BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019233
(344 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 231/355 (65%), Gaps = 27/355 (7%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MGMGFRLNLKW P+ T S RL ++SV+G+E SF+S R SF S SED S ++D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKSTSC---------------IGQD--------- 96
P K + CS QT ENDYS E ++ K C IG+D
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
AS S F LL+ENLD+LE FADS+ +RLER+I+ QLG+LGALKLF LSR +KTS
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213
DL TE E + N + D H+ K++V S +K +RK K R E++ LPS+ +
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
++G +P++ + +R LNSR +RL A+NEAEMSKGV++VANLERI+ TLE+E G ASL+
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQV 328
WA+AAGV ++VL+Q L FGWYCR+EL++ST LVL++ARNYRG+G+ F D+LQ
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQA 355
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 211/325 (64%), Gaps = 27/325 (8%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
++G+E SF+S R SF S SED S ++DP K + CS QT ENDYS E ++ K
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141
Query: 92 C---------------IGQD---------ASSRSDFRLLMENLDVLESTFADSDALRLER 127
C IG+D AS S F LL+ENLD+LE FADS+ +RLER
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201
Query: 128 EILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTE---EQKMNDSRDYHMGKILVPSK 184
+I+ QLG+LGALKLF LSR +KTS DL TE E + N + D H+ K++V S
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261
Query: 185 RKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAE 244
+K +RK K R E++ LPS+ +++G +P++ + +R LNSR +RL A+NEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MSKGV++VANLERI+ TLE+E G ASL+ WA+AAGV ++VL+Q L FGWYCR+EL++ST
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 305 RPLVLFLARNYRGLGIPFSDLLQVS 329
LVL++ARNYRG+G+ F D+LQ
Sbjct: 382 HSLVLYIARNYRGMGVAFEDILQAG 406
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 31/361 (8%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG+GFRL KW SP+QSH T S+ SS S RG E S N ARLSFLS +SE+ +
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS--------TSCIGQDASS------------- 99
K++ CS Q VEND + E ++ + +G D S
Sbjct: 61 SFKSFACSSA-AQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119
Query: 100 ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S L++NLD LE AD DAL+LER+IL QLG+LGAL+ FN+ LSR ++TSNVL
Sbjct: 120 ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARV-SEESIETSLLSLPSEA 212
DLS V TE E K + GK +V + +K +RK + R S+ +T+ LSLPS+
Sbjct: 180 DLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
+Q L +PT +R +S RR IARNEA+M++GV+V ++LERI+TTLE+E+G+ SL
Sbjct: 240 VQNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSL 297
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHA 332
+CWA+A G+ ++VL+Q L FGWYCR+ELIK+T LVL++ARNYRG+GI DL+Q
Sbjct: 298 SCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLG 357
Query: 333 L 333
L
Sbjct: 358 L 358
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 233/354 (65%), Gaps = 28/354 (7%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISEDSASYFQ 59
MG GFRLNLK P S + S+S VRGRE + +RLSFLS ISE+ +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETEEIRQK-------STSCIGQ-DASSRSD--------- 102
DP+K Y S+ QTVEN++S+ E + + IG + S + D
Sbjct: 61 DPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTK 119
Query: 103 -----FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLD 157
F LL+ENL++LE +FADSDA +LE +IL QLGKLGALKLFN+ L+R ++T+NVL+
Sbjct: 120 ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLE 179
Query: 158 LSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS-EESIETSLLSLPSEAL 213
+SDVHTE E +N + + K++V + +K +RK + R S + ++ L LPS +
Sbjct: 180 VSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
Q G ++PT+ S ++A S+ RRL IARNEAEM++G++V+A+LE+I+TTLE+E+ + SL+
Sbjct: 240 QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
CWA+AAG+ +VL+Q L+FGWYCR+ELIKSTR LVL+ ARNYRG GI DLLQ
Sbjct: 300 CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQ 353
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/346 (44%), Positives = 215/346 (62%), Gaps = 23/346 (6%)
Query: 1 MGMGFRLNL-KWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQ 59
MG G +LN+ + V P FTT+S STS RG+E F SARLS L+ ++S + +
Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETEE-IRQKSTSCIGQDASSRSD---------------- 102
D ++ + S TVENDYS E I ++S + D SD
Sbjct: 61 DTLRPHAGSSSVPLTVENDYSNLETTISKRSCKDLISDTEVLSDRDVSVYVRSVQSCSAS 120
Query: 103 -FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LM N+++LE+ +DS+ L+LE++IL QLG+LGAL+LF++ LSRI+ S DL +
Sbjct: 121 HFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMS---DLPGL 177
Query: 162 HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPT 221
TE+ K N +D + K LV SKRK +RKL+ R + S + + SE+ E
Sbjct: 178 ITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQAST-SKRCACKSESSIESSIHHV 236
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ +A + +RGRR IA+NEAEMS+G++VVA LE++K TLEKE+GKA SLNCWA+AAG+
Sbjct: 237 VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGI 296
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
E+VL+ L FGWYCR+EL+KS R LVL+L+R YRGLG+ DL+Q
Sbjct: 297 DEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQ 342
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 208/358 (58%), Gaps = 35/358 (9%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG FR NL+W +Q+H S +LS + +GRE +FNS RLSF S+I E+ S ++
Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS------------------------TSCIGQD 96
+K YTC QT ND EEI S +SC
Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S F +LMENLDVLE TF +S L LER+I+ QL KLGAL+ FN+ LSR +KTS+
Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180
Query: 157 DLSDV-------HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
D S + H QK ND D + V S +K R+ R + + + + L
Sbjct: 181 DSSGLPIEGGEDHNVNQKTNDQND----NVTVYSAKKAGRRSVKKRAMDNADKIASRLLT 236
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
+ A++E + + T+FS +++ NS RRL +A NEAEMS GV+VVANLERI+ TLEKESG+
Sbjct: 237 TRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRI 296
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
AS++CWA+AA V + L++ L FG +CR+EL++ST LV+FLA+ YR G+P DL+Q
Sbjct: 297 ASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQ 354
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 216/355 (60%), Gaps = 41/355 (11%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRSD- 102
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 103 --------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSL--LSLPSEA 212
V + +D K++D +D K++V S +K + K + R E + T++ SL +A
Sbjct: 183 VSNYAD------KVDDYKD----KVVVQSSKKKENKTRRKR---EFVSTAVSSQSLTLKA 229
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
QE L + +RA N++ +R+ +A+ EAEMSKGV+V+A LE+I+T +E+++ + ASL
Sbjct: 230 NQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASL 289
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ WA+A+GV E+VL++ L G+YC++ELI+STR LVL+LAR YRG+GI DLLQ
Sbjct: 290 STWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQ 344
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 25/298 (8%)
Query: 41 SARLSFLSTISEDSASYFQD-PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASS 99
++R SFLS+I E S S+ +D P+KA C+ + T EN Y E ++ ++ C+ D S
Sbjct: 76 ASRWSFLSSIKEGSRSHRRDHPLKACGCA---SATAENVYVELKDPKENIGMCLVGDQMS 132
Query: 100 RSD----------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRI 149
++ + LL +NL LE TF D+LR+ER+I+ Q+ KLGA +LFN+ LSR
Sbjct: 133 SAEKAHLSRSMLQYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS 192
Query: 150 VKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
+S L D T E + +++ K V S RK ++K +T + S S
Sbjct: 193 RVSSATSCLPDTGTPELVDDTTQEQ---KTFVHSTRKLRKKARTGNGDQGSSTIS----- 244
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
S EG+ P + + R +R I+RNEAEMS+GV++VA++ERI+T LE+E+GK
Sbjct: 245 SRTTWEGIDVPRV---RKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKV 301
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
AS++CWA+AAG+++++L +L FGWYCR+EL+KSTR LVLFLARNYRGLGI DL+Q
Sbjct: 302 ASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQ 359
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 207/351 (58%), Gaps = 26/351 (7%)
Query: 1 MGM--GFRLNLKW-VSPVQSH----FFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISE 52
MG+ GFRLN K S V H FF+ S LSS+S GRE FN RLS LST+ E
Sbjct: 1 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYE 60
Query: 53 DSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ-----KSTSCIGQ--DAS----SRS 101
+ + +D K + S + E D + E+ + +S S + + D S S
Sbjct: 61 EGETLQKDFRKTFAFSSA-LEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEES 119
Query: 102 DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LLMENL VLE TFADS+ALRLE+ I+ QL KLGAL+LFN L+ TS + + +
Sbjct: 120 HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHK 179
Query: 162 ---HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEG-L 217
EE K N D + GK++V S ++ ++ + + SI S SLP + QE L
Sbjct: 180 VLEQVEENKRNHKVDDYTGKVIVHSSKR--KENRRRKRGSVSIAPSSRSLPLDDNQEDPL 237
Query: 218 KQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+ +RA N++ +R IA+ E EMSKGV+V+A LE+I+T +E+++ + SL+ WA+
Sbjct: 238 RSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAE 297
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQV 328
+GV E+VL+Q L G+YCR+ELI+STR LVL+ AR YRG+GI DLLQV
Sbjct: 298 TSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQV 348
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 194/319 (60%), Gaps = 16/319 (5%)
Query: 14 PVQSHFFTTSSCRLSSTS--VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVN 71
P+ H+ + C +S VR SF + R SFLS++ E+S Y +DP+KA C+
Sbjct: 53 PLIKHWLSLLRCDQTSFPIFVRIPVSSFVATRWSFLSSVKEESRIYQKDPLKA--CASSA 110
Query: 72 TQTVENDYSETEEIRQK-STSCIGQDASSRS--DFRLLMENLDVLESTFADSDALRLERE 128
T EN + E ++ ++ + SSRS + LL +NL LE TF D+ R+ER+
Sbjct: 111 PYTAENVFLELKDPKENIGVGSAEKSCSSRSMLQYNLLAKNLLALEETFVALDSARMERD 170
Query: 129 ILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGK 188
I+ Q+GKLGA LF + LSR +S LSD TE ++ ++ V S+RK K
Sbjct: 171 IMLQMGKLGAADLFKTCLSRSRGSSVASCLSDT-TELVGTTPNQ-----QVFVSSRRKLK 224
Query: 189 RKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKG 248
+K + + V+ E+ + L + + P + R R +R I++NEAEMS G
Sbjct: 225 KKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRV---RRPPKYRKKRERISKNEAEMSTG 281
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
V++VA++ERI+T LE+ESGK ASL+CWA+AAG++E++L ++L +GWYCR+EL+KSTR LV
Sbjct: 282 VKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLV 341
Query: 309 LFLARNYRGLGIPFSDLLQ 327
LFLARNYRGLGI DL+Q
Sbjct: 342 LFLARNYRGLGIAHEDLIQ 360
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 188/304 (61%), Gaps = 21/304 (6%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQ 327
DL+Q
Sbjct: 360 DLIQ 363
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 188/304 (61%), Gaps = 21/304 (6%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRG+GI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHE 359
Query: 324 DLLQ 327
DL+Q
Sbjct: 360 DLIQ 363
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 174/285 (61%), Gaps = 29/285 (10%)
Query: 57 YFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDAS------SRS--DFRLLME 108
Y + P+KA C+ T EN Y E ++ + KS + Q +S SRS + LL +
Sbjct: 85 YQKYPLKACGCASATPCTAENVYVELKDPK-KSIGVVEQMSSAEKANLSRSMLQYNLLGK 143
