)
T ss_dssp HHHHTTHHCBGCEEEES---TTTSHSCTST--EEEEEEE-----CTCE
T ss_pred hhhhhccccccccccccc--cccccccccccccccccCC---CCcccc
Confidence 2321 23333 3223332 5899999996 355544
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=92.21 E-value=0.28 Score=43.16 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCeEEEECCccchhhHHHhhCC-----ceEEEcccc
Q 019228 254 VRTILDIGCGYGSFGAHLFSKE-----LLTMCIANY 284 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~ 284 (344)
..++||+||++|.|+.+++++. |.++++.+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4689999999999999999886 344554443
No 192
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=92.18 E-value=0.41 Score=46.51 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeecc
Q 019228 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFA 307 (344)
Q Consensus 235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~ld 307 (344)
-.|...+.+..| .+|||+|.|+|.++++|+.. +-.+ .+...+..++..+.|++. ++. +.+..-|
T Consensus 84 ~~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 84 GYIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred HHHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 345666655443 58999999999999999852 1111 223356666666666643 321 2222234
Q ss_pred ccCCCCCCCcccceEecccccccCc
Q 019228 308 SKQLPYPSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 308 a~rLPFpD~SFDlVhcs~~Li~W~~ 332 (344)
....-+++ .||+|+- ...-+|.-
T Consensus 155 v~~~~~~~-~vDav~L-Dmp~PW~~ 177 (256)
T COG2519 155 VREGIDEE-DVDAVFL-DLPDPWNV 177 (256)
T ss_pred cccccccc-ccCEEEE-cCCChHHH
Confidence 44444555 9999987 44566754
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.15 E-value=0.12 Score=52.13 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=41.6
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+|||++||+|.++..++.. ++ ..+...|.++..++.+++ .++. ..+...|+..+....+.||+|..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 37999999999999998654 42 134446777766665543 2443 112223444432214679999874
No 194
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=91.81 E-value=0.12 Score=49.58 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=59.4
Q ss_pred ecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC
Q 019228 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299 (344)
Q Consensus 220 FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv 299 (344)
|-|.|.||- .--+++++++..++ -.|.+.. .++||+|.|.|..+.+++..-- .+-...++..|...-+.++.
T Consensus 84 ~lgrGsMFi---fSe~QF~klL~i~~-p~w~~~~-~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~y 155 (288)
T KOG3987|consen 84 FLGRGSMFI---FSEEQFRKLLVIGG-PAWGQEP-VTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNY 155 (288)
T ss_pred ccccCceEE---ecHHHHHHHHhcCC-CccCCCC-eeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCC
Confidence 556677772 12356777777653 3676543 4799999999999988876411 12335677778766666654
Q ss_pred CeEEeeccccCCCCCCCcccceEecccc
Q 019228 300 PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (344)
Q Consensus 300 pa~~~~lda~rLPFpD~SFDlVhcs~~L 327 (344)
.+ ++.++-.+ -|=.||+|.|-..|
T Consensus 156 nV-l~~~ew~~---t~~k~dli~clNlL 179 (288)
T KOG3987|consen 156 NV-LTEIEWLQ---TDVKLDLILCLNLL 179 (288)
T ss_pred ce-eeehhhhh---cCceeehHHHHHHH
Confidence 33 22222221 23358999997665
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=91.81 E-value=0.48 Score=49.04 Aligned_cols=67 Identities=13% Similarity=0.374 Sum_probs=32.1
Q ss_pred CeEEEECCccchhhHHHhhC------CceEEEcccccccHHHH-HHHHHcC----CCeEEeeccccCCCCCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQV-QLTLERG----LPAMIGSFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer------~V~~~sIa~~D~sea~I-q~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhc 323 (344)
.+|||||||+|-+...-++. .+.+..+.........+ +...+.+ |.++.+++ +.+..|. ..|+|+|
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~--r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM--REVELPE-KVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T--TTSCHSS--EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc--cCCCCCC-ceeEEEE
Confidence 57999999999886544332 12333333322211111 1222333 34455654 4554444 8999998
Q ss_pred c
Q 019228 324 A 324 (344)
Q Consensus 324 s 324 (344)
-
T Consensus 265 E 265 (448)
T PF05185_consen 265 E 265 (448)
T ss_dssp -
T ss_pred e
Confidence 5
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=91.75 E-value=0.34 Score=45.04 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=49.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--CCCeEEeeccccCC-----CCCCCcccceEecccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~~~lda~rL-----PFpD~SFDlVhcs~~L 327 (344)
--||.+|-|||-++..++++++.--++.....+.+.+..-.++ ++.++-+ |+..| .+.+.-||.|+|.-=+
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~g--da~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIING--DAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcccccc--chhhHHHHHhhcCCCeeeeEEecccc
Confidence 3699999999999999999877655666667777665444343 2333333 23333 4788999999997544
Q ss_pred cc
Q 019228 328 VD 329 (344)
Q Consensus 328 i~ 329 (344)
..
T Consensus 128 l~ 129 (194)
T COG3963 128 LN 129 (194)
T ss_pred cc
Confidence 33
No 197
>PLN02823 spermine synthase
Probab=91.62 E-value=0.49 Score=47.23 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=46.3
Q ss_pred CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-----------CCeEEeeccccCCCCCCCcccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFASKQLPYPSLSFDM 320 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~~~lda~rLPFpD~SFDl 320 (344)
..++||-||+|.|..+..+++. .+ ..+...+++++.++.|++.- +.+.++|. .+-|.-.+++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da-~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA-RAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh-HHHHhhCCCCccE
Confidence 4578999999999999888775 33 24455688888888887541 11233332 1223445688999
Q ss_pred eEec
Q 019228 321 LHCA 324 (344)
Q Consensus 321 Vhcs 324 (344)
|++-
T Consensus 180 Ii~D 183 (336)
T PLN02823 180 IIGD 183 (336)
T ss_pred EEec
Confidence 9985
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=91.57 E-value=0.82 Score=42.52 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=48.0
Q ss_pred ccccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh--CCceEEEcccccccH
Q 019228 212 MLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS--KELLTMCIANYEASG 288 (344)
Q Consensus 212 ~~eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~se 288 (344)
.+.|=.+.+.-.-.||+ +...--.+|.+.+. + ..+|||+-||.|.|+..++. +...++. .|..+
T Consensus 69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~--------~e~VlD~faGIG~f~l~~ak~~~~~~V~A---~d~Np 135 (200)
T PF02475_consen 69 KENGIRFKVDLSKVYFSPRLSTERRRIANLVK--P--------GEVVLDMFAGIGPFSLPIAKHGKAKRVYA---VDLNP 135 (200)
T ss_dssp EETTEEEEEETTTS---GGGHHHHHHHHTC----T--------T-EEEETT-TTTTTHHHHHHHT-SSEEEE---EES-H
T ss_pred EeCCEEEEEccceEEEccccHHHHHHHHhcCC--c--------ceEEEEccCCccHHHHHHhhhcCccEEEE---ecCCH
Confidence 44555555555557884 54444455655543 2 25899999999999999887 4433333 33333
Q ss_pred HHHH----HHHHcCCC--eEEeeccccCCCCCCCcccceEec
Q 019228 289 SQVQ----LTLERGLP--AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 289 a~Iq----~A~eRGvp--a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..++ .+..-++. +..-..|+..++- .+.||-|++.
