Query 019237
Match_columns 344
No_of_seqs 220 out of 3582
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-39 1.3E-43 285.1 17.0 293 3-319 1-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-37 5E-42 306.4 20.5 313 2-343 6-351 (768)
3 4eco_A Uncharacterized protein 100.0 1.1E-35 3.6E-40 287.2 19.8 280 6-306 28-423 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2.9E-33 9.8E-38 275.7 22.0 274 4-301 265-660 (876)
5 4fcg_A Uncharacterized protein 100.0 1.1E-32 3.9E-37 245.1 15.6 274 3-298 22-314 (328)
6 3rgz_A Protein brassinosteroid 100.0 9.5E-31 3.2E-35 257.9 22.5 257 52-324 394-723 (768)
7 3v47_A TOLL-like receptor 5B a 100.0 1.3E-30 4.5E-35 242.2 20.0 292 37-343 5-403 (455)
8 1xku_A Decorin; proteoglycan, 100.0 2.9E-28 1E-32 217.0 24.5 282 36-343 27-327 (330)
9 2id5_A Lingo-1, leucine rich r 100.0 8.4E-29 2.9E-33 231.4 21.0 277 52-343 32-328 (477)
10 3o6n_A APL1; leucine-rich repe 100.0 3.4E-28 1.2E-32 221.6 22.0 266 52-344 45-348 (390)
11 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-28 6.3E-33 218.4 19.8 277 38-343 31-328 (332)
12 3v47_A TOLL-like receptor 5B a 100.0 4.3E-29 1.5E-33 232.0 16.2 134 185-323 276-413 (455)
13 2id5_A Lingo-1, leucine rich r 100.0 9.4E-29 3.2E-33 231.1 18.4 266 64-344 36-305 (477)
14 3oja_B Anopheles plasmodium-re 100.0 8.1E-28 2.8E-32 230.7 23.6 265 53-344 52-354 (597)
15 3t6q_A CD180 antigen; protein- 100.0 6.9E-28 2.4E-32 231.8 20.8 271 53-343 255-555 (606)
16 3t6q_A CD180 antigen; protein- 100.0 4.2E-28 1.4E-32 233.3 18.8 247 71-323 312-565 (606)
17 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-28 6.4E-33 216.5 12.0 242 84-343 50-299 (313)
18 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-27 1E-31 227.4 20.8 102 70-172 66-167 (606)
19 1xku_A Decorin; proteoglycan, 100.0 7.3E-27 2.5E-31 207.9 21.1 266 53-343 32-301 (330)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-27 4.5E-32 227.1 16.9 286 39-343 3-418 (549)
21 3j0a_A TOLL-like receptor 5; m 99.9 5.6E-27 1.9E-31 233.3 20.1 285 40-343 14-370 (844)
22 4eco_A Uncharacterized protein 99.9 2.3E-27 7.7E-32 229.0 16.6 226 72-310 286-537 (636)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-26 6E-31 224.9 22.4 159 52-223 25-183 (680)
24 2z66_A Variable lymphocyte rec 99.9 4.4E-27 1.5E-31 207.1 16.2 270 38-323 5-292 (306)
25 2z80_A TOLL-like receptor 2, v 99.9 4.8E-27 1.6E-31 211.1 16.0 250 35-302 25-318 (353)
26 3vq2_A TLR4, TOLL-like recepto 99.9 1E-26 3.5E-31 223.6 19.3 139 51-200 31-169 (606)
27 2ft3_A Biglycan; proteoglycan, 99.9 6E-27 2.1E-31 208.6 15.8 263 53-343 34-302 (332)
28 4ecn_A Leucine-rich repeat pro 99.9 1.5E-26 5.2E-31 228.0 20.0 239 51-310 490-777 (876)
29 4fmz_A Internalin; leucine ric 99.9 2.8E-25 9.5E-30 199.0 26.5 251 51-344 65-342 (347)
30 2z7x_B TOLL-like receptor 1, v 99.9 8E-26 2.7E-30 213.5 22.5 109 208-318 321-434 (520)
31 3zyi_A Leucine-rich repeat-con 99.9 6.1E-26 2.1E-30 210.6 19.8 239 42-298 56-303 (452)
32 4fcg_A Uncharacterized protein 99.9 5.9E-26 2E-30 201.7 18.1 215 82-310 79-302 (328)
33 2z63_A TOLL-like receptor 4, v 99.9 9.5E-26 3.3E-30 215.2 19.8 103 235-343 419-526 (570)
34 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 208.2 19.5 239 42-298 45-292 (440)
35 3o6n_A APL1; leucine-rich repe 99.9 8.9E-26 3E-30 205.5 18.4 248 52-320 69-354 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-25 1.1E-29 211.3 22.7 109 52-172 52-160 (562)
37 4fmz_A Internalin; leucine ric 99.9 2.1E-24 7.1E-29 193.3 26.7 253 51-343 43-319 (347)
38 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-25 5.6E-30 216.0 20.9 101 237-343 469-575 (635)
39 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-25 8.2E-30 194.0 19.9 250 55-324 14-267 (285)
40 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-25 1.4E-29 215.1 22.3 140 52-201 49-188 (680)
41 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-25 5E-30 211.7 18.1 128 52-196 21-150 (520)
42 3oja_B Anopheles plasmodium-re 99.9 1.5E-25 5E-30 215.0 18.2 245 52-320 75-360 (597)
43 3zyi_A Leucine-rich repeat-con 99.9 2.6E-25 8.9E-30 206.3 18.3 253 44-320 49-305 (452)
44 3zyj_A Leucine-rich repeat-con 99.9 2.5E-25 8.7E-30 205.7 18.1 252 44-319 38-293 (440)
45 2z63_A TOLL-like receptor 4, v 99.9 2.7E-25 9.2E-30 212.1 18.1 102 71-173 63-164 (570)
46 2z81_A CD282 antigen, TOLL-lik 99.9 4.6E-25 1.6E-29 209.6 18.7 85 51-144 49-134 (549)
47 2z66_A Variable lymphocyte rec 99.9 8E-26 2.7E-30 199.0 12.6 249 55-322 10-265 (306)
48 1o6v_A Internalin A; bacterial 99.9 4.7E-24 1.6E-28 198.6 24.6 217 51-299 67-301 (466)
49 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 204.9 6.3 269 27-319 21-310 (312)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.9E-25 3.4E-29 207.9 19.9 127 55-198 34-160 (562)
51 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-24 2.3E-28 196.7 23.5 214 52-307 42-255 (457)
52 2o6q_A Variable lymphocyte rec 99.9 3.2E-24 1.1E-28 185.4 19.9 218 37-299 2-219 (270)
53 1o6v_A Internalin A; bacterial 99.9 1.3E-23 4.5E-28 195.6 25.0 255 51-343 89-383 (466)
54 3j0a_A TOLL-like receptor 5; m 99.9 7.2E-25 2.5E-29 218.1 17.5 258 71-343 15-346 (844)
55 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-24 4E-29 189.7 15.8 240 51-308 31-271 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-26 2E-30 200.9 7.2 241 52-322 34-280 (317)
57 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-25 7.5E-30 197.2 10.2 242 52-323 10-256 (317)
58 2z80_A TOLL-like receptor 2, v 99.9 7.4E-25 2.5E-29 196.8 12.9 246 57-322 36-318 (353)
59 1wwl_A Monocyte differentiatio 99.9 2.7E-25 9.4E-30 196.2 6.5 244 80-344 39-305 (312)
60 3oja_A Leucine-rich immune mol 99.9 4E-24 1.4E-28 199.8 12.7 229 52-310 34-263 (487)
61 3oja_A Leucine-rich immune mol 99.9 7.5E-25 2.6E-29 204.7 7.7 219 82-322 32-255 (487)
62 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-22 5.2E-27 187.6 23.0 232 51-322 63-303 (457)
63 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.5E-29 193.7 8.7 269 37-326 34-314 (336)
64 4g8a_A TOLL-like receptor 4; l 99.9 6.4E-23 2.2E-27 197.8 18.5 108 212-320 470-582 (635)
65 2z62_A TOLL-like receptor 4, v 99.9 8.1E-23 2.8E-27 177.1 15.9 210 84-302 28-241 (276)
66 1p9a_G Platelet glycoprotein I 99.9 3.7E-22 1.3E-26 174.1 19.1 204 80-299 6-209 (290)
67 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-23 1.8E-27 196.4 15.0 241 28-318 13-274 (622)
68 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.7E-27 174.8 16.0 211 80-310 37-247 (272)
69 2z62_A TOLL-like receptor 4, v 99.9 3.2E-22 1.1E-26 173.4 17.4 212 52-277 28-240 (276)
70 1jl5_A Outer protein YOPM; leu 99.9 1.3E-21 4.3E-26 181.3 20.4 213 71-319 142-371 (454)
71 2ca6_A RAN GTPase-activating p 99.9 2.6E-23 8.7E-28 189.0 8.8 248 75-322 23-320 (386)
72 1z7x_W Ribonuclease inhibitor; 99.9 9.1E-24 3.1E-28 196.3 4.7 245 53-303 86-359 (461)
73 3m19_A Variable lymphocyte rec 99.9 2.9E-21 1E-25 165.0 19.0 192 38-300 3-194 (251)
74 3rfs_A Internalin B, repeat mo 99.9 2.2E-21 7.5E-26 167.7 17.5 222 85-325 20-242 (272)
75 2ca6_A RAN GTPase-activating p 99.9 3.7E-23 1.3E-27 188.0 6.2 242 52-302 32-320 (386)
76 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-21 1.1E-25 184.3 19.7 222 52-321 61-300 (622)
77 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 180.2 7.9 228 85-319 65-308 (310)
78 1h6u_A Internalin H; cell adhe 99.9 3.4E-21 1.2E-25 169.5 18.0 192 82-298 39-230 (308)
79 1z7x_W Ribonuclease inhibitor; 99.9 1E-23 3.6E-28 196.0 2.0 283 52-344 56-379 (461)
80 3goz_A Leucine-rich repeat-con 99.9 2.8E-22 9.7E-27 180.5 11.1 224 78-302 44-301 (362)
81 4glp_A Monocyte differentiatio 99.9 3.8E-22 1.3E-26 175.8 10.9 236 52-300 64-309 (310)
82 2o6q_A Variable lymphocyte rec 99.9 2.1E-20 7.1E-25 161.4 20.7 201 85-321 17-221 (270)
83 1jl5_A Outer protein YOPM; leu 99.9 1.7E-20 5.7E-25 173.7 20.1 202 85-318 132-350 (454)
84 3goz_A Leucine-rich repeat-con 99.9 5.2E-22 1.8E-26 178.8 9.7 250 71-322 9-301 (362)
85 1p9a_G Platelet glycoprotein I 99.9 2.6E-20 8.8E-25 162.4 17.7 200 105-319 6-209 (290)
86 2xwt_C Thyrotropin receptor; s 99.8 5.4E-21 1.8E-25 162.1 12.8 197 85-296 32-237 (239)
87 2ast_B S-phase kinase-associat 99.8 5.7E-22 2E-26 176.6 5.5 239 52-307 70-315 (336)
88 1h6u_A Internalin H; cell adhe 99.8 1.5E-19 5.2E-24 159.0 20.4 191 52-275 41-231 (308)
89 2xwt_C Thyrotropin receptor; s 99.8 3.4E-20 1.2E-24 157.1 12.1 199 51-272 30-237 (239)
90 3cvr_A Invasion plasmid antige 99.8 7.1E-21 2.4E-25 179.7 7.9 208 28-309 34-254 (571)
91 3cvr_A Invasion plasmid antige 99.8 2E-19 6.7E-24 169.9 16.9 181 110-326 60-251 (571)
92 3m19_A Variable lymphocyte rec 99.8 2.2E-18 7.5E-23 147.0 15.9 176 134-320 15-194 (251)
93 2o6s_A Variable lymphocyte rec 99.8 2.7E-18 9.3E-23 142.2 14.6 66 238-310 125-190 (208)
94 2o6s_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 143.0 13.4 133 84-223 28-160 (208)
95 3ogk_B Coronatine-insensitive 99.8 5.9E-20 2E-24 175.9 4.2 84 236-319 435-527 (592)
96 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 156.5 11.4 230 44-302 6-240 (350)
97 4ay9_X Follicle-stimulating ho 99.8 3E-18 1E-22 153.5 13.7 235 39-295 8-256 (350)
98 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 148.6 13.9 173 80-275 42-214 (291)
99 1h6t_A Internalin B; cell adhe 99.8 7.5E-18 2.6E-22 146.9 15.0 190 86-300 26-215 (291)
100 1m9s_A Internalin B; cell inva 99.8 1E-17 3.5E-22 159.8 16.9 173 80-275 39-211 (605)
101 3ogk_B Coronatine-insensitive 99.8 1.8E-19 6.3E-24 172.5 4.0 129 210-344 377-522 (592)
102 3e6j_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 139.9 14.7 165 27-225 9-173 (229)
103 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.3E-22 157.5 14.3 191 85-300 22-212 (605)
104 4b8c_D Glucose-repressible alc 99.7 4.8E-18 1.6E-22 165.8 6.2 263 4-298 128-404 (727)
105 2p1m_B Transport inhibitor res 99.7 2.4E-18 8.1E-23 164.8 3.9 127 210-343 371-514 (594)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.8E-21 131.4 13.1 158 135-302 13-170 (220)
107 1xeu_A Internalin C; cellular 99.7 4.5E-17 1.6E-21 139.8 8.5 171 82-276 17-187 (263)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.7E-16 9.3E-21 131.2 13.0 158 111-278 13-170 (220)
109 2xot_A Amphoterin-induced prot 99.7 2.2E-16 7.6E-21 141.9 13.2 180 55-251 21-203 (361)
110 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 9.1E-21 131.3 12.6 153 136-299 14-166 (220)
111 2p1m_B Transport inhibitor res 99.7 6.2E-18 2.1E-22 161.9 2.3 243 52-306 105-393 (594)
112 3e6j_A Variable lymphocyte rec 99.7 1.4E-15 4.7E-20 127.8 16.0 155 135-301 21-175 (229)
113 4ezg_A Putative uncharacterize 99.7 4.6E-16 1.6E-20 127.6 12.5 152 132-299 43-195 (197)
114 2xot_A Amphoterin-induced prot 99.7 3.6E-16 1.2E-20 140.5 12.0 171 39-224 17-202 (361)
115 4ezg_A Putative uncharacterize 99.7 7.7E-16 2.6E-20 126.2 12.8 153 81-250 41-194 (197)
116 1xeu_A Internalin C; cellular 99.7 7.8E-17 2.7E-21 138.3 6.8 152 79-252 36-187 (263)
117 2v9t_B SLIT homolog 2 protein 99.7 1E-15 3.5E-20 127.7 12.5 140 76-224 26-165 (220)
118 1dce_A Protein (RAB geranylger 99.6 8.2E-18 2.8E-22 159.4 -2.7 121 212-342 442-567 (567)
119 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 121.2 9.6 137 52-199 24-162 (168)
120 1dce_A Protein (RAB geranylger 99.6 1.2E-17 4E-22 158.4 -6.0 184 107-302 347-550 (567)
121 2je0_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 116.4 9.0 130 52-192 17-148 (149)
122 4b8c_D Glucose-repressible alc 99.6 5.1E-15 1.7E-19 144.5 8.9 139 178-325 218-361 (727)
123 1w8a_A SLIT protein; signaling 99.5 2.8E-14 9.7E-19 116.3 11.4 114 185-302 30-143 (192)
124 2ell_A Acidic leucine-rich nuc 99.5 2.8E-14 9.6E-19 113.7 10.7 37 238-274 121-160 (168)
125 1w8a_A SLIT protein; signaling 99.5 3.8E-14 1.3E-18 115.6 10.7 129 187-323 11-144 (192)
126 3sb4_A Hypothetical leucine ri 99.5 9.4E-15 3.2E-19 129.5 5.8 95 210-308 225-320 (329)
127 2o6r_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 108.3 14.0 114 184-302 28-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.5 1.1E-13 3.8E-18 107.9 9.7 85 84-171 17-101 (149)
129 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 107.6 12.7 113 84-200 28-140 (177)
130 2wfh_A SLIT homolog 2 protein 99.5 4.4E-13 1.5E-17 109.3 12.8 109 185-299 32-140 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.9E-18 110.0 8.9 106 185-299 43-154 (176)
132 2wfh_A SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 107.3 12.5 110 84-198 31-140 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.4 9E-13 3.1E-17 105.8 11.2 108 85-195 43-151 (176)
134 1ds9_A Outer arm dynein; leuci 99.4 1.7E-14 5.9E-19 118.2 -0.9 19 80-98 14-32 (198)
135 3sb4_A Hypothetical leucine ri 99.4 3.5E-13 1.2E-17 119.4 7.4 230 51-292 48-328 (329)
136 3un9_A NLR family member X1; l 99.3 1.3E-13 4.4E-18 124.0 0.8 70 238-307 184-261 (372)
137 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 116.6 -3.4 132 128-274 43-185 (198)
138 3g39_A Variable lymphocyte rec 99.3 1.3E-11 4.6E-16 98.3 11.7 109 185-301 10-118 (170)
139 3un9_A NLR family member X1; l 99.3 9.5E-14 3.3E-18 124.8 -2.6 168 133-300 101-285 (372)
140 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 98.8 9.6 106 212-322 10-119 (170)
141 2r9u_A Variable lymphocyte rec 99.3 2.9E-11 9.8E-16 96.7 11.4 107 186-300 14-120 (174)
142 4fdw_A Leucine rich hypothetic 99.3 4.2E-11 1.4E-15 108.6 13.7 206 78-299 130-359 (401)
143 2r9u_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 95.6 10.9 107 55-174 15-121 (174)
144 4fdw_A Leucine rich hypothetic 99.2 7.7E-11 2.6E-15 106.9 13.6 213 72-298 168-383 (401)
145 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.8E-14 96.8 10.6 95 75-173 23-118 (347)
146 2ra8_A Uncharacterized protein 99.0 4.4E-10 1.5E-14 100.3 5.8 84 210-296 251-341 (362)
147 2ifg_A High affinity nerve gro 99.0 2.4E-09 8.1E-14 95.3 10.3 104 188-299 12-117 (347)
148 2ra8_A Uncharacterized protein 98.9 5.3E-10 1.8E-14 99.7 2.6 81 236-316 251-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.6 6.2E-09 2.1E-13 83.9 1.8 124 72-195 24-162 (185)
150 1io0_A Tropomodulin; LRR prote 98.6 8.7E-09 3E-13 83.0 2.3 120 180-299 32-165 (185)
151 4fs7_A Uncharacterized protein 98.6 1.5E-06 5E-11 78.6 15.3 236 52-309 71-366 (394)
152 3rw6_A Nuclear RNA export fact 98.4 1.2E-08 4.2E-13 86.5 -1.6 25 37-61 75-99 (267)
153 4gt6_A Cell surface protein; l 98.4 1.8E-06 6.2E-11 78.0 11.7 99 206-310 260-358 (394)
154 4fs7_A Uncharacterized protein 98.4 1.6E-06 5.6E-11 78.3 11.1 202 77-295 155-376 (394)
155 3e4g_A ATP synthase subunit S, 98.3 3.7E-07 1.3E-11 72.0 3.1 83 85-169 62-150 (176)
156 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 7.8E-11 67.5 5.0 85 110-195 62-150 (176)
157 3rw6_A Nuclear RNA export fact 98.1 1.6E-06 5.6E-11 73.4 4.4 83 107-190 168-257 (267)
158 4gt6_A Cell surface protein; l 98.1 8.8E-05 3E-09 66.9 14.8 109 179-296 260-368 (394)
159 4h09_A Hypothetical leucine ri 98.1 6.2E-05 2.1E-09 67.4 13.7 84 207-294 259-342 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.7E-10 63.3 3.0 88 211-298 70-170 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.5E-05 5E-10 64.1 1.9 93 75-167 32-135 (197)
162 4h09_A Hypothetical leucine ri 97.4 0.0017 5.7E-08 58.0 12.2 146 127-285 211-356 (379)
163 3rfe_A Platelet glycoprotein I 96.3 0.0069 2.4E-07 45.1 5.8 36 238-273 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.012 4E-07 43.8 6.8 37 110-146 32-68 (130)
165 2lz0_A Uncharacterized protein 59.0 16 0.00053 25.2 4.7 37 105-142 16-52 (100)
166 2lz0_A Uncharacterized protein 42.9 52 0.0018 22.4 5.3 48 71-120 7-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-39 Score=285.05 Aligned_cols=293 Identities=26% Similarity=0.361 Sum_probs=248.0
Q ss_pred cCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCcc--ccceEEcCCC--CcEEEEEcCCCCcccccCccccc--cc
Q 019237 3 MRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENARGKVLKG--TI 76 (344)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~~~~c~~~~--~~l~~l~l~~~~~~~~~~~~~~~--~~ 76 (344)
+.|.+.|++||++|++++.+|. ...+|+ .+.++|. |.|++|.... ++++.|+++++ .+.+ .+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~ 68 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPI 68 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEEC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCccc
Confidence 3699999999999999998876 678997 5778998 9999997544 89999999999 7888 89
Q ss_pred chhhhcCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhh
Q 019237 77 SPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLS 155 (344)
Q Consensus 77 ~~~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~ 155 (344)
|..+.++++|++|++++ |.+.+. +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+... .+..+.
