Query 019237
Match_columns 344
No_of_seqs 220 out of 3582
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.1E-34 1.1E-38 289.2 26.4 312 6-343 27-364 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-27 4E-32 241.5 20.5 243 71-322 151-397 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.4E-26 5.1E-31 205.4 4.7 271 52-342 125-399 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.5E-25 1.4E-29 196.3 8.1 284 35-342 47-372 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.5E-28 189.1 1.0 216 83-310 77-292 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.4E-28 190.1 -4.1 221 75-310 94-317 (1255)
7 PRK15370 E3 ubiquitin-protein 99.8 2.7E-17 5.8E-22 158.9 19.7 222 85-343 200-423 (754)
8 PLN03210 Resistant to P. syrin 99.8 3.9E-17 8.4E-22 167.3 19.8 220 83-318 610-859 (1153)
9 KOG0472 Leucine-rich repeat pr 99.7 9.5E-21 2.1E-25 162.9 -8.0 238 53-318 69-310 (565)
10 PRK15387 E3 ubiquitin-protein 99.7 9.4E-17 2E-21 154.5 16.7 201 84-322 242-462 (788)
11 KOG0472 Leucine-rich repeat pr 99.7 2.6E-20 5.7E-25 160.2 -6.8 243 54-324 47-294 (565)
12 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.6E-23 155.3 3.5 225 76-300 43-293 (319)
13 PRK15387 E3 ubiquitin-protein 99.7 9.9E-17 2.1E-21 154.3 15.8 214 52-310 242-470 (788)
14 PLN03210 Resistant to P. syrin 99.7 5.7E-16 1.2E-20 158.8 19.9 236 53-314 612-878 (1153)
15 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.5E-22 149.0 6.2 264 75-342 14-314 (319)
16 PRK15370 E3 ubiquitin-protein 99.7 1E-16 2.3E-21 154.8 11.2 222 52-318 199-428 (754)
17 KOG4237 Extracellular matrix p 99.7 3.7E-18 8E-23 146.7 -1.8 247 52-310 67-347 (498)
18 KOG0618 Serine/threonine phosp 99.7 4.7E-18 1E-22 160.0 -2.7 206 82-300 239-467 (1081)
19 KOG0618 Serine/threonine phosp 99.6 3E-17 6.6E-22 154.6 -1.5 224 50-297 239-488 (1081)
20 KOG4237 Extracellular matrix p 99.6 5.2E-16 1.1E-20 133.6 1.3 235 85-326 68-343 (498)
21 KOG0617 Ras suppressor protein 99.5 1E-16 2.3E-21 123.0 -4.4 184 107-303 31-217 (264)
22 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 122.8 -4.4 178 130-320 30-214 (264)
23 PLN03150 hypothetical protein; 99.5 1.1E-13 2.3E-18 133.2 14.7 150 3-169 367-526 (623)
24 KOG1909 Ran GTPase-activating 99.5 7.2E-15 1.6E-19 124.9 3.0 244 51-298 29-311 (382)
25 KOG1909 Ran GTPase-activating 99.3 4E-13 8.6E-18 114.4 1.8 239 78-317 24-310 (382)
26 KOG3207 Beta-tubulin folding c 99.3 5.5E-13 1.2E-17 116.6 1.0 217 76-298 113-339 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 9.4E-13 2E-17 118.7 -1.7 195 82-295 73-270 (722)
28 PF14580 LRR_9: Leucine-rich r 99.1 9.1E-11 2E-15 93.5 5.6 104 83-190 41-146 (175)
29 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3E-16 108.0 0.9 185 107-298 119-314 (505)
30 KOG1259 Nischarin, modulator o 99.1 8.6E-11 1.9E-15 98.6 4.5 209 75-300 205-414 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 92.5 5.2 103 183-292 41-147 (175)
32 COG4886 Leucine-rich repeat (L 99.1 3.4E-10 7.5E-15 103.9 8.0 197 88-302 97-294 (394)
33 KOG2120 SCF ubiquitin ligase, 99.0 5.3E-12 1.2E-16 105.5 -4.6 180 111-295 187-373 (419)
34 COG5238 RNA1 Ran GTPase-activa 99.0 9.2E-11 2E-15 97.0 2.6 244 52-299 30-317 (388)
35 KOG2120 SCF ubiquitin ligase, 99.0 1.2E-11 2.6E-16 103.4 -4.3 187 85-274 186-376 (419)
36 PLN03150 hypothetical protein; 99.0 1.4E-09 3E-14 105.0 8.9 110 212-323 419-533 (623)
37 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.9E-16 111.5 -4.9 202 88-307 54-255 (722)
38 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.1E-14 99.8 6.4 185 78-279 110-295 (394)
39 KOG2982 Uncharacterized conser 98.9 3E-09 6.5E-14 89.3 5.4 207 131-341 43-285 (418)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1.9E-09 4.1E-14 106.6 4.2 110 79-191 566-675 (889)
41 PF13855 LRR_8: Leucine rich r 98.8 1.8E-09 4E-14 70.8 2.5 61 237-297 1-61 (61)
42 KOG1259 Nischarin, modulator o 98.8 6.5E-10 1.4E-14 93.4 -0.9 131 108-251 283-413 (490)
43 COG5238 RNA1 Ran GTPase-activa 98.7 2.1E-08 4.5E-13 83.3 4.4 37 80-117 26-66 (388)
44 KOG4658 Apoptotic ATPase [Sign 98.7 3.8E-08 8.3E-13 97.5 7.1 105 51-165 570-675 (889)
45 KOG2982 Uncharacterized conser 98.6 3.3E-09 7.2E-14 89.0 -0.9 209 83-293 70-287 (418)
46 KOG0531 Protein phosphatase 1, 98.6 3.3E-09 7.1E-14 97.8 -2.1 128 83-223 71-198 (414)
47 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.8E-13 65.6 2.4 61 211-273 1-61 (61)
48 KOG1859 Leucine-rich repeat pr 98.6 2.4E-09 5.2E-14 99.8 -3.4 151 10-198 143-293 (1096)
49 KOG4341 F-box protein containi 98.6 4.2E-09 9.1E-14 92.2 -2.7 237 52-295 138-382 (483)
50 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.5E-13 93.3 -0.8 180 77-274 88-268 (414)
51 PF08263 LRRNT_2: Leucine rich 98.5 1.9E-07 4.1E-12 56.2 4.2 40 7-48 2-43 (43)
52 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 2.9E-13 94.9 -4.4 127 159-298 165-292 (1096)
53 KOG4579 Leucine-rich repeat (L 98.3 1E-07 2.2E-12 71.1 -1.0 132 185-322 28-163 (177)
54 KOG4579 Leucine-rich repeat (L 98.1 2.1E-07 4.4E-12 69.6 -2.2 136 159-302 28-163 (177)
55 PF12799 LRR_4: Leucine Rich r 98.1 4.7E-06 1E-10 50.2 3.6 36 262-298 2-37 (44)
56 KOG3665 ZYG-1-like serine/thre 98.0 3.3E-06 7.1E-11 81.9 3.8 138 84-225 122-264 (699)
57 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.7E-11 82.1 3.0 41 157-198 147-187 (699)
58 KOG1644 U2-associated snRNP A' 98.0 5.8E-06 1.3E-10 66.0 3.8 106 85-193 43-149 (233)
59 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.5E-10 62.9 5.9 129 86-221 21-150 (233)
60 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 48.1 3.7 37 237-274 1-37 (44)
61 KOG2739 Leucine-rich acidic nu 97.9 7.4E-06 1.6E-10 68.1 2.9 118 74-194 33-153 (260)
62 PRK15386 type III secretion pr 97.9 0.00011 2.5E-09 66.1 10.2 139 80-247 48-187 (426)
63 KOG4341 F-box protein containi 97.8 1E-06 2.2E-11 77.6 -3.3 237 52-297 164-413 (483)
64 PRK15386 type III secretion pr 97.6 0.00034 7.3E-09 63.2 8.9 138 105-272 48-188 (426)
65 KOG1947 Leucine rich repeat pr 97.5 3.6E-05 7.7E-10 72.6 0.8 115 82-197 186-308 (482)
66 KOG1947 Leucine rich repeat pr 97.4 8.2E-05 1.8E-09 70.1 2.1 189 107-297 186-413 (482)
67 KOG2739 Leucine-rich acidic nu 97.3 0.00018 4E-09 59.9 2.6 109 107-218 41-150 (260)
68 KOG2123 Uncharacterized conser 97.2 2.2E-05 4.9E-10 65.8 -3.1 103 83-190 18-123 (388)
69 KOG2123 Uncharacterized conser 97.2 2.7E-05 5.9E-10 65.4 -2.8 81 133-222 19-99 (388)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0035 7.6E-08 31.3 0.4 18 287-305 2-19 (22)
71 PF13306 LRR_5: Leucine rich r 95.7 0.019 4.1E-07 43.4 4.6 10 82-91 10-19 (129)
72 PF13306 LRR_5: Leucine rich r 95.5 0.032 7E-07 42.1 5.3 101 52-167 12-112 (129)
73 KOG4308 LRR-containing protein 95.4 0.00023 4.9E-09 66.4 -8.4 190 86-275 89-304 (478)
74 KOG4308 LRR-containing protein 95.2 0.00048 1E-08 64.2 -6.9 192 111-302 89-307 (478)
75 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 29.6 0.9 19 263-282 2-20 (22)
76 PF13516 LRR_6: Leucine Rich r 94.1 0.027 5.9E-07 28.7 1.1 23 284-306 1-23 (24)
77 PF13504 LRR_7: Leucine rich r 93.4 0.059 1.3E-06 24.9 1.4 9 288-296 4-12 (17)
78 KOG3864 Uncharacterized conser 93.2 0.025 5.5E-07 45.7 0.0 73 238-310 102-177 (221)
79 KOG3864 Uncharacterized conser 93.0 0.015 3.3E-07 46.9 -1.5 31 238-268 152-183 (221)
80 smart00369 LRR_TYP Leucine-ric 88.8 0.46 1E-05 24.5 2.2 14 285-298 2-15 (26)
81 smart00370 LRR Leucine-rich re 88.8 0.46 1E-05 24.5 2.2 14 285-298 2-15 (26)
82 smart00368 LRR_RI Leucine rich 87.3 0.58 1.3E-05 24.8 2.0 22 285-306 2-23 (28)
83 KOG0473 Leucine-rich repeat pr 78.6 0.1 2.2E-06 43.3 -4.5 83 211-298 42-124 (326)
84 KOG4242 Predicted myosin-I-bin 77.5 20 0.00043 33.5 8.8 237 52-299 214-482 (553)
85 KOG3763 mRNA export factor TAP 72.1 2.2 4.8E-05 40.1 1.6 11 239-249 272-282 (585)
86 smart00367 LRR_CC Leucine-rich 71.0 3.7 8E-05 21.1 1.7 17 284-300 1-18 (26)
87 smart00365 LRR_SD22 Leucine-ri 70.0 4.3 9.4E-05 21.1 1.8 14 261-274 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 69.7 3.5 7.5E-05 21.4 1.4 17 262-279 3-19 (26)
89 KOG3763 mRNA export factor TAP 68.2 2.4 5.2E-05 39.9 1.0 65 211-275 218-284 (585)
90 KOG0473 Leucine-rich repeat pr 67.3 0.16 3.4E-06 42.2 -6.0 83 52-146 42-124 (326)
91 PF07723 LRR_2: Leucine Rich R 29.3 39 0.00085 17.4 1.3 11 160-170 2-12 (26)
92 KOG4242 Predicted myosin-I-bin 26.8 76 0.0016 29.8 3.4 90 185-275 215-313 (553)
93 TIGR00864 PCC polycystin catio 21.9 56 0.0012 37.6 2.0 33 243-275 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-34 Score=289.17 Aligned_cols=312 Identities=31% Similarity=0.419 Sum_probs=184.7
Q ss_pred CHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCC
Q 019237 6 IDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHD 85 (344)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (344)
.++|+.||++|++.+.+|..+...|+ ...++|.|.|++|.. .++++.|+++++ .+.+.++..+..+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~ 94 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPY 94 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCC
Confidence 67899999999999988888889997 577899999999963 568999999998 667777778888888
Q ss_pred CCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 86 LRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
|+.|++++|.+.+. +|..+. .+.+|++|++++|.+.+.+|. ..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 88888888877654 555433 667777777776666655553 2355566666666655421 224455555555555
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch---------------------hhccccCCcccEEEcCCCCC
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF---------------------IWHFNLSTSIETLDLSDNNL 223 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------------~~~~~~~~~L~~L~l~~n~l 223 (344)
+++|.+....+ ..+..+++|++|++++|.+.+..+.. ...+..+++|++|++++|.+
T Consensus 171 L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 171 LGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 55555443321 24445555555555555544332210 01123334445555554444
Q ss_pred CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccch
Q 019237 224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE 303 (344)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (344)
.+ .++.. ...+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|.
T Consensus 249 ~~-~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 249 TG-PIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred cc-ccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 22 22222 22233455555555555544555555555555555555555555555555555555555555555555555
Q ss_pred HHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 304 MIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 304 ~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
.+..+++ ++++|.+.+.+|... ..+++|+.|+++
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l------~~~~~L~~L~Ls 364 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNL------GKHNNLTVLDLS 364 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHH------hCCCCCcEEECC
Confidence 5554444 555555555554322 245666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.8e-27 Score=241.45 Aligned_cols=243 Identities=31% Similarity=0.417 Sum_probs=162.1
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS 150 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~ 150 (344)
.+.+.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..+..+.+|++|++++|.+.. ..
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~ 228 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EI 228 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cC
Confidence 66677777788888888888888877665 67777778888888888777777777777777788888888777763 22
Q ss_pred hhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcc
Q 019237 151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP 230 (344)
Q Consensus 151 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 230 (344)
+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+ .++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~-~~p- 301 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLSDNSLSG-EIP- 301 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccC--hhHhCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECcCCeecc-CCC-
Confidence 3556777777777777777665432 4566777777777777776654332 23344667777777776643 333
Q ss_pred hhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 231 WLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 231 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
.....+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+..
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 33334456777777777766666666666667777777777666666666666666777777666666666666555433
Q ss_pred ----cccccccccccc
Q 019237 311 ----GCTMNSLEGVLE 322 (344)
Q Consensus 311 ----~l~~n~l~~~~~ 322 (344)
++++|++.+.+|
T Consensus 382 L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 382 LFKLILFSNSLEGEIP 397 (968)
T ss_pred CCEEECcCCEecccCC
Confidence 455555555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.4e-26 Score=205.41 Aligned_cols=271 Identities=23% Similarity=0.275 Sum_probs=159.1
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
+|++.|+|.+| .+...-...+..++.|+.|||+.|.|... -...+.+-.++++|+|++|.+...-...|..
