Query 019236
Match_columns 344
No_of_seqs 201 out of 555
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 2E-69 4.4E-74 490.0 0.4 215 48-336 1-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.4 0.00028 6.1E-09 54.3 5.4 68 226-320 3-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.2 0.0017 3.6E-08 50.1 7.3 65 227-319 4-69 (81)
4 cd05992 PB1 The PB1 domain is 96.9 0.0048 1E-07 47.2 7.5 66 226-319 2-69 (81)
5 cd06398 PB1_Joka2 The PB1 doma 96.9 0.0028 6.1E-08 52.1 6.3 68 226-320 2-72 (91)
6 cd06407 PB1_NLP A PB1 domain i 96.8 0.0045 9.8E-08 49.9 6.6 55 226-307 2-56 (82)
7 cd06396 PB1_NBR1 The PB1 domai 96.2 0.014 3E-07 47.7 6.0 53 227-307 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 95.9 0.041 8.9E-07 45.1 7.6 74 226-324 2-79 (81)
9 cd06402 PB1_p62 The PB1 domain 95.2 0.092 2E-06 43.3 7.2 59 225-308 1-64 (87)
10 cd06403 PB1_Par6 The PB1 domai 95.1 0.048 1E-06 44.7 5.3 68 227-320 3-71 (80)
11 cd06409 PB1_MUG70 The MUG70 pr 94.7 0.069 1.5E-06 44.0 5.3 51 234-307 7-59 (86)
12 cd06404 PB1_aPKC PB1 domain is 94.5 0.091 2E-06 43.3 5.6 55 227-308 3-57 (83)
13 cd06397 PB1_UP1 Uncharacterize 94.1 0.16 3.5E-06 41.8 6.2 66 227-320 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 90.0 1 2.3E-05 37.2 6.2 65 225-319 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 56.2 19 0.00041 30.5 4.1 37 240-304 22-58 (92)
16 PF10411 DsbC_N: Disulfide bon 45.7 17 0.00036 27.3 2.1 17 293-309 34-50 (57)
17 cd06406 PB1_P67 A PB1 domain i 44.6 1E+02 0.0022 25.4 6.6 66 225-319 3-69 (80)
18 cd06395 PB1_Map2k5 PB1 domain 40.2 50 0.0011 27.8 4.2 49 232-307 9-57 (91)
19 PF11576 DUF3236: Protein of u 39.2 11 0.00023 34.5 0.2 17 48-64 93-109 (154)
20 PF09840 DUF2067: Uncharacteri 31.9 21 0.00046 33.2 0.9 38 281-322 89-126 (190)
21 KOG3606 Cell polarity protein 26.8 87 0.0019 31.7 4.2 79 224-330 18-102 (358)
22 COG3286 Uncharacterized protei 26.3 31 0.00067 32.9 1.0 39 280-322 91-129 (204)
23 KOG3938 RGS-GAIP interacting p 25.8 1E+02 0.0022 31.2 4.4 74 232-333 62-142 (334)
24 PF09582 AnfO_nitrog: Iron onl 24.9 79 0.0017 29.7 3.4 48 289-339 18-83 (202)
25 TIGR02577 cas_TM1794_Crm2 CRIS 22.4 56 0.0012 34.2 2.0 77 222-322 340-434 (482)
26 COG4019 Uncharacterized protei 21.9 41 0.00089 30.5 0.8 16 49-64 95-110 (156)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=2e-69 Score=489.99 Aligned_cols=215 Identities=60% Similarity=0.980 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCccccCCCcccchhhccccCCCCccccCC
Q 019236 48 LNFKETELRLGLPGSQSPGRKPSHGLSLFGKDIENNNSNSNNTNGYAAPSPLKSLVSGAKRGFSDALDGASRNWGLSING 127 (344)
Q Consensus 48 lnlk~TELRLGLPGs~sp~r~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~sg~KRgFsd~~~~~s~k~~~~~~~ 127 (344)
||||+|||||||||+++|+.... ..++...+++||||+++|+..+ .+.
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~--------------------------~~~~~~~~~~kR~F~~aid~~~------~~~ 48 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSS--------------------------SSSKKSSSGNKRGFSEAIDSSS------SNS 48 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccc--------------------------cccccccCcccccchhhhhhcc------ccc
Confidence 79999999999999999883211 2334567899999999998653 000
Q ss_pred CCCcccCCCccccCCCCCCCccccccccccccCCCCCcccccccCCCccCCCCCCCCccccCccccCCCcchhccccccc
Q 019236 128 KPDAELGKGAVLYSPRGGLDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMAS 207 (344)
Q Consensus 128 ~s~~~~~~~~~~~s~~~~~~~~~~~~~~k~~~~~s~~~~~e~~~~~~~~~~~~~~~~pa~kaqVVGWPPVrS~RKN~l~~ 207 (344)
.+. .+... .. . ......... .....++...+|++++|+|||||||+||||++..