T Consensus 136 ~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 136 DAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp HHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 3322 22222332 2222345655544 8999988886
No 199
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.29 E-value=0.33 Score=49.55 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.8
Q ss_pred CCCCCCCcccceEecccccccCcc
Q 019228 310 QLPYPSLSFDMLHCARCGVDWDQK 333 (344)
Q Consensus 310 rLPFpD~SFDlVhcs~~Li~W~~~ 333 (344)
|| ||++|.+++||+.+| ||...
T Consensus 156 RL-fP~~Slh~~~Ss~sl-HWLS~ 177 (386)
T PLN02668 156 RL-FPARSIDVFHSAFSL-HWLSQ 177 (386)
T ss_pred cc-cCCCceEEEEeeccc-eeccc
Confidence 44 999999999999999 99885
No 200
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=90.55 E-value=0.51 Score=45.31 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEe
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIG 304 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~ 304 (344)
+..|..++.+.+| .+||+.|.|+|+++..|+.. +-.+ .+...+.++...+.|++. |+. +...
T Consensus 29 ~~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~ 99 (247)
T PF08704_consen 29 ISYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHR 99 (247)
T ss_dssp HHHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred HHHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence 5567777776655 58999999999999988863 1111 223367788777777653 443 3344
Q ss_pred eccccCCCCC---CCcccceEecccccccCc
Q 019228 305 SFASKQLPYP---SLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 305 ~lda~rLPFp---D~SFDlVhcs~~Li~W~~ 332 (344)
++ ..-.|+ ++.||.|+- ..--+|..
T Consensus 100 Dv--~~~g~~~~~~~~~DavfL-Dlp~Pw~~ 127 (247)
T PF08704_consen 100 DV--CEEGFDEELESDFDAVFL-DLPDPWEA 127 (247)
T ss_dssp -G--GCG--STT-TTSEEEEEE-ESSSGGGG
T ss_pred ce--ecccccccccCcccEEEE-eCCCHHHH
Confidence 43 333443 378999987 45567754
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.85 E-value=0.31 Score=44.51 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=38.5
Q ss_pred CeEEEECCccchhh--HHHhhC-CceEEEcccccccHHHHHHHH----HcC--CCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFG--AHLFSK-ELLTMCIANYEASGSQVQLTL----ERG--LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfa--a~Laer-~V~~~sIa~~D~sea~Iq~A~----eRG--vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+++|+|||.|.+. ..+.+. -|.+ .|+.++.++.+. |-. +...++++ ..+-+..+.||.++..
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~e~vlG-----fDIdpeALEIf~rNaeEfEvqidlLqcdi--ldle~~~g~fDtaviN 121 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKNESVLG-----FDIDPEALEIFTRNAEEFEVQIDLLQCDI--LDLELKGGIFDTAVIN 121 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCCceEEe-----eecCHHHHHHHhhchHHhhhhhheeeeec--cchhccCCeEeeEEec
Confidence 57999999999665 333332 3444 455555554433 222 33455554 4667777999988765
No 202
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=89.83 E-value=0.42 Score=49.58 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=30.3
Q ss_pred CeEEEECCccchhhHHHhhCC-------ceEEEcccccccHHHHHHHHHc
Q 019228 255 RTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~-------V~~~sIa~~D~sea~Iq~A~eR 297 (344)
.+|||.+||+|.|...++++. .....+.+.|+++..+..+...
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 479999999999987765431 0125667788888777766543
No 203
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=87.90 E-value=1.5 Score=43.61 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=57.1
Q ss_pred HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEee
Q 019228 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGS 305 (344)
Q Consensus 234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~ 305 (344)
|.+|..++....| .+||..|.|.|++.-+++..-..+-.+-..|+|+...+.|+|. |++ +.+.+
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 6778888876655 5899999999999988876521111334467788777667653 443 34444
Q ss_pred ccccCCCCCCCcccceEecccccccC
Q 019228 306 FASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 306 lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
+-..-.+-.+..+|.|+-- ..-+|.
T Consensus 166 Vc~~GF~~ks~~aDaVFLD-lPaPw~ 190 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLD-LPAPWE 190 (314)
T ss_pred cccCCccccccccceEEEc-CCChhh
Confidence 3322333346889999873 445664
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=87.82 E-value=1.1 Score=41.05 Aligned_cols=67 Identities=28% Similarity=0.368 Sum_probs=37.6
Q ss_pred eEEEECCccchhhHHHhh--CCceEEEcccccccHHHHH----HHHHcCCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228 256 TILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQ----LTLERGLP-AMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq----~A~eRGvp-a~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
++||||+|-|.-|.-|+= .+.. +...|.....+. .+.+-+++ +.+-...++. +-...+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence 799999999987766542 2222 223344443332 23344665 3222223344 678899999999754
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.59 E-value=1.3 Score=47.99 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=29.3
Q ss_pred EcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCC--CCcccceEec
Q 019228 280 CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYP--SLSFDMLHCA 324 (344)
Q Consensus 280 sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFp--D~SFDlVhcs 324 (344)
.+.+.|+++.+++.|++. |+. +.+...|..+++.+ .++||+|+|+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 467788888888777653 553 22333345566555 4689999996
No 206
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=87.49 E-value=1.8 Score=41.01 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=41.7
Q ss_pred CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEeecccc-CCC-CCCCcccceE
Q 019228 254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASK-QLP-YPSLSFDMLH 322 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~-rLP-FpD~SFDlVh 322 (344)
.++||.||.+.|.-+.+|+.. .-.+ .+...|..+++.+.|++. |+. ...+ .|+. -|- +.+++||+|+
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEE
Confidence 468999999999888888764 1011 233356667776666642 443 2231 1221 122 6789999998
Q ss_pred e
Q 019228 323 C 323 (344)
Q Consensus 323 c 323 (344)
-
T Consensus 138 I 138 (219)
T COG4122 138 I 138 (219)
T ss_pred E
Confidence 5
No 207
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.88 E-value=2 Score=40.51 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=36.7
Q ss_pred CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHH----HHHHcCC--CeEEeeccccCCCCCCCcccceEec
Q 019228 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQ----LTLERGL--PAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq----~A~eRGv--pa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
...+|+||||+|-....|++. +++.+. .|+.+...+ -|+-.++ ..+..++-. .| ..++.|+++-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~la---tDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l--~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLA---TDINPEALEATLETARCNRVHIDVVRTDLLS-GL--RNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEE---ecCCHHHHHHHHHHHHhcCCccceeehhHHh-hh--ccCCccEEEEC
Confidence 468999999999888888875 343333 355544332 2333333 334444311 11 22777776654
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=85.49 E-value=1.5 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.1
Q ss_pred CCeEEEECCccchhhHHHhhCC
Q 019228 254 VRTILDIGCGYGSFGAHLFSKE 275 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~ 275 (344)
.++|||||||.|-+..+-++.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG 199 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG 199 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC
Confidence 3689999999997776666554
No 209
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=83.62 E-value=1.9 Score=40.06 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=38.2
Q ss_pred CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCC----CeEEeeccccCCC-----CCCCc
Q 019228 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFASKQLP-----YPSLS 317 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~lda~rLP-----FpD~S 317 (344)
.++||+|||++|.-+.+|++. +...++ .+..+...+.|++ .|+ .+..++. .+-|| .+.+.