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~ 146 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSIS 146 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGG
T ss_pred ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHh
Confidence 99999999999999995 888876 889999999999999999999999999999999999999999998832 236788
Q ss_pred cCCCCCEEEccccccCCCCchHHHHhhcc-cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh
Q 019237 156 HLSSLRHLDLSYINLTKSSDWFQVVAKLR-SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234 (344)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 234 (344)
.+++|++|++++|.+.+..+ ..+..++ .|++|++++|.+.+..+. .+..+. |++|++++|.+.+ ..+..+.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~--~~~~~~~ 218 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEG--DASVLFG 218 (313)
T ss_dssp GCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEE--CCGGGCC
T ss_pred cCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccC--cCCHHHh
Confidence 99999999999999874422 3677777 999999999998865543 234434 9999999999843 3445556
Q ss_pred ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----
Q 019237 235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG---- 310 (344)
Q Consensus 235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---- 310 (344)
.+++|+.|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|+.|+|++|.+++.+|.. ..+++
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 667999999999999866665 778899999999999999889999999999999999999999888875 44444
Q ss_pred cccccc-ccc
Q 019237 311 GCTMNS-LEG 319 (344)
Q Consensus 311 ~l~~n~-l~~ 319 (344)
++++|+ +.|
T Consensus 297 ~l~~N~~lc~ 306 (313)
T 1ogq_A 297 AYANNKCLCG 306 (313)
T ss_dssp GTCSSSEEES
T ss_pred HhcCCCCccC
Confidence 888888 444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-37 Score=306.44 Aligned_cols=313 Identities=25% Similarity=0.357 Sum_probs=181.0
Q ss_pred ccCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccc---cch
Q 019237 2 VMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGT---ISP 78 (344)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~---~~~ 78 (344)
++.+.+.|++||++|++++.||. ...+|+ .+++||.|.||+|+ .++|+.++|+++ .+.|. +|+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~ 71 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSS 71 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC--------CcCCccCccCh
Confidence 45567889999999999998888 889998 67899999999997 689999999998 55555 565
Q ss_pred hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCc--ccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237 79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR--PFQYLSGLVYLRLENSNLFSLGSLEWLSH 156 (344)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~ls~~~l~~~~~~~~l~~ 156 (344)
++.+++.|+.++++.+.+.. ++..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+........+..
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence 55555555555555554422 334455555555555555555554444 45555555555555554432221111234
Q ss_pred CCCCCEEEccccccCCCCchH-HHH----------------------hhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237 157 LSSLRHLDLSYINLTKSSDWF-QVV----------------------AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213 (344)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~-~~l----------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 213 (344)
+++|++|++++|.+....... ..+ ..+++|++|++++|.+.+..+. +..+++|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L 225 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF----LGDCSAL 225 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB----CTTCCSC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc----cccCCCC
Confidence 445555555555444332100 113 3444555555555554443331 3334555
Q ss_pred cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCC-CCCCEEeC
Q 019237 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM-CSLNRLFL 292 (344)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~L 292 (344)
++|++++|.+.+ . .+.....+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|+.|++
T Consensus 226 ~~L~Ls~n~l~~-~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 226 QHLDISGNKLSG-D-FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CEEECCSSCCCS-C-HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CEEECcCCcCCC-c-ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 555555555532 2 2222233345555555555555444433 45555555555555555566655543 77777777
Q ss_pred CCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
++|.+++.+|..+..++. ++++|+++|.+|.. ....+++|+.|+++
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-----~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----TLLKMRGLKVLDLS 351 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-----HHTTCTTCCEEECC
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-----HHhcCCCCCEEeCc
Confidence 777777777776666655 67777777666632 12357777777765
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-35 Score=287.16 Aligned_cols=280 Identities=17% Similarity=0.247 Sum_probs=208.5
Q ss_pred CHHHHHHHHHhHhhcccc-CCCC-------CCCCCCCCCCCCccc---cceEEcCCCCcEEEEEcCCCCcccccCccccc
Q 019237 6 IDEEREALLTFKQSMVDK-YGVL-------SSWGRDNDKRDCCKW---RGVRCSNKTGHVKVLNLRRSDDENARGKVLKG 74 (344)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~-~~~~-------~~w~~~~~~~~~c~~---~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~ 74 (344)
...|+.||.+|++++.++ +.+. ..|+ .+.++|.| .||+|+.. ++|+.|+|+++ .+.|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~--------~l~g 95 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGF--------GASG 95 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTS--------CCEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCc--------ccCC
Confidence 346899999999999544 3322 2798 57899999 99999644 89999999999 8889
Q ss_pred ccchhhhcCCCCCEEeCCCCCC------CC--------------------------------------------------
Q 019237 75 TISPALLKLHDLRHLDLSNNHF------GG-------------------------------------------------- 98 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~~~------~~-------------------------------------------------- 98 (344)
.+|++++++++|++|++++|.+ .+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 9999999999999999998843 00
Q ss_pred --------------------CCccccccCCCCCcEEEccCCcCCCc-----------------CCcccc--cCCCCcEEE
Q 019237 99 --------------------SPVPEFIGSLSRLRYLNLSCGTSLLK-----------------VPRPFQ--YLSGLVYLR 139 (344)
Q Consensus 99 --------------------~~~~~~l~~l~~L~~L~Ls~~~~~~~-----------------~~~~~~--~l~~L~~L~ 139 (344)
.++|..++++++|++|++++|.+.+. +|..+. ++++|++|+
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 01567788899999999999998875 899988 999999999
Q ss_pred ccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhhc------ccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKL------RSLKTLVLRSCALPPINPSFIWHFNLSTS 212 (344)
Q Consensus 140 ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 212 (344)
+++|.+.. ..+..+..+++|++|++++|. +.+. .++..+..+ ++|++|++++|.+...+. ...+..+++
T Consensus 256 L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~ 331 (636)
T 4eco_A 256 VYNCPNLT-KLPTFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKK 331 (636)
T ss_dssp EECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTT
T ss_pred ecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCC
Confidence 99998774 334778889999999999997 6541 123455554 899999999998885443 113555678
Q ss_pred ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCC-CCEEEccCCccCCCccccccCCC--CCCE
Q 019237 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS-LKSLHLTDNELEGGIPKFFGNMC--SLNR 289 (344)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~ 289 (344)
|++|++++|.+.+ .++ .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.
T Consensus 332 L~~L~L~~N~l~g-~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 332 LGMLECLYNQLEG-KLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp CCEEECCSCCCEE-ECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCEEeCcCCcCcc-chh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 8888888888853 444 2334457777777777777 66666777777 777777777776 5666555433 6666
Q ss_pred EeCCCCcCccccchHHh
Q 019237 290 LFLPHNKLSGELSEMIQ 306 (344)
Q Consensus 290 L~L~~n~l~~~~~~~~~ 306 (344)
|++++|.+++.+|..+.
T Consensus 407 L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EECCSSCTTTTTTCSSC
T ss_pred EECcCCcCCCcchhhhc
Confidence 66666666666555554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-33 Score=275.72 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHHhHhhccccCCCCCCCCCCC--CCCCC--ccc------------cceEEcCCCCcEEEEEcCCCCcccc
Q 019237 4 RCIDEEREALLTFKQSMVDKYGVLSSWGRDN--DKRDC--CKW------------RGVRCSNKTGHVKVLNLRRSDDENA 67 (344)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~~------------~~~~c~~~~~~l~~l~l~~~~~~~~ 67 (344)
.+...|++||++|++++.+| +|+... ...++ |.| .||.|+. .++|+.|+|+++
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~----- 333 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF----- 333 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT-----
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC-----
Confidence 34567899999999999776 776421 12344 999 9999964 689999999999
Q ss_pred cCcccccccchhhhcCCCCCEEeC-CCCCCCCC-----------------------------------------------
Q 019237 68 RGKVLKGTISPALLKLHDLRHLDL-SNNHFGGS----------------------------------------------- 99 (344)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~----------------------------------------------- 99 (344)
.+.|.+|++++++++|++|+| ++|.+.+.
T Consensus 334 ---~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 334 ---GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp ---CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ---CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 788999999999999999999 66632111
Q ss_pred ----------------------------CccccccCCCCCcEEEccCCcCCC-----------------cCCcccc--cC
Q 019237 100 ----------------------------PVPEFIGSLSRLRYLNLSCGTSLL-----------------KVPRPFQ--YL 132 (344)
Q Consensus 100 ----------------------------~~~~~l~~l~~L~~L~Ls~~~~~~-----------------~~~~~~~--~l 132 (344)
.+|..++++++|+.|+|++|.+.+ .+|..++ ++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 056678889999999999998887 3888877 89
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhhcc-------cCcEEEecCCCCCCCCCchh
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLR-------SLKTLVLRSCALPPINPSFI 204 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~~~ 204 (344)
++|++|++++|.+.. ..+..+..+++|++|++++|. +... .++..+..++ +|+.|++++|.+...+. .
T Consensus 491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~--~ 566 (876)
T 4ecn_A 491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA--S 566 (876)
T ss_dssp TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC--H
T ss_pred CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccCCccEEEeeCCcCCccCC--h
Confidence 999999999998764 233778889999999999987 6540 1233445444 88888888888874433 1
Q ss_pred hccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCC-CCEEEccCCccCCCccccccC
Q 019237 205 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS-LKSLHLTDNELEGGIPKFFGN 283 (344)
Q Consensus 205 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~ 283 (344)
..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred hhhhcCCCCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 13455678888888888773 344 3344557778888887777 67777777777 777777777777 56655544
Q ss_pred CCC--CCEEeCCCCcCcccc
Q 019237 284 MCS--LNRLFLPHNKLSGEL 301 (344)
Q Consensus 284 l~~--L~~L~L~~n~l~~~~ 301 (344)
++. |+.|+|++|.+++.+
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTS
T ss_pred cccCCCCEEECcCCcCCCcc
Confidence 432 555555555555443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-32 Score=245.05 Aligned_cols=274 Identities=18% Similarity=0.248 Sum_probs=211.8
Q ss_pred cCCCHHHHHHHHHhHhhc-cccCCCCCCCCCC-CCCCCCccccceEEc--------CCCCcEEEEEcCCCCcccccCccc
Q 019237 3 MRCIDEEREALLTFKQSM-VDKYGVLSSWGRD-NDKRDCCKWRGVRCS--------NKTGHVKVLNLRRSDDENARGKVL 72 (344)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~-~~~~~~c~~~~~~c~--------~~~~~l~~l~l~~~~~~~~~~~~~ 72 (344)
+.+...+++||.+|++.+ .++..+...|... ....++|.|.|+.|. ....+++.|+++++ .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------PL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--------CC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--------Cc
Confidence 456677899999999998 6787777889411 157789999999984 23478999999998 56
Q ss_pred ccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchh
Q 019237 73 KGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLE 152 (344)
Q Consensus 73 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~ 152 (344)
. .+|..+.++++|++|++++|.++. +|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.... +.
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~ 168 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL-PE 168 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC-CS
T ss_pred h-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc-Ch
Confidence 5 678888889999999999999883 8888889999999999988877 77888999999999999997655322 12
Q ss_pred hh---------hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237 153 WL---------SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223 (344)
Q Consensus 153 ~l---------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 223 (344)
.+ ..+++|++|++++|.+...+. .+..+++|++|++++|.+.+.++ .+..+++|++|++++|.+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcc
Confidence 23 348888888888888775543 57788888888888888876554 345567888888888877
Q ss_pred CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237 224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
.+ .++. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 242 ~~-~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LR-NYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CC-BCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hh-hhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 54 3333 3444557888888888877788888888888888888888888788888888888888888776655
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=9.5e-31 Score=257.93 Aligned_cols=257 Identities=28% Similarity=0.398 Sum_probs=219.0
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++.+++++| .+.+.+|..+.++++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..+..
T Consensus 394 ~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 394 NTLQELYLQNN--------GFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CCCCEEECCSS--------EEEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CCccEEECCCC--------ccccccCHHHhcCCCCCEEECcCCcccCc-ccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 34666666666 78888999999999999999999998876 8888999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+..++
T Consensus 465 l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~ 538 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPA---ELGDCR 538 (768)
T ss_dssp CTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCG---GGGGCT
T ss_pred CCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCH---HHcCCC
Confidence 999999999999988432 3678899999999999999886543 4678899999999999998865553 355668
Q ss_pred cccEEEcCCCCCCCCCCcchhhh---------------------------------------------------------
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFN--------------------------------------------------------- 234 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~--------------------------------------------------------- 234 (344)
+|++|++++|.+.+ .++..++.
T Consensus 539 ~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 539 SLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 99999999998754 44433321
Q ss_pred ------------ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 235 ------------LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 235 ------------~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
..+.|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..++.+++|+.|+|++|.++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 13468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccC----cccccccccccccc
Q 019237 303 EMIQNLSG----GCTMNSLEGVLEII 324 (344)
Q Consensus 303 ~~~~~l~~----~l~~n~l~~~~~~~ 324 (344)
..+..+.. ++++|+++|.+|..
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hHHhCCCCCCEEECcCCcccccCCCc
Confidence 99998877 99999999999954
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.3e-30 Score=242.17 Aligned_cols=292 Identities=24% Similarity=0.242 Sum_probs=189.4
Q ss_pred CCCccccc--eEEcCCC--------CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237 37 RDCCKWRG--VRCSNKT--------GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG 106 (344)
Q Consensus 37 ~~~c~~~~--~~c~~~~--------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 106 (344)
...|.|.+ +.|.... .++++|+++++ .+.+..|..+.++++|++|++++|.+.....+..+.
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~ 76 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence 34555544 6675332 67999999999 677777888999999999999999886541356788
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc-hhhhhcCCCCCEEEccccccCCCCchHHHHhhccc
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS-LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 185 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 185 (344)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+ ...+..+++
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~ 155 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRR 155 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTT
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCc
Confidence 89999999999999888888889999999999999998874211 1237788899999999998877643 123678889
Q ss_pred CcEEEecCCCCCCCCCchhhcc-------------------------------ccCCcccEEEcCCCCCCC---------
Q 019237 186 LKTLVLRSCALPPINPSFIWHF-------------------------------NLSTSIETLDLSDNNLPS--------- 225 (344)
Q Consensus 186 L~~L~l~~~~~~~~~~~~~~~~-------------------------------~~~~~L~~L~l~~n~l~~--------- 225 (344)
|++|++++|.+.+..+.....+ ..+++|++|++++|.+.+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 9999999888776544322111 122456666666665521
Q ss_pred ----------------------------------------------------CCCcchhhhccCCccEEEccCCcCcCCc
Q 019237 226 ----------------------------------------------------SSVYPWLFNLSRNILVLDLAFNSLRGSI 253 (344)
Q Consensus 226 ----------------------------------------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 253 (344)
....+..+..+++|++|++++|.+++..