T Consensus 49 ~~~----------~~~~~-~~---~----------~~~~~~~~~--~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~ 102 (215)
T PF02309_consen 49 QSS----------SSSSS-DS---S----------SSSSSSSTS--SSSSDSSSSSPPASKAQVVGWPPVRSFRKNSLSE 102 (215)
T ss_dssp ---------------------------------------------------------------BTTBS----S-------
T ss_pred ccc----------ccccc-cc---C----------ccccccccc--ccccccccCCCCcccccccCCCcccccccccccc
Confidence 000 00000 00 0 000000000 0001111135577899999999999999998772
Q ss_pred ccccCcccccCCCCCCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhccc
Q 019236 208 NLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL 287 (344)
Q Consensus 208 ~~~k~~~~~~~k~g~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll 287 (344)
. ..+..++||||+|||+||||||||++|+||++|+.+|++||.+|.|++|++++ +++..+.+++
T Consensus 103 ~----------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~~~ 166 (215)
T PF02309_consen 103 K----------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLDLL 166 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c----------ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcccc
Confidence 2 11234799999999999999999999999999999999999999999998743 4556677788
Q ss_pred CCCceEEEEEcCCCCeEEcCCcChHHHHhhceeeEEecCccccCCchhh
Q 019236 288 HGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 336 (344)
Q Consensus 288 ~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~ 336 (344)
++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+|||
T Consensus 167 ~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 167 NGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp -------------------------------------------------
T ss_pred CCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 8899999999999999999999999999999999999999999999996
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.44 E-value=0.00028 Score=54.33 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=55.0
Q ss_pred eeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE
Q 019236 226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML 305 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 305 (344)
-|||...|. +=|.+.+..--+|++|...+++.|... ...+.|.|.|.||||..
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence 489999987 333588888889999999999999640 24789999999999998
Q ss_pred cCC-cChHHHHhhcee
Q 019236 306 VGD-VPWDMFTETCRR 320 (344)
Q Consensus 306 VGD-VPWemFv~svKR 320 (344)
+-+ .=|.+.+..+++
T Consensus 56 i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 56 ISSDEDLQEAIEQAKE 71 (84)
T ss_dssp ESSHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHh
Confidence 875 568888887753
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.20 E-value=0.0017 Score=50.09 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=51.9
Q ss_pred eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
|||.-.|. -|.+-+..--+|++|...+.+.|.. ....+.|.|+|.||||..+
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~l 55 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVSL 55 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEEe
Confidence 78877554 6778888889999999999999963 1136899999999999877
Q ss_pred CC-cChHHHHhhce
Q 019236 307 GD-VPWDMFTETCR 319 (344)
Q Consensus 307 GD-VPWemFv~svK 319 (344)
.+ .=|.+.+..++
T Consensus 56 ~sd~Dl~~a~~~~~ 69 (81)
T smart00666 56 TSDEDLEEAIEEYD 69 (81)
T ss_pred cCHHHHHHHHHHHH
Confidence 65 57777777666
No 4
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.92 E-value=0.0048 Score=47.16 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=52.1
Q ss_pred eeEEEeeCCCccceeecC-CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 226 YVKVSMDGAPYLRKVDLK-IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs-~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
-|||+-.|. -|.+=+. ..-+|++|...|.+.|... ...+.+.|.|.||||.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v 53 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV 53 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence 378888876 4555555 8899999999999999740 0367999999999999
Q ss_pred EcCC-cChHHHHhhce
Q 019236 305 LVGD-VPWDMFTETCR 319 (344)
Q Consensus 305 LVGD-VPWemFv~svK 319 (344)
.+.+ .=|++.+..++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 54 TISSDEDLEEAIEEAR 69 (81)
T ss_pred EeCCHHHHHHHHHHHh
Confidence 9887 67777777765
No 5
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.89 E-value=0.0028 Score=52.15 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=51.1