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~t---iE~~~~~~~~A~~~~~~ag~~~~I~~~~gda-~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITT---IEIDPERAEIARENFRKAGLDDRIEVIEGDA-LEVLPELANDGEEGQ 121 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEE---EESSHHHHHHHHHHHHHTTGGGGEEEEES-H-HHHHHHHHHTTTTTS
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEE---ecCcHHHHHHHHHHHHhcCCCCcEEEEEecc-HhhHHHHHhccCCCc
Confidence 468999999999888888864 333333 3444455555533 243 3444432 11122 12468
Q ss_pred ccceEec
Q 019228 318 FDMLHCA 324 (344)
Q Consensus 318 FDlVhcs 324 (344)
||+|+.-
T Consensus 122 fD~VFiD 128 (205)
T PF01596_consen 122 FDFVFID 128 (205)
T ss_dssp EEEEEEE
T ss_pred eeEEEEc
Confidence 9999864
No 210
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=83.59 E-value=1.2 Score=42.60 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=17.0
Q ss_pred CCeEEEECCccchhhHHHhh
Q 019228 254 VRTILDIGCGYGSFGAHLFS 273 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Lae 273 (344)
.++||+||+++|.-+.+|+.
T Consensus 80 ak~iLEiGT~~GySal~la~ 99 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATAL 99 (247)
T ss_pred CCEEEEEeChhhHHHHHHHh
Confidence 46899999999988887775
No 211
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=82.70 E-value=0.75 Score=46.54 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=42.4
Q ss_pred eEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHcCCC----eEEeeccccCCCCCCCcccceEeccccc
Q 019228 256 TILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLP----AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eRGvp----a~~~~lda~rLPFpD~SFDlVhcs~~Li 328 (344)
.+||+|||.|-...+...- ++++++.....+..++. .+...++. .+++ +....||+|++||.|-+..+..
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~-~~~~~~l~~k~~~~~~--~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANE-LAKKAYLDNKCNFVVA--DFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHH-HHHHHHhhhhcceehh--hhhcCCCCccccCcEEEEeecc
Confidence 6899999999887776653 44333322222222221 11112221 2333 4568899999999999988774
Q ss_pred c
Q 019228 329 D 329 (344)
Q Consensus 329 ~ 329 (344)
+
T Consensus 190 ~ 190 (364)
T KOG1269|consen 190 H 190 (364)
T ss_pred c
Confidence 4
No 212
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=82.18 E-value=1.4 Score=43.23 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=29.3
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
..+|||||-.|.+++.++.. +. ..+-+.|+.+..|+.|.+.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~ 101 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKE 101 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHh
Confidence 47999999999999988875 21 1234456677777777653
No 213
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=81.83 E-value=1.9 Score=39.06 Aligned_cols=68 Identities=21% Similarity=0.422 Sum_probs=35.8
Q ss_pred eEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHH----cCC----CeEEeeccc--cCCCCCCCcccceEe
Q 019228 256 TILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFAS--KQLPYPSLSFDMLHC 323 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~lda--~rLPFpD~SFDlVhc 323 (344)
+|||+-||.|.-+..++... |+++ |.++..++.|+. -|+ .++.++.-. .++..... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viai-----did~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAI-----DIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEE-----ES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEE-----ECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEE
Confidence 79999999999999999874 4444 455555555442 343 345555311 12332222 899998
Q ss_pred cccccccCc
Q 019228 324 ARCGVDWDQ 332 (344)
Q Consensus 324 s~~Li~W~~ 332 (344)
+ -+|--
T Consensus 76 S---PPWGG 81 (163)
T PF09445_consen 76 S---PPWGG 81 (163)
T ss_dssp ------BSS
T ss_pred C---CCCCC
Confidence 7 37754
No 214
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=81.55 E-value=1 Score=44.02 Aligned_cols=86 Identities=14% Similarity=0.235 Sum_probs=51.2
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCc-eEEEcccccccHHHHHHHHH----c-----C
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLE----R-----G 298 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V-~~~sIa~~D~sea~Iq~A~e----R-----G 298 (344)
+.+.+.|.+.+.-..+.. ...+|||...|-|.+|..-++++. .++++.- | +.-++.|.- + .
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk-d--p~VLeLa~lNPwSr~l~~~~ 186 (287)
T COG2521 116 GTDPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGAIHVITVEK-D--PNVLELAKLNPWSRELFEIA 186 (287)
T ss_pred CcCcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCCcEEEEEee-C--CCeEEeeccCCCCccccccc
Confidence 557777777775433211 125899999999999998888875 3334321 1 112222221 1 2
Q ss_pred CCeEEeeccccCCCCCCCcccceEe
Q 019228 299 LPAMIGSFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 299 vpa~~~~lda~rLPFpD~SFDlVhc 323 (344)
+.+++|+.-.----|+|.|||+|+-
T Consensus 187 i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 187 IKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cEEecccHHHHHhcCCccccceEee
Confidence 4556665321123689999999874
No 215
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=77.72 E-value=1.6 Score=43.33 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=15.6
Q ss_pred CCCCCCCcccceEecccccccCcccc
Q 019228 310 QLPYPSLSFDMLHCARCGVDWDQKGK 335 (344)
Q Consensus 310 rLPFpD~SFDlVhcs~~Li~W~~~~g 335 (344)
+| ||++|.|++||+.+| ||...-+
T Consensus 101 rL-fP~~Svh~~~Ss~al-HWLS~vP 124 (334)
T PF03492_consen 101 RL-FPSNSVHFGHSSYAL-HWLSQVP 124 (334)
T ss_dssp ---S-TT-EEEEEEES-T-TB-SSS-
T ss_pred cc-CCCCceEEEEEechh-hhcccCC
Confidence 44 999999999999998 9998643
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=77.43 E-value=6.1 Score=41.35 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=43.9
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCCe-EEeeccccCCC-CCCCcccceE----e
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLP-YPSLSFDMLH----C 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvpa-~~~~lda~rLP-FpD~SFDlVh----c 323 (344)
.+|||+++|.|.=+.+|++. +-.+ .|...|+++..++...+ -|+.. .+...|+..++ ...+.||.|+ |
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g-~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQG-AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 57999999999877777664 1111 34456777766554433 26653 34445666552 4456799999 7
Q ss_pred cc
Q 019228 324 AR 325 (344)
Q Consensus 324 s~ 325 (344)
+.