T Consensus 125 ghl~~L~L~~N--------~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 125 GHLEKLDLRHN--------LISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred cceeEEeeecc--------ccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCceEEeeccccccccccccccc
Confidence 56667777666 44444445566666777777777766664 3334444566777777777777666666666
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+.+|-+|.|++|.+++.+. ..+..+++|+.|+|..|++..... ..+..+++|+.|.+.+|.+....+. .|..+.
T Consensus 196 lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~ 269 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRNDISKLDDG---AFYGLE 269 (873)
T ss_pred cchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhhcCcccccCc---ceeeec
Confidence 7777777777777776665 455667777777777776655422 2455566666666666655544332 344445
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
++++|++..|++ ..+-..+...+..|++|++|+|.|....++..+.+++|+.|+|+.|+++...+..|..+..|+.|+
T Consensus 270 kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 270 KMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ccceeecccchh--hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 666666666666 233333444444566666666666655556666666666666666666644445555566666666
Q ss_pred CCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEe
Q 019237 292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI 342 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l 342 (344)
|++|.++......|-.+.+ +|++|.+++.++-... ....|++|+.|++
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~---~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV---AFNGLPSLRKLRL 399 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh---hhccchhhhheee
Confidence 6666665443333444443 6666666666553222 2222555555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.5e-25 Score=196.26 Aligned_cols=284 Identities=20% Similarity=0.228 Sum_probs=195.4
Q ss_pred CCCCCccccceEEcCC--------------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCC
Q 019237 35 DKRDCCKWRGVRCSNK--------------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSP 100 (344)
Q Consensus 35 ~~~~~c~~~~~~c~~~--------------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 100 (344)
+++-.|.-.-..|+.. ....+.||+++| .+...-+..|.++++|+++++..|.++.
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN--------kl~~id~~~f~nl~nLq~v~l~~N~Lt~-- 116 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN--------KLSHIDFEFFYNLPNLQEVNLNKNELTR-- 116 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeecccc--------ccccCcHHHHhcCCcceeeeeccchhhh--
Confidence 3444566666666421 134567888888 5555556667888888888888888766
Q ss_pred ccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC------------------------CCCCCCchhhhhc
Q 019237 101 VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS------------------------NLFSLGSLEWLSH 156 (344)
Q Consensus 101 ~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~------------------------~l~~~~~~~~l~~ 156 (344)
+|.+.+...+|++|+|.+|.+...-.+++..++.|+.||||.| .+++... ..+..
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~ 195 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDS 195 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccc
Confidence 6666555566777777666665554444444444555555544 4444333 33444
Q ss_pred CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237 157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236 (344)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 236 (344)
+.+|.+|.|+.|.++..+. ..+..+++|+.|+|.+|.+..... ..|.++.+|+.|.+..|.+ ..+....+..+
T Consensus 196 lnsL~tlkLsrNrittLp~--r~Fk~L~~L~~LdLnrN~irive~---ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l 268 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQ--RSFKRLPKLESLDLNRNRIRIVEG---LTFQGLPSLQNLKLQRNDI--SKLDDGAFYGL 268 (873)
T ss_pred cchheeeecccCcccccCH--HHhhhcchhhhhhccccceeeehh---hhhcCchhhhhhhhhhcCc--ccccCcceeee
Confidence 5555555555555555543 455556666666666666544322 2456667777777777777 44555667777
Q ss_pred CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cc
Q 019237 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GC 312 (344)
Q Consensus 237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l 312 (344)
.++++|+|+.|+++..-..++-++..|+.|+++.|.+...-++.+.-+++|+.|+|+.|.++..-++.|..+.. +|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 88999999999998777788889999999999999999777888888899999999999999777777776666 99
Q ss_pred cccccccccccccccccccccCCCCcceEe
Q 019237 313 TMNSLEGVLEIIKSHRAGRKSMRPLDWIAI 342 (344)
Q Consensus 313 ~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l 342 (344)
++|++...-...+. .+++|+.|||
T Consensus 349 s~Nsi~~l~e~af~------~lssL~~LdL 372 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFV------GLSSLHKLDL 372 (873)
T ss_pred cccchHHHHhhHHH------HhhhhhhhcC
Confidence 99999988877766 5556666655
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.6e-23 Score=189.06 Aligned_cols=216 Identities=26% Similarity=0.350 Sum_probs=123.5
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237 83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH 162 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~ 162 (344)
++.|+.++++.|.+...++|..+.++..|+.|+||+|++. +.|..+..-.++-.|+||+|+|.+++. ..+.+++-|-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn-~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN-SLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-hHHHhhHhHhh
Confidence 3333333444444444445566666666666666655543 455556556666666666666666654 44555666666
Q ss_pred EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEE
Q 019237 163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL 242 (344)
Q Consensus 163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 242 (344)
|+|++|++...++ .+..+.+|++|.+++|.+.-.- +..+..+++|+.|.+++.+-+-..+|+.+-.. .+|..+
T Consensus 155 LDLS~NrLe~LPP---Q~RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dv 227 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPP---QIRRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDV 227 (1255)
T ss_pred hccccchhhhcCH---HHHHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhc
Confidence 6666666665543 4556666666666666543221 11222235556666665544333445444333 366666
Q ss_pred EccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 243 DLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 243 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
|+|.|.+. .+|+.+-.+++|+.|+|++|+++ ++........+|+.|++|+|.++ .+|..+|+++.
T Consensus 228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 77766666 66666666666677777777666 44444455556666666666666 55666666555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.1e-23 Score=190.08 Aligned_cols=221 Identities=27% Similarity=0.323 Sum_probs=147.8
Q ss_pred ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237 75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL 154 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l 154 (344)
-+|+.+..+..|++|||++|.+.. +|..+..-+++-.|+||+|++.++....+.++..|-+|+||+|.+...+ ..+
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP--PQ~ 169 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP--PQI 169 (1255)
T ss_pred CCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC--HHH
Confidence 488889999999999999999987 7888888889999999988877665566678888889999999888776 667
Q ss_pred hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC--CCCCchhhccccCCcccEEEcCCCCCCCCCCcchh
Q 019237 155 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP--PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL 232 (344)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 232 (344)
..+..|++|.|++|.+....- ..+.++..|++|++++.+.+ ..+. .+..+.+|..+|++.|.++ .+|. .
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Pt----sld~l~NL~dvDlS~N~Lp--~vPe-c 240 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPT----SLDDLHNLRDVDLSENNLP--IVPE-C 240 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHH--hcCccchhhhhhhcccccchhhcCCC----chhhhhhhhhccccccCCC--cchH-H
Confidence 788888888888887765421 33455666777777765433 2222 2333466666777777662 2333 3
Q ss_pred hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCcc-ccchHHhhccC
Q 019237 233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG-ELSEMIQNLSG 310 (344)
Q Consensus 233 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 310 (344)
....++|+.|+||+|+|+ .+........+|++|+++.|+++ .+|.+++++++|+.|.+.+|+++- -+|+.++++-.
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 333346667777777666 33333344455666666666666 566666666666666666665542 24555554444
No 7
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.7e-17 Score=158.88 Aligned_cols=222 Identities=20% Similarity=0.281 Sum_probs=125.9
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
.|+.|++++|.++. +|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+...+ ..+ .++|++|+
T Consensus 200 ~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP--~~l--~s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELP--ERL--PSALQSLD 268 (754)
T ss_pred CCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCC--hhH--hCCCCEEE
Confidence 45555555555543 333322 35555565555443 3343322 34566666666555443 222 23566666
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 244 (344)
+++|.+...+. .+ .++|+.|++++|.+...+..+ ..+|+.|++++|.+. .++..+ .++|+.|++
T Consensus 269 Ls~N~L~~LP~---~l--~~sL~~L~Ls~N~Lt~LP~~l------p~sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~L 332 (754)
T PRK15370 269 LFHNKISCLPE---NL--PEELRYLSVYDNSIRTLPAHL------PSGITHLNVQSNSLT--ALPETL---PPGLKTLEA 332 (754)
T ss_pred CcCCccCcccc---cc--CCCCcEEECCCCccccCcccc------hhhHHHHHhcCCccc--cCCccc---cccceeccc
Confidence 66666554332 11 135666666666665543311 135666666666662 233222 247888888
Q ss_pred cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHh-hccC-cccccccccccc
Q 019237 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLEGVLE 322 (344)
Q Consensus 245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~~~~~ 322 (344)
++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+|++|.++ .+|..+. .+.. ++++|++.+...
T Consensus 333 s~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 333 GENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPAALQIMQASRNNLVRLPE 405 (754)
T ss_pred cCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcccCch
Confidence 888887 4665553 68999999999887 5666553 68999999999988 4565443 3333 888898874322
Q ss_pred cccccccccccCCCCcceEec
Q 019237 323 IIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 323 ~~~~~~~~~~~l~~L~~l~l~ 343 (344)
.... -...++.+..+++.
T Consensus 406 sl~~---~~~~~~~l~~L~L~ 423 (754)
T PRK15370 406 SLPH---FRGEGPQPTRIIVE 423 (754)
T ss_pred hHHH---HhhcCCCccEEEee
Confidence 2211 22234556666654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3.9e-17 Score=167.31 Aligned_cols=220 Identities=22% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237 83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH 162 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~ 162 (344)
+.+|+.|++.++.+.. ++..+..+++|+.|+++++...+.+|. +..+++|++|++++|... ...+..+..+++|++
T Consensus 610 ~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence 4455555555555543 444445555556666555544444442 445555555555554322 111234555555555
Q ss_pred EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCc-------------
Q 019237 163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVY------------- 229 (344)
Q Consensus 163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------- 229 (344)
|++++|......+ .. ..+++|+.|++++|......+. ...+|+.|++++|.+. .++
T Consensus 686 L~L~~c~~L~~Lp--~~-i~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~i~--~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 686 LDMSRCENLEILP--TG-INLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETAIE--EFPSNLRLENLDELIL 754 (1153)
T ss_pred EeCCCCCCcCccC--Cc-CCCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCccc--cccccccccccccccc
Confidence 5555543222211 01 1344555555554432211110 0123344444444321 111
Q ss_pred ----------------chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237 230 ----------------PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293 (344)
Q Consensus 230 ----------------~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 293 (344)
+.....+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|+++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 1111223467777777776665677777777777777777775444556544 45666666666
Q ss_pred CCcCccccchHHhhccC-cccccccc
Q 019237 294 HNKLSGELSEMIQNLSG-GCTMNSLE 318 (344)
Q Consensus 294 ~n~l~~~~~~~~~~l~~-~l~~n~l~ 318 (344)
+|.....+|....++.. ++++|.+.
T Consensus 834 ~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 834 GCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred CCCccccccccccccCEeECCCCCCc
Confidence 66443344433333333 45555444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=9.5e-21 Score=162.87 Aligned_cols=238 Identities=29% Similarity=0.349 Sum_probs=151.2
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
.++++++..+ .+. .+|++++.+..++.++.++|.+.. +|+.++.+..|.+++.++|.+. .+|+.++.+
T Consensus 69 ~l~vl~~~~n--------~l~-~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~ 136 (565)
T KOG0472|consen 69 CLTVLNVHDN--------KLS-QLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-ELPDSIGRL 136 (565)
T ss_pred ceeEEEeccc--------hhh-hCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence 4555666555 333 466667777777777777777655 6666777777777777766554 455566667
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS 212 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 212 (344)
..|+.++..+|++++.+ ..+..+.+|..+++.+|.+...++ ....++.|++|+...|.+...+++ ++.+.+
T Consensus 137 ~~l~dl~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~~l~~---~~i~m~~L~~ld~~~N~L~tlP~~----lg~l~~ 207 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLP--EDMVNLSKLSKLDLEGNKLKALPE---NHIAMKRLKHLDCNSNLLETLPPE----LGGLES 207 (565)
T ss_pred hhhhhhhccccccccCc--hHHHHHHHHHHhhccccchhhCCH---HHHHHHHHHhcccchhhhhcCChh----hcchhh
Confidence 77777777777776555 556666667777777776666543 333367777777777776666653 344466
Q ss_pred ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchH-hhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
|+.|++..|++ ...|.+ ..+..|++++++.|+++ .+|. ..++++++..||+.+|+++ +.|..++-+.+|..||
T Consensus 208 L~~LyL~~Nki---~~lPef-~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 208 LELLYLRRNKI---RFLPEF-PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred hHHHHhhhccc---ccCCCC-CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 77777777776 222332 33446777777777776 4443 3346777777777777777 6777777777777777
Q ss_pred CCCCcCccccchHHhhc--cC-cccccccc
Q 019237 292 LPHNKLSGELSEMIQNL--SG-GCTMNSLE 318 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l--~~-~l~~n~l~ 318 (344)
+|+|.++ ..|..++++ .. .+-||++.
T Consensus 282 lSNN~is-~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred ccCCccc-cCCcccccceeeehhhcCCchH
Confidence 7777777 455555554 11 55666653
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=9.4e-17 Score=154.46 Aligned_cols=201 Identities=26% Similarity=0.275 Sum_probs=91.7
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++. +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++..+. .+++|++|
T Consensus 242 ~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~L 307 (788)
T PRK15387 242 PELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV-----LPPGLQEL 307 (788)
T ss_pred CCCcEEEecCCccCc--ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccc-----ccccccee
Confidence 345555555555443 2221 234455555544433 12221 1345556666665554432 23567777
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchh-----------
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL----------- 232 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----------- 232 (344)
++++|.+...+.++ ..|+.|++.+|.+...+. ...+|++|++++|.+. .++...
T Consensus 308 dLS~N~L~~Lp~lp------~~L~~L~Ls~N~L~~LP~-------lp~~Lq~LdLS~N~Ls--~LP~lp~~L~~L~Ls~N 372 (788)
T PRK15387 308 SVSDNQLASLPALP------SELCKLWAYNNQLTSLPT-------LPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNN 372 (788)
T ss_pred ECCCCccccCCCCc------ccccccccccCccccccc-------cccccceEecCCCccC--CCCCCCcccceehhhcc
Confidence 77777666543211 123334444444333221 0134555555555552 222100
Q ss_pred -----hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237 233 -----FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307 (344)
Q Consensus 233 -----~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 307 (344)
.....+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|.++ .+|..++.
T Consensus 373 ~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 373 RLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred ccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhh
Confidence 001124555555555554 23322 134555555555555 344321 24555666666655 45555555
Q ss_pred ccC----cccccccccccc
Q 019237 308 LSG----GCTMNSLEGVLE 322 (344)
Q Consensus 308 l~~----~l~~n~l~~~~~ 322 (344)
+.. ++++|+|++..+
T Consensus 444 L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccCCCeEECCCCCCCchHH
Confidence 544 666666665544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.6e-20 Score=160.17 Aligned_cols=243 Identities=26% Similarity=0.333 Sum_probs=189.5
Q ss_pred EEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC
Q 019237 54 VKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133 (344)
Q Consensus 54 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 133 (344)
+..+.++.| .+. .+.+.+.++..+.++++.+|.+.. .|+.++++..++.++.++|++. ++|+.+..+.