Query: 109 NLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSD------VH 162
NL LE TF D+LR+ER+I+ Q+GKLGA +LF + LSR +S LSD V
Sbjct: 144 NLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRSRGSSVTSCLSDTGTELVVA 203
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222
TEEQ+ VPS+RK K+K + + +S + L + S + P +
Sbjct: 204 TEEQQ-----------TFVPSRRKLKKKARRSSLSTGKGDQGSLLIGSRTTWNDIDAPRL 252
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
++ R +R I+RNEAEMS G ++VA++ERI+T LE+ESGK AS++CWA+AAG++
Sbjct: 253 ---RKSSKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMN 309
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
E +L ++L +GWYCR+EL+KSTR LVLFL+RNYRGLGI DL+Q
Sbjct: 310 EILLMRNLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQ 354
>gi|356506634|ref|XP_003522082.1| PREDICTED: uncharacterized protein LOC100794777 [Glycine max]
Length = 196
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 63/226 (27%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH 162
FR+LMENL VLE TF DS+ALRLE+ I+ QLGK+GAL+LFN LSR V T V + +
Sbjct: 34 FRMLMENLCVLEETFVDSEALRLEKAIILQLGKVGALELFNVCLSRSVGTLLVSNYA--- 90
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222
K++D ++ K++V S +K + K +
Sbjct: 91 ---IKVDDYKE----KVVVQSSKKKENKTR------------------------------ 113
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
R R +A LE+I+T +E+++ ASL+ WA+ +GV
Sbjct: 114 ---------RKREFVLA--------------ELEKIRTAIEEDTKPVASLSTWAETSGVD 150
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQV 328
E+VL+Q L G+YC +ELI+S+R LV++LAR YRG+GI DLLQ+
Sbjct: 151 EKVLQQLLHCGYYCWDELIQSSRSLVVYLARKYRGMGIALDDLLQL 196
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 73/83 (87%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MS GV++VA++ERI+T LE+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KST
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQ 327
R LVLFLARNYRGLGI DL+Q
Sbjct: 61 RSLVLFLARNYRGLGIAHEDLIQ 83
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 136/247 (55%), Gaps = 25/247 (10%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYES 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
N++ L ++ EEQ + ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGNIIKLDPEIPLEEQNV---------VVIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QVSRHAL 333
Q + +
Sbjct: 350 QAGKMGV 356
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 135/244 (55%), Gaps = 25/244 (10%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 449 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 508
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 509 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 559
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 560 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 614
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 615 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 674
Query: 327 QVSR 330
Q +
Sbjct: 675 QAGK 678
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 25/247 (10%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 366 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 425
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 426 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 476
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 477 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 531
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 532 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 591
Query: 327 QVSRHAL 333
Q + +
Sbjct: 592 QAGKMGV 598
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 25/247 (10%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 183
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QVSRHAL 333
Q + +
Sbjct: 350 QAGKMGV 356
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 19/243 (7%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR--IVKTSNV 155
SS ++ LLM+N+ LES+ A D + LER IL + +LGAL+LFN+ SR + +TS+
Sbjct: 551 SSSLEYSLLMQNIHALESSLAGQDLVLLERNILVHIEQLGALQLFNASRSRAIVTQTSHE 610
Query: 156 LDLS--------DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207
D + D T + +D +++V S + +RKLK R E+ + +
Sbjct: 611 SDFALPGSVAEFDPVTPLGEESD-------RLIVRSGKSQERKLKRIRSLEKVSGVCVKA 663
Query: 208 LPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG 267
+ + + F AE N GRR +I R ++ + ++ ANLE+I+ + KE G
Sbjct: 664 SSRKQKKSCKSSSSQFIAEWK-NYPGRRRSIVREQSALLMTIKECANLEKIRENMVKE-G 721
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ S + WA+AAGV E VLK L G++CRE L+ +T LV ++AR Y G+G F DLLQ
Sbjct: 722 QEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERLLVTTEWLVKYIARTYTGMGTAFEDLLQ 781
Query: 328 VSR 330
+
Sbjct: 782 AGK 784
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 136/268 (50%), Gaps = 49/268 (18%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 555 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 614
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 615 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 665
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEM---------SKGVQV------ 251
+ ++ + Q F AE N GRR +I R ++ + GVQ
Sbjct: 666 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKRRSADAGVQWKASAAE 721
Query: 252 ---------VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
ANLE+I+ L K+ G S WA+AAG+ E +L+ L G+ CRE L+
Sbjct: 722 ERRRASAAECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLV 780
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQVSR 330
+T LV ++A+ Y G+G F DLLQ +
Sbjct: 781 TTEWLVKYIAKTYAGMGTAFEDLLQAGK 808
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 46/352 (13%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSR-DYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPT 221
++ + D M ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQM--VVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASS 257
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 258 SQFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGV 316
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQ + +
Sbjct: 317 DEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGV 368
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 166/351 (47%), Gaps = 44/351 (12%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPTI 222
++ ++ ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQ-VVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASSS 258
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 259 QFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVD 317
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQ + +
Sbjct: 318 EAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGV 368
>gi|255638784|gb|ACU19696.1| unknown [Glycine max]
Length = 207
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 32/199 (16%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRSD- 102
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 103 --------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRD 173
V + +D K++D +D
Sbjct: 183 VSNYAD------KVDDYKD 195
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 157/321 (48%), Gaps = 37/321 (11%)
Query: 33 RGREGSFNSARLSFLSTISED---SASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKS 89
R R+G+ A S + I+ED +A+ + V A + + ND + +R ++
Sbjct: 62 RSRDGATALASSSGVLQIAEDKSSAANLTKHKVSA-------ERKLLNDALDRTGVRYET 114
Query: 90 TSCIGQDASSRSD---------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALK 140
S + ++ SS D +RLLM+NL+ LE++ D LE +IL+QLG LG+
Sbjct: 115 ESWMDEETSSWMDRDLTDSDLRYRLLMQNLEELETSLVGKD---LEMDILEQLGALGS-- 169
Query: 141 LFNSHLSRIVKT------SNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTA 194
FN+ ++R V ++LD D E ++ ++ ++V S + +RKL+
Sbjct: 170 -FNASVARGVSALHGRPDGSLLD--DPEPETTPLDAGQEDSQ-VVVVRSGKSQERKLRRM 225
Query: 195 RVS--EESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV 252
R S E+ TS+ P ++ K + + G+R I R ++ + ++
Sbjct: 226 RASSDEKGSRTSVKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKEC 285
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE+I+ + KE G+ S + WA+AAGV E L L G+ CR+ L+ +T LV +A
Sbjct: 286 AGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIA 344
Query: 313 RNYRGLGIPFSDLLQVSRHAL 333
R Y G+G DLLQ + +
Sbjct: 345 RTYTGMGTALDDLLQAGKMGV 365
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 13/243 (5%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSH----------LSRIVKT 152
+ LLM+NL+ LE++ A D LE +IL + +LGAL+ F++ L+
Sbjct: 83 YGLLMQNLEELETSLAGKDLKILENDILAHIQQLGALRSFDASTAVGATLLDTLTHDQPD 142
Query: 153 SNVLD--LSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
S++LD + + E +++ ++V S + +RKLK R SE+ S+ P
Sbjct: 143 SSLLDQQIIEFDPETTPLDEEEQEDSQVVVVRSGKSEERKLKRVRASEKGSRISVKVNPR 202
Query: 211 EALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
+ K + + GRR I R ++ + ++ A+LE+I+ + KE G+
Sbjct: 203 RPKKSSRKASSSQFISEWKSHPGRRRIIVREQSALLATIKECASLEKIREKMVKE-GQEV 261
Query: 271 SLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSR 330
S + WA+AAG+ E L L G+ CRE L+ +T LV +AR+Y G+G DLLQ +
Sbjct: 262 SYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQAGK 321
Query: 331 HAL 333
+
Sbjct: 322 MGV 324
>gi|356494816|ref|XP_003516279.1| PREDICTED: uncharacterized protein LOC100779115 [Glycine max]
Length = 156
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 60/184 (32%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH 162
FR+LMENL VLE TF DS+ALRLE+ I+ QLGK+GAL+LFN LSR V TS V +
Sbjct: 33 FRMLMENLCVLEETFVDSEALRLEKAIILQLGKVGALELFNVCLSRSVGTSLVSNYV--- 89
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222
K++D +D K++V S +K + K
Sbjct: 90 ---VKVDDYKD----KVVVQSSKKKENK-------------------------------- 110
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
+R +R +A V+A LE+I+T +E+++ ASL+ WA+A+ V
Sbjct: 111 --------TRRKREFVA----------TVLAELEKIRTAIEEDTKPVASLSTWAEASEVD 152
Query: 283 ERVL 286
E+VL
Sbjct: 153 EKVL 156
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 13/158 (8%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPS--------EALQE-GLKQPTIFSAERAL 229
I V SKR+ +RK + R +E+++ TS+LS S ++QE P + RA
Sbjct: 220 ITVKSKRQTERKARRTRAAEKTV-TSVLSFKSGSSSRKKRNSVQEVDYSDPLRYL--RAT 276
Query: 230 NSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289
+ R LT A E E+S+G+Q + LER++ L + G + WA AAGV++R L++
Sbjct: 277 TNTSRLLT-ATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKR 335
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L +G C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 336 LNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 373
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ F DL+Q L
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGL 335
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ F DL+Q L
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGL 335
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 273 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 332
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 333 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 365
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S+G+Q + LER++ L + G + + WA AAGV ++ L++ + G
Sbjct: 271 KLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++ +IKS LV+ +A+NY+G G+ F DL+Q
Sbjct: 331 QCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQ 363
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 193 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 252