T Consensus 194 SG 195 (470)
T PRK11933 194 SG 195 (470)
T ss_pred CC
Confidence 74
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=77.20 E-value=7 Score=38.28 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
..++||=||-|.|..++.+++..- .-.+...++.++.++.|++.
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKY 119 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHh
Confidence 457999999999999999888742 12444567888888888765
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=76.68 E-value=4.3 Score=40.41 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHc
Q 019228 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
+.+.|.+.++. ..+++|+|||.|.=...|++. +. .....+.|++++.++.+.++
T Consensus 66 ~~~~Ia~~i~~----------~~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~ 123 (319)
T TIGR03439 66 HSSDIAASIPS----------GSMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAE 123 (319)
T ss_pred HHHHHHHhcCC----------CCEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHh
Confidence 34556666652 237999999999776665542 21 13456789998888776654
No 219
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=75.02 E-value=1.9 Score=37.25 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEEEECCccchhhHHHhhCCceEEE
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMC 280 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~s 280 (344)
..-.|+|||.|.+.-.|...+..+..
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~G 85 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWG 85 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCccc
Confidence 46899999999888888887766544
No 220
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=74.65 E-value=4.8 Score=42.57 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=39.7
Q ss_pred ccccccccceee-----ecCCCcc---ccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC
Q 019228 208 KRMMMLEEEQIS-----FRSASLI---FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK 274 (344)
Q Consensus 208 q~W~~~eg~~~~-----FpGggt~---F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer 274 (344)
..|+..|+++.. -...+.| |+++.+|+.-|.+.|+..++..- .+--.+||||.|||.+...-...
T Consensus 15 ~EWiv~ee~yd~~qelArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~--~gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 15 SEWIVIEENYDTDQELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLD--IGKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred eeEEEeecccchHHHHHHhhHHHHhhcccccHHHHHHHHHHhcccceecc--CceEEEEEccCCccHHHHHHHHh
Confidence 357776665432 1223444 35888899999999886554110 11126999999999665443333
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=74.27 E-value=8.5 Score=40.67 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=54.1
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---Ce-EEeeccccCCCCCCCcccceEecccccccC
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PA-MIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa-~~~~lda~rLPFpD~SFDlVhcs~~Li~W~ 331 (344)
++|=+|||-=-+...|-+-+.. +|...|.+.-.++....++. +. .+..++...+.|+|+|||+|+--..+....
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999888877775432 44556677666666665542 22 233456779999999999999988886554
Q ss_pred ccc
Q 019228 332 QKG 334 (344)
Q Consensus 332 ~~~ 334 (344)
.+.
T Consensus 129 ~de 131 (482)
T KOG2352|consen 129 EDE 131 (482)
T ss_pred CCc
Confidence 443
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=73.84 E-value=3.3 Score=40.22 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..+|||||||.=-++...+...-. ....+.|++..++++...- +++......|... --+..+.|+++.-
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~-~~~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLS-DPPKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTT-SHTTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeec-cCCCCCcchhhHH
Confidence 579999999999888877665321 2445678888887765432 4443333222111 2355667776653
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=73.62 E-value=2.1 Score=43.34 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=39.4
Q ss_pred eEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCC-CCCCCcccceEe
Q 019228 256 TILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQL-PYPSLSFDMLHC 323 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rL-PFpD~SFDlVhc 323 (344)
+|||+-||+|.++.+++.+ ++. .+...|.++..++.+++. ++. +.+-..|+.++ ....+.||+|..
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 7999999999999998876 432 344467777666555432 332 22221233322 222357998876
No 224
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=70.95 E-value=11 Score=35.59 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=36.5
Q ss_pred CeEEEECCccchhhHHHh--hCCceEEEcccccccHH---HHHH-HHHcCCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228 255 RTILDIGCGYGSFGAHLF--SKELLTMCIANYEASGS---QVQL-TLERGLP-AMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~La--er~V~~~sIa~~D~sea---~Iq~-A~eRGvp-a~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
.+++|||.|.|.-|.-|+ ..+.. ++..|.... .++. +.+-+++ +.+-...++.+.=...-||+|+|..+
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 689999999998887765 22322 222333332 2332 3445665 33322223333211111999999754
No 225
>PRK10742 putative methyltransferase; Provisional
Probab=68.79 E-value=9.1 Score=37.20 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
+.|.+.+.++.+ ..-+|||.=+|.|..+..++.++..++-+...-...+.++..+++
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 456677765543 112799999999999999999976544444333333344444443
No 226
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=65.93 E-value=9.8 Score=37.81 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH---cC--C----
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RG--L---- 299 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e---RG--v---- 299 (344)
+...||..|.+++..... .. ...-++||||||.-..=..|..+ ...-.+.+.|+++..++.|++ +. +
T Consensus 81 ~R~nYi~~i~DlL~~~~~--~~-~~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNP--GI-PEKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHT--TC--GC-S---EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred hhHHHHHHHHHHhhcccc--cc-ccceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 556799999999875332 01 11347999999977433333322 112344456666666666653 22 2
Q ss_pred CeEEeecc---ccCCCCCCCcccceEec
Q 019228 300 PAMIGSFA---SKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 300 pa~~~~ld---a~rLPFpD~SFDlVhcs 324 (344)
.+....-+ -..+--+++.||..+|+
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCN 184 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCN 184 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-
T ss_pred EEEEcCCccccchhhhcccceeeEEecC
Confidence 22221100 01233345689999996
No 227
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.84 E-value=16 Score=35.92 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=43.4
Q ss_pred ceeeecCCC--ccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH
Q 019228 216 EQISFRSAS--LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (344)
Q Consensus 216 ~~~~FpGgg--t~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~ 293 (344)
.+|.||-+- .+-.+.++||..|.+++....|.. .++.+ ++||||.|.--.= -|+...-.+-++.+.|++...++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~-~~~~i-~~LDIGvGAnCIY-PliG~~eYgwrfvGseid~~sl~s 117 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQI-PGKNI-RILDIGVGANCIY-PLIGVHEYGWRFVGSEIDSQSLSS 117 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCC-CcCce-EEEeeccCccccc-ccccceeecceeecCccCHHHHHH
Confidence 356677543 334577889999999998655411 12223 6999998754221 122211123455666666655544
Q ss_pred HH
Q 019228 294 TL 295 (344)
Q Consensus 294 A~ 295 (344)
|+
T Consensus 118 A~ 119 (292)
T COG3129 118 AK 119 (292)
T ss_pred HH
Confidence 43
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=63.93 E-value=21 Score=36.77 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=45.7
Q ss_pred CeEEEECCccchhhHH--HhhCCce------------------------------E-----E-EcccccccHHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAH--LFSKELL------------------------------T-----M-CIANYEASGSQVQLTLE 296 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~--Laer~V~------------------------------~-----~-sIa~~D~sea~Iq~A~e 296 (344)
..++|==||+|++..- |+..++- + . -+.+.|++..+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 5799999999999843 3332210 0 0 13467788877776654
Q ss_pred ----cCCC--eEEeeccccCCCCCCCcccceEec
Q 019228 297 ----RGLP--AMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 297 ----RGvp--a~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.|+. +.+-.+|+++|+=+-+.+|+|+|+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 3654 344455677775554899999996
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=63.26 E-value=9.8 Score=35.46 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=10.9
Q ss_pred CeEEEECCccchhhH
Q 019228 255 RTILDIGCGYGSFGA 269 (344)
Q Consensus 255 r~VLDVGCGtGsfaa 269 (344)
.+.+|+|||.|....