T Consensus 47 l~~lils~N--------~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 47 LQKLILSHN--------DLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred hhhhhhccC--------chh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 456677777 443 455567888888899998888876 7888888888888888877654 6778888888
Q ss_pred CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213 (344)
Q Consensus 134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 213 (344)
+|..+++++|.+.+.+ +.+..+..|..++..+|++...+. .+..+.++..+.+.+|.+...++.... ++.|
T Consensus 115 ~l~~l~~s~n~~~el~--~~i~~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~~l~~~~i~----m~~L 185 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELP--DSIGRLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLKALPENHIA----MKRL 185 (565)
T ss_pred hhhhhhccccceeecC--chHHHHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchhhCCHHHHH----HHHH
Confidence 8888999888888666 667888888888888888877764 677777888888888888877764322 4788
Q ss_pred cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccc-cCCCCCCEEeC
Q 019237 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFF-GNMCSLNRLFL 292 (344)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L 292 (344)
+++|...|.+ .++|+.+... .+|+-|++..|++. .+| .|..|+.|++|+++.|++. .+|... +.+++|..|||
T Consensus 186 ~~ld~~~N~L--~tlP~~lg~l-~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 186 KHLDCNSNLL--ETLPPELGGL-ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred Hhcccchhhh--hcCChhhcch-hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 8888888888 4667665544 47888888888888 777 7788888889999888887 566654 47888899999
Q ss_pred CCCcCccccchHHhhccC----cccccccccccccc
Q 019237 293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEII 324 (344)
Q Consensus 293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~ 324 (344)
.+|+++ .+|+.+|-+++ |+|+|.|++..+..
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence 999888 77888888776 88989888766643
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.2e-18 Score=155.31 Aligned_cols=225 Identities=24% Similarity=0.220 Sum_probs=100.5
Q ss_pred cchhhhcCCCCCEEeCCCCCCCC--C---CccccccCCCCCcEEEccCCcCCCcCCcccccCCC---CcEEEccCCCCCC
Q 019237 76 ISPALLKLHDLRHLDLSNNHFGG--S---PVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG---LVYLRLENSNLFS 147 (344)
Q Consensus 76 ~~~~~~~l~~L~~L~l~~~~~~~--~---~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~---L~~L~ls~~~l~~ 147 (344)
++..+...+.+++++++++.+.. . .++..+..+++|++|++++|.+....+..+..+.. |++|++++|.+..
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 44445555556666666555441 0 02233444556666666655555444433333333 6666666655542
Q ss_pred CCch---hhhhcC-CCCCEEEccccccCCC--CchHHHHhhcccCcEEEecCCCCCCCCC-chhhccccCCcccEEEcCC
Q 019237 148 LGSL---EWLSHL-SSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDLSD 220 (344)
Q Consensus 148 ~~~~---~~l~~~-~~L~~L~l~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~ 220 (344)
.... ..+..+ ++|++|++++|.+... ..+...+..+.+|++|++++|.+.+... .....+...++|++|++++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 1111 123334 5556666666655532 1122334444556666665555543211 0011122224555666655
Q ss_pred CCCCCCCC--cchhhhccCCccEEEccCCcCcCCchHhhh-c----CCCCCEEEccCCccCC----CccccccCCCCCCE
Q 019237 221 NNLPSSSV--YPWLFNLSRNILVLDLAFNSLRGSIPEAFQ-H----MVSLKSLHLTDNELEG----GIPKFFGNMCSLNR 289 (344)
Q Consensus 221 n~l~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~----~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~ 289 (344)
|.+.+... ........++|++|++++|.+++.....+. . .+.|++|++++|.+++ .+...+..+++|+.
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 55532100 011122233555666665555532221111 1 2455556665555542 12223334455556
Q ss_pred EeCCCCcCccc
Q 019237 290 LFLPHNKLSGE 300 (344)
Q Consensus 290 L~L~~n~l~~~ 300 (344)
+++++|.++..
T Consensus 283 l~l~~N~l~~~ 293 (319)
T cd00116 283 LDLRGNKFGEE 293 (319)
T ss_pred EECCCCCCcHH
Confidence 66665555533
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=9.9e-17 Score=154.29 Aligned_cols=214 Identities=23% Similarity=0.241 Sum_probs=142.4
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
+.++.|++++| .++ .+|.. .++|+.|++++|.+.. ++.. ..+|+.|++++|.+.. +|. .
T Consensus 242 ~~Lk~LdLs~N--------~Lt-sLP~l---p~sL~~L~Ls~N~L~~--Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~ 300 (788)
T PRK15387 242 PELRTLEVSGN--------QLT-SLPVL---PPGLLELSIFSNPLTH--LPAL---PSGLCKLWIFGNQLTS-LPV---L 300 (788)
T ss_pred CCCcEEEecCC--------ccC-cccCc---ccccceeeccCCchhh--hhhc---hhhcCEEECcCCcccc-ccc---c
Confidence 45677777777 444 23432 3578889999988765 4443 3567788888776653 443 2
Q ss_pred CCCCcEEEccCCCCCCCCch-hhh----------h---c-CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCC
Q 019237 132 LSGLVYLRLENSNLFSLGSL-EWL----------S---H-LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~-~~l----------~---~-~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 196 (344)
.++|++|++++|.+...+.. ..+ . . ..+|++|++++|.+...+.. ..+|+.|++++|.+
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L 374 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL 374 (788)
T ss_pred ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC------Ccccceehhhcccc
Confidence 36788888888877765421 000 0 0 12455555555555443321 13445555555555
Q ss_pred CCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG 276 (344)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 276 (344)
...+. ...+|+.|++++|.+. .++. ..++|+.|++++|.++ .+|..+ .+|+.|++++|+++ .
T Consensus 375 ~~LP~-------l~~~L~~LdLs~N~Lt--~LP~----l~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~ 436 (788)
T PRK15387 375 TSLPA-------LPSGLKELIVSGNRLT--SLPV----LPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-R 436 (788)
T ss_pred ccCcc-------cccccceEEecCCccc--CCCC----cccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-c
Confidence 44322 1257889999999883 3333 2347999999999998 566543 46888999999998 7
Q ss_pred ccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 277 IPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 277 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
+|..+.++++|+.|+|++|.+++..+..+..+.+
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred cChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 8998999999999999999999999888877655
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=5.7e-16 Score=158.81 Aligned_cols=236 Identities=23% Similarity=0.233 Sum_probs=146.7
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
.++.|+++++ .+. .++..+..+++|+.|+++++..... +| .+..+++|+.|++++|.....+|..+.++
T Consensus 612 ~L~~L~L~~s--------~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGS--------KLE-KLWDGVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCc--------ccc-ccccccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence 4555555554 333 4566677888899999988754332 44 46778888899998888888888888888
Q ss_pred CCCcEEEccCCC-CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch--------
Q 019237 133 SGLVYLRLENSN-LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF-------- 203 (344)
Q Consensus 133 ~~L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------- 203 (344)
.+|++|++++|. +...+. .+ .+++|++|++++|......+ ....+|+.|++.+|.+...+...
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~--~i-~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT--GI-NLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDETAIEEFPSNLRLENLDEL 752 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC--cC-CCCCCCEEeCCCCCCccccc-----cccCCcCeeecCCCccccccccccccccccc
Confidence 888888888874 333332 12 56778888877775332211 12345666666666554433210
Q ss_pred ------------------hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237 204 ------------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265 (344)
Q Consensus 204 ------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 265 (344)
......+++|+.|++++|.... .++.. ...+++|+.|++++|...+.+|..+ .+++|+.
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 0001123567788888776533 44444 3445678888888875444666554 5677778
Q ss_pred EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccc
Q 019237 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTM 314 (344)
Q Consensus 266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~ 314 (344)
|++++|.....+|.. ..+|+.|+|++|.++ .+|..+..++. ++++
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 888777544344442 246777777777776 56666666555 5555
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.1e-17 Score=148.99 Aligned_cols=264 Identities=22% Similarity=0.212 Sum_probs=175.0
Q ss_pred ccchhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCC------cCCcccccCCCCcEEEccCCCC
Q 019237 75 TISPALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLL------KVPRPFQYLSGLVYLRLENSNL 145 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~------~~~~~~~~l~~L~~L~ls~~~l 145 (344)
.....+..+..|++|+++++.++... ++..+...+++++++++++.+.. .++..+..+++|++|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34455667777999999999885431 44556677889999999877652 2334556788999999999988
Q ss_pred CCCCchhhhhcCC---CCCEEEccccccCCC--CchHHHHhhc-ccCcEEEecCCCCCCCCC-chhhccccCCcccEEEc
Q 019237 146 FSLGSLEWLSHLS---SLRHLDLSYINLTKS--SDWFQVVAKL-RSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDL 218 (344)
Q Consensus 146 ~~~~~~~~l~~~~---~L~~L~l~~~~~~~~--~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l 218 (344)
..... ..+..+. +|++|++++|.+... ..+...+..+ ++|++|++++|.++.... .+...+..+.+|++|++
T Consensus 94 ~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 94 GPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred ChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 74322 3344444 499999999987743 1222455666 899999999999875322 11223445578999999
Q ss_pred CCCCCCCCCCcchhh---hccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCcccccc-----CCCC
Q 019237 219 SDNNLPSSSVYPWLF---NLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFG-----NMCS 286 (344)
Q Consensus 219 ~~n~l~~~~~~~~~~---~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~ 286 (344)
++|.+.+ .....+. ...++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.
T Consensus 173 ~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 173 ANNGIGD-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred cCCCCch-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 9998864 2222222 2334899999999998753 345567788999999999998852222221 2479
Q ss_pred CCEEeCCCCcCccc----cchHHhhccC----cccccccccccccccccccccccC-CCCcceEe
Q 019237 287 LNRLFLPHNKLSGE----LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM-RPLDWIAI 342 (344)
Q Consensus 287 L~~L~L~~n~l~~~----~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l-~~L~~l~l 342 (344)
|+.|++++|.+++. +++.+...+. ++++|.++..-. ........+. ++|+.+++
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~--~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA--QLLAESLLEPGNELESLWV 314 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH--HHHHHHHhhcCCchhhccc
Confidence 99999999998732 2334443333 899999876532 2222233344 56666654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1e-16 Score=154.82 Aligned_cols=222 Identities=21% Similarity=0.325 Sum_probs=150.0
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++.|++++| .++ .+|..+. ++|++|++++|.++. +|..+. ++|+.|++++|.+. .+|..+.
T Consensus 199 ~~L~~L~Ls~N--------~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~- 261 (754)
T PRK15370 199 EQITTLILDNN--------ELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP- 261 (754)
T ss_pred cCCcEEEecCC--------CCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh-
Confidence 35777777777 455 3555443 489999999999875 665443 57999999988876 5666554
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
.+|++|++++|.+...+. .+ .++|++|++++|.+...+. .+ .+.|+.|++++|.+...+.. ..+
T Consensus 262 -s~L~~L~Ls~N~L~~LP~--~l--~~sL~~L~Ls~N~Lt~LP~---~l--p~sL~~L~Ls~N~Lt~LP~~------l~~ 325 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPE--NL--PEELRYLSVYDNSIRTLPA---HL--PSGITHLNVQSNSLTALPET------LPP 325 (754)
T ss_pred -CCCCEEECcCCccCcccc--cc--CCCCcEEECCCCccccCcc---cc--hhhHHHHHhcCCccccCCcc------ccc
Confidence 579999999998886552 22 2589999999998876543 11 13677788888887765432 125
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+|+.|++++|.++ .++..+ +++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|+
T Consensus 326 sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 326 GLKTLEAGENALT--SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred cceeccccCCccc--cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 7888888888773 344333 247888888888877 5665553 57888888888877 5565543 3677788
Q ss_pred CCCCcCccccchHHhhc----cC----cccccccc
Q 019237 292 LPHNKLSGELSEMIQNL----SG----GCTMNSLE 318 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l----~~----~l~~n~l~ 318 (344)
+++|.++ .+|..+..+ +. ++.+|+++
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888777 445444332 22 56666653
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=3.7e-18 Score=146.74 Aligned_cols=247 Identities=25% Similarity=0.229 Sum_probs=165.7
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccC-CcCCCcCCcccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQ 130 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~ 130 (344)
...+.|.|..| .++...+.+|+.++.|+.|||++|.|+.+ -|..|..++.|..|-+.+ |++.......|.
T Consensus 67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 56777888887 67777777889999999999999998886 778888888888877776 555555556778
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC----------
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN---------- 200 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------- 200 (344)
++..|+.|.+.-|.+.-... ..+..+++|..|.+..|.+..... ..+..+..++.+++..|.+...-
T Consensus 138 gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHh
Confidence 88888888888877774443 778888899888888888766643 35666777777777766521110
Q ss_pred --Cchhhccc-------------------cCCcccEE--EcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237 201 --PSFIWHFN-------------------LSTSIETL--DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257 (344)
Q Consensus 201 --~~~~~~~~-------------------~~~~L~~L--~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 257 (344)
+.....+. ....++.+ .++.....+...|...++.+++|++|++++|++++.-+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 00000000 00112222 12222222234555566667778888888888876667777
Q ss_pred hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
.....+++|.|..|++...--..|.++..|+.|+|.+|.++...|..|..+.+
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 77777777888777776444456777777777888888777666666665544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4.7e-18 Score=159.99 Aligned_cols=206 Identities=27% Similarity=0.303 Sum_probs=147.1
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
...+|++++++.+.+.. +|++++.+.+|+.+...+|++ ..+|..+....+|+.|.+.+|.+...+ ........|+
T Consensus 239 ~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip--~~le~~~sL~ 313 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIP--PFLEGLKSLR 313 (1081)
T ss_pred ccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCC--Ccccccceee
Confidence 34578888888888876 668888888888888887776 566666666677777777777766554 4455667777
Q ss_pred EEEccccccCCCCchHH-----------------------HHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEc
Q 019237 162 HLDLSYINLTKSSDWFQ-----------------------VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDL 218 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~-----------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 218 (344)
+|+|..|.+...++... .-..++.|+.|++.+|.+++... ..+.+...|+.|++
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~---p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF---PVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch---hhhccccceeeeee
Confidence 77777777665533110 11223466777777777766442 24555678888888
Q ss_pred CCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237 219 SDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 219 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
++|++ ..++......++.|++|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++
T Consensus 391 syNrL--~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 391 SYNRL--NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred ccccc--ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 88888 4577777777777888888888888 77788888888888888888877 666 5777888888888888887
Q ss_pred cc
Q 019237 299 GE 300 (344)
Q Consensus 299 ~~ 300 (344)
..