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G C+ ++KS LV+ +AR + G G+ FSDL+Q
Sbjct: 253 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G C+ ++KS LV+ +AR + G G+ FSDL+Q
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 39 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 98
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G C+ ++KS LV+ +AR + G G+ FSDL+Q
Sbjct: 99 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 133
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQV 328
G YC+ ++ S LV+ +AR + G G+ DL+QV
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQV 355
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 259 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 359
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|356506664|ref|XP_003522096.1| PREDICTED: uncharacterized protein LOC100812349 [Glycine max]
Length = 133
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 10/110 (9%)
Query: 86 RQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSH 145
R+ ST C ++ FR+LMENL VLE TF DS+AL LE I+ QLGK+GAL+LFN
Sbjct: 16 REVSTVCTKIESFRAQHFRMLMENLCVLEETFVDSEALSLENPIILQLGKVGALELFNVC 75
Query: 146 LSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTAR 195
LSR V TS V + + K++D +D K++V S +K + K + R
Sbjct: 76 LSRSVGTSLVSNYA------VKVDDYKD----KVVVQSSKKKENKTRRKR 115
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + G+ + WA AAGV ++ L++ + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL + E E+S G+Q + LE++ L+ GK+ S WA AAG+ +R L++ L G
Sbjct: 276 RLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGT 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 336 FCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQ 368
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
RRL A+ E E+S+G+Q LE I+ + +G + WA AAG E L++ L++G
Sbjct: 234 RRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLSYG 293
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
YC+ ++KS LV+ +A+ + G G FSDL+Q L
Sbjct: 294 IYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGL 333
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G C+ ++KS LV+ +AR + G G+ FSDL+Q
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 276 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 336 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 368
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLP--SEALQEGLKQPTIFSAE----RALNSR 232
I V S+R+ +RK + AR E++ + + P + + G Q +S R S
Sbjct: 209 IAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTST 268
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R LT A E E+S +Q + LER++ L + G + WA AAGV +R L++ +
Sbjct: 269 SRLLT-ASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINH 327
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 362
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 279 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 338
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 339 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 371
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+S+G+Q + LERI+ L++ G S WA AAGV + L++ L +G C++++I
Sbjct: 275 EVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMI 334
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
KS LV+ +A+NY+G G+ DL+Q
Sbjct: 335 KSNVRLVISIAKNYQGTGMNLQDLVQ 360
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + +G + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q L
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGL 324
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 157 DLSDVHTE----EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIE--TSLLSLPS 210
DL H E +++++DS I V S+R+ +RK K R +E++ TS S
Sbjct: 179 DLEPSHEELERLQEQLSDS-------IAVRSRRQTERKAKRVRATEKATTNFTSFKPGSS 231
Query: 211 EALQEGLKQPTIFSAE----RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ Q +S R S R LT E ++S G+Q + LE+I+ L +
Sbjct: 232 SRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPT-EEIKLSAGIQDLLKLEKIQEDLAERF 290
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G + WA AGV ++ L++ L +G +C++++IKS LV+ +A+NY+G G+ DL+
Sbjct: 291 GSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLV 350
Query: 327 Q 327
Q
Sbjct: 351 Q 351
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + SG + WA AAG E+ L++ LA
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G Y + ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 308 GIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGL 348
>gi|356537409|ref|XP_003537220.1| PREDICTED: uncharacterized protein LOC100796166 [Glycine max]
Length = 178
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 10/93 (10%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH 162
FR+LMENL VLE TF D +A RLE+ I+ QLG++GAL+LFN LSR V TS V + +
Sbjct: 78 FRMLMENLCVLEETFVDYEAWRLEKAIILQLGEVGALELFNVCLSRSVGTSLVTNYA--- 134
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTAR 195
K++D +D K++V S +K + K + R
Sbjct: 135 ---VKVDDYKD----KVVVQSSKKKENKTRRKR 160
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 124 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 183
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q
Sbjct: 184 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 218
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 318
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 56/86 (65%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + S+G+Q + LE+++ L ++ G + WA AGV ++ L++ L +G +C+E++I
Sbjct: 280 EIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 339
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
KS LV+ +A+NY+G G+ DL+Q
Sbjct: 340 KSNIRLVISVAKNYQGSGMSLQDLVQ 365
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 223 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 282
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q
Sbjct: 283 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 317
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + +G + WA AAG E L++ L
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
G +C+ ++ S LV+ +AR + G G+ DL+Q L
Sbjct: 308 GIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGL 348
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + LV+ +A+ Y+ G+ F DLLQ
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 180 LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALN-----SRGR 234
+V SKR+ +R+ K R + + S +P + + K F + AL +
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNNMDSEGYVP-QKINAKKKMKQGFDTDDALQLFLWGPETK 245
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 246 QLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRGR 305
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + LV+ +A+ Y+ G+ F DLLQ
Sbjct: 306 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 185 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 244
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + LV+ +A+ Y+ G+ F DLLQ
Sbjct: 245 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 278
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LERI+ L++ G + WA AA V + L++ L +
Sbjct: 265 RLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAI 324
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 325 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 357
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 58/93 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S +Q + LE IK+ LE+E G+ A++ W++A G+ + + L G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ +++++ S LV+ +A+NY+G G+ DL+Q
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S LK + G
Sbjct: 244 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRG 303
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + LV+ +A+ Y+ G+ F DLLQ
Sbjct: 304 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 337
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 255
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
+++I LV+ +A+NY+ G+ DL+Q L
Sbjct: 256 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGL 294
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 352
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
+++I LV+ +A+NY+ G+ DL+Q L
Sbjct: 353 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGL 391
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
++ +S LV+ +AR Y G G+ DL+Q D CC L
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQ---------DGCCGL 338
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
++ +S LV+ +AR Y G G+ DL+Q D CC L
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQ---------DGCCGL 338
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 245 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 304
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
++ +S LV+ +AR Y G G+ DL+Q D CC L
Sbjct: 305 KMARSNFRLVIHVARKYEGCGLDIQDLVQ---------DGCCGL 339
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E ++ VQ + LE + LE + G+ ++ WA+A G+S + L+ + G CRE
Sbjct: 265 AKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCRE 324
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
++ +S LV+ +AR Y+G G+ DL+Q D CC L
Sbjct: 325 KMARSNFRLVIHVARKYQGYGLDIEDLVQ---------DGCCGL 359
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E E+ +Q + NLE +K LE + G+ +L WAQA G+S VLK L G
Sbjct: 233 KQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSG 292
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + +V+ +A+ Y+ G+ DLLQ
Sbjct: 293 NRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
LER++ L + G + WA AAGV++R L++ L +G C++++IKS LV+ + +N
Sbjct: 7 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIXKN 66
Query: 315 YRGLGIPFSDLLQ 327
Y+G G+ DL+Q
Sbjct: 67 YQGAGMNLQDLVQ 79
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 59/94 (62%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L + E+++ +Q + LE +KT+L+ + G+ ++ WA+ AG++ R +K L G
Sbjct: 265 KQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCG 324
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI++ LV ++A++Y+G G+ DLLQ
Sbjct: 325 NRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQ 358
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 58/94 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 269 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 328
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI++ +V+ +A++Y+G G+ DLLQ
Sbjct: 329 NRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 362
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 58/94 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 138 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 197
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI++ +V+ +A++Y+G G+ DLLQ
Sbjct: 198 IRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 231
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E + +Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
++ +S LV+ +AR Y G G+ DL+Q D C L
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQ---------DGCSGL 370
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ VQ + +LE +K + + G+ +L WA A G+S V++ L G
Sbjct: 246 KQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSG 305
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + +V+ +A+ Y+G G+ DLLQ
Sbjct: 306 NRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQ 339
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L + E E+++G+Q + +E +K L ++ G+ +L WA+A G L+ + G
Sbjct: 316 KLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESRIKSGQ 375