T Consensus 44 dvF~DlGSG~G~~v~ 58 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVF 58 (205)
T ss_dssp -EEEEES-TTSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999996643
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=61.51 E-value=13 Score=34.54 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred EEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cC----CCeEEeeccccCCCCCCCc-ccceEecc
Q 019228 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RG----LPAMIGSFASKQLPYPSLS-FDMLHCAR 325 (344)
Q Consensus 257 VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RG----vpa~~~~lda~rLPFpD~S-FDlVhcs~ 325 (344)
|.||||--|.++.+|++++.. ..+...|+++.-++.|++ .| +...+++. -. +++.+- .|+|+-+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG-L~--~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG-LE--VLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG-GG--G--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc-cc--ccCCCCCCCEEEEec
Confidence 579999999999999998653 233445666665555554 24 33445542 11 344433 67777654
No 231
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=61.40 E-value=24 Score=32.05 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.3
Q ss_pred CeEEEECCccchhhHHHhhCCce
Q 019228 255 RTILDIGCGYGSFGAHLFSKELL 277 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~ 277 (344)
.++||+=||+|++|.--++|++.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~ 66 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK 66 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S
T ss_pred CeEEEcCCccCccHHHHHhcCCC
Confidence 58999999999999988888753
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=59.09 E-value=16 Score=34.85 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH----HHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~----A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W 330 (344)
++|||+|.|.|.-+..-+..+.. .+...|..+..++. |...|+.+.+.- .++-+.+..||+|..+.+.++=
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~---~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTH---ADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEee---ccccCCCcceeEEEeeceecCc
Confidence 58999999999554333322211 11223333333322 223344443332 2344588999999999877653
Q ss_pred C
Q 019228 331 D 331 (344)
Q Consensus 331 ~ 331 (344)
+
T Consensus 156 ~ 156 (218)
T COG3897 156 T 156 (218)
T ss_pred h
Confidence 3
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=54.57 E-value=31 Score=34.91 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=61.2
Q ss_pred ccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228 214 EEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (344)
Q Consensus 214 eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq 292 (344)
.|-+|.+.-.-.||+ +...=-..+.+++.. | .+|||.=+|.|-|+..++..+... +...|+.+..+.
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~--G--------E~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~ 225 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAELVKE--G--------ETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVE 225 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhhhcC--C--------CEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHH
Confidence 444555555556773 444334456666653 2 589999999999999988875431 334566665554
Q ss_pred HHHHc----C----CCeEEeeccccCCCCCCCcccceEec
Q 019228 293 LTLER----G----LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 293 ~A~eR----G----vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
..+|. + +.++++ |+...++.-+.||-|++.
T Consensus 226 ~L~eNi~LN~v~~~v~~i~g--D~rev~~~~~~aDrIim~ 263 (341)
T COG2520 226 YLKENIRLNKVEGRVEPILG--DAREVAPELGVADRIIMG 263 (341)
T ss_pred HHHHHHHhcCccceeeEEec--cHHHhhhccccCCEEEeC
Confidence 44332 2 234455 567777777999999987
No 234
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=54.14 E-value=11 Score=36.27 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=33.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-------------CCCeEEeeccccCCCCCCCcccce
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------------GLPAMIGSFASKQLPYPSLSFDML 321 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-------------Gvpa~~~~lda~rLPFpD~SFDlV 321 (344)
.+|||.=+|-|.=+..|+..|..++.+....+-.+.++-++++ .+....++. .+-|+.++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~-~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA-LEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C-CCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH-HHHHhhcCCCCCEE
Confidence 3899999999977776665544333333332222333333222 133344442 23366789999999
Q ss_pred Eec
Q 019228 322 HCA 324 (344)
Q Consensus 322 hcs 324 (344)
..=
T Consensus 156 Y~D 158 (234)
T PF04445_consen 156 YFD 158 (234)
T ss_dssp EE-
T ss_pred EEC
Confidence 874
No 235
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=52.81 E-value=20 Score=34.31 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.1
Q ss_pred CCCcccceEecccccccCc
Q 019228 314 PSLSFDMLHCARCGVDWDQ 332 (344)
Q Consensus 314 pD~SFDlVhcs~~Li~W~~ 332 (344)
+++.||+|.|+.+| ++.+
T Consensus 101 ~~e~FdvIs~SLVL-NfVP 118 (219)
T PF11968_consen 101 ESEKFDVISLSLVL-NFVP 118 (219)
T ss_pred cccceeEEEEEEEE-eeCC
Confidence 47899999999887 5443
No 236
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=51.94 E-value=22 Score=35.63 Aligned_cols=73 Identities=25% Similarity=0.213 Sum_probs=41.3
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHH----HHHHcCCCe----EEee-ccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQ----LTLERGLPA----MIGS-FASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq----~A~eRGvpa----~~~~-lda~rLPFpD~SFDlVhcs 324 (344)
-+||||.||.|-+-.-.++. .....++...|.++..|+ .++++|+.- ..++ +|...|.--+-..++++.+
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs 216 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS 216 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence 37999999999775544332 221236666788776664 455677643 2333 2333333334445677766
Q ss_pred ccc
Q 019228 325 RCG 327 (344)
Q Consensus 325 ~~L 327 (344)
...
