Query 019236
Match_columns 344
No_of_seqs 201 out of 555
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.5 0.0064 2.2E-07 49.0 7.1 73 221-319 3-76 (86)
2 1vd2_A Protein kinase C, IOTA 95.6 0.033 1.1E-06 44.8 7.0 58 223-307 5-62 (89)
3 2kkc_A Sequestosome-1; P62, PB 94.8 0.046 1.6E-06 45.0 5.7 71 224-319 5-91 (102)
4 2ktr_A Sequestosome-1; autopha 94.2 0.077 2.6E-06 44.8 5.8 72 223-319 19-106 (117)
5 1q1o_A Cell division control p 91.1 0.89 3E-05 37.3 8.0 76 223-319 4-86 (98)
6 1pqs_A Cell division control p 78.9 2.1 7.2E-05 33.4 4.1 57 242-319 8-65 (77)
7 1oey_J P40-PHOX, neutrophil cy 77.5 3.4 0.00011 34.5 5.1 40 241-308 28-67 (107)
8 2bkf_A Zinc-finger protein NBR 74.9 5.5 0.00019 32.1 5.6 55 225-307 7-61 (87)
9 1oey_A P67-PHOX, neutrophil cy 71.5 13 0.00045 29.4 7.0 70 225-323 6-78 (83)
10 1wj6_A KIAA0049 protein, RSGI 69.2 5.6 0.00019 32.9 4.5 64 225-318 15-78 (101)
11 3o27_A Putative uncharacterize 47.6 6 0.00021 30.7 1.0 21 286-306 39-59 (68)
12 1e8p_A Endoglucanase, dockerin 45.9 5.8 0.0002 28.7 0.7 13 293-305 20-32 (46)
13 3brc_A Conserved protein of un 40.7 6.8 0.00023 34.5 0.5 17 48-64 94-110 (156)
14 3c8c_A Methyl-accepting chemot 24.6 25 0.00085 28.6 1.2 35 288-322 203-238 (240)
15 2npt_A Dual specificity mitoge 23.7 1E+02 0.0035 25.4 4.7 56 225-307 15-71 (106)
16 2j4m_A Endoglucanase 45A; dock 20.9 20 0.0007 29.6 -0.0 13 293-305 21-33 (100)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.54 E-value=0.0064 Score=48.99 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCC
Q 019236 221 GSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKD 300 (344)
Q Consensus 221 g~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkE 300 (344)
+.+.+-||..-|..--=-.+|-....+|++|...|+++|.. ....|++.|.|.|
T Consensus 3 ~~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~d 56 (86)
T 1wmh_B 3 HMSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAH 56 (86)
T ss_dssp --CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTT
T ss_pred CCCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCC
Confidence 34567899998888333345555778999999999999963 1237899999999
Q ss_pred CCeEEcCC-cChHHHHhhce
Q 019236 301 GDWMLVGD-VPWDMFTETCR 319 (344)
Q Consensus 301 GDwMLVGD-VPWemFv~svK 319 (344)
||++-+-+ .=..+-+.++|
T Consensus 57 GDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 57 GDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp SCEEECCSHHHHHHHTTSSS
T ss_pred CCEeeecCHHHHHHHHHhCC
Confidence 99998865 45556666777
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.58 E-value=0.033 Score=44.82 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=44.8
Q ss_pred CcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCC
Q 019236 223 GCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGD 302 (344)
Q Consensus 223 ~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD 302 (344)
+.+=|||+-.|.- |.+.+...-+|++|...|.++|.. ..+..+++.|.|.|||
T Consensus 5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD 57 (89)
T 1vd2_A 5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD 57 (89)
T ss_dssp SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence 4567999999984 455555567999999999999974 1134789999999999
Q ss_pred eEEcC
Q 019236 303 WMLVG 307 (344)
Q Consensus 303 wMLVG 307 (344)
+.-+-
T Consensus 58 ~itis 62 (89)
T 1vd2_A 58 PCTVS 62 (89)
T ss_dssp CEECC
T ss_pred ccccc
Confidence 87654
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.78 E-value=0.046 Score=44.96 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=49.1
Q ss_pred cceeEEEeeCC----CccceeecCC-----------CCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccC
Q 019236 224 CLYVKVSMDGA----PYLRKVDLKI-----------YSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLH 288 (344)
Q Consensus 224 ~~fVKV~MDG~----pIGRKVDLs~-----------y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~ 288 (344)
++-||++..|. .=-|++=|.. ..+|++|...+.++|.. +.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~ 59 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR 59 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence 56788888762 2345555532 24899999999999963 12
Q ss_pred CCceEEEEEcCCCCeEEcCCc-ChHHHHhhce
Q 019236 289 GSEYVLTYEDKDGDWMLVGDV-PWDMFTETCR 319 (344)
Q Consensus 289 gseyvLtYEDkEGDwMLVGDV-PWemFv~svK 319 (344)
+..|.|.|.|.|||+.-+-+. =..+-+.+++