T Consensus 466 ~~ 467 (1081)
T KOG0618|consen 466 EV 467 (1081)
T ss_pred hh
Confidence 44
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=3e-17 Score=154.59 Aligned_cols=224 Identities=25% Similarity=0.291 Sum_probs=171.6
Q ss_pred CCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccc
Q 019237 50 KTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF 129 (344)
Q Consensus 50 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 129 (344)
....++.+|++.+ .+. .+|..++.+.+|+.++..+|.++. ++..+....+|+.|.+..|.+. .+|...
T Consensus 239 ~p~nl~~~dis~n--------~l~-~lp~wi~~~~nle~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~-yip~~l 306 (1081)
T KOG0618|consen 239 VPLNLQYLDISHN--------NLS-NLPEWIGACANLEALNANHNRLVA--LPLRISRITSLVSLSAAYNELE-YIPPFL 306 (1081)
T ss_pred ccccceeeecchh--------hhh-cchHHHHhcccceEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence 4456777777776 555 467888999999999999999965 7788888888888888866654 455556
Q ss_pred ccCCCCcEEEccCCCCCCCCchhhhh-------------------------cCCCCCEEEccccccCCCCchHHHHhhcc
Q 019237 130 QYLSGLVYLRLENSNLFSLGSLEWLS-------------------------HLSSLRHLDLSYINLTKSSDWFQVVAKLR 184 (344)
Q Consensus 130 ~~l~~L~~L~ls~~~l~~~~~~~~l~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 184 (344)
..+..|++|+|..|.+...+. ..+. .++.|+.|.+.+|.+.+.- +..+..++
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~ 383 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFK 383 (1081)
T ss_pred cccceeeeeeehhccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhcccc
Confidence 667888888888888776553 1111 1245667777777777653 24788999
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
+|+.|+|++|.+...+.. .+..+..|++|+++||.+ .+++..+. .+..|+.|...+|.+. .+| .+..++.|+
T Consensus 384 hLKVLhLsyNrL~~fpas---~~~kle~LeeL~LSGNkL--~~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPAS---KLRKLEELEELNLSGNKL--TTLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred ceeeeeecccccccCCHH---HHhchHHhHHHhcccchh--hhhhHHHH-hhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 999999999999988753 456668999999999999 45665444 4458999999999998 888 778899999
Q ss_pred EEEccCCccCC-CccccccCCCCCCEEeCCCCcC
Q 019237 265 SLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKL 297 (344)
Q Consensus 265 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l 297 (344)
.+|++.|.++. .+|.... .++|++||+++|.-
T Consensus 456 ~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 99999999885 3344333 38999999999973
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=5.2e-16 Score=133.64 Aligned_cols=235 Identities=25% Similarity=0.294 Sum_probs=175.9
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccC-CCCCCCCchhhhhcCCCCCEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN-SNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~l~~~~~L~~L 163 (344)
....+.|..|.|+.. -+..|+.+++|+.|+|++|.+..+.|.+|.++.+|-.|.+.+ |.|+..+. ..+..+..|+.|
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHH
Confidence 567899999999986 667899999999999999999999999999999887766665 89997775 788999999999
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcch------------
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW------------ 231 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------ 231 (344)
.+.-|.+.-... +.+..++++..|.+..|.+...... .+..+.+++.+.+..|.+...--.++
T Consensus 146 llNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 146 LLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred hcChhhhcchhH--HHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 999888876643 6889999999999999987765532 34444666666666655210000000
Q ss_pred --------------------hhhccCCccEE--Ecc-CCcCcCC-chHhhhcCCCCCEEEccCCccCCCccccccCCCCC
Q 019237 232 --------------------LFNLSRNILVL--DLA-FNSLRGS-IPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287 (344)
Q Consensus 232 --------------------~~~~~~~L~~L--~ls-~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 287 (344)
..+....++.+ .++ .+...+. ....|+.+++|++|++++|+++..-+.+|.+...+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 00001122222 111 1222222 23578999999999999999998778899999999
Q ss_pred CEEeCCCCcCccccchHHhhccC----cccccccccccccccc
Q 019237 288 NRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKS 326 (344)
Q Consensus 288 ~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~ 326 (344)
++|.|..|++...-...|.++.. .+.+|+|+..-|+.++
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 99999999998665566666655 8999999998888776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1e-16 Score=123.04 Aligned_cols=184 Identities=25% Similarity=0.308 Sum_probs=115.0
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 186 (344)
.+.+++.|.+++|.+. .+|..+..+.+|+.|++++|.+++.+ ..++.+++|++|+++-|++...+ ..+++++.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lp---rgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILP---RGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCc---cccCCCchh
Confidence 3556666777766554 45566777778888888888877666 56777888888888777766554 367777788
Q ss_pred cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266 (344)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 266 (344)
+.|++.+|.+.+..- ...|-.++.|+.|.++.|.+ .-+++.+.+. .+|+.|.+..|.+. .+|..++.+..|++|
T Consensus 105 evldltynnl~e~~l--pgnff~m~tlralyl~dndf--e~lp~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSL--PGNFFYMTTLRALYLGDNDF--EILPPDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhccccccccccC--CcchhHHHHHHHHHhcCCCc--ccCChhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 888887777654321 12233346666777777766 3444554443 36777777766666 666666667777777
Q ss_pred EccCCccCCCccccccCC---CCCCEEeCCCCcCccccch
Q 019237 267 HLTDNELEGGIPKFFGNM---CSLNRLFLPHNKLSGELSE 303 (344)
Q Consensus 267 ~l~~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~ 303 (344)
.+++|+++ .+|..++.+ .+=+.+.+.+|.....+.+
T Consensus 179 hiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 77777766 555544432 2223444455554444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-16 Score=122.84 Aligned_cols=178 Identities=25% Similarity=0.322 Sum_probs=149.7
Q ss_pred ccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL 209 (344)
Q Consensus 130 ~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 209 (344)
..+..+..|.+|.|.++.++ ..++.+.+|+.|++.+|++...+. .++++++|+.|++.-|.+...+. .|..
T Consensus 30 f~~s~ITrLtLSHNKl~~vp--pnia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmnrl~~lpr----gfgs 100 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVP--PNIAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNILPR----GFGS 100 (264)
T ss_pred cchhhhhhhhcccCceeecC--CcHHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchhhhhcCcc----ccCC
Confidence 35677888999999999766 678999999999999999998875 88999999999999998877654 4677
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCE
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNR 289 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 289 (344)
++.|+.||+.+|++....++..++ .+..|..|.+++|.+. .+|..++.+.+|+.|.+.+|.+. .+|..++.+..|++
T Consensus 101 ~p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred CchhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 799999999999997644554444 4458999999999999 88889999999999999999988 79999999999999
Q ss_pred EeCCCCcCccccchHHhhccC-------cccccccccc
Q 019237 290 LFLPHNKLSGELSEMIQNLSG-------GCTMNSLEGV 320 (344)
Q Consensus 290 L~L~~n~l~~~~~~~~~~l~~-------~l~~n~l~~~ 320 (344)
|.+.+|.++ .+|..++.+.- .+.+|.+...
T Consensus 178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 999999999 77777776533 5666766443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=133.17 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=121.1
Q ss_pred cCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCc-----cccceEEcCC--C--CcEEEEEcCCCCcccccCcccc
Q 019237 3 MRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCC-----KWRGVRCSNK--T--GHVKVLNLRRSDDENARGKVLK 73 (344)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c-----~~~~~~c~~~--~--~~l~~l~l~~~~~~~~~~~~~~ 73 (344)
.++.+.|++||++++.++.++.. .+|.. +.| .|.|+.|... . ..++.|+|+++ .+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~ 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLR 431 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCC--------Ccc
Confidence 45678899999999999965532 37863 234 7999999532 1 25889999998 889
Q ss_pred cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhh
Q 019237 74 GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEW 153 (344)
Q Consensus 74 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~ 153 (344)
|.+|..++.+++|+.|+|++|.+.+. +|..++.+++|+.|+|++|++.+.+|..++++++|++|++++|.+.. ..+..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g-~iP~~ 509 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG-RVPAA 509 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc-cCChH
Confidence 99999999999999999999999886 88899999999999999999999999999999999999999998873 22344
Q ss_pred hhc-CCCCCEEEccccc
Q 019237 154 LSH-LSSLRHLDLSYIN 169 (344)
Q Consensus 154 l~~-~~~L~~L~l~~~~ 169 (344)
+.. ..++..+++.+|.
T Consensus 510 l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 LGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhhccccCceEEecCCc
Confidence 443 2355666666664
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=7.2e-15 Score=124.87 Aligned_cols=244 Identities=20% Similarity=0.189 Sum_probs=175.7
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCC--Ccc-------ccccCCCCCcEEEccCCcC
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGS--PVP-------EFIGSLSRLRYLNLSCGTS 121 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~-------~~l~~l~~L~~L~Ls~~~~ 121 (344)
...++.++|+||.++.-. ...+...+.+.+.|+..+++.-..... .+| +.+-.+++|++++||+|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EA----a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEA----ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHH----HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 456899999999654322 123556677788899998876432111 123 2344578999999999998
Q ss_pred CCcCCccc----ccCCCCcEEEccCCCCCCCCch------------hhhhcCCCCCEEEccccccCCCC--chHHHHhhc
Q 019237 122 LLKVPRPF----QYLSGLVYLRLENSNLFSLGSL------------EWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKL 183 (344)
Q Consensus 122 ~~~~~~~~----~~l~~L~~L~ls~~~l~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~ 183 (344)
....+..+ ..+..|++|.|.+|.+...... .....-++|+.+..++|++.... .+...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 87666555 4578999999999998754421 22345679999999999987763 345677888
Q ss_pred ccCcEEEecCCCCCCCCC-chhhccccCCcccEEEcCCCCCCC--CCCcchhhhccCCccEEEccCCcCcCCchHhh---
Q 019237 184 RSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF--- 257 (344)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~--- 257 (344)
+.|+.+.+..|.+..... -....+..+++|+.||+..|.++. ..........++.|+.|++++|.++......+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 999999999998865443 223456777999999999998842 11222334455579999999999986544433
Q ss_pred --hcCCCCCEEEccCCccCC----CccccccCCCCCCEEeCCCCcCc
Q 019237 258 --QHMVSLKSLHLTDNELEG----GIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 258 --~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
...+.|+.|.+.+|.++. .+...+...|.|..|+|++|.+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 347899999999999885 23344566899999999999993
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=4e-13 Score=114.40 Aligned_cols=239 Identities=23% Similarity=0.250 Sum_probs=166.3
Q ss_pred hhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCC----cCCccc-------ccCCCCcEEEccCC
Q 019237 78 PALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLL----KVPRPF-------QYLSGLVYLRLENS 143 (344)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~----~~~~~~-------~~l~~L~~L~ls~~ 143 (344)
+....+..++.+++++|.+.... +.+.+.+.+.|+..+++ +-+.+ .+|+.+ ..+++|++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34556778999999999986541 33455677889999998 44444 344333 35679999999999
Q ss_pred CCCCCCch---hhhhcCCCCCEEEccccccCCCCc--h---------HHHHhhcccCcEEEecCCCCCCCCCc-hhhccc
Q 019237 144 NLFSLGSL---EWLSHLSSLRHLDLSYINLTKSSD--W---------FQVVAKLRSLKTLVLRSCALPPINPS-FIWHFN 208 (344)
Q Consensus 144 ~l~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~---------~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 208 (344)
.+...... ..+.+++.|++|.|.+|.+..... + ..-..+-+.|+++...+|++...... +...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 88754442 456778999999999998876521 0 11233457899999999988765532 233455
Q ss_pred cCCcccEEEcCCCCCCCC--CCcchhhhccCCccEEEccCCcCcC----CchHhhhcCCCCCEEEccCCccCCCccccc-
Q 019237 209 LSTSIETLDLSDNNLPSS--SVYPWLFNLSRNILVLDLAFNSLRG----SIPEAFQHMVSLKSLHLTDNELEGGIPKFF- 281 (344)
Q Consensus 209 ~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l- 281 (344)
..+.|+.+.+..|.+... +.....+..++.|+.|||.+|.++. .+...++.+++|+.|++++|.+......++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 557899999999887421 2333455677899999999998874 345567778899999999998886544332
Q ss_pred ----cCCCCCCEEeCCCCcCccccch----HHhhccC----ccccccc
Q 019237 282 ----GNMCSLNRLFLPHNKLSGELSE----MIQNLSG----GCTMNSL 317 (344)
Q Consensus 282 ----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~----~l~~n~l 317 (344)
...|+|+.|.+.+|.++..... .+...+. ++++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3468999999999988744222 2222222 8888888
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.5e-13 Score=116.62 Aligned_cols=217 Identities=22% Similarity=0.242 Sum_probs=135.2
Q ss_pred cchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCC--cccccCCCCcEEEccCCCCCCCCchhh
Q 019237 76 ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP--RPFQYLSGLVYLRLENSNLFSLGSLEW 153 (344)
Q Consensus 76 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~ls~~~l~~~~~~~~ 153 (344)
+..--.+++.|+.+.+.++.+...+.......|++++.|+|+.|-+....+ .-...+++|+.|+++.|.+.-......
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 334446677788888888877654333455678888888888775543222 223467888888888887663332222
Q ss_pred hhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhh
Q 019237 154 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF 233 (344)
Q Consensus 154 l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 233 (344)
-..++.|+.|.++.|.++ ...+...+..+|+|+.|++..|...... ......++.|+.|++++|.+....-.. ..
T Consensus 193 ~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~---~~~~~i~~~L~~LdLs~N~li~~~~~~-~~ 267 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIK---ATSTKILQTLQELDLSNNNLIDFDQGY-KV 267 (505)
T ss_pred hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccccccee---cchhhhhhHHhhccccCCccccccccc-cc
Confidence 335677888888888877 4444566778888888888877411111 112233477888888888773311112 23
Q ss_pred hccCCccEEEccCCcCcC-CchHh-----hhcCCCCCEEEccCCccCCCcc--ccccCCCCCCEEeCCCCcCc
Q 019237 234 NLSRNILVLDLAFNSLRG-SIPEA-----FQHMVSLKSLHLTDNELEGGIP--KFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 234 ~~~~~L~~L~ls~n~l~~-~~~~~-----~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~ 298 (344)
..++.|+.|+++.+.+.. .+|+. ...+++|+.|++..|++.. .+ ..+..+++|+.|.+..|.++
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence 345577888888777764 22322 3456778888888888752 22 23555677777777777765
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=9.4e-13 Score=118.74 Aligned_cols=195 Identities=25% Similarity=0.321 Sum_probs=104.0
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+..-...|++-|++.. +|..+..+..|+.+.+..|.+. .+|..++++..|.+|+++.|.+...+ ..+..++ |+
T Consensus 73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~lp-Lk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLP--DGLCDLP-LK 146 (722)
T ss_pred cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCC--hhhhcCc-ce
Confidence 34445555666666654 5555555555666666555443 34555666666666666666666554 2233333 55
Q ss_pred EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237 162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 241 (344)
.|-+++|++...+. .++....|.+|+.+.|.+...+. .+..+.+|+.|.+..|++ ..+++.+. .+ .|..
