BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019234
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2
SV=2
Length = 410
Score = 598 bits (1543), Expect = e-170, Method: Compositional matrix adjust.
Identities = 276/344 (80%), Positives = 312/344 (90%), Gaps = 5/344 (1%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
++PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct: 71 EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct: 131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190
Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
RVSIYD S+DKKVGVG L D+A P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct: 191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250
Query: 182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
QDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+K
Sbjct: 251 QDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVK 310
Query: 242 KFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDC 300
KF++HTNYPGHADFNSYIKCNF+I G+D +AE + NKITP+T W+QVKEILG+C
Sbjct: 311 KFVLHTNYPGHADFNSYIKCNFVISAGAD----AAEANRSGNKITPSTNWDQVKEILGEC 366
Query: 301 GRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
G AAIQTQGSTSNPFGST+VYGYQN+AFEVMKNG+I+T+T+FQS
Sbjct: 367 GPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS 410
>sp|Q9VSH9|U183_DROME UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2
SV=1
Length = 438
Score = 217 bits (553), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 198/380 (52%), Gaps = 54/380 (14%)
Query: 4 PLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYA 63
PL +DIII+ P G L FDP SQRL+ IE+F++K +++RY L + +
Sbjct: 51 PLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEH 110
Query: 64 LFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPV 119
FG T PGVYD + ++ L + GLSF FP+ ++ YA L F +G +PV
Sbjct: 111 SFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPV 164
Query: 120 TCRVSIYDGSADKKVGVGSLFDKAIAPSLPVG----SLYIEEV--------HAKLGEELH 167
++S+Y GS ++ + + PSLP+ +Y+E H K +
Sbjct: 165 VSKMSLYAGS--------NVLENRV-PSLPLSCYHRQMYLESATVLRTAFGHTKGLKLKL 215
Query: 168 FTVGS------------QHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRST 215
FT GS + + FG S +DV T LG P I K D+M IHS+S R +
Sbjct: 216 FTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGAPNRIFFKSEDKMKIHSSSVNRQAQS 275
Query: 216 LCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNF-IILGSDFAGTS 274
D F+NY+T G+D+LFD +T KKFI+HTNYPGH +FN Y +C F +L +D S
Sbjct: 276 KRSDIFFNYFTLGIDVLFDARTQTCKKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMS 335
Query: 275 AEVHSYKN-------KITPNTKWEQVKEILGDCGRAAIQTQGS---TSNPFGSTFVYGYQ 324
H IT TKW+ + L R + + S T+NPFGSTF YGYQ
Sbjct: 336 DSGHDLVTPTKQEHVNITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQ 395
Query: 325 NIAFEVMKNGYISTVTMFQS 344
++ FEVM N +I++VT++ +
Sbjct: 396 DLIFEVMPNSHIASVTLYNT 415
>sp|O08654|CP070_RAT UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 422
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 194/385 (50%), Gaps = 70/385 (18%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
Q PL D+I++ G L FD ++QRL++IE++D+ +++++Y + T +
Sbjct: 49 QSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQI 108
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELP------------ 109
FG T PGVY+ ++ L + GLSF+F + D E P
Sbjct: 109 DQSFGATHPGVYNSAEQLFHLNFRGLSFSFQL---------DSWTEAPKYEPNFAHGLAS 159
Query: 110 LEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVH------ 159
L+ P G T R+ IY G+ SL D AP +P+ G++Y E V
Sbjct: 160 LQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESVDVIRDGT 208
Query: 160 -----------AKLG----EELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVI 204
A G + V + + FG S QDV + LG P + K D+M I
Sbjct: 209 GPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKI 268
Query: 205 HSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFI 264
HS S + + C DYF+NY+T G+DILFD THK+KKF++HTNYPGH +FN Y +C F
Sbjct: 269 HSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFK 328
Query: 265 I---LGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTS----NPFGS 317
I + + AG E+ T +KW+ ++E+LG + S+S NPFGS
Sbjct: 329 IPLAIKKENAGGQTEI------CTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPFGS 382
Query: 318 TFVYGYQNIAFEVMKNGYISTVTMF 342
TF +G Q + FEVM+N +I++VT++
Sbjct: 383 TFCFGLQRMIFEVMQNNHIASVTLY 407
>sp|Q9BSU1|CP070_HUMAN UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1
Length = 422
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 187/382 (48%), Gaps = 64/382 (16%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
Q PL D+I++ G L FD ++QRL++IE+ D+ +++++Y + T +
Sbjct: 49 QSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQI 108
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELP------------ 109
FG T PGVY+ ++ L + GLSF+F + D E P
Sbjct: 109 DQSFGATHPGVYNSAEQLFHLNFRGLSFSFQL---------DSWTEAPKYEPNFAHGLAS 159
Query: 110 LEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHA----- 160
L+ P G T R+ IY G+ SL D AP +P+ G++Y E V
Sbjct: 160 LQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESVDVLRDGT 208
Query: 161 ----------------KLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVI 204
L + V + + FG S QDV + LG P + K D+M I
Sbjct: 209 GPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKI 268
Query: 205 HSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFI 264
HS S + + C DYF+NY+T G+DILFD THK+KKF++HTNYPGH +FN Y +C F
Sbjct: 269 HSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFK 328