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++ ++ S LV+ +A+ Y+G G+ DL+Q
Sbjct: 376 ACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQ 408
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE++ +S
Sbjct: 1 MFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSN 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
LV+ +AR Y G G+ DL+Q D CC L
Sbjct: 61 FRLVIHVARKYEGCGLDIQDLVQ---------DGCCGL 89
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 56/94 (59%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ G++ R+L L G
Sbjct: 272 KQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSG 331
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI++ +V+ +A++Y+G G+ DLLQ
Sbjct: 332 SRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 365
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 259 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 318
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
R++LI + +V+ +A+ Y+G G+ DLLQ
Sbjct: 319 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQ 352
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 270 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 329
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
R++LI + +V+ +A+ Y+G G+ DLLQ
Sbjct: 330 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQ 363
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE++ +S LV
Sbjct: 251 AQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLV 310
Query: 309 LFLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
+ +AR Y G G+ DL+Q D C L
Sbjct: 311 IHVARKYEGYGLDIQDLVQ---------DGCSGL 335
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
+L A E +S+ +Q + LE++K+ L++E G+ S+ W++A G+ + + +
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKE 346
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G Y +++++ S LV+ + +NY+G G+ DL+Q
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQ 381
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE++ +S LV+
Sbjct: 212 QILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVI 271
Query: 310 FLARNYRGLGIPFSDLLQVSRHALAFIDSCCAL 342
+AR Y G G+ DL+Q D C L
Sbjct: 272 HVARKYEGYGLDIQDLVQ---------DGCSGL 295
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 212 ALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
A++ G K+P+ S L G L A E E++K +Q + +LE I+ L +E+G
Sbjct: 190 AMRIGNKRPSTDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 271 SLN--CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L+ WA AAG++ L+Q L G + E+I++ LV+ +A+ Y + F DL+Q
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQ 308
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 55/93 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A E +S+ +Q + LE+I+ L+++ G+ +L+ W+QA + + L+ + G
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGR 341
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+++L+ S LV+ + +NY+G G+ DL+Q
Sbjct: 342 SAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQ 374
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +++++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +++++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ +Q + +E ++ E+E G+ + A A G++ER L+Q L + ++I
Sbjct: 73 EVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQVAKRKMI 132
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 133 RSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ LE+ + + WA+AAG+ + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGMPLKDFR 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 135 RRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN--CWAQAAGVSERVLKQHLAFGWYC 296
A E E++K +Q + +LE I+ L +E+G A + WA AAG++ + L Q L G
Sbjct: 32 AGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDGKSA 91
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ E+I++ LV+ +A+ Y + F DL+Q
Sbjct: 92 KNEMIQANLRLVVSIAKKYANSNMSFQDLIQ 122
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +K L+ + G+ ++ WA G+S L+ L G
Sbjct: 9 KKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+E+LI + +V+ +A+NY G G+ F DLLQ
Sbjct: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQ 102
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+SK V ++ +LE+ + + +E GK+ + + WAQ G + V L++H+ G +E
Sbjct: 296 EIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKER 355
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y G+ DL+Q
Sbjct: 356 MVTANLRLVVSIAKRYSNRGVALQDLIQ 383
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ +Q + L+ +K L+ + + +L WA+A G++ + L+ L
Sbjct: 260 KKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVF 319
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQV 328
RE+LI + +V+ +A+ Y+G G+ DLLQV
Sbjct: 320 QTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQV 354
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 59 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDK 118
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WAQ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 119 EWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 172
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+S+ V V+ +LER + + ++ GK+ + WA+ G E V L++H+ G +E
Sbjct: 426 EVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDGRSAKER 485
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y G+ DL+Q
Sbjct: 486 MVTANLRLVVSIAKRYSNRGVALQDLIQ 513
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 151 KTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
+T N D+ E ++ + DY ++ +P+K+ RK KT+R E + +
Sbjct: 27 QTRNEGDIDYSALAEAQIKEGTDY--VELTLPTKKS--RKAKTSRRKETATK-------- 74
Query: 211 EALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
K+P + R L GR RL A E E+++ + + LER++ L + +
Sbjct: 75 -------KKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESR 127
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ WA+AAG+ + ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 128 VPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 151 KTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
+T N D+ E ++ + DY ++ +P+K+ RK KT+R E + +
Sbjct: 11 QTRNEGDIDYSALAEAQIKEGTDY--VELTLPTKKS--RKAKTSRRKETATK-------- 58
Query: 211 EALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
K+P + R L GR RL A E E+++ + + LER++ L + +
Sbjct: 59 -------KKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESR 111
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ WA+AAG+ + ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 112 VPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 170
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 58 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDK 117
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA+ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 118 EWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + + +Q LER++ LE G A S WA +++ L + LA +E +I
Sbjct: 246 EVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMI 305
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFIDSC 339
+ LV+ +AR YRG G+ F DL+Q + + +C
Sbjct: 306 SANLRLVVSMARGYRGRGLAFPDLIQ--EGTMGLVKAC 341
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L +E + N WA A G+ +
Sbjct: 87 LQEIGRIRLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGMPLPAFR 146
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 147 HRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ ++ + +E +++ L +E G+ S A A G++ER L+ L + ++I
Sbjct: 115 EVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRVAKRKMI 174
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 175 RSNLRLVVSIAKRYINRGVPFLDLIQ 200
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ + L+ K L++E G A+ W+QAAG+SE L L G + ++I
Sbjct: 38 EIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGERAKRKMI 97
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ LV+ +A+ Y+ + F DL+Q
Sbjct: 98 EANLRLVVAVAKKYQKRNLEFLDLIQ 123
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + +E +K +L G+ L A A +SE ++Q+L G + +I
Sbjct: 100 EIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRAAKRRMI 159
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 160 RSNLRLVVSIAKRYLNRGVPFLDLIQ 185
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +++K VQ + +++++ L+ G+ + AQ ++ER L+ L G + ++I
Sbjct: 85 EVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ +L+++ + WA A ++ + L G
Sbjct: 85 RLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNMTLPAFRHRLHLGR 144
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 145 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + LE I+ L + + +L WA+A +S LK+ + G ++++
Sbjct: 28 QEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQAKDKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++S LV+ +A+ YRG + DL+Q
Sbjct: 88 MRSNLRLVVSIAKKYRGSKLDMMDLIQ 114
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + L+ K L+ G+ +L WA G+S R L++ L G
Sbjct: 255 KQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCG 314
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+++LI + LV+ +A+ Y+G G+ DLLQ
Sbjct: 315 NRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQ 348
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ VQ + ++ + L +E G+ + AQA ++ER + L G + ++I
Sbjct: 82 EIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMI 141
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 142 RSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L K G+ + WA+A + ++ L G
Sbjct: 77 RLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGR 136
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 137 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 169
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 183
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E+ G QV A + + K+ LEK+ + SL W+++A +SE L + L
Sbjct: 30 RVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKL 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 90 GQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 235 RLTIARNEAEMSKGVQVVA---------NLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
+L A E +S+ +QV LE+++ L+++ G+ + + W+ A G+++ +
Sbjct: 271 KLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVGMNQTL 330
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALAFI 336
+ + G +++L+ S LV+ + +NY+G G+ DL+Q R +L I
Sbjct: 331 FELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQ--RGSLGLI 379
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + L +K L ++ G++A+L A A ++E+ L+ + G + ++I
Sbjct: 80 EIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQVAKSKMI 139
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 140 RSNLRLVVSIAKRYLNRGVPFLDLVQ 165
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER +T LE G + WA+ + + +
Sbjct: 89 LQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 149 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 183
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + E I+ L+ E + + A G+SER L+ L G + ++I
Sbjct: 92 EVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRVAKRKMI 151
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 152 RSNLRLVVSIAKRYLNRGLPFLDLIQ 177
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + ++ WA A + K
Sbjct: 82 LQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDMELPKFK 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 142 RRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L+++ + WA+A + + L
Sbjct: 91 GRIRLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLH 150