Q ss_pred eeEEEeeCCCccceeecC---CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCC
Q 019236 226 YVKVSMDGAPYLRKVDLK---IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD 302 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs---~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD 302 (344)
-|||.-+|.-+=-++++. ..-+|++|...+.+.|.. ....+|+|.|.|.|||
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd 56 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD 56 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence 489999999444455543 467999999999999964 0125899999999999
Q ss_pred eEEcCCcChHHHHhhcee
Q 019236 303 WMLVGDVPWDMFTETCRR 320 (344)
Q Consensus 303 wMLVGDVPWemFv~svKR 320 (344)
|..+-.. +.|..++.+
T Consensus 57 ~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 57 VVTLVDD--NDLTDAIQY 72 (91)
T ss_pred EEEEccH--HHHHHHHHH
Confidence 9988765 555555544
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.79 E-value=0.0045 Score=49.93 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=44.3
Q ss_pred eeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE
Q 019236 226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML 305 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 305 (344)
=|||...|. -+.+-|..--+|++|...+.++|.. + +...|.|-|.|.||||.+
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~--------------~-----------~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL--------------D-----------DMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC--------------C-----------CCCeeEEEEECCCCCeEE
Confidence 389999887 5556666667999999999999964 0 125899999999999987
Q ss_pred cC
Q 019236 306 VG 307 (344)
Q Consensus 306 VG 307 (344)
+-
T Consensus 55 lt 56 (82)
T cd06407 55 LT 56 (82)
T ss_pred ee
Confidence 64
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.19 E-value=0.014 Score=47.70 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=45.3
Q ss_pred eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
|||.-.|.-+--+++-+..-+|++|...+.++|.. + .|.|.|-|.||||.++
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l 54 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV 54 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence 78999999777777777788999999999999974 1 5789999999999876
Q ss_pred C
Q 019236 307 G 307 (344)
Q Consensus 307 G 307 (344)
-
T Consensus 55 s 55 (81)
T cd06396 55 N 55 (81)
T ss_pred E
Confidence 3
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=95.94 E-value=0.041 Score=45.10 Aligned_cols=74 Identities=18% Similarity=0.378 Sum_probs=50.2
Q ss_pred eeEEEeeCCCccceeecCCC-CChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 226 YVKVSMDGAPYLRKVDLKIY-SNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs~y-~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
-+|+.-+|. -|++=+..- -+|.+|...+.+.|... .+ ....+.+.|.|.|||+.
T Consensus 2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~----~~-------------------~~~~flIKYkD~dGDlV 56 (81)
T cd06401 2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK----LG-------------------SSDDVLIKYKDEDGDLI 56 (81)
T ss_pred eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc----cC-------------------CcccEEEEEECCCCCEE
Confidence 367777666 466544442 39999999999999741 11 12478999999999999
Q ss_pred EcCCc---ChHHHHhhceeeEEe
Q 019236 305 LVGDV---PWDMFTETCRRLRIM 324 (344)
Q Consensus 305 LVGDV---PWemFv~svKRLrIm 324 (344)
-+.+- -|..=+...+||+|.
T Consensus 57 TIts~~dL~~A~~~~~~~~l~~~ 79 (81)
T cd06401 57 TIFDSSDLSFAIQCSRILKLTLF 79 (81)
T ss_pred EeccHHHHHHHHhcCcceEEEEe
Confidence 99874 344333444455553
No 9
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.19 E-value=0.092 Score=43.34 Aligned_cols=59 Identities=24% Similarity=0.489 Sum_probs=44.2
Q ss_pred ceeEEEeeC---CCccceeec--CCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcC
Q 019236 225 LYVKVSMDG---APYLRKVDL--KIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDK 299 (344)
Q Consensus 225 ~fVKV~MDG---~pIGRKVDL--s~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDk 299 (344)
+.||.+..| .+=-|++=| ....+|++|...+.+||.. +.+..|+|.|.|.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De 55 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE 55 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence 367888877 233354444 6667999999999999963 1235899999999
Q ss_pred CCCeEEcCC
Q 019236 300 DGDWMLVGD 308 (344)
Q Consensus 300 EGDwMLVGD 308 (344)
|||..-+..