T Consensus 217 GL~ 219 (311)
T PF12147_consen 217 GLY 219 (311)
T ss_pred cch
Confidence 533
No 237
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.85 E-value=67 Score=31.00 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCc----eEEEcccccccHHHHHHHHHcCC----CeE
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLERGL----PAM 302 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V----~~~sIa~~D~sea~Iq~A~eRGv----pa~ 302 (344)
...+..|.++++.+ . .+.||||--|.+..+|.+.+. ++.++.+..+..+.-++. +.++ ...
T Consensus 4 ~~RL~~va~~V~~~---------~-~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~-~~~l~~~i~vr 72 (226)
T COG2384 4 SKRLTTVANLVKQG---------A-RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK-KNNLSERIDVR 72 (226)
T ss_pred hHHHHHHHHHHHcC---------C-ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH-hcCCcceEEEe
Confidence 34577788887632 2 399999999999999998743 233333333322222222 2222 223
Q ss_pred EeeccccCCCCCCC-cccceEecc
Q 019228 303 IGSFASKQLPYPSL-SFDMLHCAR 325 (344)
Q Consensus 303 ~~~lda~rLPFpD~-SFDlVhcs~ 325 (344)
.++ . -.|+..+ .+|+|+-+.
T Consensus 73 ~~d--g-l~~l~~~d~~d~ivIAG 93 (226)
T COG2384 73 LGD--G-LAVLELEDEIDVIVIAG 93 (226)
T ss_pred ccC--C-ccccCccCCcCEEEEeC
Confidence 333 2 2355544 788887653
No 238
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=50.64 E-value=58 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred CeEEEECCccchhhHHHhhCCce
Q 019228 255 RTILDIGCGYGSFGAHLFSKELL 277 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~ 277 (344)
.++||+=+|+|+++.--++|+..
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~ 67 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAA 67 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCc
Confidence 48999999999999998888653
No 239
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.84 E-value=10 Score=32.56 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 019228 58 NFTMLFLKFSLIAIVFLA 75 (344)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~ 75 (344)
||++++++|+++||++|+
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 456666666665555555
No 240
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=46.54 E-value=25 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 019228 57 QNFTMLFLKFSLIAIVFLALT 77 (344)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ 77 (344)
..|+++.+..+++||++.|-|
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999998854
No 241
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=46.01 E-value=1.3 Score=36.12 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=7.3
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 019228 52 TPRSRQNFTMLFLKFSLIAIV 72 (344)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (344)
.||.+.+|+.|++++.|||+|
T Consensus 60 r~rkKrrwlwLlikl~lV~av 80 (81)
T PF14812_consen 60 RPRKKRRWLWLLIKLFLVFAV 80 (81)
T ss_dssp -----------TTTTHCCHCC
T ss_pred CccccchhHHHHHHHHHHhee
Confidence 389999999999888777554
No 242
>PRK00536 speE spermidine synthase; Provisional
Probab=45.81 E-value=47 Score=32.31 Aligned_cols=57 Identities=9% Similarity=0.073 Sum_probs=41.2
Q ss_pred hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
..+..+.-++|+-. +...++||=||.|.|..++.++++.- .+...|++++.++.+++
T Consensus 56 fiYHEmLvHppl~~-----h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 56 HIESELLAHMGGCT-----KKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS 112 (262)
T ss_pred hhHHHHHHHHHHhh-----CCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH
Confidence 34555555666432 24578999999999999998888752 45557788888888876
No 243
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=45.18 E-value=23 Score=34.42 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCeEEEECCccchhhHHHhhCC---ceEEEccccccc
Q 019228 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEAS 287 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~---V~~~sIa~~D~s 287 (344)
.+++||||.-||-|+..|++++ |.++++.-..++
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH 116 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC
Confidence 4789999999999999999985 345554444333
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=40.15 E-value=16 Score=35.24 Aligned_cols=19 Identities=47% Similarity=0.889 Sum_probs=16.3
Q ss_pred eEEEECCccchhhHHHhhC
Q 019228 256 TILDIGCGYGSFGAHLFSK 274 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer 274 (344)
.+.|||||-|.+...|...
T Consensus 63 efaDIGCGyGGLlv~Lsp~ 81 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPK 81 (249)
T ss_pred eEEeeccCccchhhhcccc
Confidence 5889999999888888775
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=39.14 E-value=51 Score=31.22 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-----CceEEEccccccc
Q 019228 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-----ELLTMCIANYEAS 287 (344)
Q Consensus 229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-----~V~~~sIa~~D~s 287 (344)
.+..-+.+|++-..+=. ...+|+|+|+-.|+++..++++ .|.++++.+.+..
T Consensus 28 RAa~KL~el~~k~~i~~-------~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~ 84 (205)
T COG0293 28 RAAYKLLELNEKFKLFK-------PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI 84 (205)
T ss_pred hHHHHHHHHHHhcCeec-------CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC
Confidence 44444667776544211 2358999999999999888765 2677787777654
No 246
>PRK14756 hypothetical protein; Provisional
Probab=39.01 E-value=37 Score=22.80 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhcC
Q 019228 56 RQNFTMLFLKFSLIAIVFLALTG 78 (344)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~ 78 (344)
-+|+-++-.++.|++|+++++|.