T Consensus 147 vli~sNNkl~~lp~---~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l--~~lp~El~-~L-pLi~ 215 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPE---EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHL--EDLPEELC-SL-PLIR 215 (722)
T ss_pred eEEEecCccccCCc---ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhh--hhCCHHHh-CC-ceee
Confidence 55566665555443 34455556666666665555443 233335555666666655 34555444 22 4566
Q ss_pred EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCcccccc---CCCCCCEEeCCCC
Q 019237 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFG---NMCSLNRLFLPHN 295 (344)
Q Consensus 242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~L~~n 295 (344)
||++.|+++ .+|-.|.+++.|++|-|.+|.++ ..|..++ ...-.++|+..-|
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 666666665 56666666666666666666665 3333332 2334445555444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=9.1e-11 Score=93.53 Aligned_cols=104 Identities=36% Similarity=0.357 Sum_probs=29.9
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccc-ccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF-QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
+..|+.|++++|.++.. +.+..+++|+.|++++|.+.... ..+ ..+++|++|++++|.+........+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S-----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 34455555555555432 22334455555555544444321 112 23445555555555554444334444455555
Q ss_pred EEEccccccCCCCchH-HHHhhcccCcEEE
Q 019237 162 HLDLSYINLTKSSDWF-QVVAKLRSLKTLV 190 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~ 190 (344)
.|++.+|.+....... ..+..+|+|+.|+
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 5555555444332211 1234444444443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-11 Score=107.99 Aligned_cols=185 Identities=23% Similarity=0.245 Sum_probs=129.0
Q ss_pred CCCCCcEEEccCCcCCCcCC--cccccCCCCcEEEccCCCCCCCCc-hhhhhcCCCCCEEEccccccCCCCchHHHHhhc
Q 019237 107 SLSRLRYLNLSCGTSLLKVP--RPFQYLSGLVYLRLENSNLFSLGS-LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 183 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~ls~~~l~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 183 (344)
++.+|+.+.|.++... ..+ .....|++++.|||+.|-+..... ......+|+|+.|+++.|.+..... ...-..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence 4778888888865543 222 356678999999999987775443 3556678999999999998765532 1123467
Q ss_pred ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch--HhhhcCC
Q 019237 184 RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP--EAFQHMV 261 (344)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~ 261 (344)
+.|+.|.++.|+++.... .+....+++|+.|++.+|... .....-.+.++.|+.|||++|.+. .++ .....++
T Consensus 197 ~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 888999999998874322 334555689999999998431 222222344557899999998887 333 3456788
Q ss_pred CCCEEEccCCccCC-Ccccc-----ccCCCCCCEEeCCCCcCc
Q 019237 262 SLKSLHLTDNELEG-GIPKF-----FGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 262 ~L~~L~l~~n~~~~-~~~~~-----l~~l~~L~~L~L~~n~l~ 298 (344)
.|..|+++.|.+.+ ..|.. ....++|++|+++.|.+.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 88999999888875 23333 345689999999999885
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=8.6e-11 Score=98.55 Aligned_cols=209 Identities=22% Similarity=0.196 Sum_probs=126.5
Q ss_pred ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237 75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL 154 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l 154 (344)
.+|..+.-+++|..+.++.+.-.. +......-|.|+.+...+..... .| .+.-...+....-..-...+.+....+
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSA 280 (490)
T ss_pred ccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEec
Confidence 445555666777788887775433 22222234667777766433221 11 111111121111111111222222334
Q ss_pred hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh
Q 019237 155 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234 (344)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 234 (344)
..+..|.++|+++|.+..... +..-.|.++.|+++.|++..+.. +..+++|+.||+++|.++ .+ ..+..
T Consensus 281 dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n-----La~L~~L~~LDLS~N~Ls--~~-~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN-----LAELPQLQLLDLSGNLLA--EC-VGWHL 349 (490)
T ss_pred chHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh-----hhhcccceEeecccchhH--hh-hhhHh
Confidence 455678888888888776653 66777888888888888776443 455588888888888772 22 23333
Q ss_pred ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC-CccccccCCCCCCEEeCCCCcCccc
Q 019237 235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (344)
.+-+.+.|.++.|.+.. ...+..+-+|..||+.+|++.. .-...++++|.|+.+.|.+|.+.+.
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 34478888888888752 2345667778888999998873 1234578889999999999988754
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.4e-10 Score=92.46 Aligned_cols=103 Identities=23% Similarity=0.171 Sum_probs=29.3
Q ss_pred cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC-chHhhhcCC
Q 019237 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS-IPEAFQHMV 261 (344)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~ 261 (344)
+.+|+.|++++|.+..... +..++.|+.|++++|.+. .+...+...+++|++|++++|+|... ....+..++
T Consensus 41 l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp -TT--EEE-TTS--S--TT---------TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred hcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 3444445555444444321 233345555555555552 22222222334555555555555421 123344455
Q ss_pred CCCEEEccCCccCCCc---cccccCCCCCCEEeC
Q 019237 262 SLKSLHLTDNELEGGI---PKFFGNMCSLNRLFL 292 (344)
Q Consensus 262 ~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~L 292 (344)
+|+.|++.+|.++..- ...+..+|+|+.||-
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5555555555554210 112344555555544
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=3.4e-10 Score=103.92 Aligned_cols=197 Identities=28% Similarity=0.438 Sum_probs=138.5
Q ss_pred EEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC-CCcEEEccCCCCCCCCchhhhhcCCCCCEEEcc
Q 019237 88 HLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS-GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166 (344)
Q Consensus 88 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~ 166 (344)
.+++..+.+.. ....+..++.++.|++.++.+. .++....... +|+.|+++.|.+...+ ..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh--hhhhccccccccccC
Confidence 46666666533 2233445677888888866554 4555555553 8888888888888664 457788889999998
Q ss_pred ccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccC
Q 019237 167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF 246 (344)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~ 246 (344)
.|.+...+. .....+.|+.|++++|.+...+.. ......|+++.+++|.+ ...+..+ ....++..+.+..
T Consensus 172 ~N~l~~l~~---~~~~~~~L~~L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N~~--~~~~~~~-~~~~~l~~l~l~~ 241 (394)
T COG4886 172 FNDLSDLPK---LLSNLSNLNNLDLSGNKISDLPPE----IELLSALEELDLSNNSI--IELLSSL-SNLKNLSGLELSN 241 (394)
T ss_pred Cchhhhhhh---hhhhhhhhhheeccCCccccCchh----hhhhhhhhhhhhcCCcc--eecchhh-hhcccccccccCC
Confidence 888887753 333778888889998888877652 12335688888888853 1333333 3334777778888
Q ss_pred CcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 247 NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 247 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
|++. .++..+..+++++.|++++|+++ .++. +....+++.|++++|.+....|
T Consensus 242 n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 242 NKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 8877 44677778888999999999888 4444 7788899999999988775544
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.3e-12 Score=105.51 Aligned_cols=180 Identities=22% Similarity=0.151 Sum_probs=89.0
Q ss_pred CcEEEccCCcCCC-cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEE
Q 019237 111 LRYLNLSCGTSLL-KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189 (344)
Q Consensus 111 L~~L~Ls~~~~~~-~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 189 (344)
|++|||++..+.. .+...+..|.+|+.|.+.++.+. .++...+++..+|+.|+++.+.--......-.+.++..|.+|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 6666666433321 11122344556666666666555 333355566666666666665433332233345666666666
Q ss_pred EecCCCCCCCCCchhhccccCCcccEEEcCCCCC--CCCCCcchhhhccCCccEEEccCC-cCcCCchHhhhcCCCCCEE
Q 019237 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL--PSSSVYPWLFNLSRNILVLDLAFN-SLRGSIPEAFQHMVSLKSL 266 (344)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L 266 (344)
++++|.+...... ........+|+.|+++|+.- .. .-..-+...+++|.+|||++| .++......|-.++.|++|
T Consensus 266 NlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 6666655433211 11111124566666665522 11 122233344556666666665 3343344445556666666
Q ss_pred EccCCccCCCccc---cccCCCCCCEEeCCCC
Q 019237 267 HLTDNELEGGIPK---FFGNMCSLNRLFLPHN 295 (344)
Q Consensus 267 ~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n 295 (344)
.++.|... +|. .+...|+|.+|++-++
T Consensus 344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 66666422 222 2455566666666655
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.04 E-value=9.2e-11 Score=96.97 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=168.0
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCC--C-------ccccccCCCCCcEEEccCCcCC
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGS--P-------VPEFIGSLSRLRYLNLSCGTSL 122 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~-------~~~~l~~l~~L~~L~Ls~~~~~ 122 (344)
..++.+||+||.++.-... .+...+.+-++|+..+++.-..... . +.+.+-+||+|+..+||+|.+.
T Consensus 30 d~~~evdLSGNtigtEA~e----~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 30 DELVEVDLSGNTIGTEAME----ELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred cceeEEeccCCcccHHHHH----HHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 5688999999966543322 3445566677888888876432211 0 2234557999999999999998
Q ss_pred CcCCccc----ccCCCCcEEEccCCCCCCCCch------------hhhhcCCCCCEEEccccccCCCCc--hHHHHhhcc
Q 019237 123 LKVPRPF----QYLSGLVYLRLENSNLFSLGSL------------EWLSHLSSLRHLDLSYINLTKSSD--WFQVVAKLR 184 (344)
Q Consensus 123 ~~~~~~~----~~l~~L~~L~ls~~~l~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~~ 184 (344)
...|..+ ..-..|++|.+++|.+.....- .....-|.|+++....|++...+. ....+.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 8777655 4557899999999988754431 123345899999999999877643 234566667
Q ss_pred cCcEEEecCCCCCCCCCch--hhccccCCcccEEEcCCCCCC--CCCCcchhhhccCCccEEEccCCcCcCCchHhh---
Q 019237 185 SLKTLVLRSCALPPINPSF--IWHFNLSTSIETLDLSDNNLP--SSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF--- 257 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~--- 257 (344)
.|+++.+..|++....... ...+..+++|+.||++.|.++ ++.........++.|..|.+.+|.++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 9999999999887653221 122344589999999999884 222333344555578999999998875433322
Q ss_pred ---hcCCCCCEEEccCCccCCCcc------ccc-cCCCCCCEEeCCCCcCcc
Q 019237 258 ---QHMVSLKSLHLTDNELEGGIP------KFF-GNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 258 ---~~~~~L~~L~l~~n~~~~~~~------~~l-~~l~~L~~L~L~~n~l~~ 299 (344)
...++|..|...+|.+.+.+- ... .++|-|..|.+.+|.+..
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 346889999999998765322 111 357888899999998873
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-11 Score=103.38 Aligned_cols=187 Identities=23% Similarity=0.177 Sum_probs=134.4
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCC-CCCCCchhhhhcCCCCCEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN-LFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L 163 (344)
.|+++|++...++...+...+..+.+|+.|.+.++.+...+...++.-.+|+.|+++.|+ ++.......+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588999999988776566677889999999999999888887888888999999999875 4444443557789999999
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEE
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLD 243 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 243 (344)
++++|.......-...-.--++|..|+++++.-.-......-....+++|.+||++.|......+...+++. +.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-chheeee
Confidence 999998776532111223456899999988753221111122345678999999999865432444445444 4899999
Q ss_pred ccCCcCcCCchHh---hhcCCCCCEEEccCCccC
Q 019237 244 LAFNSLRGSIPEA---FQHMVSLKSLHLTDNELE 274 (344)
Q Consensus 244 ls~n~l~~~~~~~---~~~~~~L~~L~l~~n~~~ 274 (344)
++.|.. .+|.. +...+.|..|++.++--.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 999864 34543 456788999998877543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.4e-09 Score=104.99 Aligned_cols=110 Identities=28% Similarity=0.334 Sum_probs=93.1
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
.++.|++++|.+.+ .++..+. .+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 47889999999966 6666554 456999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccccchHHhhccC-----ccccccccccccc
Q 019237 292 LPHNKLSGELSEMIQNLSG-----GCTMNSLEGVLEI 323 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~~~~ 323 (344)
|++|.+++.+|..+..... ++.+|......|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999998876432 6777775444443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.3e-11 Score=111.48 Aligned_cols=202 Identities=25% Similarity=0.289 Sum_probs=143.2
Q ss_pred EEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccc
Q 019237 88 HLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY 167 (344)
Q Consensus 88 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~ 167 (344)
.|.|++-.+...+.+..-..+.--...+++.|++. .+|..++.+..|+.+.+..|.+...+ ..+..+..|..++++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip--~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIP--EAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecc--hhhhhhhHHHHhhhcc
Confidence 34455554444323332234555566777777765 56777777788888888888877665 6678888888888888
Q ss_pred cccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237 168 INLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247 (344)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 247 (344)
|+++..+. .+..+ -|+.|-+++|+++..+.++ +...+|..|+.+.|.+ .++++.+.... +|+.|.+..|
T Consensus 131 NqlS~lp~---~lC~l-pLkvli~sNNkl~~lp~~i----g~~~tl~~ld~s~nei--~slpsql~~l~-slr~l~vrRn 199 (722)
T KOG0532|consen 131 NQLSHLPD---GLCDL-PLKVLIVSNNKLTSLPEEI----GLLPTLAHLDVSKNEI--QSLPSQLGYLT-SLRDLNVRRN 199 (722)
T ss_pred chhhcCCh---hhhcC-cceeEEEecCccccCCccc----ccchhHHHhhhhhhhh--hhchHHhhhHH-HHHHHHHhhh
Confidence 88877653 33444 4788888888887776542 2447888888888888 45666665544 7888888888
Q ss_pred cCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307 (344)
Q Consensus 248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 307 (344)
.+. .+|..+..+ .|.+||+++|++. .+|..|..|..|++|-|.+|.+. +.|..+|.
T Consensus 200 ~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 200 HLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred hhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 888 666666655 4888888888888 78888888888888888888888 44555554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.5e-09 Score=99.79 Aligned_cols=185 Identities=31% Similarity=0.444 Sum_probs=139.8
Q ss_pred hhhhcCCCCCEEeCCCCCCCCCCccccccCCC-CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237 78 PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLS-RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSH 156 (344)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~ 156 (344)
..+..++.++.|++.++.++. ++.....+. +|+.|++++|.+.. +|..+..+++|+.|+++.|.+...+ .....