Query: 265 ILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTS----NPFGSTFV 320
I A T +KW+ ++E+LG + S+S NPFGSTF
Sbjct: 329 I---PLAIKKENADGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFC 385
Query: 321 YGYQNIAFEVMKNGYISTVTMF 342
+G Q + FEVM+N +I++VT++
Sbjct: 386 FGLQRMIFEVMQNNHIASVTLY 407
>sp|Q922R1|CP070_MOUSE UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=2
Length = 422
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 191/376 (50%), Gaps = 52/376 (13%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
Q PL D+I++ G L FD ++QRL++IE+ ++ +++++Y + T +
Sbjct: 49 QSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQI 108
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELP------------ 109
FG T PGVY+ ++ L + GLSF+F + D E P
Sbjct: 109 DQSFGATHPGVYNSTEQLFHLNFRGLSFSFQL---------DSWTEAPKYEPNFAHGLAS 159
Query: 110 LEFPDGTTPVTCRVSIYDGSA--DKKVGVGSL---FDKAIAPSLPV-------GSLYIEE 157
L+ P G T R+ IY G++ D K V L A S+ V L +
Sbjct: 160 LQIPHGAT--VKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRL 217
Query: 158 VHAKLG----EELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPR 213
+ A G + V + + FG S QDV + LG P + K D+M IHS S +
Sbjct: 218 LAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQV 277
Query: 214 STLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII---LGSDF 270
+ C DYF+NY+T G+DILFD THK+KKF++HTNYPGH +FN Y +C F I + +
Sbjct: 278 PSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKEN 337
Query: 271 AGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTS----NPFGSTFVYGYQNI 326
AG E+ T +KW+ ++E+LG + S+S NPFGSTF +G Q +
Sbjct: 338 AGGQTEI------CTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRM 391
Query: 327 AFEVMKNGYISTVTMF 342
FEVM+N +I++VT++
Sbjct: 392 IFEVMQNNHIASVTLY 407
>sp|P34692|U183_CAEEL UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1
SV=3
Length = 422
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 177/365 (48%), Gaps = 39/365 (10%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
++P DIII G L FD SQ ++LIE+ ++ + + Y ++ + +AT V
Sbjct: 67 KDPFYQDIIIYIGSTGIRLYFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRV 126
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREA----ELPLEFPDGTT 117
FG T PG YD + ++Y+ +PGLSF FP + ++ + R L++ +
Sbjct: 127 NEFFGSTHPGSYDDKHNIYVQSWPGLSFCFPYGGENSNL-EVRPGFGGNLRSLKYDANSQ 185
Query: 118 PVTCRVSIYDG-SADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHF-------- 168
P ++SIY G + + V + F + I E +G ++ F
Sbjct: 186 PKLTKMSIYRGPNPSEPESVDTPFSCYCGQNRTRKVEAIWENGNIVGIDIQFDTQNGRIV 245
Query: 169 ------TVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCG--DY 220
+ ++ I FG S DV + LG P + K D+M IH + TL G ++
Sbjct: 246 DGEYDVSTYTRQIYFGDSVSDVQSILGAPTKVFYKSDDKMKIHRGLH---KETLYGPPNF 302
Query: 221 FYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSY 280
F+NY+ GLDILFD + ++ KF++HTN PGH DF Y +CNF I +D
Sbjct: 303 FFNYFVMGLDILFDFVSKRVVKFVLHTNAPGHCDFGMYSRCNFSIFLND----------K 352
Query: 281 KNKITPNTKWEQVKE-ILGDCG--RAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYIS 337
+ +I ++K+++ + D R + + PFGSTF YG + I E +NG+++
Sbjct: 353 QYEIRTDSKFDEFSHAFMNDSNPPRPVVLAR-QEQQPFGSTFCYGIKQIIVERTENGFLT 411
Query: 338 TVTMF 342
+VT++
Sbjct: 412 SVTIY 416
>sp|P15238|RPC_BP163 Repressor protein C OS=Rhizobium phage 16-3 GN=C PE=1 SV=4
Length = 263
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 184 VWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFY 222
VW EL R GI ++++ QM+ + DP ++L G Y
Sbjct: 53 VWRELARELGIDEQEMRQMMTEAGRDPEKVTSLAGLRKY 91
>sp|Q9D2X5|SCC4_MOUSE MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=2
SV=3
Length = 619
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 224 YYTRGLDILFDGQTHKIKKFIMHTNYPGHA-DFNSYIKCNFIILGSDF 270
+Y RGL F G+ ++ K+F+ T +A D N C+ ++LG F
Sbjct: 468 FYVRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIF 515
>sp|Q9Y6X3|SCC4_HUMAN MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1
SV=2
Length = 613
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 224 YYTRGLDILFDGQTHKIKKFIMHTNYPGHA-DFNSYIKCNFIILGSDF 270
+Y RGL F G+ ++ K+F+ T +A D N C+ ++LG F
Sbjct: 462 FYVRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIF 509
>sp|B4ZIX8|SCC4_XENLA MAU2 chromatid cohesion factor homolog OS=Xenopus laevis GN=mau2
PE=1 SV=1
Length = 607
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 224 YYTRGLDILFDGQTHKIKKFIMHTNYPGHA-DFNSYIKCNFIILGSDF 270
+Y RGL F G+ ++ K+F+ T +A D N C+ ++LG F
Sbjct: 456 FYIRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIF 503
>sp|B1H1Z8|SCC4_XENTR MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis
GN=mau2 PE=2 SV=1
Length = 604
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 224 YYTRGLDILFDGQTHKIKKFIMHTNYPGHA-DFNSYIKCNFIILGSDF 270
+Y RGL F G+ ++ K+F+ T +A D N C+ ++LG F
Sbjct: 453 FYIRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIF 500
>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a
PE=2 SV=1
Length = 2437
Score = 32.0 bits (71), Expect = 6.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 94 PAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDK 142
P + CQDRE P GTT V C ++I D K G DK
Sbjct: 609 PCRNGGTCQDRENAYICTCPKGTTGVNCEINI-DDCKRKPCDYGKCIDK 656
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,699,776
Number of Sequences: 539616
Number of extensions: 6309036
Number of successful extensions: 12036
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12009
Number of HSP's gapped (non-prelim): 16
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)