Query 019229
Match_columns 344
No_of_seqs 140 out of 413
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 61.8 70 0.0024 27.3 10.0 73 105-186 8-81 (142)
2 4gzv_A Hypothetical protein; A 59.6 53 0.0018 28.2 9.0 100 104-229 7-108 (142)
3 1qwd_A Outer membrane lipoprot 41.9 1.2E+02 0.0043 25.5 8.8 37 212-250 114-153 (177)
4 3bpo_A Interleukin 13; IL4, IL 24.2 35 0.0012 28.6 2.0 47 256-307 8-54 (127)
5 1qbj_A Protein (double-strande 17.4 1.9E+02 0.0065 21.7 4.9 57 59-119 9-73 (81)
6 3t3l_A Frataxin, mitochondrial 16.9 83 0.0029 26.2 2.9 37 214-252 42-78 (129)
7 2a6s_A Toxin YOEB; YEFM, antit 16.3 1.6E+02 0.0054 21.1 4.0 20 81-101 21-40 (84)
8 1ew4_A CYAY protein; friedreic 16.2 82 0.0028 25.3 2.6 40 214-256 30-69 (106)
9 2fp7_A Serine protease subunit 14.8 97 0.0033 22.3 2.3 19 211-230 29-47 (54)
10 3lb6_A Interleukin-13, IL-13; 14.5 65 0.0022 27.1 1.5 46 256-307 27-72 (132)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=61.76 E-value=70 Score=27.35 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCCCcCeeEEEEEecCCCCCCcccccccC-ceeceeeeEEEEeCCCCcEEEEEEeecceeeEEEEEEEEEecCCEEEEEE
Q 019229 105 GSSLIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQF 183 (344)
Q Consensus 105 ~s~LL~G~W~LvYTT~~~t~splqr~~~G-v~~~~vfQ~I~ld~~~grv~NvV~f~~~~G~v~V~A~~~~~~~~Rv~V~F 183 (344)
+..-|.|-|+|.+-.+..-. .+| +..++.+..+ .++|++.|++-.......+...++|+..++..+.-..
T Consensus 8 ~~~~L~GvWQ~C~y~s~~pd------~~g~L~psn~lKIl---SdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~I 78 (142)
T 4i95_A 8 EPAHLQGIWQLCHYVSENPD------IPGVLKPSNTFKVL---SDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESI 78 (142)
T ss_dssp CCCSCCEEEEEEEEECSSTT------SCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEE
T ss_pred CcccceeEeEEEEEecCCCC------CceEeccCccEEEE---cCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeee
Confidence 34569999999876643211 223 2233455544 4689999998885443457778899999988877777
Q ss_pred Eee
Q 019229 184 DKA 186 (344)
Q Consensus 184 ~~a 186 (344)
++.
T Consensus 79 eKn 81 (142)
T 4i95_A 79 EKN 81 (142)
T ss_dssp EEE
T ss_pred ccc
Confidence 665
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=59.58 E-value=53 Score=28.15 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCCCCcCeeEEEEE-ecCCCCCCcccccccC-ceeceeeeEEEEeCCCCcEEEEEEeecceeeEEEEEEEEEecCCEEEE
Q 019229 104 TGSSLIEGRWQLMF-TTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILF 181 (344)
Q Consensus 104 a~s~LL~G~W~LvY-TT~~~t~splqr~~~G-v~~~~vfQ~I~ld~~~grv~NvV~f~~~~G~v~V~A~~~~~~~~Rv~V 181 (344)
....-|.|-|+|.+ .+.... ..| +..++.|..| .++|++.|.+-.......+...++|+..++....-
T Consensus 7 ~~~~~L~GvWQ~c~y~~~~~~-------~~~~l~~s~~~KIl---S~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E 76 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSESPD-------VPGALKPSNTFKVL---SDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKE 76 (142)
T ss_dssp GGSCCCCEEEEEEEEEESSTT-------SCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEE
T ss_pred cccccceEEeEEeeEeecCCC-------CCceEeecCceEEE---CCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeee
Confidence 34567999999884 333211 112 2233455544 46799999986554433467788999999998777
Q ss_pred EEEeeeeeecccccccCCCcccccCCCCcceEEEEEEecCCCceEEEe
Q 019229 182 QFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISR 229 (344)
Q Consensus 182 ~F~~a~l~~~ll~fk~P~Pvpf~Llg~~~kGwLdtTYLDd~~dLRIsR 229 (344)
..++... +|+ . ....--|..-.+|+ +-|+|+-
T Consensus 77 ~i~kni~----~p~----~-------~g~~n~L~fe~~~d-n~l~lsy 108 (142)
T 4gzv_A 77 SIEKNIH----LPM----L-------DNQDNILEFEIKDN-DYLHLKY 108 (142)
T ss_dssp EEEEESS----SGG----G-------TTEEEEEEEEEETT-TEEEEEE
T ss_pred eeccccc----Ccc----c-------cCCccEEEEEEccC-CEEEEEE
Confidence 7666542 111 1 13445666666776 3566654
No 3
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=41.86 E-value=1.2e+02 Score=25.55 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=26.0
Q ss_pred eEEEEEEecCCCc---eEEEeCCCCcEEEEEecCCcchhhhh
Q 019229 212 GWLDTTYLSPSGN---LRISRGNKGTTFVLQKKTEPRQTLLS 250 (344)
Q Consensus 212 GwLdtTYLDd~~d---LRIsRGnkGsvFVl~R~~~p~~~~~~ 250 (344)
+-+-+.++|+ + +=++..++..++||.|...+.+..++
T Consensus 114 ~~y~Vl~tD~--~Ya~~~v~~~~~~~~wILsR~p~l~~~~~~ 153 (177)
T 1qwd_A 114 GGYNVIALDR--EYRHALVCGPDRDYLWILSRTPTISDEVKQ 153 (177)
T ss_dssp EEEEEEEEBT--TSSEEEEECSSTTCEEEEESSSSCCHHHHH
T ss_pred ceEEEEEECC--CeeEEEEecCCCcEEEEEECCCCCCHHHHH
Confidence 5556899997 6 33455567789999998887654443
No 4