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~ 184 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLP--KLLSN 184 (394)
T ss_pred hhhhcccceeEEecCCccccc--Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhh--hhhhh
Confidence 345566789999999999987 677777674 99999999877654 4456788999999999999999766 33448
Q ss_pred CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237 157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236 (344)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 236 (344)
.++|+.|++++|.+...+. .......|+++.+++|....... .......+..+.+..|.+.. + ......+
T Consensus 185 ~~~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~--~-~~~~~~l 254 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLED--L-PESIGNL 254 (394)
T ss_pred hhhhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeee--c-cchhccc
Confidence 8999999999999988864 33456669999999995333322 34455777788888887732 2 3334455
Q ss_pred CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccc
Q 019237 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPK 279 (344)
Q Consensus 237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 279 (344)
++++.|++++|.++ .++. +....+++.|++++|.+....+.
T Consensus 255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 57999999999998 4444 78889999999999988754443
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3e-09 Score=89.30 Aligned_cols=207 Identities=17% Similarity=0.114 Sum_probs=138.7
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhh-cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL 209 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 209 (344)
....++.+.+.++.+........++ ..+.+++++|.+|.+++...+...+..+|.|+.|+++.|.+........ ..
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p 119 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LP 119 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cc
Confidence 3445667777777777665544444 4678999999999999988888888999999999999998877654321 23
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCc----------h-------------------HhhhcC
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI----------P-------------------EAFQHM 260 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~----------~-------------------~~~~~~ 260 (344)
..+|+.|.+.+..+.. +.........|.++.|+++.|.+.... + ...+-+
T Consensus 120 ~~nl~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred ccceEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 3788899998888865 333445566678888888888544200 0 011235
Q ss_pred CCCCEEEccCCccCCCc-cccccCCCCCCEEeCCCCcCccc-cchHHhhccC----cccccccccccccccccccccccC
Q 019237 261 VSLKSLHLTDNELEGGI-PKFFGNMCSLNRLFLPHNKLSGE-LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM 334 (344)
Q Consensus 261 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l 334 (344)
+++..+.+..|.+.+.- -+....+|.+..|+|+.+.+..- ..+.+.++++ ++++|++...+..-..--..+.++
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 67777777777665422 12345567777888888877632 1244555555 788888877776655555566778
Q ss_pred CCCcceE
Q 019237 335 RPLDWIA 341 (344)
Q Consensus 335 ~~L~~l~ 341 (344)
+++++|+
T Consensus 279 ~~v~vLN 285 (418)
T KOG2982|consen 279 TKVQVLN 285 (418)
T ss_pred cceEEec
Confidence 8877775
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.9e-09 Score=106.58 Aligned_cols=110 Identities=33% Similarity=0.376 Sum_probs=62.0
Q ss_pred hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCC
Q 019237 79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS 158 (344)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~ 158 (344)
.|..++.|++||+++|.-... +|..++.+-+|++|++++..+. .+|..+.++..|.+|++..+...... +.....++
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~ 642 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ 642 (889)
T ss_pred HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence 355567777777776544443 6666777777777777654433 66666677777777777666543222 23344566
Q ss_pred CCCEEEccccccCCCCchHHHHhhcccCcEEEe
Q 019237 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191 (344)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 191 (344)
+|++|.+..............+..+.+|+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 777776665543322222233444444444444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.8e-09 Score=70.84 Aligned_cols=61 Identities=34% Similarity=0.500 Sum_probs=49.9
Q ss_pred CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcC
Q 019237 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297 (344)
Q Consensus 237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 297 (344)
++|++|++++|+++...+.+|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888888855567888888899999998888866667788889999999988864
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=6.5e-10 Score=93.37 Aligned_cols=131 Identities=24% Similarity=0.224 Sum_probs=82.7
Q ss_pred CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237 108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187 (344)
Q Consensus 108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 187 (344)
-+.|+.+|+++|.+. .+.++..-.+.++.|++|+|.+..+.. ++.+++|+.||+++|.+..... --..+-+++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~G---wh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVG---WHLKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhh---hHhhhcCEe
Confidence 355777777766543 445555666777777777777775542 6777777777777777665432 113455677
Q ss_pred EEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251 (344)
Q Consensus 188 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 251 (344)
.|.++.|.+.... .+..+.+|..||+++|++....-...+. .+|+|+++.+.+|.+.+
T Consensus 356 tL~La~N~iE~LS-----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-----GLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhh-----hhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCccc
Confidence 7777777765532 3455567778888888774322222333 34578888888887773
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=2.1e-08 Score=83.32 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=22.0
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccc----cccCCCCCcEEEcc
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPE----FIGSLSRLRYLNLS 117 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~Ls 117 (344)
+..+..++.+++++|.|... -.. .+.+-.+|+..+++
T Consensus 26 l~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFS 66 (388)
T ss_pred HHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehh
Confidence 44467777788888877654 222 23334556666665
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=3.8e-08 Score=97.49 Aligned_cols=105 Identities=30% Similarity=0.389 Sum_probs=81.4
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
.+.+++|||++| .--+.+|..++++-+|++|++++..+.. +|..++++.+|.+|++..+.....+|....
T Consensus 570 m~~LrVLDLs~~--------~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 570 LPLLRVLDLSGN--------SSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred CcceEEEECCCC--------CccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhh
Confidence 467888899886 4456899999999999999999999985 999999999999999998777666677777
Q ss_pred cCCCCcEEEccCCCCCCCC-chhhhhcCCCCCEEEc
Q 019237 131 YLSGLVYLRLENSNLFSLG-SLEWLSHLSSLRHLDL 165 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~-~~~~l~~~~~L~~L~l 165 (344)
.+.+|++|.+......... ....+..+.+|+.+..
T Consensus 640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 7999999999887633211 1233444555555544
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=3.3e-09 Score=89.00 Aligned_cols=209 Identities=18% Similarity=0.154 Sum_probs=111.4
Q ss_pred CCCCCEEeCCCCCCCCCC-ccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 83 LHDLRHLDLSNNHFGGSP-VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+.++.+|+.+|.|.... +...+..+|.|+.|+|++|++...+...=....+|++|.|.++.+........+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456777777777775431 2233456777788888777655433221123457777777777766555545566677777
Q ss_pred EEEccccccCCCCchHHHHhh-cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc
Q 019237 162 HLDLSYINLTKSSDWFQVVAK-LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 240 (344)
+|+++.|.......-....+. .+.+.+|++..|...-... .......++++..+-+..|.+...+-.. -+...+.+.
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~-~~~l~r~Fpnv~sv~v~e~PlK~~s~ek-~se~~p~~~ 227 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN-KNKLSRIFPNVNSVFVCEGPLKTESSEK-GSEPFPSLS 227 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH-HHhHHhhcccchheeeecCcccchhhcc-cCCCCCcch
Confidence 777777743332100011111 2244455554443221100 0011223366666667677663311111 122233555
Q ss_pred EEEccCCcCcC-CchHhhhcCCCCCEEEccCCccCCCcc------ccccCCCCCCEEeCC
Q 019237 241 VLDLAFNSLRG-SIPEAFQHMVSLKSLHLTDNELEGGIP------KFFGNMCSLNRLFLP 293 (344)
Q Consensus 241 ~L~ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~l~~l~~L~~L~L~ 293 (344)
-|+|+.++|.. .-.+.+..++.|+.|.++++.+.+.+. -.++++++++.|+=+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 67777777653 224556677777777888777654221 124667777776654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=3.3e-09 Score=97.85 Aligned_cols=128 Identities=27% Similarity=0.292 Sum_probs=61.9
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237 83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH 162 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~ 162 (344)
+..++.+.++.|.+.. +...+..+.+|+.+++.+|.+..... .+..+.+|++|++++|.|..... +..++.|+.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc---hhhccchhh
Confidence 3344444455555433 22334445555555555554443221 13445555666666665554432 344444555
Q ss_pred EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237 163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223 (344)
Q Consensus 163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 223 (344)
|++.+|.+..... +..++.|+.+++++|.+...... . ...+.+++.+.+.+|.+
T Consensus 145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSI 198 (414)
T ss_pred heeccCcchhccC----CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCch
Confidence 6666665555432 23355555555555555443321 0 13335555555555554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=2.2e-08 Score=65.63 Aligned_cols=61 Identities=38% Similarity=0.580 Sum_probs=47.2
Q ss_pred CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCcc
Q 019237 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL 273 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 273 (344)
++|++|++++|.+ ..+++..+..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3677888888877 456666777777888888888888866677888888888888888864
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=2.4e-09 Score=99.81 Aligned_cols=151 Identities=26% Similarity=0.268 Sum_probs=107.6
Q ss_pred HHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEE
Q 019237 10 REALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHL 89 (344)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 89 (344)
.+||+.+.++++......+.|++ +...++++| .+. .+..++.-++.|+.|
T Consensus 143 l~Al~~v~ascggd~~ns~~Wn~---------------------L~~a~fsyN--------~L~-~mD~SLqll~ale~L 192 (1096)
T KOG1859|consen 143 LDALRHVFASCGGDISNSPVWNK---------------------LATASFSYN--------RLV-LMDESLQLLPALESL 192 (1096)
T ss_pred HHHHHHHHHHhccccccchhhhh---------------------Hhhhhcchh--------hHH-hHHHHHHHHHHhhhh
Confidence 46777777777544455567763 444455555 332 234456667788999
Q ss_pred eCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc
Q 019237 90 DLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN 169 (344)
Q Consensus 90 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~ 169 (344)
+|++|.++.. ..+.++++|++|||++|.+....--....+. |+.|++++|.+++.. .+.++.+|+.||++.|-
T Consensus 193 nLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~---gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 193 NLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR---GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh---hHHhhhhhhccchhHhh
Confidence 9999988763 3778899999999998877643333333444 899999999888663 47788889999999998
Q ss_pred cCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237 170 LTKSSDWFQVVAKLRSLKTLVLRSCALPP 198 (344)
Q Consensus 170 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 198 (344)
+.+... ...+..+..|+.|+|.+|.+.-
T Consensus 266 l~~hse-L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 266 LSEHSE-LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhcchh-hhHHHHHHHHHHHhhcCCcccc
Confidence 888755 2467778889999999987643
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=4.2e-09 Score=92.21 Aligned_cols=237 Identities=19% Similarity=0.109 Sum_probs=120.3
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCC-CCCCccccccCCCCCcEEEccCCcCCCcCC-c-c
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHF-GGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-R-P 128 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~-~ 128 (344)
++++.+.+.|..-... ..+-....+++++++|.+.++.. +.......-..+++|++|++..|...+... . .
T Consensus 138 g~lk~LSlrG~r~v~~------sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD------SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCc------chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 6778888887631110 12223446778888888888753 332222333457888888888765543221 1 1
Q ss_pred cccCCCCcEEEccCCCCCCCC-chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc
Q 019237 129 FQYLSGLVYLRLENSNLFSLG-SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF 207 (344)
Q Consensus 129 ~~~l~~L~~L~ls~~~l~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 207 (344)
...+++|++|++++|.-.+.. +......+..++.+.+.+|.-.....+...-..+..+..+++..|....... .....
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~ 290 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIA 290 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-HHHHh
Confidence 235788888888888644332 2233444555666666655444333322233334445555544442211111 12223
Q ss_pred ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc-CcCCchH-hhhcCCCCCEEEccCCccCC--CccccccC
Q 019237 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPE-AFQHMVSLKSLHLTDNELEG--GIPKFFGN 283 (344)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~-~~~~~~~L~~L~l~~n~~~~--~~~~~l~~ 283 (344)
..+..|+.++.+++...+..+...+.....+|+.|-++.|+ |++.-.. .-.+++.|+.+++.++.... .+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 34466666666665443334444555555666666666664 3321111 11334555555555553321 11122234
Q ss_pred CCCCCEEeCCCC
Q 019237 284 MCSLNRLFLPHN 295 (344)
Q Consensus 284 l~~L~~L~L~~n 295 (344)
++.|+++.+++|
T Consensus 371 C~~lr~lslshc 382 (483)
T KOG4341|consen 371 CPRLRVLSLSHC 382 (483)
T ss_pred CchhccCChhhh
Confidence 455555555555
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1.6e-08 Score=93.29 Aligned_cols=180 Identities=27% Similarity=0.338 Sum_probs=111.7
Q ss_pred chhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237 77 SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSH 156 (344)
Q Consensus 77 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~ 156 (344)
-..+..+++|+.+++..|.+.. +...+..+++|++|++++|.+...-+ +..+..|+.|++++|.+..... +..
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~---~~~ 160 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG---LES 160 (414)
T ss_pred hcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC---Ccc
Confidence 3446777888888999888876 44446778889999999887765433 4556678888999988886654 445
Q ss_pred CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237 157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236 (344)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 236 (344)
+++|+.+++++|.+...... . ...+..++.+.+.+|.+..... ......+..+++..|.+.. +- .+....
T Consensus 161 l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~--~~-~l~~~~ 230 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISK--LE-GLNELV 230 (414)
T ss_pred chhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc-----hHHHHHHHHhhccccccee--cc-Ccccch
Confidence 88888888888887766421 1 4777788888888887665432 1222333444555555521 11 100000
Q ss_pred -CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC
Q 019237 237 -RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE 274 (344)
Q Consensus 237 -~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 274 (344)
..|+.+++++|.+. ..+..+..+..+..|++..|++.
T Consensus 231 ~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 231 MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 02556666666655 33344444555566666655554
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.50 E-value=1.9e-07 Score=56.18 Aligned_cols=40 Identities=50% Similarity=1.021 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHhhcc-ccCCCCCCCCCCCC-CCCCccccceEEc
Q 019237 7 DEEREALLTFKQSMV-DKYGVLSSWGRDND-KRDCCKWRGVRCS 48 (344)
Q Consensus 7 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~-~~~~c~~~~~~c~ 48 (344)
+.|++||++|+.++. +|.....+|+. . ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 679999999999996 57788899994 2 2799999999994
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=1.4e-08 Score=94.90 Aligned_cols=127 Identities=26% Similarity=0.313 Sum_probs=65.5
Q ss_pred CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238 (344)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 238 (344)
.|.+.+.+.|.+.... .++.-++.++.|+|++|+++... .+..++.|++||++.|.+ ..+ +.+...-..