T Consensus 60 ~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 457999999999999877663 3344444443
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.17 E-value=0.077 Score=44.81 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=49.7
Q ss_pred CcceeEEEeeCC----CccceeecC-----------CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhccc
Q 019236 223 GCLYVKVSMDGA----PYLRKVDLK-----------IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLL 287 (344)
Q Consensus 223 ~~~fVKV~MDG~----pIGRKVDLs-----------~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll 287 (344)
..+-||++..|. .==|++=|. .-.+|++|...+.++|.. +
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L 73 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L 73 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence 468899999752 123555553 135999999999999953 1
Q ss_pred CCCceEEEEEcCCCCeEEcCCc-ChHHHHhhce
Q 019236 288 HGSEYVLTYEDKDGDWMLVGDV-PWDMFTETCR 319 (344)
Q Consensus 288 ~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK 319 (344)
.+..|.|.|.|.|||+.-+-.. =..+-+.+++
T Consensus 74 ~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 2457999999999998877653 3444444444
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.10 E-value=0.89 Score=37.28 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=55.0
Q ss_pred CcceeEEEeeCCC----c--cceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEE
Q 019236 223 GCLYVKVSMDGAP----Y--LRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTY 296 (344)
Q Consensus 223 ~~~fVKV~MDG~p----I--GRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtY 296 (344)
+++-|||+-+... + .|.|=+..--+|++|...+.+-|..+.. +. . .....|-|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----------~~--------i--~~~~klkY 62 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----------NN--------I--SPITKIKY 62 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----------SC--------C--CCCCCEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----------cc--------c--cceeEEEE
Confidence 4567888877431 2 3677777888999999999999975310 00 0 12357999
Q ss_pred EcCCCCeEEcCC-cChHHHHhhce
Q 019236 297 EDKDGDWMLVGD-VPWDMFTETCR 319 (344)
Q Consensus 297 EDkEGDwMLVGD-VPWemFv~svK 319 (344)
+|.|||+...++ .=|+|-+.+++
T Consensus 63 kDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 63 QDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EcCCCCEEEEcCHHHHHHHHHHHH
Confidence 999999988876 58999888863
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.86 E-value=2.1 Score=33.40 Aligned_cols=57 Identities=21% Similarity=0.436 Sum_probs=41.0
Q ss_pred cCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcCC-cChHHHHhhce
Q 019236 242 LKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWDMFTETCR 319 (344)
Q Consensus 242 Ls~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~svK 319 (344)
...--+|++|...+.+-|..+ .+.+. .....|-|+|.|||+...++ .=|+|-+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-----~~~~~----------------~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-----HNNNI----------------SPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-----TSSCS----------------CSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-----ccccc----------------cceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 445568999999999998642 00000 12457899999999987765 68999988874
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=77.53 E-value=3.4 Score=34.55 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=32.3
Q ss_pred ecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcCC
Q 019236 241 DLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD 308 (344)
Q Consensus 241 DLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD 308 (344)
||+.--.|++|..-..+-|.. .+-+|-|.|.||||.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~----------------------------~DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC----------------------------SSEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhcc----------------------------cceeeeeecCCCCEEEEcc
Confidence 677778999999999999953 1447999999999976544
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=74.88 E-value=5.5 Score=32.09 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=40.8
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
.=+||.--|...=--|.-..--++++|...+..+|+. +.++|.|-|.|||-.