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 151 IGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ + + G+ + W+QA + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQ 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +++++ S LV+ +A+ Y G+ F DL+Q
Sbjct: 135 RRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + NLE I E E+G S WA + +
Sbjct: 121 LQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFR 180
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 181 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 220
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +LE+ + KE+GK + WAQAA +S R L +A
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISRRELHSAIAS 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN-----CWAQAAGVSERVLKQHL 290
L E E++ +Q + LE ++ LE+E+ + + WA AA V+ER LK+ L
Sbjct: 268 LLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERL 327
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++I++ LV+ +A+ Y + F DL+Q
Sbjct: 328 DAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQ 364
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L+++ + + WA+A + + L
Sbjct: 93 GRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQFRHRLH 152
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 153 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A V + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQFRYRLHIGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I++TL + G+ + WA A+ + R + L G
Sbjct: 88 RLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIG 147
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L+ + + WA+A + + L
Sbjct: 92 GRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTFRYRLH 151
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 152 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 187
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WAQ ++ + L G
Sbjct: 84 RLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDMALPAFRHRLHLGR 143
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 144 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 176
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E ++ V+++ E I+ L ++ + S WAQA G+S R L++ L G + ++
Sbjct: 82 EVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGKVAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E + L +E + + W QA G +++ + L G +
Sbjct: 73 AQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGRTAK 132
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 133 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 162
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ +A++E + L ESG + + A +S + L++ L G + ++I
Sbjct: 84 EIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRLAKRQMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + ++ ++ LE E G+ S N A ++E+ L+ L G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + WA+ + +
Sbjct: 76 LQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFR 135
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
Q L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 136 QRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + LE++K L + +L WA+AA ++++ LK+ ++
Sbjct: 20 RVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQKELKKRMSI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +++++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQ 114
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L ++ + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L ++ + WA+A + + L
Sbjct: 90 GRIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLH 149
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LERI+ L ++ + + WA+A + + L
Sbjct: 90 GRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLH 149
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 LGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L ++ + + WA+A +S +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L ++ + + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 203 TSLLSLPSEALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKT 260
+ L S P + G K+P + R L GR RL A E E+++ + + LERI+
Sbjct: 49 SKLASTPRRTAERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRE 108
Query: 261 TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E E + S W + + R ++ L G ++++++S LV+ +A+ Y G+
Sbjct: 109 RIEDELDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 168
Query: 321 PFSDLLQ 327
F DL+Q
Sbjct: 169 SFQDLIQ 175
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++K V+ + +++ ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 96 EVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRVAKRKMI 155
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 156 RSNLRLVVSIAKRYLNRGVPFLDLIQ 181
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L WA+AAG++ + +A+G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 140 LRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 195
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA-----SLNCWAQAAGVSERVLKQH 289
RL A E E+++ + + +ER++ L +E G A + WA+ G++ +
Sbjct: 116 RLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPWAKELGMTVPAFRHR 175
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 176 LFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L ++ + + WA+A + + L
Sbjct: 91 GRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLH 150
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 151 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERVLKQHLAFGWYCREEL 300
E E++ V+ + + E + L++ + + WAQA ++ ER L+ L G + ++
Sbjct: 82 EIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGRCAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 78 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+V+ E I+ L+++ + + W +A + S R L+ L G + ++
Sbjct: 75 EVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGRVAKRKM 134
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 135 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + +E + L+K+ + + G+S++ L+ L G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 193
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 72 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 131
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 132 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE+E G+ S + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++ + VQ + LE +K L + G+ S+ W +AA + L+ L G
Sbjct: 36 LLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADLEIAELQTLLEKGHK 95
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++I + LV+ +A+ YR + DL+Q
Sbjct: 96 AKQKMITANLRLVVTIAKKYRDRNLELLDLIQ 127
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER-VLKQHLAFGWYCREEL 300
E ++ VQ + L ++ L+ G+ S WA A G + L+ + CREEL
Sbjct: 23 EVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMKACREEL 82
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALA 334
I+ LVL +A+ Y G+ F+DL Q LA
Sbjct: 83 IQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLA 116
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + A+ WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+ + E + L+ + + S WAQA G+ +ER L+ L G + ++
Sbjct: 79 EIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGRAAKRKM 138
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 139 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 218 KQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
KQ T S L GR RL A E E+++ + + LERI+ L + + WA
Sbjct: 77 KQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWA 136
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 137 EAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 187
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L ++ + + WA+A + + L
Sbjct: 90 GRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLH 149
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 IGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ I+ +LE+ + + WAQAA +SE L + L
Sbjct: 28 RVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQ 87
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 88 GRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 122
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
++K VQ L+ IK TL K + + WA+AA +SE L++ +A G +E+++++
Sbjct: 32 LAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISEEELRRTMAAGKAAKEKMVEAN 91
Query: 305 RPLVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y + DL+Q
Sbjct: 92 LRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I S LV+ +A+ Y G+PF DL+Q
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 150
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L G+ S WAQA+ +S LKQ +A G Y + ++
Sbjct: 28 QEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEYAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+++ LV+ +A+ Y + DL+Q
Sbjct: 88 VEANLRLVVSVAKKYTKRNVDLLDLIQ 114
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + + WA + + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAFRHRLYVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 136 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 168
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ V+ + ++ ++ LE++ G +A+ A ++E+ L+ L G + ++I
Sbjct: 104 EVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRVAKRKMI 163
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 164 RSNLRLVVSIAKRYLNRGVPFLDLIQ 189
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LERI+ ++ + + WA A + ++ L
Sbjct: 104 GRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLY 163
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 164 QGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREELIKSTRPLV 308
Q+ +L+R T LE WAQA G+ +ER L+ L G + ++I+S LV
Sbjct: 98 QLQIDLQRPPTKLE-----------WAQAMGLQNERQLENRLYRGRSAKRKMIRSNLRLV 146
Query: 309 LFLARNYRGLGIPFSDLLQ 327
+ +A+ Y G+PF DL+Q
Sbjct: 147 VSIAKRYLNRGVPFLDLIQ 165
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E++ G VQ + +LE+++ LE +GK S A AG+S R L + L
Sbjct: 30 RVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKR 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +E ++ + LV+ +A+ Y + DL+Q
Sbjct: 90 GVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 124
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE++ G + S + A ++E+ L+ L G + ++I
Sbjct: 107 EVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRVAKRKMI 166
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 167 RSNLRLVVSIAKRYLNRGVPFLDLIQ 192
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ A L+ K L K G+ S WA+ AGVS + LKQ L
Sbjct: 21 RVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALED 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 81 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I S LV+ +A+ Y G+PF DL+Q
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 150
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 214 QEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+ G K+P + R L GR RL A E E+++ + + LERI+ + + S
Sbjct: 52 ERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPS 111
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA+ + ++ L +G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 112 DAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 136 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFR 195
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 196 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 235
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 26 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 85
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ +S R LV+ +A Y+G G+ DL+Q
Sbjct: 86 INQSYRRLVVSIAARYQGKGLSLQDLIQ 113