T Consensus 165 ~L~~a~fsyN~L~~mD---~SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L--~~v-p~l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD---ESLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCL--RHV-PQLSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHHhHH---HHHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchh--ccc-cccchhhhh
Confidence 4455555555544332 24555666666666666665532 244456666666666666 122 222222224
Q ss_pred ccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC-ccccccCCCCCCEEeCCCCcCc
Q 019237 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG-IPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 239 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
|..|.+++|.++ .+ ..+.++++|+.||+++|-+.+. -...+..+..|+.|.|.+|.+-
T Consensus 234 L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666666654 21 2234556666666666655531 1112334556666666666553
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=1e-07 Score=71.13 Aligned_cols=132 Identities=24% Similarity=0.274 Sum_probs=86.1
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
.+..++++.|.+-..... .........|+..++++|.+ ..+++.+....+.++.|++++|.++ .+|..+..++.|+
T Consensus 28 E~h~ldLssc~lm~i~da-vy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADA-VYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHH-HHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 445556666654433221 11222336777778888877 5667776666667888888888888 7777788888888
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLE 322 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~ 322 (344)
.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-.. .+.++.+++.-+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888888887 66666666788888888888776 44444222111 566666665444
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2.1e-07 Score=69.57 Aligned_cols=136 Identities=22% Similarity=0.214 Sum_probs=85.4
Q ss_pred CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238 (344)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 238 (344)
.+..++|+.|.+.........+.....|...++++|.+...+..+ ...++.++.|++++|.+ ..+|.. ...++.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf---t~kf~t~t~lNl~~nei--sdvPeE-~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF---TIKFPTATTLNLANNEI--SDVPEE-LAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH---hhccchhhhhhcchhhh--hhchHH-HhhhHH
Confidence 456667777766665554455666667777788888777766532 23335777888888887 456665 444557
Q ss_pred ccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 239 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
|+.|+++.|.+. ..|..+..+.++..|+..+|... .++-.+..-...-..++.++.+.+.-+
T Consensus 102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 888888888887 66666666777788888888766 444433222222333445555554443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=4.7e-06 Score=50.18 Aligned_cols=36 Identities=31% Similarity=0.545 Sum_probs=21.5
Q ss_pred CCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 262 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
+|++|++++|+++ .+|..+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666666
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=3.3e-06 Score=81.90 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=86.2
Q ss_pred CCCCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCc-CCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLK-VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+|+.|++++...-...-+..++ .+|.|+.|.+++-.+... +.....++++|..||+|+++++.. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 57788888776543222333333 478888888876554332 223334677888888888887755 4567778888
Q ss_pred EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC---chhhccccCCcccEEEcCCCCCCC
Q 019237 162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP---SFIWHFNLSTSIETLDLSDNNLPS 225 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~ 225 (344)
.|.+.+-.+..... ...+..+++|++|++++........ .+......++.|+.||.+++.+..
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 88777776665443 2456678888888887765544331 111222335788888888877654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=3.1e-06 Score=82.08 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=16.7
Q ss_pred CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237 157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198 (344)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 198 (344)
+|.|++|.+++-.+.... |.....++++|..|+++++++..
T Consensus 147 LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred CcccceEEecCceecchh-HHHHhhccCccceeecCCCCccC
Confidence 344444444443332221 23334444444444444444433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=5.8e-06 Score=66.03 Aligned_cols=106 Identities=26% Similarity=0.297 Sum_probs=64.9
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
....+||+.|++... ..|..++.|.+|.+.+|.+...-|.--.-+++|+.|.+.+|++........+..+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456677777776432 34556677777777777766555544444566777777777777666556666777777777
Q ss_pred ccccccCCCCchH-HHHhhcccCcEEEecC
Q 019237 165 LSYINLTKSSDWF-QVVAKLRSLKTLVLRS 193 (344)
Q Consensus 165 l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~ 193 (344)
+-+|.+....... ..+..+|+|+.|++.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777665542211 1234455555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=2.1e-05 Score=62.92 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 86 LRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
=+.+++++..+... .. ++ -......++|++|.+... ..|..+++|.+|.+.+|.|+.+.. ..-..+++|+.|.
T Consensus 21 e~e~~LR~lkip~i--en-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI--EN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccch--hh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEE
Confidence 35566666655432 11 22 234566677776665432 234566777777777777775542 2223456677777
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCC
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDN 221 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 221 (344)
+.+|.+....+ ...+..++.|+.|.+-+|.+.....=-......+++|+.||+++-
T Consensus 95 LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 95 LTNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777666543 235666777777777777665433211122334466666666553
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.4e-05 Score=48.09 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=30.4
Q ss_pred CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC
Q 019237 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE 274 (344)
Q Consensus 237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 274 (344)
++|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 37889999999998 67777889999999999999888
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.90 E-value=7.4e-06 Score=68.09 Aligned_cols=118 Identities=24% Similarity=0.199 Sum_probs=78.7
Q ss_pred cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCC--cCCCcCCcccccCCCCcEEEccCCCCCCCCch
Q 019237 74 GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL 151 (344)
Q Consensus 74 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~ 151 (344)
|.+..-.-.+..|+.+.+.+..++.. ..+..+++|++|.++.| +..+.++.....+++|+++++++|.+..+...
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 34555455566677777777766542 23456788999999988 55555555556678899999999988865555
Q ss_pred hhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEecCC
Q 019237 152 EWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLRSC 194 (344)
Q Consensus 152 ~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 194 (344)
..+..+.+|..|++.+|......... ..+.-+++|+.|+-...
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 66777788888888888776653322 23445566666654433
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=0.00011 Score=66.13 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC-CCCCCCchhhhhcCC
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS-NLFSLGSLEWLSHLS 158 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~-~l~~~~~~~~l~~~~ 158 (344)
+..+.+++.|++++|.++. +|. + .++|+.|.+++|.....+|..+. .+|++|.+++| .+... ..
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL--------P~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL--------PE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc--------cc
Confidence 4445667777777776655 331 1 23577777776665555555442 46777777776 33211 23
Q ss_pred CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238 (344)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 238 (344)
+|++|++..+.......++ ++|+.|.+..+....... . ....+.+|++|++++|... ..+.. .+.+
T Consensus 113 sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~--l-p~~LPsSLk~L~Is~c~~i--~LP~~---LP~S 178 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQAR--I-DNLISPSLKTLSLTGCSNI--ILPEK---LPES 178 (426)
T ss_pred ccceEEeCCCCCcccccCc------chHhheeccccccccccc--c-ccccCCcccEEEecCCCcc--cCccc---cccc
Confidence 4666666554433222111 234555553322100000 0 0012256777777766541 22221 2236
Q ss_pred ccEEEccCC
Q 019237 239 ILVLDLAFN 247 (344)
Q Consensus 239 L~~L~ls~n 247 (344)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777777654
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=1e-06 Score=77.59 Aligned_cols=237 Identities=19% Similarity=0.154 Sum_probs=111.3
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhh-hcCCCCCEEeCCCCC-CCCCCccc-cccCCCCCcEEEccCCcCCCc--CC
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPAL-LKLHDLRHLDLSNNH-FGGSPVPE-FIGSLSRLRYLNLSCGTSLLK--VP 126 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~-~l~~l~~L~~L~Ls~~~~~~~--~~ 126 (344)
+.++.+++.++. .++...-.++ .++++|+++++..|. ++.. ... ....+++|++|++++|.-+.. +.
T Consensus 164 pnIehL~l~gc~-------~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 164 PNIEHLALYGCK-------KITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred Cchhhhhhhcce-------eccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence 567777776663 3443322233 567899999998854 4443 233 334689999999998865432 11
Q ss_pred cccccCCCCcEEEccCCCCCCCCch-hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhh
Q 019237 127 RPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW 205 (344)
Q Consensus 127 ~~~~~l~~L~~L~ls~~~l~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 205 (344)
....++..++.+.+.+|.-.+.... ..-+.+.-+.++++..|.......+...-..+..|+.|..+++...+... ...
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~-l~a 314 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV-LWA 314 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH-HHH
Confidence 2223455566666665532222211 11122344445554444333333233333445555555555544322111 011
Q ss_pred ccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCc-C-CchHhhhcCCCCCEEEccCCccCCCc-----c
Q 019237 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR-G-SIPEAFQHMVSLKSLHLTDNELEGGI-----P 278 (344)
Q Consensus 206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~-~-~~~~~~~~~~~L~~L~l~~n~~~~~~-----~ 278 (344)
....+.+|+.+-+.+++.-...-...+...++.|+.+++..+... + .+...-.+++.|+.|.+++|...... .
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 122335555555555532111222333444445555555554322 1 12222234555555555555322111 1
Q ss_pred ccccCCCCCCEEeCCCCcC
Q 019237 279 KFFGNMCSLNRLFLPHNKL 297 (344)
Q Consensus 279 ~~l~~l~~L~~L~L~~n~l 297 (344)
..-+.+..|..+.|+++..
T Consensus 395 ~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hccccccccceeeecCCCC
Confidence 1123344555555555543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00034 Score=63.18 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=82.6
Q ss_pred ccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCC-CCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhh
Q 019237 105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL-FSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAK 182 (344)
Q Consensus 105 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~ 182 (344)
+..+.++++|++++|.+ ..+|. -..+|++|.+++|.- +..+ ..+ .++|++|.+++| .+...
T Consensus 48 ~~~~~~l~~L~Is~c~L-~sLP~---LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL--------- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDI-ESLPV---LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL--------- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCC-cccCC---CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc---------
Confidence 44578899999998844 44452 124699999988643 3333 222 358999999988 33222
Q ss_pred cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC-CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCC
Q 019237 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL-PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261 (344)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 261 (344)
.+.|+.|++..+...... ..+.+|+.|.+.++.. .....+ ...+++|+.|++++|... ..|..+. .
T Consensus 111 P~sLe~L~L~~n~~~~L~-------~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 111 PESVRSLEIKGSATDSIK-------NVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred ccccceEEeCCCCCcccc-------cCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--c
Confidence 235777777655433211 1235777887754321 110111 123357999999988866 4444333 5
Q ss_pred CCCEEEccCCc
Q 019237 262 SLKSLHLTDNE 272 (344)
Q Consensus 262 ~L~~L~l~~n~ 272 (344)
+|+.|.++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 78889887764
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=3.6e-05 Score=72.56 Aligned_cols=115 Identities=20% Similarity=0.189 Sum_probs=66.4
Q ss_pred cCCCCCEEeCCCCC-CCCCCccccccCCCCCcEEEccCC-cCCCcCC----cccccCCCCcEEEccCCC-CCCCCchhhh
Q 019237 82 KLHDLRHLDLSNNH-FGGSPVPEFIGSLSRLRYLNLSCG-TSLLKVP----RPFQYLSGLVYLRLENSN-LFSLGSLEWL 154 (344)
Q Consensus 82 ~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~ls~~~-l~~~~~~~~l 154 (344)
.++.|+.+.+..+. ++...+......+++|+.|+++.+ ......+ .....+.+|+.|+++++. ++.... ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 35777777777663 332223344456777888887752 2222111 122345777888888777 443333 333
Q ss_pred h-cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237 155 S-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197 (344)
Q Consensus 155 ~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 197 (344)
. .+++|++|.+..|.-.....+......++.|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3 367788887766663222334455667777888888776543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=8.2e-05 Score=70.11 Aligned_cols=189 Identities=23% Similarity=0.153 Sum_probs=100.8
Q ss_pred CCCCCcEEEccCCcCCCc--CCcccccCCCCcEEEccCC-CCCCC-C--chhhhhcCCCCCEEEccccccCCCCchHHHH
Q 019237 107 SLSRLRYLNLSCGTSLLK--VPRPFQYLSGLVYLRLENS-NLFSL-G--SLEWLSHLSSLRHLDLSYINLTKSSDWFQVV 180 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~ls~~-~l~~~-~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l 180 (344)
.++.|+.+.+..+..... .-.....++.|+.|+++++ ..... + .......+++|+.++++++.......+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467788887776655543 2234456778888888763 11111 1 1123445677888888877732222223333
Q ss_pred hhcccCcEEEecCCC-CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc----CcC----
Q 019237 181 AKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS----LRG---- 251 (344)
Q Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~----l~~---- 251 (344)
..+++|++|.+.+|. +++..- ......++.|++|+++++..........+...+++++.|.+.... ++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred hhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 447788888876665 333221 334455577888888877553222223334445555555433322 111
Q ss_pred ---------CchHhhhcCCCCCEEEccCCccCCCc-cccccCCCCC--------------CEEeCCCCcC
Q 019237 252 ---------SIPEAFQHMVSLKSLHLTDNELEGGI-PKFFGNMCSL--------------NRLFLPHNKL 297 (344)
Q Consensus 252 ---------~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L--------------~~L~L~~n~l 297 (344)
........+++++.+.+..+...... ...+.+++.| +.|+++.+..
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRL 413 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcc
Confidence 11223456677777777777633222 2334445444 6777777643
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00018 Score=59.93 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=57.0
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCch-hhhhcCCCCCEEEccccccCCCCchHHHHhhccc
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 185 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 185 (344)
.+..|+.+.+.+..++.. ..+-.+++|++|.++.|+....... .....+|+|+++++++|++..... ...+..+++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcc
Confidence 445555555554433321 1233466777777777743322211 122334777777777777665422 234556666
Q ss_pred CcEEEecCCCCCCCCCchhhccccCCcccEEEc
Q 019237 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDL 218 (344)
Q Consensus 186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 218 (344)
|..|++.+|..+....--...|..+++|++|+-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777777766655533221233444566666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=2.2e-05 Score=65.85 Aligned_cols=103 Identities=26% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237 83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH 162 (344)
Q Consensus 83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~ 162 (344)
+.+.++|++=+|.+..+ ..+.+|+.|+.|.|+-|.+...-| +..|.+|++|+|..|.|........+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44566777777776553 223457777777777776665433 4567788888888888877766677778888888
Q ss_pred EEccccccCCCCc--h-HHHHhhcccCcEEE
Q 019237 163 LDLSYINLTKSSD--W-FQVVAKLRSLKTLV 190 (344)
Q Consensus 163 L~l~~~~~~~~~~--~-~~~l~~~~~L~~L~ 190 (344)
|.|..|...+... . ...+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877655421 1 13456677777775
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=2.7e-05 Score=65.36 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=42.3
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS 212 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 212 (344)
.+.+.|+..+|.+..+ .....|+.|+.|.|+-|.++... .+..|.+|++|+|..|.+.+... +.-+..+++
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~----pl~rCtrLkElYLRkN~I~sldE--L~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA----PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch----hHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence 3445555555555433 23445566666666666555443 34555566666666555554332 233444455
Q ss_pred ccEEEcCCCC
Q 019237 213 IETLDLSDNN 222 (344)
Q Consensus 213 L~~L~l~~n~ 222 (344)
|+.|++..|.