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 0111222233345555555555555444
Q ss_pred hHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccccccccc
Q 019237 254 PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRA 329 (344)
Q Consensus 254 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~ 329 (344)
+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++ ++++|++++..+..
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----- 390 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI----- 390 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT-----
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH-----
Confidence 555555556666666666555444555555666666666666665555555555444 56666665533322
Q ss_pred ccccCCCCcceEec
Q 019237 330 GRKSMRPLDWIAIA 343 (344)
Q Consensus 330 ~~~~l~~L~~l~l~ 343 (344)
...+++|+.|+++
T Consensus 391 -~~~l~~L~~L~l~ 403 (455)
T 3v47_A 391 -FDRLTSLQKIWLH 403 (455)
T ss_dssp -TTTCTTCCEEECC
T ss_pred -hccCCcccEEEcc
Confidence 2356666666654
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.9e-28 Score=216.98 Aligned_cols=282 Identities=19% Similarity=0.227 Sum_probs=225.3
Q ss_pred CCCCccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237 36 KRDCCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG 106 (344)
Q Consensus 36 ~~~~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 106 (344)
....|.|+.+.|... .+.++.|+++++ .+++..+..+.++++|++|++++|.++.. .+..++
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 97 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFA 97 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTT
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCC--------cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhc
Confidence 334578888888531 257889999998 67776677899999999999999999875 588899
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 186 (344)
.+++|++|++++|.+. .+|..+. ++|++|++++|.+...+. ..+..+++|++|++++|.+.........+..+++|
T Consensus 98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 9999999999988876 4565554 799999999999986553 66889999999999999986532223467889999
Q ss_pred cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266 (344)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 266 (344)
++|++++|.+...+... .++|++|++++|.+. .+.+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 174 ~~L~l~~n~l~~l~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 174 SYIRIADTNITTIPQGL------PPSLTELHLDGNKIT--KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp CEEECCSSCCCSCCSSC------CTTCSEEECTTSCCC--EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CEEECCCCccccCCccc------cccCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 99999999998766421 279999999999994 3444555666799999999999997777789999999999
Q ss_pred EccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhc------cC----cccccccccccccccccccccccCCC
Q 019237 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL------SG----GCTMNSLEGVLEIIKSHRAGRKSMRP 336 (344)
Q Consensus 267 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~----~l~~n~l~~~~~~~~~~~~~~~~l~~ 336 (344)
++++|+++ .+|..+..+++|+.|++++|.+++..+..++.. .. ++++|++.... ........++.
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~----i~~~~f~~~~~ 320 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----IQPSTFRCVYV 320 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG----SCGGGGTTCCC
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc----cCccccccccc
Confidence 99999999 788889999999999999999997766666543 11 68888875311 11134557888
Q ss_pred CcceEec
Q 019237 337 LDWIAIA 343 (344)
Q Consensus 337 L~~l~l~ 343 (344)
|+.+++.
T Consensus 321 l~~l~L~ 327 (330)
T 1xku_A 321 RAAVQLG 327 (330)
T ss_dssp GGGEEC-
T ss_pred eeEEEec
Confidence 8888875
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=8.4e-29 Score=231.43 Aligned_cols=277 Identities=21% Similarity=0.237 Sum_probs=168.4
Q ss_pred CcEEEEEcCCCCccc----------------ccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEE
Q 019237 52 GHVKVLNLRRSDDEN----------------ARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLN 115 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~----------------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 115 (344)
..++.|+++++.+.. +.++.+.+..|..|.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence 467777777773321 111233333344444455555555555544432 222344455555555
Q ss_pred ccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC
Q 019237 116 LSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195 (344)
Q Consensus 116 Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 195 (344)
+++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+..... ..+..+++|+.|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCc
Confidence 55555444444445555555555555555443221 334555566666666665554432 345666666666666666
Q ss_pred CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
+....+ ..+..+++|+.|++++|...+ .+++...... +|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 188 i~~~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 188 INAIRD---YSFKRLYRLKVLEISHWPYLD-TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp CCEECT---TCSCSCTTCCEEEEECCTTCC-EECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CcEeCh---hhcccCcccceeeCCCCcccc-ccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 555433 234455677777777766543 3444444333 78888888888885555678888889999999888886
Q ss_pred CccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 276 GIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 276 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
..+..+..+++|+.|+|++|.+++..|..+..+++ ++++|++++..+... ..+++|+.|+++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~ 328 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF------HSVGNLETLILD 328 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB------SCGGGCCEEECC
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc------CCCcccCEEEcc
Confidence 66667888888888999888888777777777666 888888887655433 356777777765
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.4e-28 Score=221.55 Aligned_cols=266 Identities=20% Similarity=0.247 Sum_probs=185.5
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.++++++ .+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..
T Consensus 45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45666666666 55543344467788888888888877664 4456777888888888888777777777777
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc----
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF---- 207 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 207 (344)
+++|++|++++|.+...+. ..+..+++|++|++++|.+..... ..+..+++|++|++++|.+..........+
T Consensus 116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcCCccccccccccceee
Confidence 8888888888887775553 335677788888888887766543 346677778888887777665432110000
Q ss_pred ------------------------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237 208 ------------------------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257 (344)
Q Consensus 208 ------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 257 (344)
...++|+.|++++|.+.+ .+ ....+++|++|++++|.+++..|..+
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TA-WLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---CG-GGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---cH-HHcCCCCccEEECCCCcCCCcChhHc
Confidence 011356666666666633 12 33455688999999998887778888
Q ss_pred hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccccccccccccc
Q 019237 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKS 333 (344)
Q Consensus 258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~ 333 (344)
..+++|++|++++|+++ .++..+..+++|+.|++++|.++ .+|..+..++. ++++|+++.. + ...
T Consensus 269 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--------~~~ 337 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--------LST 337 (390)
T ss_dssp TTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--------CCT
T ss_pred cccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--------chh
Confidence 88889999999999888 56666777889999999999888 45655665555 8888888654 2 346
Q ss_pred CCCCcceEecC
Q 019237 334 MRPLDWIAIAY 344 (344)
Q Consensus 334 l~~L~~l~l~~ 344 (344)
+++|+.|++++
T Consensus 338 ~~~L~~L~l~~ 348 (390)
T 3o6n_A 338 HHTLKNLTLSH 348 (390)
T ss_dssp TCCCSEEECCS
T ss_pred hccCCEEEcCC
Confidence 78888888753
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-28 Score=218.45 Aligned_cols=277 Identities=19% Similarity=0.234 Sum_probs=221.8
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCC
Q 019237 38 DCCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSL 108 (344)
Q Consensus 38 ~~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 108 (344)
..|.|..+.|... .++++.|+++++ .+.+..|..+.++++|++|++++|.++.. .+..++.+
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 101 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPL 101 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCc
Confidence 3478998888532 257899999998 67766677899999999999999999875 57889999
Q ss_pred CCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcE
Q 019237 109 SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 188 (344)
Q Consensus 109 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 188 (344)
++|++|++++|.+. .+|..+. ++|++|++++|.+...+. ..+..+++|++|++++|.+.........+..+ +|+.
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 99999999988876 5565554 799999999999987654 56888999999999999886421112345555 8999
Q ss_pred EEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEc
Q 019237 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHL 268 (344)
Q Consensus 189 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 268 (344)
|++++|.+...+... .++|++|++++|.+. .+.+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 177 L~l~~n~l~~l~~~~------~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 177 LRISEAKLTGIPKDL------PETLNELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CBCCSSBCSSCCSSS------CSSCSCCBCCSSCCC--CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred EECcCCCCCccCccc------cCCCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 999999998866521 278999999999994 444445556679999999999999877888999999999999
Q ss_pred cCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc---------C-cccccccc--cccccccccccccccCCC
Q 019237 269 TDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS---------G-GCTMNSLE--GVLEIIKSHRAGRKSMRP 336 (344)
Q Consensus 269 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---------~-~l~~n~l~--~~~~~~~~~~~~~~~l~~ 336 (344)
++|+++ .+|..+..+++|+.|++++|.+++..+..++... . ++++|++. +..|. ....++.
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------~~~~l~~ 321 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------TFRCVTD 321 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG------GGTTBCC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc------cccccch
Confidence 999999 7888899999999999999999977666666542 1 78888876 33343 3447888
Q ss_pred CcceEec
Q 019237 337 LDWIAIA 343 (344)
Q Consensus 337 L~~l~l~ 343 (344)
|+.+++.
T Consensus 322 L~~l~l~ 328 (332)
T 2ft3_A 322 RLAIQFG 328 (332)
T ss_dssp STTEEC-
T ss_pred hhhhhcc
Confidence 8888875
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.3e-29 Score=232.00 Aligned_cols=134 Identities=21% Similarity=0.188 Sum_probs=107.7
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
+|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .+.+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 276 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEIN--KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CCCEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred CceEEEecCccccccch---hhcccCCCCCEEECCCCccc--ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 44444444444444332 23566689999999999994 44454556667999999999999978889999999999
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEI 323 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~ 323 (344)
+|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++ ++++|++++..|.
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999777889999999999999999999766666666666 9999999999884
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=231.09 Aligned_cols=266 Identities=20% Similarity=0.181 Sum_probs=210.8
Q ss_pred cccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC
Q 019237 64 DENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS 143 (344)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~ 143 (344)
..++.++.+.+..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 346777788877788888999999999999988775 5777888899999999988877666667788899999999999
Q ss_pred CCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223 (344)
Q Consensus 144 ~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 223 (344)
.+..... ..+..+++|++|++++|.+..... ..+..+++|++|++++|.+...+. ..+..+++|+.|++++|.+
T Consensus 115 ~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 115 KIVILLD-YMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CCCEECT-TTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEEEEESCCC
T ss_pred ccccCCh-hHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEEeCCCCcC
Confidence 8875432 567788899999999988776543 356788899999999998877654 2456668899999999888
Q ss_pred CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccch
Q 019237 224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE 303 (344)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (344)
. .+.+..+..+++|++|++++|.+.+.++.......+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+.
T Consensus 189 ~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 189 N--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp C--EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred c--EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 3 44454556667899999999887777776666667899999999999854446788999999999999999977777
Q ss_pred HHhhccC----cccccccccccccccccccccccCCCCcceEecC
Q 019237 304 MIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY 344 (344)
Q Consensus 304 ~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~ 344 (344)
.+..+++ ++++|++++..|... ..+++|+.|+|++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~ 305 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAF------RGLNYLRVLNVSG 305 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTB------TTCTTCCEEECCS
T ss_pred hccccccCCEEECCCCccceECHHHh------cCcccCCEEECCC
Confidence 7777666 899999998777544 3788999998863
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.1e-28 Score=230.67 Aligned_cols=265 Identities=20% Similarity=0.243 Sum_probs=189.7
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
.++.++++++ .+....+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..|..|+.+
T Consensus 52 ~l~~l~l~~~--------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESSC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeCC--------CCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 3455555555 66554455567788888888888887764 44577778888888888888777777777888
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc-----
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF----- 207 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----- 207 (344)
++|++|++++|.+...+. ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+.+......+
T Consensus 123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence 888888888888775553 345677888888888887766543 356777788888888877765432110000
Q ss_pred -----------------------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhh
Q 019237 208 -----------------------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258 (344)
Q Consensus 208 -----------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 258 (344)
...++|+.|++++|.+.+ ++ ....+++|+.|++++|.+++..|..+.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TA-WLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---CG-GGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---Ch-hhccCCCCCEEECCCCccCCCCHHHhc
Confidence 011346666666666643 22 344556899999999999888888888
Q ss_pred cCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccC
Q 019237 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM 334 (344)
Q Consensus 259 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l 334 (344)
.+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..++. ++++|.+++.. ...+
T Consensus 276 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~ 344 (597)
T 3oja_B 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---------LSTH 344 (597)
T ss_dssp TCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---------CCTT
T ss_pred CccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---------hhhc
Confidence 8999999999999988 46777778899999999999988 56766766666 89999887642 3467
Q ss_pred CCCcceEecC
Q 019237 335 RPLDWIAIAY 344 (344)
Q Consensus 335 ~~L~~l~l~~ 344 (344)
+.|+.|++++
T Consensus 345 ~~L~~L~l~~ 354 (597)
T 3oja_B 345 HTLKNLTLSH 354 (597)
T ss_dssp CCCSEEECCS
T ss_pred CCCCEEEeeC
Confidence 8888888763
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.9e-28 Score=231.76 Aligned_cols=271 Identities=21% Similarity=0.198 Sum_probs=156.3
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
.++.++++++ .+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..|..+..+
T Consensus 255 ~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKH--------YFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTC--------CCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecC--------ccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 5777777777 4444444556666666666666666653 55555666666666666666555555555555
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH------------------------HHHhhcccCcE
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF------------------------QVVAKLRSLKT 188 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------------------~~l~~~~~L~~ 188 (344)
++|++|++++|.+........+..+++|++|++++|.+....... ..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 555555555555442111123444555555555555444332111 23344455555
Q ss_pred EEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC---chHhhhcCCCCCE
Q 019237 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS---IPEAFQHMVSLKS 265 (344)
Q Consensus 189 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~~~~L~~ 265 (344)
|++++|.+.+..+ ...+..+++|++|++++|.+. ...+..+..+++|++|++++|.+++. .+..+..+++|+.
T Consensus 405 L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 405 LDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp EECTTCCEECCTT--CCTTTTCTTCCEEECTTCCCB--TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred EECCCCcCCCccc--chhhhCcccCCEEECCCCccC--CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 5555554443322 112344466666666666663 23333344455677777777766642 2245666777777
Q ss_pred EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC---cccccccccccccccccccccccCCCCcceEe
Q 019237 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG---GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI 342 (344)
Q Consensus 266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l 342 (344)
|++++|++++..|..+..+++|+.|+|++|.+++..|..+..++. ++++|++++..|.... .+++|+.+++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~------~l~~L~~L~l 554 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP------ILSQQRTINL 554 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHH------HHHTSSEEEC
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcc------cCCCCCEEeC
Confidence 777777777655666777777777777777777777777766665 6777777766654332 5667777776
Q ss_pred c
Q 019237 343 A 343 (344)
Q Consensus 343 ~ 343 (344)
.
T Consensus 555 ~ 555 (606)
T 3t6q_A 555 R 555 (606)
T ss_dssp T
T ss_pred C
Confidence 5
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.2e-28 Score=233.29 Aligned_cols=247 Identities=21% Similarity=0.221 Sum_probs=185.0
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcC--CcccccCCCCcEEEccCCCCCCC
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV--PRPFQYLSGLVYLRLENSNLFSL 148 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~l~~L~~L~ls~~~l~~~ 148 (344)
.+.+..|..+..+++|++|++++|.+.....+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+...
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 4444445556666666666666665553312233566666777777766665544 55666777777777777776543
Q ss_pred CchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCC
Q 019237 149 GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSV 228 (344)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (344)
. +..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+..+
T Consensus 392 ~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 392 K-TEAFKECPQLELLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp C-TTTTTTCTTCSEEECTTCCEECCTT-CCTTTTCTTCCEEECTTCCCBTTCTT---TTTTCTTCCEEECTTCBCGGGEE
T ss_pred C-HHHhcCCccCCeEECCCCcCCCccc-chhhhCcccCCEEECCCCccCCcCHH---HHhCCCCCCEEECCCCCCCcccc
Confidence 2 2556778888888888888765532 12467899999999999998876653 35667999999999999854112
Q ss_pred c-chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237 229 Y-PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307 (344)
Q Consensus 229 ~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 307 (344)
+ ......+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..++.| .|++++|.+++..|..+..
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence 1 1345566799999999999998889999999999999999999998889999999999 9999999999888887777
Q ss_pred ccC----ccccccccccccc
Q 019237 308 LSG----GCTMNSLEGVLEI 323 (344)
Q Consensus 308 l~~----~l~~n~l~~~~~~ 323 (344)
+++ ++++|++.+..+.
T Consensus 546 l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 546 LSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp HHTSSEEECTTCCEECSGGG
T ss_pred CCCCCEEeCCCCCccccCCc
Confidence 666 9999999887663
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.9e-28 Score=216.53 Aligned_cols=242 Identities=23% Similarity=0.332 Sum_probs=204.4
Q ss_pred CCCCEEeCCCCCCCC--CCccccccCCCCCcEEEccC-CcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCC
Q 019237 84 HDLRHLDLSNNHFGG--SPVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSL 160 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L 160 (344)
..++.|+++++.+.+ . ++..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+... .+..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence 468999999999987 5 888999999999999995 899999999999999999999999999732 22678899999
Q ss_pred CEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC-cccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST-SIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
++|++++|.+....+ ..+..+++|++|++++|.+.+..+. .+..+. +|++|++++|.+.+ .++..+ ... .|
T Consensus 128 ~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~-~~~~~~-~~l-~L 199 (313)
T 1ogq_A 128 VTLDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTG-KIPPTF-ANL-NL 199 (313)
T ss_dssp CEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEE-ECCGGG-GGC-CC
T ss_pred CEEeCCCCccCCcCC--hHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeec-cCChHH-hCC-cc
Confidence 999999999985533 4788999999999999999854442 234445 89999999999954 444443 444 49
Q ss_pred cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccc
Q 019237 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMN 315 (344)
Q Consensus 240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n 315 (344)
++|++++|.+++..+..+..+++|+.|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++ ++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 9999999999999999999999999999999999966665 788999999999999999999999988877 99999
Q ss_pred ccccccccccccccccccCCCCcceEec
Q 019237 316 SLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
+++|.+|.. ..+++|+.+++.