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMS--KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S K VQ + L+ K TL+K+ S AQ +SE +K+
Sbjct: 29 RVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++I + LV+ +A+ Y+G + F DL+Q
Sbjct: 89 GVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQ 123
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 133 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 192
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ +S R LV+ +A Y+G G+ DL+Q
Sbjct: 193 INQSYRRLVVSIAARYQGKGLSLQDLIQ 220
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHL 290
GR RL A E E+++ + + +LE I+ T + G+ + WA A + R + L
Sbjct: 90 GRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRL 149
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 HIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 139 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 198
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 199 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 238
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 146 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 205
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 206 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 245
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ +L E G+ AS A ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA---SLNCWAQAAGVSERVLKQHLA 291
RL A E +++ VQ + + E ++ TL +E G+AA WA+A VS L+ +
Sbjct: 69 RLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAARS 128
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G R L + LV+ +A+ YR G+ DLLQ
Sbjct: 129 RGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQ 164
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + I+ L +E G + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 143 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 202
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 203 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 242
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 213 LQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+Q KQ T S L GR RL A E E+++ + + LER++ L + +
Sbjct: 60 VQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPH 119
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA A + + L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 120 DREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + + WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++I++ LV+ +ARN + + F DL+Q
Sbjct: 89 GERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQ 123
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + ++ LER +T LE G + WA+ G + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 143 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
+ E E++K +Q + E++ L + G+ + + A AAG +E L L +
Sbjct: 88 KEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRR 147
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I S LV+ +A+ Y G+PF DL+Q
Sbjct: 148 MISSNLRLVVSIAKRYLNRGVPFLDLIQ 175
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 31 RVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +E ++ + LV+ +A+ Y + DL+Q
Sbjct: 91 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + + WA+AA +S+R + +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKREFRSIVES 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 47 RVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 106
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +E ++ + LV+ +A+ Y + DL+Q
Sbjct: 107 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 142
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA + + + L G
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGR 140
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 141 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 173
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAFRYRLHVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 136 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 168
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 220 PTIFSA----ERALNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNC 274
PT +S+ L+ GR + R E + K VQ + +K LE++ + A+L
Sbjct: 20 PTTYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLE 79
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA+ VSE+VLKQ + G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 80 WAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 132
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E++ GK WA + +
Sbjct: 97 LQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFR 156
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 157 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 196
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 50/86 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++++ V+ + ++ + +L+++ + + A A ++ER L+ +L G + ++I
Sbjct: 81 EVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRVAKRKMI 140
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RSNLRLVVSIAKRYINRGVPFLDLIQ 166
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L+ + + + WA A + +
Sbjct: 79 LQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQFR 138
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 139 HRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 178
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + WA A ++ +
Sbjct: 87 LQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEFR 146
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 147 RRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++K +Q + LE+ + TL+K+ + S WA+AA +SE+ L ++ G + +++
Sbjct: 29 EIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEKAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ LV+ +A+ Y + DL+Q
Sbjct: 89 EANLRLVVSIAKKYLKHNLDLLDLIQ 114
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L +K LEK + +L WAQ A + +K+ + G ++++I++
Sbjct: 47 KQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKRAKQKMIEANLR 106
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 107 LVVAIAKKYQKRNMEFLDLIQ 127
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A+ E + V+ + E + L E G++ S+ WA A S R+ ++ +
Sbjct: 4 LLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWA--AACSPRLFREMMLTAKE 61
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALA 334
++ +++ LV+ +AR Y G+G+ DL+Q LA
Sbjct: 62 AKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLA 100
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V++ A+ E + L ++ G + A+A + + L + L G + +I
Sbjct: 84 EVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRVAKRRMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L +E G++ S WA ++ R L L G + ++
Sbjct: 80 EIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGRVAKRKM 139
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 140 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 166
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + L+++SG S A ++ER L+ L G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 180
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ V+ + + I+ L+++ G+ + A ++E+ L+ L G +
Sbjct: 82 ADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRVAKR 141
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 142 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E ++++ V+ + + E + L + + S A A G+ +ER L L G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER+ L ++ + + WA+A + + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ +K +Q + LE+ K TL K+ +L WA+AA +SE+ L+ +
Sbjct: 20 RIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQ 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQ 114
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E+++ VQ + +E K L++E + S A+A G + + + L G +
Sbjct: 78 AEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGRIAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHALA 334
WA+ G+S R L+ L G +E++I++ LV+ +++ Y+G G+ F DL VS L
Sbjct: 58 WAKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDL--VSEGNLG 115
Query: 335 FIDSCCALHY 344
I + Y
Sbjct: 116 LIRAVEKFEY 125
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++G+ WA + +
Sbjct: 167 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 226
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 227 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 266
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + WA+ A +S + L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRKELQSIIEI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E ++ V+ +++ E + L ++ + S A+A G+ SER L L G +
Sbjct: 67 AEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAK 126
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 127 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q
Sbjct: 161 LRRLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQ 202
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE + G S A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|168029696|ref|XP_001767361.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens]
gi|162681425|gb|EDQ67852.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
Length = 632
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R L A E ++ ++ + LE+++ L K+ G+ + WA AAGV ++++ LA G
Sbjct: 332 RGLLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMRRRLALG 391
Query: 294 WYCREELIKSTRPLVLFLARNYR--GLGIPFSDLLQ 327
R +LI+ LVL A Y + + DL Q
Sbjct: 392 RAARTKLIQRNLRLVLSQAYKYHKDSMSLSIQDLCQ 427
>gi|374854339|dbj|BAL57223.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
gi|374855178|dbj|BAL58041.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
Length = 405
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q
Sbjct: 157 LRKLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQ 198
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LE+ + L +E + + WA + + +
Sbjct: 72 LQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAFR 131
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 132 RRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L + + WA+A + +
Sbjct: 68 LQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDMPLPKFQ 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 128 RRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + WA A +S +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 143 HRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ L +KT +++ G+ S WA AA + L Q L G + ++
Sbjct: 37 QEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQAKRQM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 97 IEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 235 RLTIARNEAEMSKGVQV---VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ G QV +A LE K TLEK+ + + WA+A G S LK +
Sbjct: 36 RVPLLTHEQEIVFGKQVQQMMAFLE-AKETLEKKLKREPTEEEWAEAVGHSVGDLKNLVK 94
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 95 IGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 130
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 50 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 110 LVVSIAKKYQKRNMEFLDLIQ 130
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L ++ G+ + + WA+AAG+S LK+ L G +E
Sbjct: 26 QQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGRRAKE 85
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y + DL+Q
Sbjct: 86 RMVAANLRLVVSVAKKYTKRNMELLDLIQ 114
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 48 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQ 128