T Consensus 56 eGDlvtIss 64 (87)
T cd06402 56 EGDLVAFSS 64 (87)
T ss_pred CCCEEeecC
Confidence 999987765
No 10
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=95.12 E-value=0.048 Score=44.68 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=50.0
Q ss_pred eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
||..-|..=-=-.+|.....+|+++++-|+.||.. .+-.|+|.|.|.+||.+-+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI 56 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI 56 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence 66666666222234555569999999999999974 1247899999999999977
Q ss_pred C-CcChHHHHhhcee
Q 019236 307 G-DVPWDMFTETCRR 320 (344)
Q Consensus 307 G-DVPWemFv~svKR 320 (344)
- |.-+..-+.++++
T Consensus 57 nNDdNf~kAlssa~p 71 (80)
T cd06403 57 NNDDNFLKALSSANP 71 (80)
T ss_pred cCcHHHHHHHHcCCC
Confidence 5 5666666777773
No 11
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.73 E-value=0.069 Score=43.97 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=38.1
Q ss_pred CCccceeecC--CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcC
Q 019236 234 APYLRKVDLK--IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 307 (344)
Q Consensus 234 ~pIGRKVDLs--~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVG 307 (344)
.|-||.+=++ ...||.+|..++.+=|+. +.. ....|.|.|.|.||||.+.-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~--------------d~~---------~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGD--------------DDF---------ETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCC--------------ccc---------cCCcccEEEEcCCCCEEEEe
Confidence 4567766554 378999999999999964 100 02478999999999998874
No 12
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.54 E-value=0.091 Score=43.31 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=44.1
Q ss_pred eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
||+.-.|.-.--.+|. .-+|++|.+.+.+||.. ..+..|++.|.|.|||---+
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti 55 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI 55 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence 7899999855555565 77899999999999974 12357999999999998776
Q ss_pred CC
Q 019236 307 GD 308 (344)
Q Consensus 307 GD 308 (344)
..
T Consensus 56 SS 57 (83)
T cd06404 56 SS 57 (83)
T ss_pred cC
Confidence 54
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=94.15 E-value=0.16 Score=41.84 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=51.2
Q ss_pred eEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 227 VKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 227 VKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
-||+-+|. .|++-...-=+|..|.+.|+.+|.... -.+.|+|.|.|||..-+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl 54 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL 54 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence 48888887 899998889999999999999997511 13789999999998865
Q ss_pred CC-cChHHHHhhcee
Q 019236 307 GD-VPWDMFTETCRR 320 (344)
Q Consensus 307 GD-VPWemFv~svKR 320 (344)
-| .=.+.|..-..|
T Consensus 55 ssd~eL~d~~~~~~~ 69 (82)
T cd06397 55 SSNKELQDFYRLSHR 69 (82)
T ss_pred cchHHHHHHHHhccc
Confidence 54 556666654444
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.99 E-value=1 Score=37.23 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=50.8
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
.=|||+-.|. .|-|-+..--+|++|...+.++|.. ...+.|-|.|. ||..
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i 52 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence 3489998888 6777777778899999999999964 12678999999 9999
Q ss_pred EcCCc-ChHHHHhhce
Q 019236 305 LVGDV-PWDMFTETCR 319 (344)
Q Consensus 305 LVGDV-PWemFv~svK 319 (344)
-++|- =.++-+.++|
T Consensus 53 ti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 53 TMGDQDDLDMAIDTAR 68 (86)
T ss_pred cccCHHHHHHHHHHHH
Confidence 88873 4455555555
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=56.16 E-value=19 Score=30.49 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=29.9
Q ss_pred eecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 240 VDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 240 VDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
=||+..-.|.+|..-..+-|.. .+-+|-|.|.|||..