T Consensus 279 ~l~~~ip~~-------~~l~~L~~l~l~ 299 (313)
T 1ogq_A 279 NLCGEIPQG-------GNLQRFDVSAYA 299 (313)
T ss_dssp EEEEECCCS-------TTGGGSCGGGTC
T ss_pred cccccCCCC-------ccccccChHHhc
Confidence 999998854 356666666553
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.9e-27 Score=227.39 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=66.7
Q ss_pred cccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCC
Q 019237 70 KVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLG 149 (344)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~ 149 (344)
+.+.+..|..|.++++|++|++++|.++.. .|..++.+++|++|++++|.+.+..+..++++.+|++|++++|.+....
T Consensus 66 n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 66 CEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 355555566677777777777777777664 4666667777777777766666555556666667777777776666544
Q ss_pred chhhhhcCCCCCEEEccccccCC
Q 019237 150 SLEWLSHLSSLRHLDLSYINLTK 172 (344)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~~~~~~ 172 (344)
.+..+..+++|++|++++|.+..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCE
T ss_pred chHhHhhcCCCCEEEccCCccee
Confidence 44556667777777776665543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=7.3e-27 Score=207.93 Aligned_cols=266 Identities=18% Similarity=0.133 Sum_probs=215.2
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
+++.++++++ .+. .+|..+. +.+++|++++|.++.. .+..++.+++|++|++++|.+.+..|..+..+
T Consensus 32 ~l~~l~~~~~--------~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDL--------GLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTS--------CCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCeEEEecCC--------Ccc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 4678899887 333 3454433 5899999999999885 45578999999999999999998889999999
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS 212 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 212 (344)
++|++|++++|.+...+. . ..++|++|++++|.+..... ..+..+++|++|++++|.+...... ...+..+++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~--~--~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~ 172 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPE--K--MPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKK 172 (330)
T ss_dssp TTCCEEECCSSCCSBCCS--S--CCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTT
T ss_pred CCCCEEECCCCcCCccCh--h--hcccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcC-hhhccCCCC
Confidence 999999999999986653 2 23799999999999887653 5688999999999999988642111 234566799
Q ss_pred ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292 (344)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 292 (344)
|++|++++|.+. .++..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 173 L~~L~l~~n~l~--~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 173 LSYIRIADTNIT--TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CCEEECCSSCCC--SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred cCEEECCCCccc--cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 999999999983 4554433 58999999999999877899999999999999999999766778899999999999
Q ss_pred CCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
++|.++ .+|..+..++. ++++|++++..+..+.........+.|+.+++.
T Consensus 248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 999999 77888887766 899999998777555433333446777777764
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.3e-27 Score=227.11 Aligned_cols=286 Identities=22% Similarity=0.266 Sum_probs=198.8
Q ss_pred CccccceEEcCC-----------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccC
Q 019237 39 CCKWRGVRCSNK-----------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGS 107 (344)
Q Consensus 39 ~c~~~~~~c~~~-----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 107 (344)
.|.|.++ |+.. ...+++|+++++ .+.+..|..+.++++|++|++++|.++.. .+..++.
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 4777776 6422 247999999999 67777788899999999999999999875 5677899
Q ss_pred CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237 108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187 (344)
Q Consensus 108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 187 (344)
+++|++|++++|.+.+..+..+..+++|++|++++|.+...+.+..+..+++|++|++++|......+ ...+..+++|+
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~ 151 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLN 151 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccC
Confidence 99999999999998887777799999999999999999866555668889999999999997433211 13577888999
Q ss_pred EEEecCCCCCCCCCchhhc---------------------cccCCcccEEEcCCCCCCCCCCcc-hh-------------
Q 019237 188 TLVLRSCALPPINPSFIWH---------------------FNLSTSIETLDLSDNNLPSSSVYP-WL------------- 232 (344)
Q Consensus 188 ~L~l~~~~~~~~~~~~~~~---------------------~~~~~~L~~L~l~~n~l~~~~~~~-~~------------- 232 (344)
+|++++|.+.+..+..... +..+++|++|++++|.+.+..+.+ .+
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 9999998887643321111 123577888888888774411000 00
Q ss_pred --------------------------------------------------------------------------hhccCC
Q 019237 233 --------------------------------------------------------------------------FNLSRN 238 (344)
Q Consensus 233 --------------------------------------------------------------------------~~~~~~ 238 (344)
.....+
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 011124
Q ss_pred ccEEEccCCcCcCCchHhh-hcCCCCCEEEccCCccCCCcc---ccccCCCCCCEEeCCCCcCccccc--hHHhhccC--
Q 019237 239 ILVLDLAFNSLRGSIPEAF-QHMVSLKSLHLTDNELEGGIP---KFFGNMCSLNRLFLPHNKLSGELS--EMIQNLSG-- 310 (344)
Q Consensus 239 L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~-- 310 (344)
|+.|++++|.++ .+|..+ ..+++|+.|++++|++++.+| ..+..+++|+.|++++|.+++..+ ..+..+++
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 555555555555 444444 567888888888888876553 336677888888888888875432 34555555
Q ss_pred --cccccccccccccccccccccccCCCCcceEec
Q 019237 311 --GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 311 --~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
++++|++++ +|. ....+++|+.|+++
T Consensus 391 ~L~Ls~N~l~~-lp~------~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 391 SLDISRNTFHP-MPD------SCQWPEKMRFLNLS 418 (549)
T ss_dssp EEECTTCCCCC-CCS------CCCCCTTCCEEECT
T ss_pred EEECCCCCCcc-CCh------hhcccccccEEECC
Confidence 788888874 332 12344555555543
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=233.32 Aligned_cols=285 Identities=21% Similarity=0.195 Sum_probs=151.1
Q ss_pred ccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc-cccccCCCCCcEEEccC
Q 019237 40 CKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV-PEFIGSLSRLRYLNLSC 118 (344)
Q Consensus 40 c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~Ls~ 118 (344)
|.|..+.+ ..++++.|||++| .+.+..|..+.++++|++|++++|..... + +..+.++++|++|++++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCC
Confidence 34444444 3467888888888 44444455555555555555555533322 2 34455555555555555
Q ss_pred CcCCCcCCcccccCCCCcEEEccCCCCCCC-CchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237 119 GTSLLKVPRPFQYLSGLVYLRLENSNLFSL-GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197 (344)
Q Consensus 119 ~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 197 (344)
|.+.+..|..|..+++|++|++++|.+... +....+..+++|++|++++|.+..... ...+..+++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCC
Confidence 555555555555555555555555555431 111124445555555555555444321 123445555555555555444
Q ss_pred CCCCchhhc-----------------------cccC------CcccEEEcCCCCCCCCCCcchhhhc-------------
Q 019237 198 PINPSFIWH-----------------------FNLS------TSIETLDLSDNNLPSSSVYPWLFNL------------- 235 (344)
Q Consensus 198 ~~~~~~~~~-----------------------~~~~------~~L~~L~l~~n~l~~~~~~~~~~~~------------- 235 (344)
+..+..... +..+ .+|+.|++++|.+.+ ..+..+...
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-hHHHHHHhhcCcccccceeccc
Confidence 332211100 1111 136777777765532 121111110
Q ss_pred ------------------------cCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 236 ------------------------SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 236 ------------------------~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
.++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 13567777777776655566666677777777777777655566666677777777
Q ss_pred CCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
|++|.+++..|..+.++++ ++++|++.+..+... ..+++|+.|+++
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls 370 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLR 370 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEE
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECC
Confidence 7777776665666665555 667776655544322 245666666554
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.3e-27 Score=229.00 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=129.7
Q ss_pred ccc-ccchhhhcC------CCCCEEeCCCCCCCCCCccc--cccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccC
Q 019237 72 LKG-TISPALLKL------HDLRHLDLSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN 142 (344)
Q Consensus 72 ~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~ 142 (344)
+++ .+|..++.+ ++|++|++++|.++. +|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 555 566666554 666666666666662 555 66677777777777776666666 666666677777777
Q ss_pred CCCCCCCchhhhhcCCC-CCEEEccccccCCCCchHHHHhh--cccCcEEEecCCCCCCCCCchhhc----cccCCcccE
Q 019237 143 SNLFSLGSLEWLSHLSS-LRHLDLSYINLTKSSDWFQVVAK--LRSLKTLVLRSCALPPINPSFIWH----FNLSTSIET 215 (344)
Q Consensus 143 ~~l~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~L~~ 215 (344)
|.+...+ ..+..+++ |++|++++|.+...+. .+.. +++|+.|++++|.+.+..+..... .-.+.+|++
T Consensus 363 N~l~~lp--~~l~~l~~~L~~L~Ls~N~l~~lp~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 363 NQITEIP--ANFCGFTEQVENLSFAHNKLKYIPN---IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp SEEEECC--TTSEEECTTCCEEECCSSCCSSCCS---CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred Ccccccc--HhhhhhcccCcEEEccCCcCcccch---hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 6666333 44666777 7777777777664432 2232 235666666666665543321110 002346666
Q ss_pred EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHh-hhcC-------CCCCEEEccCCccCCCcccccc--CCC
Q 019237 216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA-FQHM-------VSLKSLHLTDNELEGGIPKFFG--NMC 285 (344)
Q Consensus 216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~~-------~~L~~L~l~~n~~~~~~~~~l~--~l~ 285 (344)
|++++|.+ ..++..++..+++|++|++++|.++ .+|.. +... ++|+.|++++|+++ .+|..+. .++
T Consensus 438 L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 438 INLSNNQI--SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp EECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred EECcCCcc--CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence 66666666 2455555554556666666666665 33322 2211 15666666666655 4555554 556
Q ss_pred CCCEEeCCCCcCccccchHHhhccC
Q 019237 286 SLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 286 ~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
+|+.|+|++|.+++ +|..+..+++
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred CcCEEECCCCCCCC-cChhhhcCCC
Confidence 66666666666654 5555555444
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.8e-26 Score=224.89 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=83.2
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.|+++++ .+.+..+..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+....+..|.+
T Consensus 25 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 56788888887 44444444556666666666666655554 4455555666666666655555444344555
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+...+. ..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+...... .++
T Consensus 96 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIF-ANS 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCHHHHGGG-TTC
T ss_pred CCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCHHHhhcc-ccc
Confidence 5666666666655554332 334555555555555555544321 233445555555555555544332111111 124
Q ss_pred cccEEEcCCCCC
Q 019237 212 SIETLDLSDNNL 223 (344)
Q Consensus 212 ~L~~L~l~~n~l 223 (344)
+|++|++++|.+
T Consensus 172 ~L~~L~L~~n~l 183 (680)
T 1ziw_A 172 SLKKLELSSNQI 183 (680)
T ss_dssp EESEEECTTCCC
T ss_pred cccEEECCCCcc
Confidence 455555555544
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.4e-27 Score=207.10 Aligned_cols=270 Identities=22% Similarity=0.243 Sum_probs=210.1
Q ss_pred CCccccceEEcCCC---------CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCC-ccccccC
Q 019237 38 DCCKWRGVRCSNKT---------GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSP-VPEFIGS 107 (344)
Q Consensus 38 ~~c~~~~~~c~~~~---------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~ 107 (344)
-.|.|.++.|.... ..++.|+++++ .+....+..+.++++|++|++++|.++... .+..+..
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n--------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESN--------KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC--------ccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 34889999996422 57999999998 566444445789999999999999987521 2456667
Q ss_pred CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237 108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187 (344)
Q Consensus 108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 187 (344)
+++|++|++++|.+. .+|..+..+++|++|++++|.+...+....+..+++|++|++++|.+..... ..+..+++|+
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~ 153 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLE 153 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--TTTTTCTTCC
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--hhcccCcCCC
Confidence 999999999988776 4666788999999999999998877654568889999999999998876543 4577889999
Q ss_pred EEEecCCCCCC-CCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237 188 TLVLRSCALPP-INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266 (344)
Q Consensus 188 ~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 266 (344)
+|++++|.+.+ ..+ ..+..+++|++|++++|.+. .+.+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 154 ~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 154 VLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp EEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred EEECCCCccccccch---hHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 99999998765 222 24566789999999999984 4445555566799999999999997777788899999999
Q ss_pred EccCCccCCCccccccCCC-CCCEEeCCCCcCcccc-----chHHhhccC-ccccccccccccc
Q 019237 267 HLTDNELEGGIPKFFGNMC-SLNRLFLPHNKLSGEL-----SEMIQNLSG-GCTMNSLEGVLEI 323 (344)
Q Consensus 267 ~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~-----~~~~~~l~~-~l~~n~l~~~~~~ 323 (344)
++++|++++..+..+..++ +|+.|+|++|.++... +.++.+... .+..+.+....|.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9999999988888888885 9999999999998653 233333333 4455666665553
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-27 Score=211.07 Aligned_cols=250 Identities=22% Similarity=0.307 Sum_probs=194.0
Q ss_pred CCCCCccccceEEcCC-----------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccc
Q 019237 35 DKRDCCKWRGVRCSNK-----------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPE 103 (344)
Q Consensus 35 ~~~~~c~~~~~~c~~~-----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 103 (344)
.+...|.|.++ |+.. ..+++.|+++++ .+++..+..+.++++|++|++++|.++.. .+.
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 94 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN--------RITYISNSDLQRCVNLQALVLTSNGINTI-EED 94 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTT
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC--------cCcccCHHHhccCCCCCEEECCCCccCcc-CHh
Confidence 56678999876 5421 247899999998 66665566899999999999999999875 566
Q ss_pred cccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhh
Q 019237 104 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAK 182 (344)
Q Consensus 104 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~ 182 (344)
.++.+++|++|++++|.+.+..+..+..+++|++|++++|.+...+....+..+++|++|++++|. +..... ..+..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 172 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAG 172 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHccC
Confidence 789999999999999988865555588999999999999999876643467889999999999984 444432 36788
Q ss_pred cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC----------
Q 019237 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS---------- 252 (344)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---------- 252 (344)
+++|++|++++|.+.+..+. .+..+++|++|++++|.+ ..++..+....++|+.|++++|.+++.
T Consensus 173 l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp CCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 99999999999998876542 455668999999999998 456666666677899999999988752
Q ss_pred ---------------------chHhhhcCCCCCEEEccCCccCCCcccc-ccCCCCCCEEeCCCCcCccccc
Q 019237 253 ---------------------IPEAFQHMVSLKSLHLTDNELEGGIPKF-FGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 253 ---------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+++..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 3556667777888888888777 45544 4677788888888887776654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1e-26 Score=223.55 Aligned_cols=139 Identities=22% Similarity=0.164 Sum_probs=119.9
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
..+++.|+++++ .+.+..+..|.++++|++|++++|.++.. .+..|+.+++|++|++++|.+.+..|..|.
T Consensus 31 ~~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFN--------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCC--------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 367999999999 77777777999999999999999999875 577889999999999999999998899999
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN 200 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 200 (344)
++++|++|++++|.+...+. ..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+.+..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecC
Confidence 99999999999999987664 44889999999999999987632 1246888999999999988776543
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=6e-27 Score=208.65 Aligned_cols=263 Identities=21% Similarity=0.163 Sum_probs=212.6
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 132 (344)
+++.++++++ .++ .+|..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+
T Consensus 34 ~l~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDL--------GLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCC--------Ccc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 4678999987 443 4555443 6899999999999874 46688999999999999999998889999999
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC--CCCchhhccccC
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP--INPSFIWHFNLS 210 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~ 210 (344)
++|++|++++|.+...+. .+ .++|++|++++|.+..... ..+..+++|++|++++|.+.. ..+ ..+..+
T Consensus 102 ~~L~~L~L~~n~l~~l~~--~~--~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l 172 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPP--NL--PSSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL 172 (332)
T ss_dssp TTCCEEECCSSCCCSCCS--SC--CTTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC
T ss_pred CCCCEEECCCCcCCccCc--cc--cccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCc---ccccCC
Confidence 999999999999986653 22 2899999999999987754 457889999999999999864 222 234454
Q ss_pred CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL 290 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 290 (344)
+|++|++++|.+. .++..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 173 -~L~~L~l~~n~l~--~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 173 -KLNYLRISEAKLT--GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp -CCSCCBCCSSBCS--SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred -ccCEEECcCCCCC--ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 8999999999994 4554433 589999999999998878899999999999999999997777789999999999
Q ss_pred eCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 291 FLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 291 ~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
++++|.++ .+|..+..++. ++++|++++..+............+.|+.+++.
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 99999999 78888888776 999999988766444322222335667777764
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.5e-26 Score=227.97 Aligned_cols=239 Identities=17% Similarity=0.184 Sum_probs=115.2
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCC-CCC-CCccccccCC-------CCCcEEEccCCcC
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNH-FGG-SPVPEFIGSL-------SRLRYLNLSCGTS 121 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~l~~l-------~~L~~L~Ls~~~~ 121 (344)
..+++.|+|++| .+.+.+|..++++++|++|++++|. +++ . +|..++.+ ++|++|++++|.+
T Consensus 490 L~~L~~L~Ls~N--------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 490 LKDLTDVELYNC--------PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp CTTCCEEEEESC--------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCCCCEEECcCC--------CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcC
Confidence 356777777777 4555555555555555555555555 443 2 34333322 2555555555544
Q ss_pred CCcCCc--ccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhccc-CcEEEecCCCCC-
Q 019237 122 LLKVPR--PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS-LKTLVLRSCALP- 197 (344)
Q Consensus 122 ~~~~~~--~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~- 197 (344)
. .+|. .+.++++|++|++++|.+...+ .+..+++|++|++++|.+...+ ..+..+++ |+.|++++|.+.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSCCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCCCCc
Confidence 4 4444 4555555555555555544222 3344444444444444444222 12334444 444444444433
Q ss_pred ------------------------CCCCchhhccc--cCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237 198 ------------------------PINPSFIWHFN--LSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251 (344)
Q Consensus 198 ------------------------~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 251 (344)
+..+.+..... ...+|+.|++++|.+ ..++..++..+++|+.|++++|.++
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCC-
Confidence 32221110000 112455555555555 2344444444445666666666555
Q ss_pred CchHhhhc--------CCCCCEEEccCCccCCCcccccc--CCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 252 SIPEAFQH--------MVSLKSLHLTDNELEGGIPKFFG--NMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 252 ~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
.+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 33332211 125566666666555 4555554 55666666666666654 4555554444
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.8e-25 Score=199.04 Aligned_cols=251 Identities=24% Similarity=0.364 Sum_probs=163.1
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
.++++.++++++. +.+ ++. +..+++|++|++++|.++. + +.+..+++|++|++++|.+....+ +.
