Query 019236
Match_columns 344
No_of_seqs 201 out of 555
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019236.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019236hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 96.6 0.0016 1.2E-07 50.5 5.7 66 225-318 5-71 (85)
2 d1ip9a_ d.15.2.2 (A:) Bud emer 95.8 0.0092 6.7E-07 45.1 6.2 72 222-323 10-82 (85)
3 d1wmhb_ d.15.2.2 (B:) Partitio 84.2 0.88 6.4E-05 34.6 5.6 55 239-319 17-72 (82)
4 d1oeyj_ d.15.2.2 (J:) Neutroph 62.7 5.3 0.00039 31.3 5.1 39 240-306 25-63 (105)
5 d1e8qa_ g.55.1.1 (A:) Cellulos 51.9 1.9 0.00014 29.5 0.7 14 292-305 19-32 (46)
6 d1pqsa_ d.15.2.2 (A:) Cell div 50.0 6 0.00044 29.5 3.3 55 244-319 10-65 (77)
7 d1wmha_ d.15.2.2 (A:) Protein 36.4 30 0.0022 25.9 5.4 53 226-305 3-55 (83)
8 d2npta1 d.15.2.2 (A:4-108) Mit 34.8 24 0.0017 27.4 4.7 55 226-307 15-70 (105)
9 d1t3ba2 d.17.3.1 (A:2-60) Disu 32.4 8.5 0.00062 26.7 1.5 17 293-309 34-50 (59)
10 d1eeja2 d.17.3.1 (A:1-60) Disu 26.9 16 0.0012 25.2 2.2 17 293-309 35-51 (60)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.57 E-value=0.0016 Score=50.47 Aligned_cols=66 Identities=8% Similarity=0.139 Sum_probs=51.0
Q ss_pred ceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 225 LYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 225 ~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
.=|||...|..+=-+|-+....+|.+|...|.+.|.. ..+.|.|.|.|+||.
T Consensus 5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v 56 (85)
T d2bkfa1 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 56 (85)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence 4589999888655577777889999999999999963 146799999999998
Q ss_pred EcC-CcChHHHHhhc
Q 019236 305 LVG-DVPWDMFTETC 318 (344)
Q Consensus 305 LVG-DVPWemFv~sv 318 (344)
++. |.=.++.+..+
T Consensus 57 ~l~~d~dl~E~~~~a 71 (85)
T d2bkfa1 57 SINSQGEYEEALKMA 71 (85)
T ss_dssp EECSHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHH
Confidence 775 44555555544
No 2
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.76 E-value=0.0092 Score=45.07 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCcceeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCC
Q 019236 222 SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDG 301 (344)
Q Consensus 222 ~~~~fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG 301 (344)
.+..=|||+..+. -|.+=|..--+|.+|...+.+.|.. ..++|-|+|.||
T Consensus 10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedg 59 (85)
T d1ip9a_ 10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDG 59 (85)
T ss_dssp CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSS
T ss_pred CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCC
Confidence 4567899999988 4555556668999999999999953 147899999999
Q ss_pred CeEEcCC-cChHHHHhhceeeEE
Q 019236 302 DWMLVGD-VPWDMFTETCRRLRI 323 (344)
Q Consensus 302 DwMLVGD-VPWemFv~svKRLrI 323 (344)
||..+-+ .=+++-+....||.+
T Consensus 60 d~v~i~sD~Dl~~ai~~~~kl~v 82 (85)
T d1ip9a_ 60 SGEEIKTDSQVSNIIQAKLKISV 82 (85)
T ss_dssp CCSCCCSHHHHHHHHHTTCCEEE
T ss_pred CEEEEeCHHHHHHHHHhcCcEEE
Confidence 9986654 456666665555544
No 3
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.23 E-value=0.88 Score=34.57 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=43.2
Q ss_pred eeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEcCC-cChHHHHhh
Q 019236 239 KVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWDMFTET 317 (344)
Q Consensus 239 KVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~s 317 (344)
.+|.....+|++.+.-|+.|-.. .+-+++|.|.|.+||.+-+-. .-+.--+.+
T Consensus 17 sl~r~~~~~fe~F~~Lle~~H~l--------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~s 70 (82)
T d1wmhb_ 17 ALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALAS 70 (82)
T ss_dssp EEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTS
T ss_pred eeccccccCHHHHHHHHHHHcCC--------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHh
Confidence 57777889999999999999864 224789999999999998754 455555666
Q ss_pred ce
Q 019236 318 CR 319 (344)
Q Consensus 318 vK 319 (344)
|+
T Consensus 71 a~ 72 (82)
T d1wmhb_ 71 GP 72 (82)
T ss_dssp SS
T ss_pred cC
Confidence 66
No 4
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.70 E-value=5.3 Score=31.27 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=31.7
Q ss_pred eecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEEc
Q 019236 240 VDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWMLV 306 (344)
Q Consensus 240 VDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 306 (344)
=||+.--+|.+|..-+.+-|.. .+-+|-|.|.|||..-+
T Consensus 25 edl~~~P~ykdLl~lmr~~f~~----------------------------~dIaLNYrD~eGDLIRl 63 (105)
T d1oeyj_ 25 EDLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLVRL 63 (105)
T ss_dssp SCTTCCCCHHHHHHHHHHHHCC----------------------------SSEEEEEECTTSCEEEC
T ss_pred cccccCccHHHHHHHHHHHhcc----------------------------ceeEeeeecCCCCEEEE
Confidence 4788889999999999999953 24579999999997543
No 5
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=51.86 E-value=1.9 Score=29.49 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.5
Q ss_pred eEEEEEcCCCCeEE
Q 019236 292 YVLTYEDKDGDWML 305 (344)
Q Consensus 292 yvLtYEDkEGDwML 305 (344)
-.|+|+|.||||=.