T Consensus 90 Lr~LWL~ENP 99 (388)
T KOG2123|consen 90 LRTLWLDENP 99 (388)
T ss_pred hhhHhhccCC
Confidence 5555555553
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0035 Score=31.34 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=8.6
Q ss_pred CCEEeCCCCcCccccchHH
Q 019237 287 LNRLFLPHNKLSGELSEMI 305 (344)
Q Consensus 287 L~~L~L~~n~l~~~~~~~~ 305 (344)
|++|+|++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444433
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.68 E-value=0.019 Score=43.40 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=2.7
Q ss_pred cCCCCCEEeC
Q 019237 82 KLHDLRHLDL 91 (344)
Q Consensus 82 ~l~~L~~L~l 91 (344)
++.+|+.+.+
T Consensus 10 ~~~~l~~i~~ 19 (129)
T PF13306_consen 10 NCSNLESITF 19 (129)
T ss_dssp T-TT--EEEE
T ss_pred CCCCCCEEEE
Confidence 3333444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.032 Score=42.10 Aligned_cols=101 Identities=12% Similarity=0.206 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++.+.+.. .+...-..+|..++.|+.+.+..+ +... -...+..+++|+.+.+.. .........|..
T Consensus 12 ~~l~~i~~~~---------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 12 SNLESITFPN---------TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp TT--EEEETS---------T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CCCCEEEECC---------CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccc
Confidence 3577777764 344444556778888999998775 5443 334566777888888864 443334455666
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccc
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY 167 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~ 167 (344)
+.+|+.+.+..+ +...+. ..+..+ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence 788888887654 332222 334454 666666654
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.37 E-value=0.00023 Score=66.37 Aligned_cols=190 Identities=29% Similarity=0.329 Sum_probs=107.1
Q ss_pred CCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCCcCCccc----ccC-CCCcEEEccCCCCCCCCch---hhh
Q 019237 86 LRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVPRPF----QYL-SGLVYLRLENSNLFSLGSL---EWL 154 (344)
Q Consensus 86 L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~----~~l-~~L~~L~ls~~~l~~~~~~---~~l 154 (344)
+..+.+.+|.+...+ +...+...+.|+.|++++|++.......+ ... ..+++|.+..|.++..... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777776542 22344567778888888777764322222 122 4567777777777654322 344
Q ss_pred hcCCCCCEEEccccccCCC--CchHHHHh----hcccCcEEEecCCCCCCCCCch-hhccccCCc-ccEEEcCCCCCCCC
Q 019237 155 SHLSSLRHLDLSYINLTKS--SDWFQVVA----KLRSLKTLVLRSCALPPINPSF-IWHFNLSTS-IETLDLSDNNLPSS 226 (344)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~--~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~-L~~L~l~~n~l~~~ 226 (344)
.....++.++++.|.+... ......+. ...++++|.+.+|.++...... ...+...++ +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5566788888888876433 11223333 3667778888887766432211 111222233 55577777777431
Q ss_pred C---CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCC
Q 019237 227 S---VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 227 ~---~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
. ..+.+....+.+++++++.|.|+.. ....+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 0 1111111113567777887777653 34455666777777777777664
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.15 E-value=0.00048 Score=64.23 Aligned_cols=192 Identities=24% Similarity=0.199 Sum_probs=122.6
Q ss_pred CcEEEccCCcCCCcCCc----ccccCCCCcEEEccCCCCCCCCch---hhhhcC-CCCCEEEccccccCCC--CchHHHH
Q 019237 111 LRYLNLSCGTSLLKVPR----PFQYLSGLVYLRLENSNLFSLGSL---EWLSHL-SSLRHLDLSYINLTKS--SDWFQVV 180 (344)
Q Consensus 111 L~~L~Ls~~~~~~~~~~----~~~~l~~L~~L~ls~~~l~~~~~~---~~l~~~-~~L~~L~l~~~~~~~~--~~~~~~l 180 (344)
+.++.+.+|.+...... .+.....|+.|++++|.+...... ..+... ..+++|.+..|.+... ..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77788888877654433 334568899999999998843321 112232 4677788888877665 3445667
Q ss_pred hhcccCcEEEecCCCCCCCCCc-hhhc----cccCCcccEEEcCCCCCCCCCCc--chhhhccCC-ccEEEccCCcCcCC
Q 019237 181 AKLRSLKTLVLRSCALPPINPS-FIWH----FNLSTSIETLDLSDNNLPSSSVY--PWLFNLSRN-ILVLDLAFNSLRGS 252 (344)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~-~~~~----~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~~-L~~L~ls~n~l~~~ 252 (344)
.....++.+++..|.+...... .... +....++++|.++++.++..... .......+. +..|++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 7788899999998887522110 0111 12346788888888887431111 111222223 66688888888753
Q ss_pred ----chHhhhcC-CCCCEEEccCCccCC----CccccccCCCCCCEEeCCCCcCccccc
Q 019237 253 ----IPEAFQHM-VSLKSLHLTDNELEG----GIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 253 ----~~~~~~~~-~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
....+... ..+++++++.|.++. .+...+..++.++.+.+++|.+.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 23344444 567899999998886 344556677899999999998876543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.01 Score=29.59 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=10.2
Q ss_pred CCEEEccCCccCCCcccccc
Q 019237 263 LKSLHLTDNELEGGIPKFFG 282 (344)
Q Consensus 263 L~~L~l~~n~~~~~~~~~l~ 282 (344)
|++|++++|+++ .+|..++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455566666555 4554443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.13 E-value=0.027 Score=28.67 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=14.7
Q ss_pred CCCCCEEeCCCCcCccccchHHh
Q 019237 284 MCSLNRLFLPHNKLSGELSEMIQ 306 (344)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~~~~~ 306 (344)
+++|+.|+|++|.+++..+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36788888888888776666554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.37 E-value=0.059 Score=24.92 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=3.0
Q ss_pred CEEeCCCCc
Q 019237 288 NRLFLPHNK 296 (344)
Q Consensus 288 ~~L~L~~n~ 296 (344)
+.|+|++|.
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.025 Score=45.68 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=36.4
Q ss_pred CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC-Ccccccc-CCCCCCEEeCCCC-cCccccchHHhhccC
Q 019237 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GIPKFFG-NMCSLNRLFLPHN-KLSGELSEMIQNLSG 310 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 310 (344)
.++.+|-+++.|.....+.+.+++.++.|.+.+|.--+ ...+.+. -.++|+.|+|++| .+|+..-..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 35566666666555555555555666666665554221 1112121 2356666666666 455444444444443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.015 Score=46.94 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=13.2
Q ss_pred CccEEEccCC-cCcCCchHhhhcCCCCCEEEc
Q 019237 238 NILVLDLAFN-SLRGSIPEAFQHMVSLKSLHL 268 (344)
Q Consensus 238 ~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L~l 268 (344)
+|+.|++++| .||+....++..+++|+.|.+
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 4444444443 333333334444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.84 E-value=0.46 Score=24.47 Aligned_cols=14 Identities=43% Similarity=0.456 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCcCc
Q 019237 285 CSLNRLFLPHNKLS 298 (344)
Q Consensus 285 ~~L~~L~L~~n~l~ 298 (344)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.84 E-value=0.46 Score=24.47 Aligned_cols=14 Identities=43% Similarity=0.456 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCcCc
Q 019237 285 CSLNRLFLPHNKLS 298 (344)
Q Consensus 285 ~~L~~L~L~~n~l~ 298 (344)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.33 E-value=0.58 Score=24.76 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCCCEEeCCCCcCccccchHHh
Q 019237 285 CSLNRLFLPHNKLSGELSEMIQ 306 (344)
Q Consensus 285 ~~L~~L~L~~n~l~~~~~~~~~ 306 (344)
++|+.|+|++|.+.......++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4678888888887755444444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.65 E-value=0.1 Score=43.28 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=60.3
Q ss_pred CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL 290 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 290 (344)
...+.||++.|++. ..-.. +.....++.|+++.|.+. ..|..++....++.+++..|... ..|.+++..+.++++
T Consensus 42 kr~tvld~~s~r~v--n~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV--NLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ceeeeehhhhhHHH--hhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 56677777777662 22222 223336778888888777 77777777777888888777766 788888888999999
Q ss_pred eCCCCcCc
Q 019237 291 FLPHNKLS 298 (344)
Q Consensus 291 ~L~~n~l~ 298 (344)
++-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888876
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.47 E-value=20 Score=33.45 Aligned_cols=237 Identities=17% Similarity=0.060 Sum_probs=120.4
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcC---CCCCEEeCCCCCCCCCCccc--cccCCCCCcEEEccCCcCC----
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKL---HDLRHLDLSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTSL---- 122 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~Ls~~~~~---- 122 (344)
.-++.++++.+ ..+..+|..+..+ ..++.++.+...+....... ..++-.+|+..+++.|...
T Consensus 214 ~~lteldls~n--------~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg 285 (553)
T KOG4242|consen 214 LWLTELDLSTN--------GGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKG 285 (553)
T ss_pred ccccccccccC--------CCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccc
Confidence 44667777777 5555555533222 34566666665543321111 2234556777777766443
Q ss_pred CcCCccc----ccCCCCcEEEccCCCCCCCCchhhhhc-----CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecC
Q 019237 123 LKVPRPF----QYLSGLVYLRLENSNLFSLGSLEWLSH-----LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193 (344)
Q Consensus 123 ~~~~~~~----~~l~~L~~L~ls~~~l~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 193 (344)
.+++... ..-.++ +|++..++.........+-. -+.=-++++..|....... ...-..=..+++|....
T Consensus 286 ~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v-leaci~g~R~q~l~~rd 363 (553)
T KOG4242|consen 286 EEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV-LEACIFGQRVQVLLQRD 363 (553)
T ss_pred cccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch-hhccccceeeeEeeccc
Confidence 1233222 222455 67776665432221111111 1122334455544433321 11222224578888888
Q ss_pred CCCCCCCCchhhccccCCcccEEEcCCCCC---CCCCCc-chh---hhccCCccEEEccCCcCcCCchH---hhhcCCCC
Q 019237 194 CALPPINPSFIWHFNLSTSIETLDLSDNNL---PSSSVY-PWL---FNLSRNILVLDLAFNSLRGSIPE---AFQHMVSL 263 (344)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~-~~~---~~~~~~L~~L~ls~n~l~~~~~~---~~~~~~~L 263 (344)
|.+.+...... .....++++.+.+.+..- .+..+. +.+ ...--.++.+.++.|......-. ....-+.+
T Consensus 364 nnldgeg~~vg-k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl 442 (553)
T KOG4242|consen 364 NNLDGEGGAVG-KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTL 442 (553)
T ss_pred ccccccccccc-ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCccc
Confidence 77766543322 223335666666655422 110111 111 01112477788888877743322 23445678
Q ss_pred CEEEccCCccCC----CccccccCCCCCCEEeCCCCcCcc
Q 019237 264 KSLHLTDNELEG----GIPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 264 ~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
..|++++|.+.. .+|..+.....++.+..+.|..+.
T Consensus 443 ~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 443 AKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred ccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 899999998764 455666666778888888876653
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.15 E-value=2.2 Score=40.10 Aligned_cols=11 Identities=36% Similarity=0.190 Sum_probs=4.4
Q ss_pred ccEEEccCCcC
Q 019237 239 ILVLDLAFNSL 249 (344)
Q Consensus 239 L~~L~ls~n~l 249 (344)
|++|-+.+|.+
T Consensus 272 Leel~l~GNPl 282 (585)
T KOG3763|consen 272 LEELVLEGNPL 282 (585)
T ss_pred HHHeeecCCcc
Confidence 33444444433
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.03 E-value=3.7 Score=21.06 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=10.2
Q ss_pred CCCCCEEeCCCC-cCccc
Q 019237 284 MCSLNRLFLPHN-KLSGE 300 (344)
Q Consensus 284 l~~L~~L~L~~n-~l~~~ 300 (344)
+++|+.|+|++| .+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356777777776 35543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.05 E-value=4.3 Score=21.06 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=7.8
Q ss_pred CCCCEEEccCCccC
Q 019237 261 VSLKSLHLTDNELE 274 (344)
Q Consensus 261 ~~L~~L~l~~n~~~ 274 (344)
.+|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555566655554
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.70 E-value=3.5 Score=21.42 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=9.0
Q ss_pred CCCEEEccCCccCCCccc
Q 019237 262 SLKSLHLTDNELEGGIPK 279 (344)
Q Consensus 262 ~L~~L~l~~n~~~~~~~~ 279 (344)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555566666555 3443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.21 E-value=2.4 Score=39.89 Aligned_cols=65 Identities=26% Similarity=0.273 Sum_probs=35.2
Q ss_pred CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhc--CCCCCEEEccCCccCC
Q 019237 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH--MVSLKSLHLTDNELEG 275 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~~L~~L~l~~n~~~~ 275 (344)
+.+..++++.|++....-...+....|+|+.|+|++|...-....++.+ ...|++|-+.||.+++
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 5566666777766433333445555567777777777221111122222 2346677777777764
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.26 E-value=0.16 Score=42.23 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.||++.++.. .+-..|.-++.+..++++.|.+.- .|..++....+.++++..|. ....|.++..
T Consensus 42 kr~tvld~~s~r~v---------n~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k 109 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV---------NLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNN-HSQQPKSQKK 109 (326)
T ss_pred ceeeeehhhhhHHH---------hhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccc-hhhCCccccc
Confidence 56777777776322 222334445556666777666544 55555555556666655333 3355666666
Q ss_pred CCCCcEEEccCCCCC
Q 019237 132 LSGLVYLRLENSNLF 146 (344)
Q Consensus 132 l~~L~~L~ls~~~l~ 146 (344)
.+.++++++-.+.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 666666666666544
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=29.29 E-value=39 Score=17.35 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.0
Q ss_pred CCEEEcccccc
Q 019237 160 LRHLDLSYINL 170 (344)
Q Consensus 160 L~~L~l~~~~~ 170 (344)
|++|.|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.77 E-value=76 Score=29.80 Aligned_cols=90 Identities=14% Similarity=-0.024 Sum_probs=44.4
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhh-hccCCccEEEccCCcCcC--------CchH
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF-NLSRNILVLDLAFNSLRG--------SIPE 255 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~ls~n~l~~--------~~~~ 255 (344)
.+.+++++.|......+...........++.++.+...+........+. .....++..+++.|..+- ..-+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 5667777777666555543333333345666666665553222222222 222346666666554431 1222
Q ss_pred hhhcCCCCCEEEccCCccCC
Q 019237 256 AFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 256 ~~~~~~~L~~L~l~~n~~~~ 275 (344)
.+..-.++ +|++..+...+
T Consensus 295 ~fS~~~sg-hln~~~~~~ps 313 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPS 313 (553)
T ss_pred ccCcCccc-ccccccccCch
Confidence 33444455 66666665554
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.87 E-value=56 Score=37.60 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.2
Q ss_pred EccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237 243 DLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 243 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899986667788888899999999998763
Done!