T Consensus 65 ~~~L~~L~l~~n~--------i~~-~~~-~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGNQ--------ITD-ISP-LSNLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp CTTCCEEECCSSC--------CCC-CGG-GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred cCCccEEEccCCc--------ccc-chh-hhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccCchh--hc
Confidence 3568888888873 332 222 5666666666666666554 2 235556666666666555543222 44
Q ss_pred cCCCCcEEEccCC-----------------------CCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237 131 YLSGLVYLRLENS-----------------------NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187 (344)
Q Consensus 131 ~l~~L~~L~ls~~-----------------------~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 187 (344)
.+++|++|++++| .+...+. +..+++|++|++++|.+..... +..+++|+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~ 202 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP----LASLTSLH 202 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGG----GGGCTTCC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCccccccc----ccCCCccc
Confidence 5555555555555 4332221 4444555555555554444321 44555555
Q ss_pred EEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEE
Q 019237 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267 (344)
Q Consensus 188 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 267 (344)
.|++++|.+.+..+ +..+++|++|++++|.+.. +++ ...+++|++|++++|.+++ + ..+..+++|+.|+
T Consensus 203 ~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 203 YFTAYVNQITDITP-----VANMTRLNSLKIGNNKITD--LSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp EEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred eeecccCCCCCCch-----hhcCCcCCEEEccCCccCC--Ccc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 55555555544322 4455788888888888843 333 4555689999999998884 3 4577889999999
Q ss_pred ccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 268 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
+++|.+++ + ..+..+++|+.|++++|.+++..|..+..+++ ++++|++++..| ...+++|+.|+++
T Consensus 272 l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 272 VGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--------LASLSKMDSADFA 341 (347)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEESSS
T ss_pred ccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--------hhhhhccceeehh
Confidence 99999885 4 34778899999999999999888888888777 899999988766 2368888888876
Q ss_pred C
Q 019237 344 Y 344 (344)
Q Consensus 344 ~ 344 (344)
+
T Consensus 342 ~ 342 (347)
T 4fmz_A 342 N 342 (347)
T ss_dssp C
T ss_pred h
Confidence 3
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=8e-26 Score=213.46 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=69.7
Q ss_pred ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC--CchHhhhcCCCCCEEEccCCccCCCcccc-ccCC
Q 019237 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG--SIPEAFQHMVSLKSLHLTDNELEGGIPKF-FGNM 284 (344)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l 284 (344)
..+++|++|++++|.+.+ ..+.. ...+++|+.|++++|.+++ .+|..+..+++|++|++++|.+.+.+|.. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-TVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccCh-hhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 345677777777777743 23333 3445578888888887775 45566777788888888888877645543 5666
Q ss_pred CCCCEEeCCCCcCccccchHHh-hccC-cccccccc
Q 019237 285 CSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLE 318 (344)
Q Consensus 285 ~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~ 318 (344)
++|+.|++++|.+++.+|..+. .+.. ++++|+++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc
Confidence 6777777777766655554442 3333 56666655
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.1e-26 Score=210.57 Aligned_cols=239 Identities=24% Similarity=0.277 Sum_probs=199.3
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 019237 42 WRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR 112 (344)
Q Consensus 42 ~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 112 (344)
|..+.|... ..+++.|+|++| .+.+..+..|.++++|++|++++|.+... .+..+..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCC
Confidence 456777532 257899999998 77777788899999999999999999875 567888999999
Q ss_pred EEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237 113 YLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR 192 (344)
Q Consensus 113 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 192 (344)
+|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|++++|....... ...+..+++|+.|+++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLG 204 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECC
Confidence 99999999887777778999999999999999986553 568889999999999854433321 1357789999999999
Q ss_pred CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272 (344)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 272 (344)
+|.+.+.+. +..+++|+.|++++|.+. .+.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 205 ~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 205 MCNIKDMPN-----LTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TSCCSSCCC-----CTTCTTCCEEECTTSCCS--EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccccccc-----ccccccccEEECcCCcCc--ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 999987643 556689999999999994 4556666677799999999999998888899999999999999999
Q ss_pred cCCCccccccCCCCCCEEeCCCCcCc
Q 019237 273 LEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 273 ~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
+++..+..+..+++|+.|+|++|.+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCccChHHhccccCCCEEEccCCCcC
Confidence 99766677888999999999999875
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.9e-26 Score=201.72 Aligned_cols=215 Identities=20% Similarity=0.210 Sum_probs=186.9
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
....++.|++++|.++. +|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+...+ ..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTCC
T ss_pred cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCCC
Confidence 35789999999999985 8888889999999999999888 88999999999999999999999554 6789999999
Q ss_pred EEEccccccCCCCchHHH---------HhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchh
Q 019237 162 HLDLSYINLTKSSDWFQV---------VAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL 232 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 232 (344)
+|++++|......+ .. +..+++|++|++++|.+...+. .+..+++|++|++++|.+. .+++.
T Consensus 154 ~L~L~~n~~~~~~p--~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~--~l~~~- 224 (328)
T 4fcg_A 154 ELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLS--ALGPA- 224 (328)
T ss_dssp EEEEEEETTCCCCC--SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCC--CCCGG-
T ss_pred EEECCCCCCccccC--hhHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCC--cCchh-
Confidence 99999987665532 12 3348999999999999985543 3566789999999999994 45555
Q ss_pred hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 233 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
...+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 455669999999999999899999999999999999999999899999999999999999999999999999999876
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=9.5e-26 Score=215.20 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=69.1
Q ss_pred ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC-CCccccccCCCCCCEEeCCCCcCccccchHHhhccC---
Q 019237 235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE-GGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG--- 310 (344)
Q Consensus 235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--- 310 (344)
.+++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 3345666666666665555666666777777777777765 356667777777777777777777666766666555
Q ss_pred -cccccccccccccccccccccccCCCCcceEec
Q 019237 311 -GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 311 -~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
++++|++++..|.. ...+++|+.+++.
T Consensus 499 L~l~~n~l~~~~~~~------~~~l~~L~~L~l~ 526 (570)
T 2z63_A 499 LNMASNQLKSVPDGI------FDRLTSLQKIWLH 526 (570)
T ss_dssp EECCSSCCSCCCTTT------TTTCTTCCEEECC
T ss_pred EeCCCCcCCCCCHHH------hhcccCCcEEEec
Confidence 77777777765533 2367777777765
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=208.15 Aligned_cols=239 Identities=26% Similarity=0.297 Sum_probs=197.8
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 019237 42 WRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR 112 (344)
Q Consensus 42 ~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 112 (344)
|..+.|... ...++.|+|+++ .+.+..+..|.++++|++|++++|.+... .+..|..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCC
Confidence 456777532 256888999998 67777778899999999999999999875 557788999999
Q ss_pred EEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237 113 YLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR 192 (344)
Q Consensus 113 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 192 (344)
+|++++|.+....+..|..+++|++|++++|.+...+. ..+..+++|++|++++|....... ...+..+++|++|+++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLA 193 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCC
Confidence 99999998887777788999999999999999986654 567889999999999865433321 1357889999999999
Q ss_pred CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272 (344)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 272 (344)
+|.+...+. +..+++|+.|++++|.+. .+.+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|+
T Consensus 194 ~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 194 MCNLREIPN-----LTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp TSCCSSCCC-----CTTCSSCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred CCcCccccc-----cCCCcccCEEECCCCccC--ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 999887653 556689999999999983 4555566677799999999999998888889999999999999999
Q ss_pred cCCCccccccCCCCCCEEeCCCCcCc
Q 019237 273 LEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 273 ~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
+++..+..+..+++|+.|+|++|.+.
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCccChhHhccccCCCEEEcCCCCcc
Confidence 99766777888999999999999875
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.9e-26 Score=205.53 Aligned_cols=248 Identities=21% Similarity=0.174 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
+++++|+++++ .+.+..+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+....+..+..
T Consensus 69 ~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCC--------cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 57888999888 55555556777777788888877777764 4556677777777777777666444444567
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh------------------------------
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA------------------------------ 181 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~------------------------------ 181 (344)
+++|++|++++|.+...+. ..+..+++|++|++++|.+..... ..+.
T Consensus 140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccccCCCCcceEEECCCCe
Confidence 7777777777777765432 446667777777777776654321 0111
Q ss_pred -------hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch
Q 019237 182 -------KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254 (344)
Q Consensus 182 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 254 (344)
..++|+.|++++|.+.+. ..+..+++|++|++++|.+. .+.+..+..+++|++|++++|.++ .++
T Consensus 217 l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 288 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-ALN 288 (390)
T ss_dssp CCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECCSSCCC-EEE
T ss_pred eeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCC--CcChhHccccccCCEEECCCCcCc-ccC
Confidence 112455555555555543 23556689999999999884 444555566678999999999998 466
Q ss_pred HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccccc
Q 019237 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGV 320 (344)
Q Consensus 255 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~ 320 (344)
..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++.....+..+.. ++++|++.+.
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 66677899999999999988 67777888899999999999998654444444444 8999988764
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.2e-25 Score=211.28 Aligned_cols=109 Identities=22% Similarity=0.212 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
++++.|++++| .+.+..|..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|.. .
T Consensus 52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 67899999998 67776777889999999999999988875 5677888999999999988876 55555 7
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK 172 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~ 172 (344)
+++|++|++++|.+...+.+..+..+++|++|++++|.+..
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 88899999999988876655678888888888888887764
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.1e-24 Score=193.34 Aligned_cols=253 Identities=18% Similarity=0.253 Sum_probs=170.9
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
...++.++++++. +.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.+... ..+.
T Consensus 43 l~~L~~L~l~~~~--------i~~-~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGEK--------VAS-IQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQ 107 (347)
T ss_dssp HTTCSEEECCSSC--------CCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccccEEEEeCCc--------ccc-ch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence 4679999999984 432 33 38889999999999999987 444 88999999999999987653 4688
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccC
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS 210 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 210 (344)
.+++|++|++++|.+...+. +..+++|++|++++|....... .+..+++|++|++++|.+..... +..+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~-----~~~l 176 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP-----IANL 176 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGC
T ss_pred CCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh-----hccC
Confidence 99999999999999986543 6777888888888875444332 35566666666666665554332 2333
Q ss_pred CcccEEEcCCCCCCC--------------------CCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237 211 TSIETLDLSDNNLPS--------------------SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD 270 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~--------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 270 (344)
++|++|++++|.+.. ..+.+ ...+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 445555555554421 11111 3344567777777777764333 66777777777777
Q ss_pred CccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 271 NELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 271 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
|.+++ + ..+..+++|+.|++++|.+++. ..+..+++ ++++|++++..+.... .+++|+.|+++
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~------~l~~L~~L~L~ 319 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG------GLTNLTTLFLS 319 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH------TCTTCSEEECC
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh------ccccCCEEEcc
Confidence 77764 3 3466777788888888777754 23444444 7788877766654333 67788888775
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.6e-25 Score=215.95 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCccEEEccCCcCc-CCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----c
Q 019237 237 RNILVLDLAFNSLR-GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----G 311 (344)
Q Consensus 237 ~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~ 311 (344)
+.++.|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|+.|+|++|.+++..|..+..+++ +
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 45666666666533 235667777888888888888888777778888888888888888888777777777666 8
Q ss_pred ccccccccccccccccccccccC-CCCcceEec
Q 019237 312 CTMNSLEGVLEIIKSHRAGRKSM-RPLDWIAIA 343 (344)
Q Consensus 312 l~~n~l~~~~~~~~~~~~~~~~l-~~L~~l~l~ 343 (344)
+++|+|++..|.... .+ ++|+.|+|+
T Consensus 549 Ls~N~l~~~~~~~l~------~l~~~L~~L~L~ 575 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQ------HFPSSLAFLNLT 575 (635)
T ss_dssp CTTSCCCBCCSSCTT------CCCTTCCEEECT
T ss_pred CCCCcCCCCCHHHHH------hhhCcCCEEEee
Confidence 888888887775433 44 467888775
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.4e-25 Score=194.02 Aligned_cols=250 Identities=20% Similarity=0.141 Sum_probs=200.0
Q ss_pred EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237 55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134 (344)
Q Consensus 55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 134 (344)
+.++.++. .++ .+|..+ .++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~c~~~--------~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQ--------GLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSS--------CCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcC--------Ccc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 56677766 343 344433 46899999999999875 4567889999999999999988888889999999
Q ss_pred CcEEEccCCC-CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237 135 LVYLRLENSN-LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213 (344)
Q Consensus 135 L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 213 (344)
|++|++++|. +.... +..+..+++|++|++++|.+..... ..+..+++|++|++++|.+...++. .+..+++|
T Consensus 82 L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L 155 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNL 155 (285)
T ss_dssp CCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTC
T ss_pred CCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHh---HhccCCCc
Confidence 9999999997 66543 3668889999999999999887743 4678899999999999999877652 35667899
Q ss_pred cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293 (344)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 293 (344)
++|++++|.+ ..+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 156 ~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 156 THLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp CEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cEEECCCCcc--cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 9999999998 34555556667799999999999998889999999999999999999997666778999999999999
Q ss_pred CCcCccccch--HHhhccC-cccccccccccccc
Q 019237 294 HNKLSGELSE--MIQNLSG-GCTMNSLEGVLEII 324 (344)
Q Consensus 294 ~n~l~~~~~~--~~~~l~~-~l~~n~l~~~~~~~ 324 (344)
+|.+....+. .+..+.. ....+.+.+..|..
T Consensus 234 ~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 234 DNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp SSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred CCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 9999865432 1222222 56667777766643
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4.2e-25 Score=215.15 Aligned_cols=140 Identities=21% Similarity=0.158 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.++++|+++++ .+.+..|..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+.+..|..|.+
T Consensus 49 ~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFN--------TISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCSS--------CCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CcCcEEECCCC--------ccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 57899999988 67777788888888899999988888763 3346788888888888888887777778888
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 201 (344)
+++|++|++++|.+..... ..+..+++|++|++++|.+.......-....+++|++|++++|.+.+..+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 8888888888888875432 45677888888888888877664311112345778888888887766544
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=211.69 Aligned_cols=128 Identities=23% Similarity=0.235 Sum_probs=112.5
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.|+++++ .+.+..|..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+. .+|.. .
T Consensus 21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 68999999999 77777778999999999999999999875 5788999999999999999887 46655 7
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC--cEEEecCCCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLRSCAL 196 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~ 196 (344)
+++|++|++++|.+...+.+..+..+++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence 999999999999999766667899999999999999998762 45677788 9999999988
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-25 Score=215.00 Aligned_cols=245 Identities=21% Similarity=0.187 Sum_probs=180.0
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.|+++++ .+.+..|..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+....+..|..
T Consensus 75 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 57889999998 66666666788888888888888888775 5566778888888888888777655555677
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcc---------------------------
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR--------------------------- 184 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~--------------------------- 184 (344)
+++|++|++++|.+...+. ..+..+++|++|++++|.+.... +..++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred CCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 8888888888888775442 45677788888888888776542 12222
Q ss_pred -------------cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237 185 -------------SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251 (344)
Q Consensus 185 -------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 251 (344)
+|+.|++++|.+.+. ..+..+++|+.|++++|.+. .+.+..+..+++|+.|++++|.++
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~- 291 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV- 291 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECTTSCCC-
T ss_pred CCcccccccccCCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCccC--CCCHHHhcCccCCCEEECCCCCCC-
Confidence 345555555555442 23556688999999999884 344555556678999999999988
Q ss_pred CchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccccc
Q 019237 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGV 320 (344)
Q Consensus 252 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~ 320 (344)
.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+.. ++++|++.+.
T Consensus 292 ~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 46666677889999999999988 67777888899999999999988664444444444 8888888764
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.6e-25 Score=206.34 Aligned_cols=253 Identities=21% Similarity=0.178 Sum_probs=205.1
Q ss_pred ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237 44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123 (344)
Q Consensus 44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~ 123 (344)
...|.. ..+.++.++. .++ .+|..+. +++++|++++|.++.. .+..|..+++|++|++++|.+.+
T Consensus 49 ~C~C~~---~~~~v~c~~~--------~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~ 113 (452)
T 3zyi_A 49 VCSCSN---QFSKVVCTRR--------GLS-EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQ 113 (452)
T ss_dssp TSEECS---SSCEEECCSS--------CCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCEECC---CCcEEEECCC--------CcC-ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCC
Confidence 455642 2345677665 343 3554443 5899999999999885 67788999999999999999998
Q ss_pred cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch
Q 019237 124 KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203 (344)
Q Consensus 124 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 203 (344)
..+..|..+++|++|++++|.+...+. ..+..+++|++|++++|.+..... ..+..+++|+.|++++|......+
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~-- 188 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKKLEYIS-- 188 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred cChhhccCcccCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCCccccC--
Confidence 888999999999999999999986653 557889999999999999886653 467889999999999854433322
Q ss_pred hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGN 283 (344)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 283 (344)
...+..+++|++|++++|.+.+ + +. ...+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~--~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKD--M-PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSS--C-CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhccCCCCCCEEECCCCcccc--c-cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 2346677999999999999943 3 33 344569999999999999888999999999999999999999877888999
Q ss_pred CCCCCEEeCCCCcCccccchHHhhccC----cccccccccc
Q 019237 284 MCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGV 320 (344)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~ 320 (344)
+++|+.|+|++|.+++..+..+..+++ ++++|++...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999999999776666666665 8899987543
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=205.70 Aligned_cols=252 Identities=21% Similarity=0.190 Sum_probs=205.0
Q ss_pred ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237 44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123 (344)
Q Consensus 44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~ 123 (344)
...|.. ..+.++..+. .++ .+|..+. ++++.|++++|.+... .+..|..+++|++|++++|.+..