T Consensus 19 ~~V~ytD~dG~WGV 32 (46)
T d1e8qa_ 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred CeEEEecCCCcccc
Confidence 35899999999954
No 6
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.02 E-value=6 Score=29.46 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=36.1
Q ss_pred CCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE-cCCcChHHHHhhce
Q 019236 244 IYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML-VGDVPWDMFTETCR 319 (344)
Q Consensus 244 ~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML-VGDVPWemFv~svK 319 (344)
.--+|++|...+.+--. .|+..+.. . --.|-|+|.|||... -.|.-|.|-..+.|
T Consensus 10 ~~i~f~~L~~kI~~Kia-----~~~~~~~~---~-------------~~rlrY~DeDGD~V~i~sddd~~~a~~~~~ 65 (77)
T d1pqsa_ 10 KVWNFDDLIMAINSKIS-----NTHNNNIS---P-------------ITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp TCCCSHHHHHHHHHHTT-----TTTSSCSC---S-------------TTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHH-----hccCCCCC---c-------------cceEEEEcCCCCEEEEeccchHHHHHHHHH
Confidence 34579999999986643 34432211 0 115889999999755 46788988766554
No 7
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.42 E-value=30 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=40.2
Q ss_pred eeEEEeeCCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeEE
Q 019236 226 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWML 305 (344)
Q Consensus 226 fVKV~MDG~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 305 (344)
-||+.-.|..+---+|.. -+|++|...+..|... . ...-|++-+.|.|||=--
T Consensus 3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f-~------------------------~~q~fT~KWiDeEGDPCT 55 (83)
T d1wmha_ 3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSF-D------------------------NEQLFTMKWIDEEGDPCT 55 (83)
T ss_dssp EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTC-C------------------------TTCCCEEEEECTTSCEEE
T ss_pred EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCC-C------------------------cCCcEEEEEEcCCCCcee
Confidence 478888888777666654 5899999999999864 1 013578999999999543
No 8
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.85 E-value=24 Score=27.41 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=34.9
Q ss_pred eeEEEee-CCCccceeecCCCCChHHHHHHHHHhhccccccccCCCCCCCCCCcchhhhhcccCCCceEEEEEcCCCCeE
Q 019236 226 YVKVSMD-GAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDKDGDWM 304 (344)
Q Consensus 226 fVKV~MD-G~pIGRKVDLs~y~sYeeLs~aLe~MF~~f~~gq~~s~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 304 (344)
-+.+... |..+--.|+.-..=++.++..++.+.-..- ..-..-|||.|||++
T Consensus 15 VIRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~~p~a---------------------------t~taFEYEDEdGDRI 67 (105)
T d2npta1 15 VIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA---------------------------TTTAFEYEDEDGDRI 67 (105)
T ss_dssp EEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS---------------------------CCSEEEEECTTSCEE
T ss_pred EEEEEcCCCceeeeeecCCceeeHHHHHHHHHHhcccc---------------------------cccceeeccccCCEe
Confidence 3444433 555666677666778999999988766320 112456999999987
Q ss_pred EcC
Q 019236 305 LVG 307 (344)
Q Consensus 305 LVG 307 (344)
-|=
T Consensus 68 TVR 70 (105)
T d2npta1 68 TVR 70 (105)
T ss_dssp EEC
T ss_pred EEc
Confidence 763
No 9
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=32.40 E-value=8.5 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=15.4
Q ss_pred EEEEEcCCCCeEEcCCc
Q 019236 293 VLTYEDKDGDWMLVGDV 309 (344)
Q Consensus 293 vLtYEDkEGDwMLVGDV 309 (344)
-+.|.|.||+.+++||+
T Consensus 34 gi~Yvs~dg~y~i~G~l 50 (59)
T d1t3ba2 34 GILYVSEDGKYLFEGKL 50 (59)
T ss_dssp EECEEESSSSCEECSCC
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 37899999999999985
No 10
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.86 E-value=16 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.3
Q ss_pred EEEEEcCCCCeEEcCCc
Q 019236 293 VLTYEDKDGDWMLVGDV 309 (344)
Q Consensus 293 vLtYEDkEGDwMLVGDV 309 (344)
-+.|.|+||..++.||+
T Consensus 35 ~i~Yvs~dG~y~i~G~l 51 (60)
T d1eeja2 35 GVLYITDDGKHIIQGPM 51 (60)
T ss_dssp EEEEEETTSCEEEESCE
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 37899999999999985
Done!