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~----------------------------~dIaLNYrD~EGDLI 58 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLI 58 (92)
T ss_pred cccccCccHHHHHHHHHHHhch----------------------------hheeeeeecCCCCEE
Confidence 3788888999999988888853 134789999999974
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=45.71 E-value=17 Score=27.26 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeEEcCCc
Q 019236 293 VLTYEDKDGDWMLVGDV 309 (344)
Q Consensus 293 vLtYEDkEGDwMLVGDV 309 (344)
-+.|.|.||+++++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 47899999999999974
No 17
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=44.62 E-value=1e+02 Score=25.41 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=48.7
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCC-Ce
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDG-DW 303 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG-Dw 303 (344)
.-|||+-.+ .=-|-...=-+|.+|...|.+=+.. ++.+-+|.|.|.+. +.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl--------------------------~~e~i~LsYkde~s~~~ 53 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLEL--------------------------PAEHITLSYKSEASGED 53 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCC--------------------------CchhcEEEeccCCCCCc
Confidence 358999997 3345566667899999999988853 11244799998874 44
Q ss_pred EEcCCcChHHHHhhce
Q 019236 304 MLVGDVPWDMFTETCR 319 (344)
Q Consensus 304 MLVGDVPWemFv~svK 319 (344)
..++|-=|+.-.+.|+
T Consensus 54 v~l~d~dle~aws~~~ 69 (80)
T cd06406 54 VILSDTNMEDVWSQAK 69 (80)
T ss_pred cCcChHHHHHHHHhhc
Confidence 4559999998888887
No 18
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=40.18 E-value=50 Score=27.83 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=34.6
Q ss_pred eCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcC
Q 019236 232 DGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 307 (344)
Q Consensus 232 DG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVG 307 (344)
+|..+--.||...+=+|.++..++.+....-| --.+-|||.|||++-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT---------------------------~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccccc---------------------------ccceeeccccCCeeEec
Confidence 34556667777777889999888887764311 11366999999988774
No 19
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=39.21 E-value=11 Score=34.46 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=10.2
Q ss_pred CCccccccccCCCCCCC
Q 019236 48 LNFKETELRLGLPGSQS 64 (344)
Q Consensus 48 lnlk~TELRLGLPGs~s 64 (344)
-||--..=|||.|||.|
T Consensus 93 ADlvIARGRLGvPGSGS 109 (154)
T PF11576_consen 93 ADLVIARGRLGVPGSGS 109 (154)
T ss_dssp -SEEEEEEE-SSTTS-E
T ss_pred CcEEEEcccccCCCCcc
Confidence 34444566999999985
No 20
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=31.92 E-value=21 Score=33.21 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=31.3
Q ss_pred hhhhcccCCCceEEEEEcCCCCeEEcCCcChHHHHhhceeeE
Q 019236 281 SRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLR 322 (344)
Q Consensus 281 ~~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 322 (344)
.-|.+.|.-.+|..-|.+. .|..|.||+.+++.++||.
T Consensus 89 d~L~~~L~~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 89 DLLVDALKLLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred HHHHHHHHhCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 3466777777999999765 8889999999999999873
No 21
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=26.83 E-value=87 Score=31.75 Aligned_cols=79 Identities=28% Similarity=0.367 Sum_probs=56.9
Q ss_pred cceeEEEeeCCCccceeecC--CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCC
Q 019236 224 CLYVKVSMDGAPYLRKVDLK--IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDG 301 (344)
Q Consensus 224 ~~fVKV~MDG~pIGRKVDLs--~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG 301 (344)
.+-||-..|-. =|..-|. .-.+|++++.-|+++-.+ .+.++.|-|.|.-|
T Consensus 18 ~veVKSKFdaE--fRRfsl~r~~~~~f~~F~~Lv~~~H~i--------------------------~nvdvllgY~d~hg 69 (358)
T KOG3606|consen 18 TVEVKSKFDAE--FRRFSLPRHSASSFDEFYSLVEHLHHI--------------------------PNVDVLLGYADTHG 69 (358)
T ss_pred eEEeeccccch--hheecccccCcccHHHHHHHHHHHhcC--------------------------CCceEEEEEecCCC
Confidence 44566666555 4555554 446899999999988854 23478899999999
Q ss_pred CeEEcC-CcChHHHHhhce---eeEEecCcccc
Q 019236 302 DWMLVG-DVPWDMFTETCR---RLRIMKGSEAI 330 (344)
Q Consensus 302 DwMLVG-DVPWemFv~svK---RLrImk~Sea~ 330 (344)
|.+-+- |.-+.--+.+++ ||-|-|..||.
T Consensus 70 DLLPinNDDn~~ka~~sa~PlLR~~iQkr~ea~ 102 (358)
T KOG3606|consen 70 DLLPINNDDNLHKALSSARPLLRLLIQKREEAD 102 (358)
T ss_pred ceecccCchhHHHHhhccCchhhhhhhhhhhhh
Confidence 999764 567777777777 77787876663
No 22
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.33 E-value=31 Score=32.89 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=31.6
Q ss_pred hhhhhcccCCCceEEEEEcCCCCeEEcCCcChHHHHhhceeeE
Q 019236 280 ESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLR 322 (344)
Q Consensus 280 e~~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 322 (344)
..-|.|.|..-+|.+-|.+ || |=-+.||+.|++.|++|.
T Consensus 91 ~~vl~daLk~~GyrVevr~---~~-l~T~ap~~ev~E~vreLs 129 (204)
T COG3286 91 PDVLIDALKLLGYRVEVRG---GE-LKTNAPWSEVVELVRELS 129 (204)
T ss_pred HHHHHHHHHhCCceEEeeC---ce-eecCCCHHHHHHHHHHHH
Confidence 3446777888899999974 55 889999999999999873
No 23
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=1e+02 Score=31.19 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=51.6
Q ss_pred eCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEc--CCCCeEEcCCc
Q 019236 232 DGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYED--KDGDWMLVGDV 309 (344)
Q Consensus 232 DG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYED--kEGDwMLVGDV 309 (344)
+|-|.|| +..|++-+||++.++.-|.+.. .|. + -+|.-+ -|=+.||-|-.
