Query 019229
Match_columns 344
No_of_seqs 140 out of 413
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 6E-39 1.3E-43 288.7 22.1 176 59-239 1-198 (198)
2 PF04755 PAP_fibrillin: PAP_fi 96.9 0.00087 1.9E-08 60.5 3.6 45 256-300 26-71 (198)
3 PF08212 Lipocalin_2: Lipocali 72.8 60 0.0013 27.8 10.7 41 210-250 81-122 (143)
4 COG3040 Blc Bacterial lipocali 62.7 50 0.0011 30.5 8.3 40 212-251 111-151 (174)
5 PF14869 DUF4488: Domain of un 44.9 2E+02 0.0044 25.5 8.9 68 108-185 2-71 (133)
6 cd06407 PB1_NLP A PB1 domain i 43.6 44 0.00095 26.8 4.3 12 212-223 39-50 (82)
7 TIGR03422 mito_frataxin fratax 40.9 25 0.00055 29.2 2.7 22 233-254 45-67 (97)
8 cd06398 PB1_Joka2 The PB1 doma 37.5 51 0.0011 27.0 3.9 13 210-222 42-54 (91)
9 PF05973 Gp49: Phage derived p 26.1 2E+02 0.0044 22.5 5.6 42 80-121 7-50 (91)
10 KOG3413 Mitochondrial matrix p 25.9 60 0.0013 29.4 2.6 55 214-289 74-129 (156)
11 PF04213 HtaA: Htaa; InterPro 24.3 1.9E+02 0.0042 25.9 5.7 33 210-245 73-105 (168)
12 PF06251 Caps_synth_GfcC: Caps 22.9 72 0.0016 29.8 2.8 73 48-123 44-130 (229)
13 TIGR02116 toxin_Txe_YoeB toxin 20.7 1.2E+02 0.0026 23.5 3.2 33 81-114 17-49 (80)
14 cd06397 PB1_UP1 Uncharacterize 20.4 76 0.0017 25.9 2.0 10 214-223 40-49 (82)
15 PRK00446 cyaY frataxin-like pr 20.2 1.1E+02 0.0024 25.8 3.0 39 214-255 29-67 (105)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=6e-39 Score=288.73 Aligned_cols=176 Identities=40% Similarity=0.681 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCCC-CCcCeeEEEEEecCCCCCCccccc-ccCcee
Q 019229 59 TGEENQLIDALIGIQGRGRSASARQLNDVECAVKVLEGLQGVPDPTGS-SLIEGRWQLMFTTRPGTASPIQRT-FVGVET 136 (344)
Q Consensus 59 ~~lK~~LL~ala~t~~RG~~asp~qr~~IeelI~eLEalNPt~~Pa~s-~LL~G~W~LvYTT~~~t~splqr~-~~Gv~~ 136 (344)
+++|++||++++++ +||..++++++++|+++|++||++||+++|+++ ++|+|+|+|+|||++++.+.+++. .+++..
T Consensus 1 ~~~K~~Ll~~~~~~-~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGT-NRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRV 79 (198)
T ss_pred ChHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccc
Confidence 36999999999999 899999999999999999999999999999998 999999999999999988777653 456788
Q ss_pred ceeeeEEEEeCCCCcEEEEEEeec---ceeeEEEEEEEEEecCCEEEEEEEeeeeeeccc-----------------ccc
Q 019229 137 FSVFQEISLRTNDPRVSNIVKFSE---AIGELKVEAAASIKDGKRILFQFDKAAFSFKFL-----------------PFK 196 (344)
Q Consensus 137 ~~vfQ~I~ld~~~grv~NvV~f~~---~~G~v~V~A~~~~~~~~Rv~V~F~~a~l~~~ll-----------------~fk 196 (344)
+++||.|+ .+++++.|+|+|.. ..|.+.+.+.+++.++.|+.++|+++.+.++.. ...
T Consensus 80 ~~v~Q~id--~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~ 157 (198)
T PF04755_consen 80 GRVFQTID--ADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGIS 157 (198)
T ss_pred cceEEEEE--CCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccc
Confidence 99999984 46789999999765 468899999999999999999999998865211 112
Q ss_pred cCCCcccccCCCCcceEEEEEEecCCCceEEEeCCCCcEEEEE
Q 019229 197 FPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQ 239 (344)
Q Consensus 197 ~P~Pvpf~Llg~~~kGwLdtTYLDd~~dLRIsRGnkGsvFVl~ 239 (344)
..+|+++++.+..++|||||||||| ||||+||++|++|||.
T Consensus 158 ~~~~~~~~~~~~~~~g~l~~tYLDe--dlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 158 DELPVPLPLPGGSPKGWLDTTYLDE--DLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccccccCCCCCceEEEEEEECC--CeEEEEcCCCCEEEeC
Confidence 2355666666678999999999999 9999999999999983
No 2
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=96.88 E-value=0.00087 Score=60.45 Aligned_cols=45 Identities=20% Similarity=0.543 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhcCCCCchhhh-hcccceeEEEEecccCcchHHHH
Q 019229 256 TQVEQAINEFISSNQSTAEEER-ELLEGEWQMLWSSQMETDSWIEN 300 (344)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (344)
..|.++|++|-+.|++..|... +++.|+|+|+|+++....+.++.