T Consensus 4 dLK~SL~tTvvaL~~Iva~~~ta 26 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVGLTA 26 (29)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 36777888889999999988764
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=8.7 Score=35.89 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=42.1
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEc---ccccccHHHHHHHHHcCC--Ce-EEe----eccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCI---ANYEASGSQVQLTLERGL--PA-MIG----SFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sI---a~~D~sea~Iq~A~eRGv--pa-~~~----~lda~rLPFpD~SFDlVhcs 324 (344)
+.||.+|.|-=.++..|....+...++ .+.+.+...++...-+.. .. ... .....+.--.-++||+|.|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 579999999777877776654333333 334444444444443331 00 000 11122444567799999999
Q ss_pred ccc
Q 019228 325 RCG 327 (344)
Q Consensus 325 ~~L 327 (344)
.|+
T Consensus 111 DCl 113 (201)
T KOG3201|consen 111 DCL 113 (201)
T ss_pred cch
Confidence 998
No 248
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=37.91 E-value=67 Score=30.46 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=30.2
Q ss_pred CCCeEEEECCccchhhHHHhhCC-ceEEEcccccccHHHHHHHHH
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~-V~~~sIa~~D~sea~Iq~A~e 296 (344)
..++||=||-|.|..+..+++.. +. .+...+++++.++.|++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~ 118 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARK 118 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHH
Confidence 46799999999999999998864 32 44456777777777765
No 249
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=37.13 E-value=16 Score=33.09 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=22.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhcCCcccccc
Q 019228 51 GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTIS 85 (344)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s 85 (344)
+.|.++.+-+++.+++++++++++|..+.++|..+
T Consensus 8 ~~~~~~~k~~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 8 GAPAKKKKKSLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred CCCccCCCceeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444444455556666667777777788888554
No 250
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=37.12 E-value=27 Score=33.54 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=35.0
Q ss_pred CeEEEECCccchhhHHHhh--CCceEEEcccccccHHHHHHHHHc----C-CCeEEeeccccCCCCCCCcccceEec
Q 019228 255 RTILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq~A~eR----G-vpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
.+.-|+|.|+|-++..-++ ..|.++...+ .....|.|. | ..+.+-..|+..-.| ..-|+|+|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHH
Confidence 3789999999966544333 2455554333 222344443 1 112222334555555 677999985
No 251
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=34.30 E-value=65 Score=30.87 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCC--eEEeeccccCCCCC--CCcccceEecccccccC
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYP--SLSFDMLHCARCGVDWD 331 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~rLPFp--D~SFDlVhcs~~Li~W~ 331 (344)
++||+-||.|.+..-|.+.+.. .+...|..+..++.... ..+ ...+++ +.+.-. ...+|+++..--=..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~-N~~~~~~~~Di--~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEA-NFPNKLIEGDI--TKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHH-hCCCCCccCcc--ccCchhhcCCCCCEEEeCCCChhhh
Confidence 5899999999887777776643 23446777666554333 222 233332 233211 34699999875333333
No 252
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=34.08 E-value=1.2e+02 Score=31.73 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHH----HhhCCceEEEcccccccHHHHHHHHH--
Q 019228 223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH----LFSKELLTMCIANYEASGSQVQLTLE-- 296 (344)
Q Consensus 223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~----Laer~V~~~sIa~~D~sea~Iq~A~e-- 296 (344)
+|.+|.- ...++.|.+++.... ..+|+|--||+|.+... +.+.. .-..+.+.+........|+-
T Consensus 165 ~GEfyTP-~~v~~liv~~l~~~~--------~~~i~DpacGsgg~l~~a~~~~~~~~-~~~~~yGqE~~~~t~~l~~mN~ 234 (489)
T COG0286 165 AGEFYTP-REVSELIVELLDPEP--------RNSIYDPACGSGGMLLQAAKYLKRHQ-DEIFIYGQEINDTTYRLAKMNL 234 (489)
T ss_pred CCccCCh-HHHHHHHHHHcCCCC--------CCeecCCCCchhHHHHHHHHHHHhhc-cceeEEEEeCCHHHHHHHHHHH
Confidence 4666642 234677888887532 24899999999987543 22222 01234445544444444432
Q ss_pred --cCCC--eEEeeccccCCCC-----CCCcccceEec
Q 019228 297 --RGLP--AMIGSFASKQLPY-----PSLSFDMLHCA 324 (344)
Q Consensus 297 --RGvp--a~~~~lda~rLPF-----pD~SFDlVhcs 324 (344)
+|+. +.....++-.-|. ..+.||.|++.
T Consensus 235 ~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaN 271 (489)
T COG0286 235 ILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIAN 271 (489)
T ss_pred HHhCCCccccccccccccCCcccccCCccceeEEEeC
Confidence 3443 2222222333333 34779998886
No 253
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=33.82 E-value=85 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.4
Q ss_pred CCCeEEEECCccchhhHHHhh-CCceEEEcccc
Q 019228 253 GVRTILDIGCGYGSFGAHLFS-KELLTMCIANY 284 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~ 284 (344)
++..+.|+|.|.|.++..|.= .+..++.|.+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 567899999999999988753 46656666554
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=32.65 E-value=91 Score=31.08 Aligned_cols=59 Identities=10% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (344)
Q Consensus 230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR 297 (344)
.--.++.+.+.+...++ .+++|.=||-|.-+..++++--. ..+.+.|.++..++.|.++
T Consensus 5 ~pVll~Evl~~L~~~~g--------giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 5 QSVLLDEVVEGLNIKPD--------GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred cchhHHHHHHhcCcCCC--------CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 33346666666654333 47999999999999888875111 2455577777777777664
No 255
>PHA01634 hypothetical protein
Probab=32.32 E-value=68 Score=29.07 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=26.6
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
++|||||.+.|+-+.+.+-+++. .+......+...+...+
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred CEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHH
Confidence 68999999999999988776542 22234445554444444
No 256
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=31.08 E-value=2e+02 Score=28.82 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=39.6
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCCe-EEeeccccCCC---CCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLP---YPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvpa-~~~~lda~rLP---FpD~SFDlVhc 323 (344)
.+|||+..+.|.=+.+|++. .-.+.-+.+.|.++..++...+ -|+.. .+...|+.++| ...+.||.|..
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 58999999999777777664 1111123446777665543332 36653 33334555553 22235999974
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=30.09 E-value=64 Score=33.85 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (344)
Q Consensus 253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~ 295 (344)
+.++||=+|.|.|.-++.|++.. ....|...|+++.|++++.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhh
Confidence 46799999999996666677653 1246667888899998886
No 258
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.49 E-value=1.7e+02 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=23.2
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e 296 (344)
.+|||-=||+|+-+..-.+.+-.. .+.++++.-.+.|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~R~~---ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELGRRY---IGIEIDEEYCEIAKK 231 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT-EE---EEEESSHHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcCCeE---EEEeCCHHHHHHhcC
Confidence 589999999998775544443222 224666666666643
No 259
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=69 Score=32.98 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=43.8
Q ss_pred cccccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC---Cc----eEEEcc
Q 019228 211 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---EL----LTMCIA 282 (344)
Q Consensus 211 ~~~eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer---~V----~~~sIa 282 (344)
+..+|+.++-|--+.+|. -+..++-++-+.+.. .....++.+|.|+|.++.-|+.. .. ...++.
T Consensus 42 ~G~~GDFiTApels~lFGella~~~~~~wq~~g~--------p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~ 113 (370)
T COG1565 42 IGRKGDFITAPELSQLFGELLAEQFLQLWQELGR--------PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYY 113 (370)
T ss_pred ccccCCeeechhHHHHHHHHHHHHHHHHHHHhcC--------CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEE
Confidence 345789999998888884 444443322222221 12357999999999999876552 10 134445
Q ss_pred cccccHHH
Q 019228 283 NYEASGSQ 290 (344)
Q Consensus 283 ~~D~sea~ 290 (344)
-...|+..