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=24.18 E-value=35 Score=28.58 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCCCCchhhhhcccceeEEEEecccCcchHHHHhhcCcCc
Q 019229 256 TQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMG 307 (344)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (344)
.-++|.|+||+..+|+-- -.|-.|+ |+||-.-.++.-.-.|...|.+
T Consensus 8 ~aLkELIeELvNitq~qK---~~LCNGS--MVWSVnlt~a~~~C~AleSL~N 54 (127)
T 3bpo_A 8 TALRELIEELVNITQNQK---APLCNGS--MVWSINLTTAGMYCAALESLIN 54 (127)
T ss_dssp HHHHHHHHHHHHHCC------CCSGGGC--CEECCC---CCCSHHHHHTTTT
T ss_pred HHHHHHHHHHHhcccccc---CCccCCc--eEEEEecccchhHHHHHHHhcc
Confidence 568999999999999763 3466775 9999754434433444444443
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=17.43 E-value=1.9e+02 Score=21.75 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhcccCCCCCCChh--------hHHHHHHHHHHHHhcCCCCCCCCCCCcCeeEEEEEec
Q 019229 59 TGEENQLIDALIGIQGRGRSASAR--------QLNDVECAVKVLEGLQGVPDPTGSSLIEGRWQLMFTT 119 (344)
Q Consensus 59 ~~lK~~LL~ala~t~~RG~~asp~--------qr~~IeelI~eLEalNPt~~Pa~s~LL~G~W~LvYTT 119 (344)
.+..+++|+.|... +-|..++.. .+..|...+..||..+-...--..+ |.|.+.-..
T Consensus 9 ~~~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~---~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP---PLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS---CEEEEC---
T ss_pred hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC---CeeEEeCcH
Confidence 45678899998865 434444322 2567999999999986432110112 899886554
No 6
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=16.93 E-value=83 Score=26.24 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=29.3
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhh
Q 019229 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAI 252 (344)
Q Consensus 214 LdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~ 252 (344)
+|+.|=+. =|-|.-++.|+.||+-|..+.+|.|+++=
T Consensus 42 ~D~e~~~g--VLti~f~~~~g~~VINkQ~P~~QIWLASp 78 (129)
T 3t3l_A 42 YDVSFGSG--VLTVKLGGDLGTYVINKQTPNKAIWLSSP 78 (129)
T ss_dssp CEEEEETT--EEEEECCTTCCEEEEEEETTTTEEEEECS
T ss_pred eeeecCCC--EEEEEEcCCCCEEEEeCCchhhHhheeCC
Confidence 56666555 77777776688999999999999999875
No 7
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=16.31 E-value=1.6e+02 Score=21.10 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCC
Q 019229 81 ARQLNDVECAVKVLEGLQGVP 101 (344)
Q Consensus 81 p~qr~~IeelI~eLEalNPt~ 101 (344)
....+.|.++++.|.. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4446788888888865 5643
No 8
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=16.17 E-value=82 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.2
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcch
Q 019229 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGT 256 (344)
Q Consensus 214 LdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~~ 256 (344)
+|+.|-+. =|-|.=+ .|+.||+-|..+.+|.|+++=++|.
T Consensus 30 ~D~e~~~g--VLti~f~-~~~~~VINkQ~P~~QIWlaSp~sG~ 69 (106)
T 1ew4_A 30 IDCEINGG--VLTITFE-NGSKIIINRQEPLHQVWLATKQGGY 69 (106)
T ss_dssp CEEEEETT--EEEEECT-TSCEEEEEEETTTTEEEEECSSCEE
T ss_pred EeeeccCC--EEEEEEC-CCCEEEEeCCchhhhheEecCCCce
Confidence 45555444 5555544 4779999999999999999877764
No 9
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=14.78 E-value=97 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=13.6
Q ss_pred ceEEEEEEecCCCceEEEeC
Q 019229 211 KGWLDTTYLSPSGNLRISRG 230 (344)
Q Consensus 211 kGwLdtTYLDd~~dLRIsRG 230 (344)
.-.||+. ||++|++++...
T Consensus 29 s~rldV~-~d~~G~f~l~~e 47 (54)
T 2fp7_A 29 SERVDVR-LDDDGNFQLMND 47 (54)
T ss_dssp CCEEEEE-ECTTSCEEEC--
T ss_pred cceEEEE-ECCCCCEEEccC
Confidence 3468888 999888887644
No 10
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=14.50 E-value=65 Score=27.14 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCCCchhhhhcccceeEEEEecccCcchHHHHhhcCcCc
Q 019229 256 TQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMG 307 (344)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (344)
+-++|.|+||+...|+.- -+|-.|. |+||-.- |++..-.|...|.+
T Consensus 27 ~aLkELIeELvNITqnqk---apLCNGS--MVWSVnl-t~~~~CaAleSL~N 72 (132)
T 3lb6_A 27 TALRELIEELVNITQNQK---APLCNGS--MVWSINL-TAGMYCAALESLIN 72 (132)
T ss_dssp HHHHHHHHHHHHHHHSCS---SCGGGGC--EEECCCS-SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCC---CCCcCCc--eEEEEec-cchHHHHHHHHhhc
Confidence 478999999999888662 3566674 9998644 34456666655655
Done!