Query 019229
Match_columns 344
No_of_seqs 140 out of 413
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 12:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ekga_ d.82.2.1 (A:) C-termin 27.7 14 0.00099 28.6 2.2 40 214-255 34-73 (119)
2 d1ik0a_ a.26.1.2 (A:) Interleu 24.3 14 0.0011 28.2 1.7 35 256-295 8-42 (113)
3 d1mu2a2 e.8.1.2 (A:3-429) HIV- 19.7 39 0.0028 31.1 4.1 42 77-118 22-74 (427)
4 d2fqla1 d.82.2.1 (A:61-172) C- 19.5 27 0.0019 26.5 2.4 40 213-255 39-78 (112)
5 d1ew4a_ d.82.2.1 (A:) CyaY {Es 18.7 31 0.0022 25.8 2.6 40 213-255 29-68 (106)
6 d2gyc31 a.108.1.1 (3:2-48) Rib 15.1 1.1E+02 0.0077 19.8 4.2 31 62-102 3-33 (47)
7 d1q67a_ b.55.1.7 (A:) Dcp1 {Ba 13.3 30 0.0022 29.3 1.2 25 231-255 40-64 (207)
8 d2gu3a1 d.17.1.6 (A:99-161) Un 13.2 47 0.0034 22.8 2.1 11 213-223 33-43 (63)
9 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 12.3 68 0.005 21.8 2.9 34 224-258 6-39 (79)
10 d1eq3a_ d.26.1.1 (A:) Parvulin 11.1 1.8E+02 0.013 20.5 5.1 88 237-336 8-95 (96)
No 1
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.65 E-value=14 Score=28.58 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=30.7
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcc
Q 019229 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (344)
Q Consensus 214 LdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~ 255 (344)
+|+-|-|. =|-|.=++.|+.||+-|..+.+|.|+++=.+|
T Consensus 34 ~D~e~~~g--vLti~f~~~~~~~VINkQ~p~~QIWlASp~sG 73 (119)
T d1ekga_ 34 YDVSFGSG--VLTVKLGGDLGTYVINKQTPNKQIWLSSPSSG 73 (119)
T ss_dssp CEEEEETT--EEEEECCTTCCEEEEEEEGGGTEEEEEETTTE
T ss_pred eeeeccCC--EEEEEECCCCcEEEEeCCCCceeEEEEcCCCC
Confidence 46666655 66666666688999999999999999875554
No 2
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28 E-value=14 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhcCCCCchhhhhcccceeEEEEecccCcc
Q 019229 256 TQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETD 295 (344)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (344)
+-.+|.|+||+..+|+-- -.|-.|. |+||-.....
T Consensus 8 ~aLkELIeeL~nitqnqk---apLCNGS--MVWsVnlta~ 42 (113)
T d1ik0a_ 8 TALRELIEELVNITQNQK---APLCNGS--MVWSINLTAG 42 (113)
T ss_dssp HHHHHHHHHHHHHHHSCS---SCSSSSC--EEECCCCSTT
T ss_pred HHHHHHHHHHHhcccccc---CcccCCc--eEEEEecCcc
Confidence 467899999999988764 3577775 9999765443
No 3
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=19.74 E-value=39 Score=31.14 Aligned_cols=42 Identities=7% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCC-----CCCCCCCCc------CeeEEEEEe
Q 019229 77 RSASARQLNDVECAVKVLEGLQGV-----PDPTGSSLI------EGRWQLMFT 118 (344)
Q Consensus 77 ~~asp~qr~~IeelI~eLEalNPt-----~~Pa~s~LL------~G~W~LvYT 118 (344)
...++++++++.+.|++|+..+-. ..|-.+|.+ .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 346899999999999999999744 334445544 489999854
No 4
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.53 E-value=27 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=29.7
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcc
Q 019229 213 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (344)
Q Consensus 213 wLdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~ 255 (344)
-+|+-|-+. =|-|.-++ |+.||+-|..+.+|.|+++=.+|
T Consensus 39 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSp~sG 78 (112)
T d2fqla1 39 IPDVELSHG--VMTLEIPA-FGTYVINKQPPNKQIWLASPLSG 78 (112)
T ss_dssp SCEEECCSS--EEEEEETT-TEEEEEEECCSSSSEEEEETTTE
T ss_pred ceeeeccCC--EEEEEECC-CCEEEEeCCCchhheeEecCCCC
Confidence 346666555 66666654 78999999999999999875544
No 5
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=18.71 E-value=31 Score=25.82 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=30.1
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEEecCCcchhhhhhhhcc
Q 019229 213 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (344)
Q Consensus 213 wLdtTYLDd~~dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~ 255 (344)
-+|+-|-|. =|=|.=++ |+.||+-|..+.+|.|+++=+.|
T Consensus 29 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSpsgg 68 (106)
T d1ew4a_ 29 DIDCEINGG--VLTITFEN-GSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp CCEEEEETT--EEEEECTT-SCEEEEEEETTTTEEEEECSSCE
T ss_pred CeeeeccCC--EEEEEECC-CCEEEEeCCCccceeeEECCCCC
Confidence 356666655 66666665 78999999999999999876544
No 6
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=15.07 E-value=1.1e+02 Score=19.84 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=23.7
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHhcCCCCC
Q 019229 62 ENQLIDALIGIQGRGRSASARQLNDVECAVKVLEGLQGVPD 102 (344)
Q Consensus 62 K~~LL~ala~t~~RG~~asp~qr~~IeelI~eLEalNPt~~ 102 (344)
|+++|++|+... --+|-++|..+|...++..