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------------------~~~~ikY~DEenD~v 58 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 58 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEEcCCCCEE
Confidence 3478888888433335334477899999999999963 267999999999987
Q ss_pred EcC
Q 019236 305 LVG 307 (344)
Q Consensus 305 LVG 307 (344)
-|=
T Consensus 59 ~i~ 61 (87)
T 2bkf_A 59 SIN 61 (87)
T ss_dssp EEC
T ss_pred EEe
Confidence 663
No 9
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.54 E-value=13 Score=29.41 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=53.8
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEc-CCCCe
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYED-KDGDW 303 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYED-kEGDw 303 (344)
+=|||+-. +.-.|....=-+|.+|...|.+=+..- ..+-.|-|.| .+|.|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--------------------------~~~~~LsYk~~~s~~~ 56 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--------------------------LEHTKLSYRPRDSNEL 56 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--------------------------GGGCCEEECCTTCSSC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--------------------------cceeEEEeeCCCCCCe
Confidence 45777766 677888888889999999999888530 1123689999 68899
Q ss_pred EEcCCcChHHHHhhce--eeEE
Q 019236 304 MLVGDVPWDMFTETCR--RLRI 323 (344)
Q Consensus 304 MLVGDVPWemFv~svK--RLrI 323 (344)
++.+|.=|+.-...++ ||++
T Consensus 57 vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 57 VPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EECCTTTHHHHHTTCBTTEEEE
T ss_pred eccChHHHHHHHHhccCCcEEE
Confidence 9999999998887755 5554
No 10
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=69.25 E-value=5.6 Score=32.89 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=46.2
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
.-+||.--|...=--|.-..--++++|...|..+|+. +.++|.|-|.|||-.
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L----------------------------~~~~IkY~DEenD~V 66 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 66 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC----------------------------SSBCCEEECTTSCEE
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEecCCCCEE
Confidence 4688999998433336444477899999999999963 256899999999988
Q ss_pred EcCCcChHHHHhhc
Q 019236 305 LVGDVPWDMFTETC 318 (344)
Q Consensus 305 LVGDVPWemFv~sv 318 (344)
-|=- +..|-+.+
T Consensus 67 ~i~S--q~E~eEAl 78 (101)
T 1wj6_A 67 SINS--QGEYEEAL 78 (101)
T ss_dssp CCCS--HHHHHHHH
T ss_pred EEec--HHHHHHHH
Confidence 7743 55554443
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=47.60 E-value=6 Score=30.69 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=17.6
Q ss_pred ccCCCceEEEEEcCCCCeEEc
Q 019236 286 LLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 286 ll~gseyvLtYEDkEGDwMLV 306 (344)
+-.|.+|.+++||++|+.+|+
T Consensus 39 Ik~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 39 IKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp CCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEEecCCCeEEEE
Confidence 344679999999999999886
No 12
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=45.91 E-value=5.8 Score=28.71 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 019236 293 VLTYEDKDGDWML 305 (344)
Q Consensus 293 vLtYEDkEGDwML 305 (344)
.|+|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4889999999954
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=40.72 E-value=6.8 Score=34.53 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=12.6
Q ss_pred CCccccccccCCCCCCC
Q 019236 48 LNFKETELRLGLPGSQS 64 (344)
Q Consensus 48 lnlk~TELRLGLPGs~s 64 (344)
-||--..=|||.|||.|
T Consensus 94 ADlvIARGRLGvPGSGS 110 (156)
T 3brc_A 94 ADLVIARGRLGVPGSGS 110 (156)
T ss_dssp CSEEEEEEECSSTTSCE
T ss_pred CcEEEEcccccCCCCcc
Confidence 34555566999999985
No 14
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=24.57 E-value=25 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=28.2
Q ss_pred CCCceEEEEEcC-CCCeEEcCCcChHHHHhhceeeE
Q 019236 288 HGSEYVLTYEDK-DGDWMLVGDVPWDMFTETCRRLR 322 (344)
Q Consensus 288 ~gseyvLtYEDk-EGDwMLVGDVPWemFv~svKRLr 322 (344)
+|.+|.+.|.-- ..+|.+|.-+|...+...+++|+
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 456788888754 45899999999999998887765
No 15
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=23.69 E-value=1e+02 Score=25.45 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceeEEEee-CCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCe
Q 019236 225 LYVKVSMD-GAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDW 303 (344)
Q Consensus 225 ~fVKV~MD-G~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDw 303 (344)
+-+.+... |..+--.||-..+=+|.+|..++.+....-| --.+-|||.+||+
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT---------------------------~TAFeYEDE~gDR 67 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDR 67 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC---------------------------CSEEEEECTTSCE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce---------------------------eeeeeeccccCCe
Confidence 44555554 5556667776677789999999887774311 1246799999998
Q ss_pred EEcC
Q 019236 304 MLVG 307 (344)
Q Consensus 304 MLVG 307 (344)
+-|-
T Consensus 68 ITVR 71 (106)
T 2npt_A 68 ITVR 71 (106)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 8774
No 16
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=20.92 E-value=20 Score=29.56 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred EEEEEcCCCCeEE
Q 019236 293 VLTYEDKDGDWML 305 (344)
Q Consensus 293 vLtYEDkEGDwML 305 (344)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999954
Done!