T Consensus 114 iiE~s~~L 121 (370)
T COG1565 114 IIEPSPEL 121 (370)
T ss_pred EEecCHHH
Confidence 55666654
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=26.10 E-value=70 Score=31.09 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=18.5
Q ss_pred CCCCCCCcccceEecccccccCccccccc
Q 019228 310 QLPYPSLSFDMLHCARCGVDWDQKGKCQK 338 (344)
Q Consensus 310 rLPFpD~SFDlVhcs~~Li~W~~~~g~~~ 338 (344)
.+|.+ ||+|+.+.|.++=....++-+
T Consensus 158 ~~~~~---~DlilasDvvy~~~~~e~Lv~ 183 (248)
T KOG2793|consen 158 RLPNP---FDLILASDVVYEEESFEGLVK 183 (248)
T ss_pred ccCCc---ccEEEEeeeeecCCcchhHHH
Confidence 44555 999999999977665555443
No 261
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=25.22 E-value=1.3e+02 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=13.7
Q ss_pred cCCCCCC-----CcccceEecccc
Q 019228 309 KQLPYPS-----LSFDMLHCARCG 327 (344)
Q Consensus 309 ~rLPFpD-----~SFDlVhcs~~L 327 (344)
+.-|++. ..||+|++..||
T Consensus 145 ~~~pl~~~~~~p~~~D~v~s~fcL 168 (256)
T PF01234_consen 145 QPNPLDPPVVLPPKFDCVISSFCL 168 (256)
T ss_dssp SSSTTTTS-SS-SSEEEEEEESSH
T ss_pred CCCCCCccccCccchhhhhhhHHH
Confidence 3445554 259999999988
No 262
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=24.05 E-value=52 Score=31.85 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=38.8
Q ss_pred CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCCeEE-eeccccCC-C-CCCCcccceEe
Q 019228 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLPAMI-GSFASKQL-P-YPSLSFDMLHC 323 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~-~~lda~rL-P-FpD~SFDlVhc 323 (344)
..|||+.++.|.=+.+|++. +-.+ .+...|.+...+....+ -|+..+. ...|+..+ | .+...||.|..
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g-~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKG-EIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTS-EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccCCCCceeeeeecccchh-HHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 47999999999777776663 1011 33446777766544332 2554322 22344444 2 33446999985
No 263
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.34 E-value=60 Score=26.42 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=15.6
Q ss_pred HHHHcCCCeEEeeccccCCCCCCCcccceEeccc
Q 019228 293 LTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (344)
Q Consensus 293 ~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~ 326 (344)
...++|+++.+-..+...++-..+.+|+|++..-
T Consensus 26 ~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 26 LCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred HHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 3445666543322222223222255777777643
No 264
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=21.73 E-value=2.8e+02 Score=27.31 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEe
Q 019228 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIG 304 (344)
Q Consensus 231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~ 304 (344)
..+.+..++.+..+ | ++||.||=|-|-....+.++...---| ...++...+.-++-| +-+..+
T Consensus 88 tpiMha~A~ai~tk-g--------grvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAISTK-G--------GRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHhhC-C--------ceEEEeccchHHHHHHHhhcCCcceEE--EecCHHHHHHHHhcccccccceEEEec
Confidence 45677777777632 2 589999999997777776664321111 234455444444433 222222
Q ss_pred eccccCCCCCCCcccceEe
Q 019228 305 SFASKQLPYPSLSFDMLHC 323 (344)
Q Consensus 305 ~lda~rLPFpD~SFDlVhc 323 (344)
.-.-----.+|+.||-|.-
T Consensus 157 ~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred chHhhhccccccCcceeEe
Confidence 1100012358889998864
No 265
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.54 E-value=87 Score=25.60 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=30.5
Q ss_pred eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEec
Q 019228 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA 324 (344)
Q Consensus 256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs 324 (344)
+|| +=||+|.-+..++ ..+.+.+.++|+++.+...+..+++-....+|+|+.+
T Consensus 5 ~IL-l~C~~G~sSS~l~---------------~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLV---------------NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred EEE-EECCCchhHHHHH---------------HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC
Confidence 455 7799883333222 2334567788887655433333333333568998876
No 266
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=20.93 E-value=1e+02 Score=30.66 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=17.0
Q ss_pred CCeEEEECCccchhhHHHhhCC
Q 019228 254 VRTILDIGCGYGSFGAHLFSKE 275 (344)
Q Consensus 254 ir~VLDVGCGtGsfaa~Laer~ 275 (344)
..+|||+|||.|-.+......+
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~ 138 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKG 138 (282)
T ss_pred CceeEecCCcccccchhhhhhc
Confidence 3689999999997776665543
No 267
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=20.90 E-value=92 Score=30.63 Aligned_cols=13 Identities=46% Similarity=0.989 Sum_probs=6.5
Q ss_pred CCCeEEEECCccc
Q 019228 253 GVRTILDIGCGYG 265 (344)
Q Consensus 253 ~ir~VLDVGCGtG 265 (344)
+++..||+|||-=
T Consensus 68 GIrQFLDlGsGlP 80 (267)
T PF04672_consen 68 GIRQFLDLGSGLP 80 (267)
T ss_dssp ---EEEEET--S-
T ss_pred CcceEEEcccCCC
Confidence 6899999999954
No 268
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=20.76 E-value=71 Score=32.96 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----eEEeeccccCCCCC---CCcccceE
Q 019228 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----AMIGSFASKQLPYP---SLSFDMLH 322 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a~~~~lda~rLPFp---D~SFDlVh 322 (344)
++|||+=|=||.|+.+.+..+.. +++..|.+...++.|++. |+. +++++. -+-|... ...||+|+
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv-f~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV-FKWLRKAERRGEKFDLII 295 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH-HHHHHHHHhcCCcccEEE
Confidence 58999999999999888876541 223357776666666553 432 233331 0122223 33899998
Q ss_pred e
Q 019228 323 C 323 (344)
Q Consensus 323 c 323 (344)
.
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 6
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=20.71 E-value=83 Score=30.20 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.3
Q ss_pred CeEEEECCccchhhHHHhhC
Q 019228 255 RTILDIGCGYGSFGAHLFSK 274 (344)
Q Consensus 255 r~VLDVGCGtGsfaa~Laer 274 (344)
.+|||+||-.|++..--.++
T Consensus 71 ~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CEEEEccCCCChHHHHHHHh
Confidence 48999999999999877665
No 270
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=20.59 E-value=53 Score=22.24 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=13.8
Q ss_pred cCCCC-CCCcccccCCCCC
Q 019228 157 RHCGQ-ELKQHCLVLPPVK 174 (344)
Q Consensus 157 RhCpp-~~r~~Clvp~P~~ 174 (344)
-|||| +-.+..+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 58998 6567888888764
No 271
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=20.19 E-value=38 Score=29.05 Aligned_cols=11 Identities=55% Similarity=1.105 Sum_probs=8.8
Q ss_pred EEEECCccchh
Q 019228 257 ILDIGCGYGSF 267 (344)
Q Consensus 257 VLDVGCGtGsf 267 (344)
-+|||||.|.-
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 36999999954
Done!