T Consensus 3 ke~Ileaia~MS----------VmdvveLi~amEEKFGVsa 33 (47)
T d2gyc31 3 KDQIIEAVAAMS----------VMDVVELISAMEEKFGVSA 33 (47)
T ss_dssp HHHHHHHHHHSC----------HHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHhh----------HHHHHHHHHHHHHHhCcch
Confidence 789999999862 2468889999988766543
No 7
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.26 E-value=30 Score=29.27 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=11.7
Q ss_pred CCCcEEEEEecCCcchhhhhhhhcc
Q 019229 231 NKGTTFVLQKKTEPRQTLLSAISTG 255 (344)
Q Consensus 231 nkGsvFVl~R~~~p~~~~~~~~~~~ 255 (344)
-.|++||+.|+..|+|..+.--.+.
T Consensus 40 vEGtLFVy~R~~~p~~~~lp~~~y~ 64 (207)
T d1q67a_ 40 YQGVLAIYLRDVSQNTNLLPVSPQE 64 (207)
T ss_dssp EEEEEEEEEECCC------------
T ss_pred ceeEEEEEEeccccccccCCccchh
Confidence 3499999999999987665543333
No 8
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=13.23 E-value=47 Score=22.83 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=8.6
Q ss_pred EEEEEEecCCC
Q 019229 213 WLDTTYLSPSG 223 (344)
Q Consensus 213 wLdtTYLDd~~ 223 (344)
-.|+||+|++|
T Consensus 33 vWEVtY~~~~~ 43 (63)
T d2gu3a1 33 LWEVTYLDKEG 43 (63)
T ss_dssp EEEEEEECTTS
T ss_pred EEEEEEEeCCC
Confidence 34999999954
No 9
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=12.34 E-value=68 Score=21.85 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.4
Q ss_pred ceEEEeCCCCcEEEEEecCCcchhhhhhhhcchhH
Q 019229 224 NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQV 258 (344)
Q Consensus 224 dLRIsRGnkGsvFVl~R~~~p~~~~~~~~~~~~~~ 258 (344)
+|+| +.+.+.+++-++...+-..++++|....++
T Consensus 6 ~ikv-~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i 39 (79)
T d1euvb_ 6 NLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 39 (79)
T ss_dssp EEEE-ESSSCEEEEEEETTSCTHHHHHHHHHHTTC
T ss_pred EEEE-CCCCeEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 4666 356677888899999999999999876654
No 10
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=11.15 E-value=1.8e+02 Score=20.49 Aligned_cols=88 Identities=15% Similarity=0.247 Sum_probs=58.9
Q ss_pred EEEecCCcchhhhhhhhcchhHHHHHHHHHhcCCCCchhhhhcccceeEEEEecccCcchHHHHhhcCcCccccceeeec
Q 019229 237 VLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQASVQIIT 316 (344)
Q Consensus 237 Vl~R~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (344)
||.+..+-....++.|..|....+...++ +..+ + .-.|. |=|-.......=+++|.--+.--||.+-+.+
T Consensus 8 Il~~~~~~a~~i~~~i~~g~~F~~lA~~~-S~d~--~-----~~~G~--lG~~~~~~l~~ef~~a~f~l~~g~is~~~~~ 77 (96)
T d1eq3a_ 8 ILCEKHGKIMEAMEKLKSGMRFNEVAAQY-SEDK--A-----RQGGD--LGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 77 (96)
T ss_dssp EEECCCSTHHHHHHHHTTTTSHHHHHHHH-CCCT--T-----TCCSE--EEEESSCCSSSHHHHHHHHCCSCCSSTTTBC
T ss_pred EEECCHHHHHHHHHHHHCCCCHHHHHHHh-CcCc--c-----ccccc--cceechHHhhHHHHHHHHhCCCCcCcccccc
Confidence 34566666788999999999988888775 3222 1 22365 6787777777778888877776677665555
Q ss_pred CCCccccCCCCcccccccch
Q 019229 317 SPSFTKSNNPSFHSFDLLDR 336 (344)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (344)
++-+.. .-.||-+-+.||
T Consensus 78 ~~pi~T--~~G~HIikv~~k 95 (96)
T d1eq3a_ 78 DPPVKT--KFGYHIIMVEGR 95 (96)
T ss_dssp SSCEEE--TTEEEEEEEEEC
T ss_pred CCCEec--CCeEEEEEEeeE
Confidence 544332 235888877765
Done!