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ ++ + + ++ L E G+ + A A G+SE L G ++
Sbjct: 36 ANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGIIAKQ 95
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I S LV+ +A+ Y G+PF DL+Q
Sbjct: 96 KMISSNLRLVVSIAKRYLNRGVPFLDLIQ 124
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G WA + +
Sbjct: 166 LQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFR 225
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 226 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 265
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+++ + + + +++ G A+ G+ ++ L+ L G + ++I
Sbjct: 86 EVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQLEHRLYQGKVAKRKMI 145
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 146 RSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|320159820|ref|YP_004173044.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319993673|dbj|BAJ62444.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 396
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER---VLKQHLAFGWYCREEL 300
EMS+ V ++++ E ++ E G+AA +A +S + L+ + G RE L
Sbjct: 105 EMSR-VPLLSSEEEVELAKRIERGRAAKKELTRNSARLSPQRRGELEAQIQDGESAREHL 163
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
IK+ LV+ +A+ Y G G+PF DL+Q
Sbjct: 164 IKANTRLVVSIAKRYIGRGVPFLDLIQ 190
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 160 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDMPLIKFR 219
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 220 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 259
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E E+ +Q + + L G+A + + WA++ ++ L++ L G ++ +
Sbjct: 27 EEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGGAAKKTM 86
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+++ +V+ +AR Y+ LG+P +DL+Q
Sbjct: 87 VEANMRMVISIARKYQHLGVPLTDLIQ 113
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L + + WA+A + +
Sbjct: 82 LQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVELPINSFR 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 142 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 181
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ +K +Q V +L IK +L E + G+ S + WA+AA +S R L++ +
Sbjct: 19 RVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIK 78
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 79 EGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 92 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFR 151
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 152 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 191
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 93 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFR 152
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 153 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 192
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG-VSERVLKQHLA 291
R+ + +E E+ K VQ L+ +K +L K+ G+ SL+ WA+A+G + L Q +A
Sbjct: 24 RVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIA 83
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 84 DGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQ 119
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
+++ ++R+ T LE+ S+ W+Q G+ L+Q L G ++ +++ LV
Sbjct: 30 LRLAHQVQRMVTLLEQRQ-PHESVEGWSQRLGIPLAELQQILRQGEAAKKRMVECNLRLV 88
Query: 309 LFLARNYRGLGIPFSDLLQ 327
+ +A+ YR G+PF DL+Q
Sbjct: 89 VSIAKRYRNRGLPFLDLIQ 107
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQ 123
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G + +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 175 WAHLAGLEVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L + L WA + + L G
Sbjct: 74 RLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGR 133
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 134 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 166
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ +A++E + + +E + + A A SE + L +
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ ++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 184
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L + + + WA + + L
Sbjct: 90 GRIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLH 149
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L+++ G++ + WA G+ + + L L G + ++
Sbjct: 72 EIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGRVAKRKM 131
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 132 IRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG---VSERVLKQHLAFGWYCRE 298
E E+++ V+ + + ++ L+ + G+ + AQ AG ++E+ L+ L G +
Sbjct: 98 EVELARRVRFLEEVRDLQADLQLQIGQHPTK---AQVAGQLEITEKQLENRLYQGRVAKR 154
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 155 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 183
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 154 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFR 213
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 214 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 253
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 197
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 198 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 230
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RL R+EA ++G +Q + + TL G SL WA+AAGV LK LA
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 293 G---W-------------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G W +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 252 VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFL 311
+ LE ++ L ++ G+ N WA A +S L+ L G + ++ + LV+
Sbjct: 371 LTRLEAVREDLRRKMGRLPRENEWAWEANLSVSELRGKLIKGRRAKNRMVAANLRLVICF 430
Query: 312 ARNYRGLGIPFSDLLQ 327
A+ YR G+ F DL+Q
Sbjct: 431 AKRYRNRGVAFQDLVQ 446
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGW 294
L A E +SK VQ + +E +T + G+ + WA G S ++ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
R ++KS LV +AR Y G+ F DLL
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLL 100
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|302793696|ref|XP_002978613.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
gi|300153962|gb|EFJ20599.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
Length = 458
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
R ++ E E+ + + V +L ++++ L + + S + WA AA R L++ L G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATAANTDFRTLRRRLQLGE 217
Query: 295 YCREELIKSTRPLVLFLARNY 315
+ +LI+ LVLFLAR Y
Sbjct: 218 AAQNKLIEHNCRLVLFLARRY 238
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I++ LV+ +A+ Y + DL+Q
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 68 KQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKRAKQKMIEANLR 127
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 128 LVVAIAKKYQKRNMEFLDLIQ 148
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I++ LV+ +A+ Y + DL+Q
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A+A +S L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ G + +LI + LV+ +A+ Y G+PF DL+Q
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 35 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 94
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I++ LV+ +A+ Y + DL+Q
Sbjct: 95 MIEANLRLVVSVAKKYLKRNMDLLDLIQ 122
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++ L+ I+ L + + + WA+AAGVSE L+Q +
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|449514325|ref|XP_002187580.2| PREDICTED: serine/threonine-protein kinase PLK2 [Taeniopygia
guttata]
Length = 773
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 212 ALQEGLKQ--PTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
A QE +Q P +FS RAL RGR +AE S G A L R + TL K G+A
Sbjct: 92 ARQERAEQVSPVLFSRPRALPGRGRAGPGRAGKAERSPGEDRPAALGRSRHTLHK--GRA 149
Query: 270 -ASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
A L W++AA R++ YCR +++
Sbjct: 150 GAPLGVWSRAA----RIITDPTTGKRYCRGKVL 178
>gi|242089063|ref|XP_002440364.1| hypothetical protein SORBIDRAFT_09g030370 [Sorghum bicolor]
gi|241945649|gb|EES18794.1| hypothetical protein SORBIDRAFT_09g030370 [Sorghum bicolor]
Length = 121
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR 148
+RLLM+NL L+++ A D LE +IL + +LGAL+ F + L+R
Sbjct: 20 YRLLMQNLQELDTSLAGKDLKMLENDILVHIEQLGALRSFTASLTR 65
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWA-------QAAG 280
L GR + R+E +++ VQ L ++ L+KE G+ +L WA + A
Sbjct: 50 LQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWAN 109
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 110 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 156
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ ++ L +K TL ++ G + W+QAAG+S L+Q + G + ++
Sbjct: 28 QEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGETAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+++ LV+ +A+ Y + DL+Q
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ +L+ G+ A+ ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFIEEVRELQASLQATKGQVAA------ELDMTEKQLESRLYQGRVAKRKMI 138
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 139 RSNLRLVVSIAKRYLNRGVPFLDLIQ 164
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE + GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 92 TEAETNGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAE 151
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 152 LANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 201
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
AA WA+ AG+S + L+Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 151 AAGKQRWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQ 123
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 90 TEAETKGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAE 149
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 150 LANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ++ +L K L + + +L WAQAA + LK+ + G ++++
Sbjct: 37 QEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAELKKLIHQGKRAKQKM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 97 IEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L +SG+ S+ WA+AA ++ L + +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 199 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFR 258
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 259 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 298
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ IK +L + + +L WA +AG+ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIAL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
+ + ++R+ LE+ + SL W++ G+ L+Q L G ++ +++ LV
Sbjct: 30 LHLAHQVQRMMALLEQRR-QHESLEDWSRRLGIPLEELQQILRQGEAAKKRMVECNLRLV 88
Query: 309 LFLARNYRGLGIPFSDLLQ 327
+ +A+ YR G+PF DL+Q
Sbjct: 89 VSIAKRYRNRGLPFLDLIQ 107
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE + GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 68 TEAETNGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAE 127
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 128 LANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 177
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 190 KLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGV 249
+L+T S+E+++TS + E LQ ++ I + +R + G R ++ R AE
Sbjct: 95 ELRTTATSQENLDTSQV----ECLQLYIR--LIEAHDRLASQLGHRPSLERWAAEAH--- 145
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
L +K TL A WA+ AG++ L+Q G +E +IK+ LV+
Sbjct: 146 ---IALSELKPTL------VAGKRSWAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVV 196