T Consensus 26 ~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~ 71 (198)
T PF04755_consen 26 EEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQR 71 (198)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccc
Confidence 5789999999999999988876 99999999999999999988775
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=72.85 E-value=60 Score=27.84 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=28.7
Q ss_pred cceEEEEEEecCCC-ceEEEeCCCCcEEEEEecCCcchhhhh
Q 019229 210 AKGWLDTTYLSPSG-NLRISRGNKGTTFVLQKKTEPRQTLLS 250 (344)
Q Consensus 210 ~kGwLdtTYLDd~~-dLRIsRGnkGsvFVl~R~~~p~~~~~~ 250 (344)
..|-..+.|+|.+- -.=|+-.++-.++||.|...+.+..++
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~~~~~~ 122 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLSEETYA 122 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--HHHHH
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCCHHHHH
Confidence 46777899999932 145566788899999999887765443
No 4
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=62.69 E-value=50 Score=30.47 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=29.0
Q ss_pred eEEEEEEecCCCceEEE-eCCCCcEEEEEecCCcchhhhhh
Q 019229 212 GWLDTTYLSPSGNLRIS-RGNKGTTFVLQKKTEPRQTLLSA 251 (344)
Q Consensus 212 GwLdtTYLDd~~dLRIs-RGnkGsvFVl~R~~~p~~~~~~~ 251 (344)
|-..++|+|++...=|. -.++-.+|++.|...+.+..++.
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~~ 151 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQETLKR 151 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCHHHHHH
Confidence 66789999994433333 34788899999988787665544
No 5
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=44.86 E-value=2e+02 Score=25.48 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=42.4
Q ss_pred CcCeeEEEE-EecC-CCCCCcccccccCceeceeeeEEEEeCCCCcEEEEEEeecceeeEEEEEEEEEecCCEEEEEEEe
Q 019229 108 LIEGRWQLM-FTTR-PGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDK 185 (344)
Q Consensus 108 LL~G~W~Lv-YTT~-~~t~splqr~~~Gv~~~~vfQ~I~ld~~~grv~NvV~f~~~~G~v~V~A~~~~~~~~Rv~V~F~~ 185 (344)
-|.|-|||. |-+. ++... + +...+++..+ .++|++.|++-.......+...++|+..++....-..++
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g---~----l~~~~~lKil---S~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPG---K----LKPSNVLKIL---SDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred CceEEEEEEEEeecCcccCc---e----EeecccEEEE---cCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 378999999 4443 22111 1 1222344443 467999999886544345677788998888766666665
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=43.59 E-value=44 Score=26.79 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=10.1
Q ss_pred eEEEEEEecCCC
Q 019229 212 GWLDTTYLSPSG 223 (344)
Q Consensus 212 GwLdtTYLDd~~ 223 (344)
+-+.+.|+||+|
T Consensus 39 ~~f~LkY~Ddeg 50 (82)
T cd06407 39 SAFDLKYLDDDE 50 (82)
T ss_pred CeeEEEEECCCC
Confidence 788999999953
No 7
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=40.87 E-value=25 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.0
Q ss_pred CcEEEEEecCCcchhhhhh-hhc
Q 019229 233 GTTFVLQKKTEPRQTLLSA-IST 254 (344)
Q Consensus 233 GsvFVl~R~~~p~~~~~~~-~~~ 254 (344)
|+.||+-|..+.+|.|+++ ++-
T Consensus 45 ~~~~VINkQ~p~~QIWlsSp~sG 67 (97)
T TIGR03422 45 VGTYVINKQPPNKQIWLSSPVSG 67 (97)
T ss_pred CCEEEEeCCChhhHHheecCCCC
Confidence 7899999999999999988 443
No 8
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=37.50 E-value=51 Score=26.97 Aligned_cols=13 Identities=23% Similarity=0.228 Sum_probs=10.1
Q ss_pred cceEEEEEEecCC
Q 019229 210 AKGWLDTTYLSPS 222 (344)
Q Consensus 210 ~kGwLdtTYLDd~ 222 (344)
+...+.+.|.|++
T Consensus 42 ~~~~~~l~Y~Ded 54 (91)
T cd06398 42 PDADLSLTYTDED 54 (91)
T ss_pred CCCcEEEEEECCC
Confidence 3367788999995
No 9
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=26.09 E-value=2e+02 Score=22.51 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCCCCC-CCc-CeeEEEEEecCC
Q 019229 80 SARQLNDVECAVKVLEGLQGVPDPTGS-SLI-EGRWQLMFTTRP 121 (344)
Q Consensus 80 sp~qr~~IeelI~eLEalNPt~~Pa~s-~LL-~G~W~LvYTT~~ 121 (344)
++..+.+|...++.|+..+|...+... .+= .|-|+|......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 566779999999999988855333333 333 699999988764
No 10
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=25.88 E-value=60 Score=29.36 Aligned_cols=55 Identities=29% Similarity=0.526 Sum_probs=41.4
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcchhHHHHHHHHHhcCCCCchhhhhcc-cceeEEEEe
Q 019229 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELL-EGEWQMLWS 289 (344)
Q Consensus 214 LdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 289 (344)
+|+-|=|. -|-|--|+.| +||+-|..+-.|.|++- +-.+|-..++. +|+|--.=+
T Consensus 74 ~Dv~y~~G--VLTl~lg~~G-TYViNKQ~PnkQIWlSS------------------P~SGPkryD~~~~~~Wiy~r~ 129 (156)
T KOG3413|consen 74 FDVDYADG--VLTLKLGSVG-TYVINKQPPNKQIWLSS------------------PVSGPKRYDLCRAGEWIYLRD 129 (156)
T ss_pred cccccccc--eEEEEecCce-eEEecCCCCcceeeeeC------------------CCCCCccccccccCceEEecC
Confidence 37888877 8999999888 89999988888999864 34445556666 689865543
No 11
>PF04213 HtaA: Htaa; InterPro: IPR007331 This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport [].