T Consensus 38 ~C~C~~---~~~~v~c~~~--------~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~ 102 (440)
T 3zyj_A 38 VCSCSN---QFSKVICVRK--------NLR-EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRT 102 (440)
T ss_dssp SSEECT---TSCEEECCSC--------CCS-SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCE
T ss_pred CCEeCC---CCCEEEeCCC--------CcC-cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCc
Confidence 345642 2346677665 343 4555443 5899999999999875 56788999999999999999988
Q ss_pred cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch
Q 019237 124 KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203 (344)
Q Consensus 124 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 203 (344)
..+..|.++++|++|++++|.++..+. ..+..+++|++|++++|.+..... ..+..+++|++|++++|......+
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~-- 177 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYIS-- 177 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred cChhhccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCcccccCH--HHhhhCcccCEeCCCCCCCcceeC--
Confidence 888899999999999999999997664 568889999999999999887653 467889999999999855433322
Q ss_pred hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGN 283 (344)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 283 (344)
...+..+++|++|++++|.+. .++ . ...+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~--~~~-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR--EIP-N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS--SCC-C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred cchhhcccccCeecCCCCcCc--ccc-c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 234667799999999999994 343 3 345569999999999999888999999999999999999999877888999
Q ss_pred CCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237 284 MCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG 319 (344)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~ 319 (344)
+++|+.|+|++|.+++..+..+..+++ ++++|++..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999777666666665 888988753
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=212.07 Aligned_cols=102 Identities=24% Similarity=0.182 Sum_probs=67.1
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS 150 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~ 150 (344)
.+.+..+..|.++++|++|++++|.++.. .+..++.+++|++|++++|.+....+..++.+++|++|++++|.+.....
T Consensus 63 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~l 141 (570)
T 2z63_A 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCC
T ss_pred cCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecC
Confidence 45555555666666777777776666553 34556667777777777666655544456677777777777777765444
Q ss_pred hhhhhcCCCCCEEEccccccCCC
Q 019237 151 LEWLSHLSSLRHLDLSYINLTKS 173 (344)
Q Consensus 151 ~~~l~~~~~L~~L~l~~~~~~~~ 173 (344)
+..+..+++|++|++++|.+...
T Consensus 142 p~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 142 PEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CGGGGGCTTCCEEECTTSCCCEE
T ss_pred hhhhcccCCCCEEeCcCCcccee
Confidence 46677777788888777776543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.6e-25 Score=209.63 Aligned_cols=85 Identities=34% Similarity=0.481 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC-cCCccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRPF 129 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~~~~~ 129 (344)
..++++|++++| .+.+..|..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+ ..|..+
T Consensus 49 l~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSS--------RINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCC--------CcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 356777777777 44444445555555555555555555543 33335555555555555555443 233444
Q ss_pred ccCCCCcEEEccCCC
Q 019237 130 QYLSGLVYLRLENSN 144 (344)
Q Consensus 130 ~~l~~L~~L~ls~~~ 144 (344)
.++++|++|++++|.
T Consensus 120 ~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 120 PNLTNLQTLRIGNVE 134 (549)
T ss_dssp TTCTTCCEEEEEESS
T ss_pred hccCCccEEECCCCc
Confidence 445555555555444
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=8e-26 Score=199.05 Aligned_cols=249 Identities=23% Similarity=0.272 Sum_probs=201.4
Q ss_pred EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCc--CCcccccC
Q 019237 55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK--VPRPFQYL 132 (344)
Q Consensus 55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l 132 (344)
+.++.++. .++ .+|..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+... .+..+..+
T Consensus 10 ~~l~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 10 TEIRCNSK--------GLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp TEEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred CEEEcCCC--------Ccc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence 36777776 343 3444332 5899999999999863 334578999999999999987633 35667789
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS 212 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 212 (344)
++|++|++++|.+...+ ..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+. .+..+++
T Consensus 78 ~~L~~L~Ls~n~i~~l~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~ 151 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSS 151 (306)
T ss_dssp SCCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTT
T ss_pred cccCEEECCCCccccCh--hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchh---hcccCcC
Confidence 99999999999988654 457889999999999999887643 13578899999999999998766542 3566699
Q ss_pred ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292 (344)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 292 (344)
|++|++++|.+.+ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 152 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 152 LEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCEEECCCCcccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 9999999998843 234445566679999999999999777899999999999999999999766667889999999999
Q ss_pred CCCcCccccchHHhhcc-C----cccccccccccc
Q 019237 293 PHNKLSGELSEMIQNLS-G----GCTMNSLEGVLE 322 (344)
Q Consensus 293 ~~n~l~~~~~~~~~~l~-~----~l~~n~l~~~~~ 322 (344)
++|.+++..|..+..++ . ++++|++.+.-+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999998888887764 3 899999987643
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.7e-24 Score=198.62 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=110.0
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
..++++|+++++ .+.+. ++ +.++++|++|++++|.+.. +++ ++.+++|++|++++|.+....+ +.
T Consensus 67 l~~L~~L~Ls~n--------~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~ 131 (466)
T 1o6v_A 67 LNNLTQINFSNN--------QLTDI-TP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDP--LK 131 (466)
T ss_dssp CTTCCEEECCSS--------CCCCC-GG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred hcCCCEEECCCC--------ccCCc-hh-hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCChH--Hc
Confidence 357888888887 44433 22 6667777777777776665 333 6667777777777665554322 55
Q ss_pred cCCCCcEEEccCCCCCCCCch------------------hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237 131 YLSGLVYLRLENSNLFSLGSL------------------EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR 192 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 192 (344)
.+++|++|++++|.+...+.. ..+..+++|++|++++|.+.... .+..+++|++|+++
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIAT 207 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECC
T ss_pred CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEec
Confidence 666666666666655443210 11334455555555555554432 24455555555555
Q ss_pred CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272 (344)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 272 (344)
+|.+.+..+ +..+++|+.|++++|.+.+ + +. ...+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 208 ~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~--~-~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 208 NNQISDITP-----LGILTNLDELSLNGNQLKD--I-GT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276 (466)
T ss_dssp SSCCCCCGG-----GGGCTTCCEEECCSSCCCC--C-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred CCccccccc-----ccccCCCCEEECCCCCccc--c-hh-hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc
Confidence 555544322 2223445555555554422 1 11 2223345555555555443322 4444444444444444
Q ss_pred cCCCccccccCCCCCCEEeCCCCcCcc
Q 019237 273 LEGGIPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 273 ~~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
+++. +. +..+++|+.|++++|.+++
T Consensus 277 l~~~-~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 277 ISNI-SP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp CCCC-GG-GTTCTTCSEEECCSSCCSC
T ss_pred cCcc-cc-ccCCCccCeEEcCCCcccC
Confidence 4422 21 3444444444444444443
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=204.87 Aligned_cols=269 Identities=20% Similarity=0.191 Sum_probs=179.9
Q ss_pred CCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237 27 LSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG 106 (344)
Q Consensus 27 ~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 106 (344)
.+.|. ....|+.+..+........++.++++++ .+ .+|..+... |+.|++++|.+....++..+.
T Consensus 21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~n--------~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~ 85 (312)
T 1wwl_A 21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRVD--------TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL 85 (312)
T ss_dssp SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHCC--------TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH
T ss_pred ccchH---HHhhhhccccEEEEccCCCceeEeeccc--------cc--ccHHHHHHH--HhhcccccccccCCCcCHHHH
Confidence 45665 3344444544433223345666777776 44 556655554 777788888774433555554
Q ss_pred -------CCCCCcEEEccCCcCCCcCCccc--ccCCCCcEEEccCCCCCCCCchhhhhcC-----CCCCEEEccccccCC
Q 019237 107 -------SLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLRLENSNLFSLGSLEWLSHL-----SSLRHLDLSYINLTK 172 (344)
Q Consensus 107 -------~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~ls~~~l~~~~~~~~l~~~-----~~L~~L~l~~~~~~~ 172 (344)
.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+...+ ..+..+ ++|++|++++|.+..
T Consensus 86 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 86 FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp HHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred HHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 67888888888888887777766 77888888888888887663 445554 788888888888877
Q ss_pred CCchHHHHhhcccCcEEEecCCCCCCCCCchhh-ccccCCcccEEEcCCCCCCCC-CCcchhhhccCCccEEEccCCcCc
Q 019237 173 SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW-HFNLSTSIETLDLSDNNLPSS-SVYPWLFNLSRNILVLDLAFNSLR 250 (344)
Q Consensus 173 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~ls~n~l~ 250 (344)
... ..+..+++|++|++++|.+.+..+.... .+..+++|++|++++|.+... .++..++..+++|++|++++|.++
T Consensus 164 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 164 FSC--EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCT--TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred chH--HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 653 3567788888888888876542110001 125567888888888887320 122233345568888888888888
Q ss_pred CCch-HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237 251 GSIP-EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG 319 (344)
Q Consensus 251 ~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~ 319 (344)
+..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|.+++. |. +..+++ ++++|++++
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6553 44556778888888888887 6777665 7888888888888865 54 555555 788888765
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=9.9e-25 Score=207.92 Aligned_cols=127 Identities=24% Similarity=0.266 Sum_probs=108.9
Q ss_pred EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237 55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134 (344)
Q Consensus 55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 134 (344)
+.++++++ .+++ +|..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..|..+++
T Consensus 34 ~~l~ls~~--------~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNR--------NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTS--------CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCC--------CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 78999998 5654 666554 7999999999999885 5678999999999999999999888999999999
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198 (344)
Q Consensus 135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 198 (344)
|++|++++|.++..+. . .+++|++|++++|.+..... +..+..+++|++|++++|.+..
T Consensus 102 L~~L~Ls~N~l~~lp~--~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 102 LEYLDVSHNRLQNISC--C--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCEEECTTSCCCEECS--C--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCT
T ss_pred CCEEECCCCcCCccCc--c--ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCcccc
Confidence 9999999999996664 2 79999999999999887531 2478889999999999998765
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.6e-24 Score=196.68 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=140.2
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.++++++ .+.+ +| .+..+++|++|++++|.+++. + ++.+++|++|++++|.+.+. + +..
T Consensus 42 ~~L~~L~Ls~n--------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHNS--------SITD-MT-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TTCCEEECCSS--------CCCC-CT-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccCC--------Cccc-Ch-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 56888888887 4554 34 577888888888888887763 2 67788888888888777664 2 677
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+...+ +..+++|++|++++|.+.... +..+++|++|++++|...+..+ +..++
T Consensus 105 l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~-----~~~l~ 170 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLD-----VTPQT 170 (457)
T ss_dssp CTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSCCCCCC-----CTTCT
T ss_pred CCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCcccccc-----cccCC
Confidence 788888888888877643 567778888888888776642 4566777777777774333221 33446
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+|++|++++|.+.+ ++ ...+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|+
T Consensus 171 ~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 171 QLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCEEECCCCccce--ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 67777777776633 22 23344666666666666643 25556666666666666664 44 55666666666
Q ss_pred CCCCcCccccchHHhh
Q 019237 292 LPHNKLSGELSEMIQN 307 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~ 307 (344)
+++|.+++..+..+..
T Consensus 240 l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSK 255 (457)
T ss_dssp CCSSCCSCCCCTTCTT
T ss_pred eeCCcCCCcCHHHCCC
Confidence 6666666544443333
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.2e-24 Score=185.41 Aligned_cols=218 Identities=25% Similarity=0.291 Sum_probs=143.7
Q ss_pred CCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEc
Q 019237 37 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNL 116 (344)
Q Consensus 37 ~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L 116 (344)
.+.|.|.++.|.. .+..+.++++++ .++ .+|..+. +++++|++++|.++.. .+..+..+++|++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK--------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS--------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC--------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence 4789999988842 345678888887 444 3454333 5788999999888774 4456788888888888
Q ss_pred cCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCC
Q 019237 117 SCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196 (344)
Q Consensus 117 s~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 196 (344)
++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+..... ..
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~----------------- 128 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPP--RV----------------- 128 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCT--TT-----------------
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeCH--HH-----------------
Confidence 8887776555556777888888888887775543 344555666666666655544322 12
Q ss_pred CCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG 276 (344)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 276 (344)
+..+++|++|++++|.+ ..+++..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 129 ----------~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 129 ----------FDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp ----------TTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ----------hCcCcCCCEEECCCCcC--CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 33345566666666655 233444344455677777777777655555666777777777777777754
Q ss_pred ccccccCCCCCCEEeCCCCcCcc
Q 019237 277 IPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 277 ~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
.+..+..+++|+.|+|++|.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHhccccCCCEEEecCCCeeC
Confidence 45556777778888887777653
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.3e-23 Score=195.64 Aligned_cols=255 Identities=20% Similarity=0.280 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCC----
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP---- 126 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---- 126 (344)
..+++.|+++++ .+.+..+ +.++++|++|++++|.++. ++. +..+++|++|++++|.+.....
T Consensus 89 l~~L~~L~l~~n--------~l~~~~~--~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l 155 (466)
T 1o6v_A 89 LTKLVDILMNNN--------QIADITP--LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISALSGL 155 (466)
T ss_dssp CTTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred cccCCEEECCCC--------ccccChh--hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChhhccC
Confidence 467899999988 4554333 7788888888888888776 333 6677777777777665543210
Q ss_pred ---------------cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEe
Q 019237 127 ---------------RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191 (344)
Q Consensus 127 ---------------~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 191 (344)
..+..+++|++|++++|.+...+ .+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l 228 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP----LGILTNLDELSL 228 (466)
T ss_dssp TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEEC
T ss_pred CcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc----ccccCCCCEEEC
Confidence 12455677777777777766543 35666777777777776655432 344555666666
Q ss_pred cCCCCCCCCCch-----------------hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch
Q 019237 192 RSCALPPINPSF-----------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254 (344)
Q Consensus 192 ~~~~~~~~~~~~-----------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 254 (344)
++|.+.+...-. ...+..+++|++|++++|.+.+ +++ ...+++|+.|++++|.+++..+
T Consensus 229 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred CCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCcccCchh
Confidence 655554431100 0002333445555555554421 222 2233455555555555553322
Q ss_pred HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccc
Q 019237 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAG 330 (344)
Q Consensus 255 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~ 330 (344)
+..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++ ++++|++++..|
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-------- 370 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-------- 370 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--------
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--------
Confidence 4555666666666666554333 45556666666666666543 23444444 667777766655
Q ss_pred cccCCCCcceEec
Q 019237 331 RKSMRPLDWIAIA 343 (344)
Q Consensus 331 ~~~l~~L~~l~l~ 343 (344)
...+++|+.|++.
T Consensus 371 ~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 371 LANLTRITQLGLN 383 (466)
T ss_dssp GTTCTTCCEEECC
T ss_pred hhcCCCCCEEecc
Confidence 2356777777764
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=7.2e-25 Score=218.13 Aligned_cols=258 Identities=21% Similarity=0.202 Sum_probs=195.1
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcC-CcccccCCCCcEEEccCCCCCCCC
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLENSNLFSLG 149 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~ls~~~l~~~~ 149 (344)
.++ .+|. ..+++++|++++|.++.. .+..+..+++|++|++++|...+.+ |..|.++++|++|++++|.+....
T Consensus 15 ~L~-~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 15 NLT-QVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CSS-CCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCC-CCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 444 3454 446899999999999876 6788999999999999999777666 788999999999999999998653
Q ss_pred chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCc
Q 019237 150 SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVY 229 (344)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 229 (344)
+..+..+++|++|++++|.+.........+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+ ..+
T Consensus 90 -p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~Ls~N~i~~-~~~ 165 (844)
T 3j0a_A 90 -PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSIDFSSNQIFL-VCE 165 (844)
T ss_dssp -TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEEEESSCCCC-CCS
T ss_pred -HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEECCCCcCCe-eCH
Confidence 367889999999999999988643211237889999999999999987654 2346777999999999998854 222
Q ss_pred chhhhc-cC------------------------------CccEEEccCCcCcCCchHhhhc-------------------
Q 019237 230 PWLFNL-SR------------------------------NILVLDLAFNSLRGSIPEAFQH------------------- 259 (344)
Q Consensus 230 ~~~~~~-~~------------------------------~L~~L~ls~n~l~~~~~~~~~~------------------- 259 (344)
..+... .+ .|+.|++++|.+++..+..+..
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 222111 01 2677777777665433332221
Q ss_pred -------------------CCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccc
Q 019237 260 -------------------MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNS 316 (344)
Q Consensus 260 -------------------~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~ 316 (344)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..+.++++ ++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 257888888888888766777888889999999999988777777777766 888888
Q ss_pred cccccccccccccccccCCCCcceEec
Q 019237 317 LEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 317 l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
+++..|... ..+++|+.|+++
T Consensus 326 l~~~~~~~~------~~l~~L~~L~L~ 346 (844)
T 3j0a_A 326 LGELYSSNF------YGLPKVAYIDLQ 346 (844)
T ss_dssp CSCCCSCSC------SSCTTCCEEECC
T ss_pred CCccCHHHh------cCCCCCCEEECC
Confidence 887766443 377888888875
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.2e-24 Score=189.67 Aligned_cols=240 Identities=21% Similarity=0.196 Sum_probs=194.2
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc-CCCcCCccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT-SLLKVPRPF 129 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~~ 129 (344)
...++.|+++++ .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|. +....+..+
T Consensus 31 ~~~l~~L~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGN--------RISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCC--------cCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 357999999998 67766677899999999999999999875 57788999999999999997 665668889
Q ss_pred ccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL 209 (344)
Q Consensus 130 ~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 209 (344)
..+++|++|++++|.+..... ..+..+++|++|++++|.+..... ..+..+++|++|++++|.+...+.. .+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~ 175 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPER---AFRG 175 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECTT---TTTT
T ss_pred cCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCHH---HhcC
Confidence 999999999999999986543 668889999999999999987754 3578899999999999998876542 3566
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCE
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNR 289 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 289 (344)
+++|++|++++|.+. .+.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.