Query: 310 FLARNYRGLGIPFSDLLQ 327
+A+ Y+ G+ DL+Q
Sbjct: 197 SVAKKYQNRGLELLDLIQ 214
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+ K LE+++ S WA+AA V+ L++ +
Sbjct: 20 RVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++I++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 175 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------WA 276
L GR RL A E E+++ + + LERI+ + ++ L+C WA
Sbjct: 73 LQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ------LDCDPDDLERHPEPWA 126
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 127 SEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L K L E G+ + WA+AAG+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHA 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + ++++ LV+ +A+ Y + DL+Q
Sbjct: 81 GERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 175 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQ 128
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ G QV + I K L K+ + SL WA SE +KQ +
Sbjct: 29 RVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 31 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +E ++ + LV+ +A+ Y + DL+Q
Sbjct: 91 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 15 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 74
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G +E ++ + LV+ +A+ Y + DL+Q
Sbjct: 75 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 110
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR- 297
A E E+++ ++++ + E ++ L ++ + SL W QA + ++Q + + R
Sbjct: 74 AAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQ--VRQFEIWLYQLRA 131
Query: 298 --EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 132 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 163
>gi|168703618|ref|ZP_02735895.1| transcription initiation factor sigma 70 [Gemmata obscuriglobus UQM
2246]
Length = 521
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 284 RVL-KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQVSRHAL 333
RVL K+ LA+ R+EL ++ LV+ +A+NYR G+PFSDL+Q L
Sbjct: 268 RVLRKRRLAY-QAVRKELAEANLRLVVSIAKNYRNRGLPFSDLIQEGNRGL 317
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ G QV + I K L K+ + SL WA SE +KQ +
Sbjct: 29 RVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 154 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 154 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|302774234|ref|XP_002970534.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
gi|300162050|gb|EFJ28664.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
Length = 458
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
R ++ E E+ + + V +L ++++ L + + S + WA A R L++ L G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATTANTDFRTLRRRLQLGE 217
Query: 295 YCREELIKSTRPLVLFLARNY 315
+ +LI+ LVLFLAR Y
Sbjct: 218 AAQNKLIEHNCRLVLFLARRY 238
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 157 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFR 216
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 217 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 256
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 246 SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
K VQ + L K L K+ + SL WA E +KQ +A G ++++I++
Sbjct: 42 GKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETEVKQTVAQGKRAKQKMIEANL 101
Query: 306 PLVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 102 RLVVAIAKKYQKRNMEFLDLIQ 123
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 140 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFR 199
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G +E++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 200 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 239
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +K VQ L +IK +L+++ G+ + + WA+ A +S + LK L G + +++
Sbjct: 29 EIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEAAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ LV+ +A+ Y + DL+Q
Sbjct: 89 EANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
GV V+ L+RI GK WA+ AGV+ L Q + G ++ +I++ L
Sbjct: 183 GVAEVSELKRIMA-----EGK----RRWAELAGVTLEALDQMITEGIQAKDHMIQANLRL 233
Query: 308 VLFLARNYRGLGIPFSDLLQ 327
V+ +A+ Y+ G+ DL+Q
Sbjct: 234 VVSVAKKYQNRGLELLDLIQ 253
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 154 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|407327705|dbj|BAM45410.1| sigma factor 5 [Marchantia polymorpha]
Length = 635
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 230 NSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289
+S R L A E ++ ++ LE+ + +E G+ S WA+AA + LK+
Sbjct: 329 DSLSRDLLSAEEEYSLASLMKPAKKLEKTFKAIGEELGRDPSDEEWAKAAQLDVHTLKRQ 388
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYR 316
+ G R +LI+ LVLF A Y+
Sbjct: 389 VLLGRAARNKLIQHNLRLVLFQAHKYQ 415
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREEL 300
E ++ +Q++ ER + + + G+ +L WA+A G S+ V + + ++++
Sbjct: 224 EVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRESKDKI 283
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I S LV ++AR Y G+ DL+Q
Sbjct: 284 IHSNLRLVYYIARFYSKYGLSLQDLMQ 310
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ V+ + + ++ L + G+ + A ++E+ L+ L G +
Sbjct: 83 ADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRVAKR 142
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 143 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQ 123
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE + L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y + DL+Q
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ L+ + G + A ++E+ L+ L G + ++I
Sbjct: 86 EVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMI 145
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQ 327
+S LV+ +A+ Y G+PF DL+Q
Sbjct: 146 RSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|161899381|ref|XP_001712917.1| sigma 2 transcription factor [Bigelowiella natans]
gi|75756411|gb|ABA27305.1| sigma 2 transcription factor [Bigelowiella natans]
Length = 389
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 218 KQPTIFSAERALNSRGRRL------TIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
KQ FS LN + L + NE+ + + V+ + E + LE + G +
Sbjct: 66 KQIVDFSYIDELNKKKINLKHKNKNNTSTNESIIMEWVKDLLRWEDLFLKLENKLGFYPT 125
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
++ + + +K+ LA G +E LIK + L++ +A+ Y G G+ F DL+
Sbjct: 126 IDFFTKGIIDLTSEIKERLAIGKISKEILIKRSLKLIISIAKRYNGCGLSFEDLI 180
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 206 LSLPSEALQE--GLKQPTIFSAERALNSR--GRRLTIARN---------------EAEMS 246
+S+P+ A++ G QP +A+ SR G + + R+ E +
Sbjct: 10 VSVPTVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRSYLRDIGRVPLLSHQQEITLG 69
Query: 247 KGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
+ VQ + +LE + L EK G+A A+AAG+S LK+ L G +E ++ +
Sbjct: 70 RQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANL 129
Query: 306 PLVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y + DL+Q
Sbjct: 130 RLVVSVAKKYTKRNMELLDLIQ 151
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + +L ++ L KE + W+ AG+SE +
Sbjct: 91 LHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMT 150
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ + G ++++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 151 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 190
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 242 EAEMSKGVQVVANLE----RIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR 297
E E+++ V+++ +E + TL++ A A A G +E L+Q L +
Sbjct: 175 EIELARQVRIIVEIEDYSEKASETLKRRPTHAE----LATAFGYTEGQLRQKLRQARAAK 230
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I+S LV+ +A+ Y G+PF DL+Q
Sbjct: 231 RRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 260
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 37/58 (63%)
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + WA+A +SE+ L++ +A G + ++I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 66 STFSEWAEAIKLSEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L+++ G A L A+AAG+S LK+ L G +E
Sbjct: 63 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 122
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y + DL+Q
Sbjct: 123 RMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQ 128
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ + LV+ +A+ Y + DL+Q
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCR 297
A +E E++K ++ LE++K ++ ++G + WA+AA +S+ L+ + G R
Sbjct: 129 AEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGTLAR 188
Query: 298 EELIKSTRPLVLFLARNY---RGLGIPFSDLLQ 327
+ L+++ V+ +A+ Y RG + DL+Q
Sbjct: 189 DRLVRANLRWVVAVAKKYHKQRGT-MSMQDLIQ 220
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +E+IK +L+ + G+ + + WA AA ++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G + +++++ LV+ +A+ Y + DL+Q
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE 263
+P+ L + +P IFSA+ L+ GR L E + K VQ + L K LE
Sbjct: 1 MPTAKLDQNNDKP-IFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELE 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+E G+ A+ W Q AG+S+ L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 EELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQ 327
DL+Q
Sbjct: 120 DLIQ 123
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG------- 280
L GR + R+E +++ VQ L ++ L+KE G+ +L W A
Sbjct: 52 LQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQ 111
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 112 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 158
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER + L + + + WA + + L
Sbjct: 91 GRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTFRYRLH 150
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 151 VGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQ 327
LV+ +A+ Y+ + F DL+Q
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQ 123
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
+E + T++ ++ G+ + WA+A + + L++ L CR ++ S LV+ +AR
Sbjct: 6 MEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVIKVARK 65
Query: 315 YRGLGIPFSDLLQ 327
+ G DL+Q
Sbjct: 66 FGLKGTTIEDLIQ 78
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E ++ VQ++ NL K L + +L WA + VL+ L+ G ++++
Sbjct: 49 QEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKM 108
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQ 327
I++ LV+ +A+ Y+ + F DL+Q
Sbjct: 109 IQANLRLVVAVAKKYQHRNLEFMDLIQ 135
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 247 KGVQVVA---NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W------ 294
+G ++VA NL +++ L E G SL WA AG+ LK LA G W
Sbjct: 129 EGDEIVAPFLNLVQVQERLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWAEIAQL 188
Query: 295 -------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 189 TVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 234
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,564,894,506
Number of Sequences: 23463169
Number of extensions: 165709081
Number of successful extensions: 500974
Number of sequences better than 100.0: 467
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 500521
Number of HSP's gapped (non-prelim): 511
length of query: 344
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 201
effective length of database: 9,003,962,200
effective search space: 1809796402200
effective search space used: 1809796402200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)