Probab=24.27 E-value=1.9e+02 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.0
Q ss_pred cceEEEEEEecCCCceEEEeCCCCcEEEEEecCCcc
Q 019229 210 AKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPR 245 (344)
Q Consensus 210 ~kGwLdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~ 245 (344)
..|.||+++-|. +|.|. |.+|.|++-++...+.
T Consensus 73 h~g~Ldlt~snp--~I~~~-g~~g~L~adv~s~~~~ 105 (168)
T PF04213_consen 73 HHGILDLTISNP--RIVFD-GGTGTLYADVSSRGMD 105 (168)
T ss_pred eCCeEEEEEeCC--EEEEE-CCeEEEEEEEECCccc
Confidence 348999999999 99987 7889999988866543
No 12
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=22.92 E-value=72 Score=29.76 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCcCC-hhccchhHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHhcCCCCC-------------CCCCCCcCeeE
Q 019229 48 SSLTD-QQQLAFTGEENQLIDALIGIQGRGRSASARQLNDVECAVKVLEGLQGVPD-------------PTGSSLIEGRW 113 (344)
Q Consensus 48 s~~~d-~~~~s~~~lK~~LL~ala~t~~RG~~asp~qr~~IeelI~eLEalNPt~~-------------Pa~s~LL~G~W 113 (344)
+..++ ..+....+.|++||..|.... . ....+..+.+..++++|+....+.+ +...++|.|..
T Consensus 44 a~L~~~~~~~~~~~~~~~ll~~L~~l~-~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd 120 (229)
T PF06251_consen 44 AALFRRSKQAEAEQQKQQLLAQLAQLE-Q--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGD 120 (229)
T ss_dssp -EEE-HHHHHHHHHHHHHHHHHHHHHH-H--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEE
T ss_pred ceeecccchHHHHHHHHHHHHHHHHHh-h--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCc
Confidence 34455 335568889999988887652 2 3356677888999999988754422 22358899999
Q ss_pred EEEEecCCCC
Q 019229 114 QLMFTTRPGT 123 (344)
Q Consensus 114 ~LvYTT~~~t 123 (344)
+|.....+.+
T Consensus 121 ~L~vP~rp~~ 130 (229)
T PF06251_consen 121 RLYVPPRPNT 130 (229)
T ss_dssp EEE-----SE
T ss_pred EEEECCCCCE
Confidence 9999998764
No 13
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=20.66 E-value=1.2e+02 Score=23.50 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCCCCCcCeeEE
Q 019229 81 ARQLNDVECAVKVLEGLQGVPDPTGSSLIEGRWQ 114 (344)
Q Consensus 81 p~qr~~IeelI~eLEalNPt~~Pa~s~LL~G~W~ 114 (344)
+..++.|.++|++|+ .||.+.......|.|.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~~ 49 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGDLS 49 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCCC
Confidence 567788999998887 466532233344666543
No 14
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.36 E-value=76 Score=25.91 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=8.5
Q ss_pred EEEEEecCCC
Q 019229 214 LDTTYLSPSG 223 (344)
Q Consensus 214 LdtTYLDd~~ 223 (344)
+-+||+|++|
T Consensus 40 ~~vtYiDeD~ 49 (82)
T cd06397 40 VGVTYIDNDN 49 (82)
T ss_pred eEEEEEcCCC
Confidence 7899999954
No 15
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=20.22 E-value=1.1e+02 Score=25.75 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.0
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcc
Q 019229 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (344)
Q Consensus 214 LdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~ 255 (344)
+|+-|-+. =|.|.=++ |+.||+-|..+.+|.|+++-+-|
T Consensus 29 ~D~e~~~g--VLti~f~~-~~~~VINkQ~p~~QIWlas~sG~ 67 (105)
T PRK00446 29 IDCERNGG--VLTLTFEN-GSKIIINRQEPLHELWLAAKSGG 67 (105)
T ss_pred eeeeccCC--EEEEEECC-CCEEEEeCCCchhheeEecCCCC
Confidence 45555444 66666554 78999999998899999886433
Done!