T Consensus 176 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp CTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred ccccCEEECCCCccc--ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 799999999999994 343445556679999999999999877888999999999999999988644321 01123445
Q ss_pred EeCCCCcCccccchHHhhc
Q 019237 290 LFLPHNKLSGELSEMIQNL 308 (344)
Q Consensus 290 L~L~~n~l~~~~~~~~~~l 308 (344)
+..+.+.+....|..+.+.
T Consensus 253 ~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 253 FRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp CCSEECCCBEEESGGGTTC
T ss_pred cccccCccccCCchHhCCc
Confidence 5566777777777766553
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.8e-26 Score=200.94 Aligned_cols=241 Identities=22% Similarity=0.186 Sum_probs=189.3
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
++++.|+++++ .+.+..|..+..+++|++|++++|.++. .++ +..+++|++|++++|.+.+. ..
T Consensus 34 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~l-----~~ 97 (317)
T 3o53_A 34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQEL-----LV 97 (317)
T ss_dssp GGCSEEECTTS--------CCCCCCHHHHTTCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSSEEEEE-----EE
T ss_pred CCCCEEECcCC--------ccCcCCHHHhhCCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCCccccc-----cC
Confidence 57889999998 6777777889999999999999999876 333 78899999999998876643 23
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
.++|++|++++|.+...+. ..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+. .....++
T Consensus 98 ~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~ 169 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFA--ELAASSD 169 (317)
T ss_dssp CTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSCCCEEEGG--GGGGGTT
T ss_pred CCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCCCCcccHH--HHhhccC
Confidence 4899999999998886542 347889999999999887643 3567789999999999998876542 2234568
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+|++|++++|.+.. ++.. . ..++|++|++++|.++ .++..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 170 ~L~~L~L~~N~l~~--~~~~-~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 170 TLEHLNLQYNFIYD--VKGQ-V-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp TCCEEECTTSCCCE--EECC-C-CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred cCCEEECCCCcCcc--cccc-c-ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 99999999999843 3322 2 2568999999999999 45555888999999999999998 6888888999999999
Q ss_pred CCCCcCc-cccchHHhhccC----cccc-cccccccc
Q 019237 292 LPHNKLS-GELSEMIQNLSG----GCTM-NSLEGVLE 322 (344)
Q Consensus 292 L~~n~l~-~~~~~~~~~l~~----~l~~-n~l~~~~~ 322 (344)
+++|.++ +.+|..+..++. ++++ +.+.|..|
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9999998 777777777766 5553 33555554
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=197.22 Aligned_cols=242 Identities=21% Similarity=0.231 Sum_probs=194.3
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++..+++.+ .+...++..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+ +..
T Consensus 10 ~~l~i~~ls~~--------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 78 (317)
T 3o53_A 10 NRYKIEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LES 78 (317)
T ss_dssp TEEEEESCCTT--------THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETT
T ss_pred CceeEeecccc--------chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhh
Confidence 45666677666 66655666667788999999999999886 66789999999999999998876554 889
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.++..+ ..++|++|++++|.+..... ..+++|++|++++|.+.+..+. .+..++
T Consensus 79 l~~L~~L~Ls~n~l~~l~------~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~---~~~~l~ 144 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL------VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDL---DEGCRS 144 (317)
T ss_dssp CTTCCEEECCSSEEEEEE------ECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGB---CTGGGS
T ss_pred cCCCCEEECcCCcccccc------CCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccch---hhhccC
Confidence 999999999999887543 45899999999999887643 3478899999999999886542 345568
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+|++|++++|.+.+ ..+..+...+++|++|++++|.+++. +.. ..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 145 ~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 145 RVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 99999999999954 22334444567999999999999844 332 34899999999999999 5666688999999999
Q ss_pred CCCCcCccccchHHhhccC----cccccccc-ccccc
Q 019237 292 LPHNKLSGELSEMIQNLSG----GCTMNSLE-GVLEI 323 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~-~~~~~ 323 (344)
+++|.++ .+|..+..+++ ++++|++. +.+|.
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 9999999 56777766665 89999998 54443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=7.4e-25 Score=196.77 Aligned_cols=246 Identities=22% Similarity=0.211 Sum_probs=186.8
Q ss_pred EEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCc
Q 019237 57 LNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 136 (344)
Q Consensus 57 l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~ 136 (344)
.+.+++ .++ .+|..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.++++|+
T Consensus 36 c~~~~~--------~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 36 CKGSSG--------SLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECCST--------TCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred eeCCCC--------Ccc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 677776 444 4565444 4899999999999874 444789999999999999999888888899999999
Q ss_pred EEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC-CCCCCCchhhccccCCcccE
Q 019237 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIET 215 (344)
Q Consensus 137 ~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~ 215 (344)
+|++++|.++..+. ..+..+++|++|++++|.+...+. ...+..+++|++|++++|. +....+ ..+..+++|++
T Consensus 104 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~ 178 (353)
T 2z80_A 104 HLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQR---KDFAGLTFLEE 178 (353)
T ss_dssp EEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEE
T ss_pred EEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCH---HHccCCCCCCE
Confidence 99999999996653 558899999999999999886542 1246789999999999984 555433 24566799999
Q ss_pred EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc------------------
Q 019237 216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI------------------ 277 (344)
Q Consensus 216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------ 277 (344)
|++++|.+. .+.+.....+++|++|++++|.++......+..+++|+.|++++|.+++..
T Consensus 179 L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 179 LEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEETTCC--EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred EECCCCCcC--ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 999999984 344444556679999999999997433344566899999999999998632
Q ss_pred -------------cccccCCCCCCEEeCCCCcCccccchH-HhhccC----cccccccccccc
Q 019237 278 -------------PKFFGNMCSLNRLFLPHNKLSGELSEM-IQNLSG----GCTMNSLEGVLE 322 (344)
Q Consensus 278 -------------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~----~l~~n~l~~~~~ 322 (344)
|..+..+++|+.|++++|.++ .+|.. +..+++ ++++|++.+..|
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 333455667777777777776 44443 344444 677777766655
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.7e-25 Score=196.18 Aligned_cols=244 Identities=20% Similarity=0.152 Sum_probs=177.1
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCC-CcCCcccc-------cCCCCcEEEccCCCCCCCCch
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSL-LKVPRPFQ-------YLSGLVYLRLENSNLFSLGSL 151 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~-~~~~~~~~-------~l~~L~~L~ls~~~l~~~~~~ 151 (344)
++..++|+.+++++|.+ . +|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+.....
T Consensus 39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP- 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-
T ss_pred EccCCCceeEeeccccc-c--cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-
Confidence 45667788899999988 3 66655533 888888888773 45565554 68899999999998874322
Q ss_pred hhh--hcCCCCCEEEccccccCCCCchHHHHhhc-----ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCC
Q 019237 152 EWL--SHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLP 224 (344)
Q Consensus 152 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (344)
..+ ..+++|++|++++|.+...+. .+..+ ++|++|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTC
T ss_pred HHHHHhcCCCccEEEccCCCCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcC
Confidence 222 788999999999999888754 34444 8899999999998887642 4566789999999999874
Q ss_pred CC-CCcchh-hhccCCccEEEccCCcCcC--Cch-HhhhcCCCCCEEEccCCccCCCcc-ccccCCCCCCEEeCCCCcCc
Q 019237 225 SS-SVYPWL-FNLSRNILVLDLAFNSLRG--SIP-EAFQHMVSLKSLHLTDNELEGGIP-KFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 225 ~~-~~~~~~-~~~~~~L~~L~ls~n~l~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~ 298 (344)
+. .++..+ ...+++|++|++++|.+++ .++ ..+..+++|+.|++++|++++..| ..+..+++|+.|++++|.++
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 31 012222 2455689999999999883 222 344677899999999999987664 44566789999999999998
Q ss_pred cccchHHh-hccC-cccccccccccccccccccccccCCCCcceEecC
Q 019237 299 GELSEMIQ-NLSG-GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY 344 (344)
Q Consensus 299 ~~~~~~~~-~l~~-~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~ 344 (344)
.+|..+. .+.. ++++|++++. |. ...+++|+.|++.+
T Consensus 267 -~ip~~~~~~L~~L~Ls~N~l~~~-p~-------~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 267 -QVPKGLPAKLSVLDLSYNRLDRN-PS-------PDELPQVGNLSLKG 305 (312)
T ss_dssp -SCCSSCCSEEEEEECCSSCCCSC-CC-------TTTSCEEEEEECTT
T ss_pred -hhhhhccCCceEEECCCCCCCCC-hh-------HhhCCCCCEEeccC
Confidence 6676555 3333 8999999876 42 34788888888763
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4e-24 Score=199.79 Aligned_cols=229 Identities=22% Similarity=0.190 Sum_probs=186.8
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
++++.|+|+++ .+.+..|..+..+++|++|++++|.+++. ++ +..+++|++|++++|.+.+.. .
T Consensus 34 ~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~-----~ 97 (487)
T 3oja_A 34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNYVQELL-----V 97 (487)
T ss_dssp GGCCEEECCSS--------CCCCCCGGGGTTCTTCCEEECTTSCCEEE--EE-CTTCTTCCEEECCSSEEEEEE-----E
T ss_pred CCccEEEeeCC--------cCCCCCHHHHhCCCCCCEEEeeCCCCCCC--cc-cccCCCCCEEEecCCcCCCCC-----C
Confidence 47999999999 77777788899999999999999999763 33 889999999999999876433 3
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
.++|++|++++|.+...+. ..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+. .....++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~~l~ 169 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFA--ELAASSD 169 (487)
T ss_dssp CTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTTSCCCEEEGG--GGGGGTT
T ss_pred CCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCCCCCCCcChH--HHhhhCC
Confidence 4899999999999986653 356899999999999987643 3567899999999999999886542 2233568
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+|++|++++|.+.+ ++. .. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 170 ~L~~L~Ls~N~l~~--~~~-~~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 170 TLEHLNLQYNFIYD--VKG-QV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (487)
T ss_dssp TCCEEECTTSCCCE--EEC-CC-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred cccEEecCCCcccc--ccc-cc-cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEE
Confidence 99999999999943 332 22 36689999999999995 4445888999999999999999 5888888999999999
Q ss_pred CCCCcCc-cccchHHhhccC
Q 019237 292 LPHNKLS-GELSEMIQNLSG 310 (344)
Q Consensus 292 L~~n~l~-~~~~~~~~~l~~ 310 (344)
+++|.+. +.+|..+..++.
T Consensus 244 l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 244 LRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CTTCCBCHHHHHHHHTTCHH
T ss_pred cCCCCCcCcchHHHHHhCCC
Confidence 9999998 666776666554
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.5e-25 Score=204.74 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=179.9
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..| +..+++|++|++++|.+...+ ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCC
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcC
Confidence 344899999999999886 67789999999999999999887665 889999999999999887544 348999
Q ss_pred EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237 162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 241 (344)
+|++++|.+..... ..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+ ..+..+...+++|+.
T Consensus 103 ~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 103 TLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEH 173 (487)
T ss_dssp EEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCE
T ss_pred EEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccE
Confidence 99999999988753 3568999999999999886542 34556899999999999954 344455546679999
Q ss_pred EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccc
Q 019237 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSL 317 (344)
Q Consensus 242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l 317 (344)
|++++|.+++. +. ...+++|+.|++++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..++. ++++|++
T Consensus 174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred EecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 99999999854 32 2358999999999999995 65568899999999999999995 6777766655 8999998
Q ss_pred c-cccc
Q 019237 318 E-GVLE 322 (344)
Q Consensus 318 ~-~~~~ 322 (344)
. +.+|
T Consensus 250 ~c~~~~ 255 (487)
T 3oja_A 250 HCGTLR 255 (487)
T ss_dssp CHHHHH
T ss_pred cCcchH
Confidence 7 4444
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.5e-22 Score=187.58 Aligned_cols=232 Identities=18% Similarity=0.175 Sum_probs=160.2
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
..+++.|+++++ .+++ +| ++.+++|++|++++|.+++. + ++.+++|++|++++|.+.+. + +.
T Consensus 63 l~~L~~L~Ls~n--------~l~~-~~--~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l-~--~~ 124 (457)
T 3bz5_A 63 LTGLTKLICTSN--------NITT-LD--LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL-D--VS 124 (457)
T ss_dssp CTTCSEEECCSS--------CCSC-CC--CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC-C--CT
T ss_pred cCCCCEEEccCC--------cCCe-Ec--cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee-c--CC
Confidence 467999999998 4554 23 78889999999999998873 2 77899999999998887763 3 78
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccC
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS 210 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 210 (344)
.+++|++|++++|.++..+ +..+++|++|++++|...... .+..+++|++|++++|.+.+.+ +..+
T Consensus 125 ~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~------l~~l 190 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD------VSQN 190 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC------CTTC
T ss_pred CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec------cccC
Confidence 8899999999999988653 667888888888888544332 2567788888888888877743 3445
Q ss_pred CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC-----
Q 019237 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC----- 285 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~----- 285 (344)
++|+.|++++|.+.+ + + ...+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+.++.
T Consensus 191 ~~L~~L~l~~N~l~~--~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 191 KLLNRLNCDTNNITK--L-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp TTCCEEECCSSCCSC--C-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred CCCCEEECcCCcCCe--e-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 778888888887744 2 1 3344578888888888875 55 66777888888888887754333333332
Q ss_pred --CCCEEeCCCCcCccccchH-HhhccC-cccccccccccc
Q 019237 286 --SLNRLFLPHNKLSGELSEM-IQNLSG-GCTMNSLEGVLE 322 (344)
Q Consensus 286 --~L~~L~L~~n~l~~~~~~~-~~~l~~-~l~~n~l~~~~~ 322 (344)
+|+.|++++|.+.+.+|.. +..+.. ++++|.+.+.+|
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 3445555555544444421 112222 555555555544
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.3e-24 Score=193.70 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=205.6
Q ss_pred CCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcC--CCCCEEeCCCCCCCCCCccccccCCCCCcEE
Q 019237 37 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKL--HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYL 114 (344)
Q Consensus 37 ~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 114 (344)
.-|..|.++.++ ...++.++++++ .+. +..+..+ +.++.|++++|.+.+. .+ .+..+++|++|
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~~--------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L 98 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTGK--------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHM 98 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTTC--------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEE
T ss_pred HHHHHHHHHhcC--chhheeeccccc--------cCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEE
Confidence 345579988874 345889999987 443 4556666 8999999999998874 33 35679999999
Q ss_pred EccCCcCCCc-CCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhcccCcEEEec
Q 019237 115 NLSCGTSLLK-VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLRSLKTLVLR 192 (344)
Q Consensus 115 ~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~~~L~~L~l~ 192 (344)
++++|.+... ++..+..+++|++|++++|.+.. ..+..+..+++|++|++++| .+... .+...+..+++|++|+++
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCC
Confidence 9999987755 77778899999999999998763 23467888999999999999 44432 234568889999999999
Q ss_pred CC-CCCCCCCchhhccccCC-cccEEEcCCC--CCCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEE
Q 019237 193 SC-ALPPINPSFIWHFNLST-SIETLDLSDN--NLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLH 267 (344)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~~~-~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~ 267 (344)
+| .+++.. ....+..++ +|++|++++| .+++ ...+.....+++|++|++++|. +++..+..+..+++|++|+
T Consensus 177 ~~~~l~~~~--~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 177 WCFDFTEKH--VQVAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CCTTCCHHH--HHHHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCcChHH--HHHHHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 99 776531 123355568 9999999999 4543 2233455567799999999999 7777788889999999999
Q ss_pred ccCCc-cCCCccccccCCCCCCEEeCCCCcCccccchHHh-hccC-cccccccccccccccc
Q 019237 268 LTDNE-LEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLEGVLEIIKS 326 (344)
Q Consensus 268 l~~n~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~~~~~~~~~ 326 (344)
+++|. +.......+..+++|+.|++++| ++......+. .++. ++++|++++..|....
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 99995 33233335788999999999999 6654444554 3666 8999999999886543
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=6.4e-23 Score=197.84 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=87.5
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+++.|++++|.+.. .+.+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+
T Consensus 470 ~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 470 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 44455555554322 23344556667999999999999988899999999999999999999977788899999999999
Q ss_pred CCCCcCccccchHHhhccC-----cccccccccc
Q 019237 292 LPHNKLSGELSEMIQNLSG-----GCTMNSLEGV 320 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~ 320 (344)
|++|.+++..|+.+..++. ++++|++...