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~-----------~dI---------l-----fcTlNshKvDM~~llgGqi 113 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISP-----------DDI---------L-----FCTLNSHKVDMKRLLGGQI 113 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCc-----------cce---------E-----EEecCCCcccHHHHhcCcc
Confidence 4556776 4578999999999999997621 010 0 122222 34456888888
Q ss_pred ChHHHHh-----hceeeEEecCccccCCc
Q 019236 310 PWDMFTE-----TCRRLRIMKGSEAIGLA 333 (344)
Q Consensus 310 PWemFv~-----svKRLrImk~Sea~gla 333 (344)
-.+.|+= -.|-++|+|+.++.||.
T Consensus 114 gleDfiFAHvkGq~kEv~v~KsedalGlT 142 (334)
T KOG3938|consen 114 GLEDFIFAHVKGQAKEVEVVKSEDALGLT 142 (334)
T ss_pred ChhhhhhhhhcCcceeEEEEecccccceE
Confidence 8888874 45679999999998875
No 24
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=24.88 E-value=79 Score=29.70 Aligned_cols=48 Identities=27% Similarity=0.732 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCeEEcCCcChHH------------------HHhhceeeEEecCccccCCchhhHhh
Q 019236 289 GSEYVLTYEDKDGDWMLVGDVPWDM------------------FTETCRRLRIMKGSEAIGLAPRAMEK 339 (344)
Q Consensus 289 gseyvLtYEDkEGDwMLVGDVPWem------------------Fv~svKRLrImk~Sea~glapr~~ek 339 (344)
..+++.+|+..+|+|-++.+.|..+ |+..|| |+-..++.|++--..++
T Consensus 18 e~G~v~vy~~~~g~W~~~~e~~f~~~~~~~l~~iR~~~~~li~~L~dCk---ifV~~~v~Gi~y~~Le~ 83 (202)
T PF09582_consen 18 EPGFVRVYEKDDGKWKVIREIPFELCDAKGLAEIRQKISELIEFLGDCK---IFVAKSVSGIPYSLLEK 83 (202)
T ss_pred CCcEEEEEECCCCceEEeEEEEeccCCCCCHHHHHHHHHHHHHHhCCcE---EEEEccccCccHHHHHH
Confidence 4689999999999999999999983 555554 55566677776655554
No 25
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=22.38 E-value=56 Score=34.18 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCcceeEEEeeCCCccceeec------------------CCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhh
Q 019236 222 SGCLYVKVSMDGAPYLRKVDL------------------KIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRL 283 (344)
Q Consensus 222 ~~~~fVKV~MDG~pIGRKVDL------------------s~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L 283 (344)
....|.=|.|||.-+|.-+.= ....-|..|+.+|..-|.....
T Consensus 340 ~~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~------------------- 400 (482)
T TIGR02577 340 PRPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVK------------------- 400 (482)
T ss_pred CCceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 345688899999999987752 2334578888888877743110
Q ss_pred hcccCCCceEEEEEcCCCCeEEcCCcChHHHHhhceeeE
Q 019236 284 MDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFTETCRRLR 322 (344)
Q Consensus 284 ~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 322 (344)
.+......++|---| |.|+++ ||+.-+..+++|+
T Consensus 401 --~v~~~~g~~VYaGGD-Dvlai~--p~~~al~~a~~l~ 434 (482)
T TIGR02577 401 --IVVNEHGELVYAGGD-DVLALL--PVDTALDVAKELR 434 (482)
T ss_pred --HhhhhCeEEEEEccC-cEEEEc--cHHHHHHHHHHHH
Confidence 011113578897655 677774 9997666666554
No 26
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.85 E-value=41 Score=30.55 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=11.5
Q ss_pred CccccccccCCCCCCC
Q 019236 49 NFKETELRLGLPGSQS 64 (344)
Q Consensus 49 nlk~TELRLGLPGs~s 64 (344)
+|--..=|||.|||.|
T Consensus 95 DlvIARGRLGvPGSGs 110 (156)
T COG4019 95 DLVIARGRLGVPGSGS 110 (156)
T ss_pred cEEEeeccccCCCCCc
Confidence 3333456999999986
Done!