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999998988877643 8999998653
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.1e-23 Score=177.13 Aligned_cols=210 Identities=28% Similarity=0.284 Sum_probs=152.9
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEE
Confidence 3688888888888764 34467778888888888887777666677888888888888888775443 556778888888
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc---
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL--- 240 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~--- 240 (344)
++++|.+..... ..+..+++|++|++++|.+..... ...+..+++|++|++++|.+. .+++..+....+|+
T Consensus 106 ~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~l--~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp ECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCC--EECGGGGHHHHTCTTCC
T ss_pred ECCCCCccccCc--hhcccCCCCCEEECcCCccceecC--chhhccCCCCCEEECCCCCCC--cCCHHHhhhhhhccccc
Confidence 888887776643 236777888888888888776431 123555688888888888883 33333333344555
Q ss_pred -EEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 241 -VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 241 -~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
.|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|.++...+
T Consensus 180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 889999998854444443 4579999999999886555667889999999999999886654
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.7e-22 Score=174.08 Aligned_cols=204 Identities=22% Similarity=0.181 Sum_probs=158.6
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS 159 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~ 159 (344)
+.+++++++++++++.++. +|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++..+. ...+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTT
T ss_pred ccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCc
Confidence 5566778888888887765 555443 678888888888777777777888888888888888775543 257788
Q ss_pred CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
|++|++++|.+...+. .+..+++|++|++++|.+...++. .+..+++|++|++++|.+ ..+++..+...++|
T Consensus 79 L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL--KTLPPGLLTPTPKL 150 (290)
T ss_dssp CCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTC
T ss_pred CCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCC--CccChhhcccccCC
Confidence 8888888888876553 557788888888888888876642 356668899999999988 45666666667789
Q ss_pred cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
+.|++++|+++...+..+..+++|+.|++++|+++ .+|..+..+++|+.++|++|.+.-
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99999999998666667788899999999999998 678878888899999999998763
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=5.4e-23 Score=196.43 Aligned_cols=241 Identities=24% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCCCCCCCCCCCccccceE------EcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc
Q 019237 28 SSWGRDNDKRDCCKWRGVR------CSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV 101 (344)
Q Consensus 28 ~~w~~~~~~~~~c~~~~~~------c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 101 (344)
..|. .+.++|.|.+.. |......++.++++++ .++ .+|..+. ++|++|++++|.++. +
T Consensus 13 ~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~--l 76 (622)
T 3g06_A 13 SAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--L 76 (622)
T ss_dssp HHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC--C
T ss_pred HHHH---hcCCcchhccccccCcccccccCCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC--C
Confidence 4565 456788885421 1111234778888887 444 4454443 577777777777764 4
Q ss_pred cccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh
Q 019237 102 PEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA 181 (344)
Q Consensus 102 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~ 181 (344)
+. .+++|++|++++|.+.. +|. .+++|++|++++|.+...+. .+++|++|++++|.+...+.
T Consensus 77 p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------ 138 (622)
T 3g06_A 77 PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------ 138 (622)
T ss_dssp CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------
Confidence 44 35677777777776543 443 45667777777776665442 34556666666655554432
Q ss_pred hcccCcEEEecCCCCCCCCCchhhcc--------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237 182 KLRSLKTLVLRSCALPPINPSFIWHF--------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247 (344)
Q Consensus 182 ~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 247 (344)
.+++|++|++++|.+.+.+.. ...+ ..+++|+.|++++|.+.+ ++. ..++|+.|++++|
T Consensus 139 ~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~--l~~----~~~~L~~L~L~~N 211 (622)
T 3g06_A 139 LPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS--LPT----LPSELYKLWAYNN 211 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC----CCTTCCEEECCSS
T ss_pred CCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC--CCC----ccchhhEEECcCC
Confidence 124555555555555443221 0000 112555666666665522 221 1124444444444
Q ss_pred cCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccc
Q 019237 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLE 318 (344)
Q Consensus 248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~ 318 (344)
.++ .+|. .+++|+.|++++|.+++ +| ..+++|+.|+|++|.++ .+|..+..+.. ++++|+|+
T Consensus 212 ~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 212 RLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC
T ss_pred ccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC
Confidence 444 2221 12445555555555552 33 23345555555555555 33332222333 55555555
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-22 Score=174.80 Aligned_cols=211 Identities=26% Similarity=0.276 Sum_probs=143.7
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS 159 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~ 159 (344)
...+++|+.|+++++.+.. + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+...+. ..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPN-GVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred cccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccCh-hHhcCCcC
Confidence 4566777888888777654 2 3456677788888877776542 356777777788887777775443 44567777
Q ss_pred CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
|++|++++|.+..... ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+. .+++..+..+++|
T Consensus 111 L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L 183 (272)
T 3rfs_A 111 LKELVLVENQLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQ--SLPEGVFDKLTQL 183 (272)
T ss_dssp CCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTC
T ss_pred CCEEECCCCcCCccCH--HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcC--ccCHHHhcCCccC
Confidence 7777777777766543 2456677777777777777665542 2445577777777777773 4445445555677
Q ss_pred cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.++|.+|..++.+..
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777777777776666667777777777777776653 3456777777777777777777776654
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.2e-22 Score=173.40 Aligned_cols=212 Identities=24% Similarity=0.207 Sum_probs=173.6
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++.|+++++ .+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 28 ~~l~~L~ls~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTC--------CCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCC--------cccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 46999999999 67766666899999999999999999874 4557889999999999999998888888999
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+..... ..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+.+.++.....+..++
T Consensus 99 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 9999999999999987654 35788999999999999988742 124788899999999999999887653333333333
Q ss_pred ccc-EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237 212 SIE-TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI 277 (344)
Q Consensus 212 ~L~-~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 277 (344)
.+. .|++++|.+. .+++..+... +|+.|++++|.+++..+..+..+++|+.|++++|++....
T Consensus 177 ~l~l~L~ls~n~l~--~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 177 LLNLSLDLSLNPMN--FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCEEEECCSSCCC--EECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccceeeecCCCccc--ccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 333 8999999993 4555555444 8999999999999766777889999999999999998543
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.3e-21 Score=181.26 Aligned_cols=213 Identities=24% Similarity=0.330 Sum_probs=112.6
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS 150 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~ 150 (344)
.+++ +| .++++++|++|++++|.+++ ++.. ..+|++|++++|.+.+ +| .+..+++|++|++++|.+...+.
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence 4443 44 36666666666666666654 3332 2366666666665554 34 46666666666666666654332
Q ss_pred hhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcc
Q 019237 151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP 230 (344)
Q Consensus 151 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 230 (344)
..++|++|++++|.+...+ .+..+++|++|++++|.+.+.+.. +++|++|++++|.+.+ ++.
T Consensus 213 -----~~~~L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~N~l~~--l~~ 274 (454)
T 1jl5_A 213 -----LPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNYLTD--LPE 274 (454)
T ss_dssp -----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCSC-------CTTCCEEECCSSCCSC--CCC
T ss_pred -----CcCcccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCccccc-------ccccCEEECCCCcccc--cCc
Confidence 1235666666666555332 245666667777766666553321 1455555555555421 211
Q ss_pred hhhhccCCccEEEccCCcCcC--CchHhh-------------hcC-CCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237 231 WLFNLSRNILVLDLAFNSLRG--SIPEAF-------------QHM-VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH 294 (344)
Q Consensus 231 ~~~~~~~~L~~L~ls~n~l~~--~~~~~~-------------~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 294 (344)
..++|++|++++|.+++ .+|..+ ..+ ++|+.|++++|++++ +|.. +++|+.|++++
T Consensus 275 ----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 275 ----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp ----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 11244444444444443 111111 111 366666666666663 4443 35677777777
Q ss_pred CcCccccchHHhhccC-ccccccccc
Q 019237 295 NKLSGELSEMIQNLSG-GCTMNSLEG 319 (344)
Q Consensus 295 n~l~~~~~~~~~~l~~-~l~~n~l~~ 319 (344)
|.++ .+|..+..+.. ++++|++++
T Consensus 347 N~l~-~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 347 NHLA-EVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SCCS-CCCCCCTTCCEEECCSSCCSS
T ss_pred Cccc-cccchhhhccEEECCCCCCCc
Confidence 7766 34442223333 677777766
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.6e-23 Score=189.02 Aligned_cols=248 Identities=19% Similarity=0.227 Sum_probs=129.8
Q ss_pred ccchhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCc---CCCcCCccc-------ccCCCCcEEEcc
Q 019237 75 TISPALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGT---SLLKVPRPF-------QYLSGLVYLRLE 141 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~---~~~~~~~~~-------~~l~~L~~L~ls 141 (344)
.++..+..+++|++|++++|.++... ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34555666666666666666654431 11234456666666666542 223334333 455666666666
Q ss_pred CCCCCCCC---chhhhhcCCCCCEEEccccccCCCC--chHHHHhhc---------ccCcEEEecCCCCCCCC-Cchhhc
Q 019237 142 NSNLFSLG---SLEWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKL---------RSLKTLVLRSCALPPIN-PSFIWH 206 (344)
Q Consensus 142 ~~~l~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~---------~~L~~L~l~~~~~~~~~-~~~~~~ 206 (344)
+|.+.... .+..+..+++|++|++++|.+.... .+...+..+ ++|++|++++|.+.... +.+...
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66665422 2234556666666666666654221 112223333 56666666666655221 111123
Q ss_pred cccCCcccEEEcCCCCCCCCC---CcchhhhccCCccEEEccCCcCc----CCchHhhhcCCCCCEEEccCCccCCC---
Q 019237 207 FNLSTSIETLDLSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLR----GSIPEAFQHMVSLKSLHLTDNELEGG--- 276 (344)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~--- 276 (344)
+..+++|++|++++|.+.... +.+.....+++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 334456666666666663101 12212234446666666666664 34555666666666666666666543
Q ss_pred -ccccc--cCCCCCCEEeCCCCcCcc----ccchHH-hhccC----cccccccccccc
Q 019237 277 -IPKFF--GNMCSLNRLFLPHNKLSG----ELSEMI-QNLSG----GCTMNSLEGVLE 322 (344)
Q Consensus 277 -~~~~l--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~----~l~~n~l~~~~~ 322 (344)
++..+ ..+++|+.|+|++|.+++ .+|..+ ..+++ ++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 34444 226666666666666665 355544 22333 666666665553
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=9.1e-24 Score=196.35 Aligned_cols=245 Identities=20% Similarity=0.203 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccc-----cCCCCCcEEEccCCcCCCcC--
Q 019237 53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFI-----GSLSRLRYLNLSCGTSLLKV-- 125 (344)
Q Consensus 53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-----~~l~~L~~L~Ls~~~~~~~~-- 125 (344)
+++.|++++|.+.+.+ ...++..+..+++|++|++++|.++.. .+..+ ...++|++|++++|.+....
T Consensus 86 ~L~~L~L~~n~i~~~~----~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAG----CGVLSSTLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBGGG----HHHHHHHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCHHH----HHHHHHHHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4666666665221100 024455566666666666666665432 11111 12345666666655554422
Q ss_pred --CcccccCCCCcEEEccCCCCCCCCchhhhh-----cCCCCCEEEccccccCCCC--chHHHHhhcccCcEEEecCCCC
Q 019237 126 --PRPFQYLSGLVYLRLENSNLFSLGSLEWLS-----HLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLRSCAL 196 (344)
Q Consensus 126 --~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~ 196 (344)
+..+..+++|++|++++|.+..... ..+. ..++|++|++++|.+.... .+...+..+++|++|++++|.+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 3333445566666666655442211 1111 1345666666665554431 1233444555666666665554
Q ss_pred CCCCCch--hhccccCCcccEEEcCCCCCCCCCC--cchhhhccCCccEEEccCCcCcCCchHhhhc-----CCCCCEEE
Q 019237 197 PPINPSF--IWHFNLSTSIETLDLSDNNLPSSSV--YPWLFNLSRNILVLDLAFNSLRGSIPEAFQH-----MVSLKSLH 267 (344)
Q Consensus 197 ~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----~~~L~~L~ 267 (344)
.+..... ...+..+++|++|++++|.++.... .+.....+++|++|++++|.+++..+..+.. .++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 3321000 0011123455555555555422000 1111222334555555555544322222211 13444444
Q ss_pred ccCCccCCC----ccccccCCCCCCEEeCCCCcCccccch
Q 019237 268 LTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSE 303 (344)
Q Consensus 268 l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~ 303 (344)
+++|.+++. ++..+..+++|+.|++++|.+++..+.
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 444444432 233333445555555555555444333
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.9e-21 Score=164.95 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=109.9
Q ss_pred CCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEcc
Q 019237 38 DCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS 117 (344)
Q Consensus 38 ~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 117 (344)
+|+.|.|+.|.. ..+.++++++ .++ .+|..+. +.+++|++++|.+... .+..+..+++|++|+++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~--------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGK--------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTC--------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCCC--------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence 578899999942 3456777776 333 3444333 4677788887777764 45556667777777777
Q ss_pred CCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237 118 CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197 (344)
Q Consensus 118 ~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 197 (344)
+|.+.+..+..+..+++|++|++++|.+...+. . .+..+++|++|++++|.+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~--------------------------~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-G--------------------------VFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-T--------------------------TTTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccCh-h--------------------------HhcccCCCCEEEcCCCcCC
Confidence 776666555555666666666666665553321 1 1223333444444444333
Q ss_pred CCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI 277 (344)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 277 (344)
..+ +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 121 ~~~-----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 121 SLP-----------------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCC-----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcC-----------------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 322 222223335555555555555444445556666666666666666544
Q ss_pred cccccCCCCCCEEeCCCCcCccc
Q 019237 278 PKFFGNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~~~ 300 (344)
+..+..+++|+.|++++|.++..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 55566666777777777766644
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.2e-21 Score=167.72 Aligned_cols=222 Identities=24% Similarity=0.302 Sum_probs=181.3
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
.+..+++..+.+... .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+... ..+..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEE
T ss_pred HHHHHHhcCcccccc---cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEE
Confidence 344566767666542 334568999999999887653 2 3578899999999999999864 4688999999999
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 244 (344)
+++|.+..... ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+. .+++..+..+++|+.|++
T Consensus 92 L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 92 LTGNQLQSLPN--GVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CCCCccCccCh--hHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEEC
Confidence 99999987754 3578899999999999999887653 3566799999999999994 566666667779999999
Q ss_pred cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-ccccccccccccc
Q 019237 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGVLEI 323 (344)
Q Consensus 245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~~~~ 323 (344)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|. +.. ++++|.++|.+|.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~----l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT----THHHHHHHHHTGGGBBC
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH----HHHHHHHHHhCCCcccC
Confidence 99999977777889999999999999999987777789999999999999999876552 222 7788999998885
Q ss_pred cc
Q 019237 324 IK 325 (344)
Q Consensus 324 ~~ 325 (344)
..
T Consensus 241 ~~ 242 (272)
T 3rfs_A 241 SA 242 (272)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.7e-23 Score=187.97 Aligned_cols=242 Identities=22% Similarity=0.232 Sum_probs=183.9
Q ss_pred CcEEEEEcCCCCcccccCcccccc----cchhhhcCCCCCEEeCCCCCCCCC--Cccccc-------cCCCCCcEEEccC
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGT----ISPALLKLHDLRHLDLSNNHFGGS--PVPEFI-------GSLSRLRYLNLSC 118 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l-------~~l~~L~~L~Ls~ 118 (344)
++++.|+|+++ .+.+. ++..+..+++|++|++++|.+... .+|..+ ..+++|++|++++
T Consensus 32 ~~L~~L~L~~n--------~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 32 DSVKEIVLSGN--------TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SCCCEEECTTS--------EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred CCccEEECCCC--------CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 56999999999 55554 444577899999999999755431 134433 6899999999999
Q ss_pred CcCCC----cCCcccccCCCCcEEEccCCCCCCCCc---hhhhhcC---------CCCCEEEccccccCCC--CchHHHH
Q 019237 119 GTSLL----KVPRPFQYLSGLVYLRLENSNLFSLGS---LEWLSHL---------SSLRHLDLSYINLTKS--SDWFQVV 180 (344)
Q Consensus 119 ~~~~~----~~~~~~~~l~~L~~L~ls~~~l~~~~~---~~~l~~~---------~~L~~L~l~~~~~~~~--~~~~~~l 180 (344)
|.+.. .++..+..+++|++|++++|.+..... ...+..+ ++|++|++++|.+... ..+...+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99887 466778889999999999999863321 1223444 8999999999998743 3333577
Q ss_pred hhcccCcEEEecCCCCCCCCC-chhh-ccccCCcccEEEcCCCCCCC---CCCcchhhhccCCccEEEccCCcCcCC---
Q 019237 181 AKLRSLKTLVLRSCALPPINP-SFIW-HFNLSTSIETLDLSDNNLPS---SSVYPWLFNLSRNILVLDLAFNSLRGS--- 252 (344)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~~~-~~~~-~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~--- 252 (344)
..+++|++|++++|.+..... .... .+..+++|++|++++|.++. ..++. ....+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHH
Confidence 889999999999998873210 0111 45566899999999999842 02333 345567999999999999864
Q ss_pred -chHhhhc--CCCCCEEEccCCccCC----Cccccc-cCCCCCCEEeCCCCcCccccc
Q 019237 253 -IPEAFQH--MVSLKSLHLTDNELEG----GIPKFF-GNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 253 -~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~~ 302 (344)
++..+.. +++|++|++++|.+++ .+|..+ .++++|+.|++++|.+++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5666644 8999999999999996 377777 568999999999999997764
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=3.1e-21 Score=184.26 Aligned_cols=222 Identities=23% Similarity=0.246 Sum_probs=112.9
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.|++++| .++ .+|. .+++|++|++++|.++. ++. .+++|++|++++|.+.+. |. .
T Consensus 61 ~~L~~L~L~~N--------~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l-~~---~ 119 (622)
T 3g06_A 61 AHITTLVIPDN--------NLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHL-PA---L 119 (622)
T ss_dssp TTCSEEEECSC--------CCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCCC-CC---C
T ss_pred CCCcEEEecCC--------CCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCCC-CC---C
Confidence 56888888888 343 2443 45677778888777765 444 467777777776665542 22 3
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhh--------------cccCcEEEecCCCCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK--------------LRSLKTLVLRSCALP 197 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~--------------~~~L~~L~l~~~~~~ 197 (344)
+.+|++|++++|.++..+. .+++|++|++++|.+...+..+..+.. +++|+.|++++|.+.
T Consensus 120 l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 4556666666665554432 135555555555555443221112222 266777777777766
Q ss_pred CCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI 277 (344)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 277 (344)
+.+.. +++|+.|++++|.+. .++. ..++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+
T Consensus 195 ~l~~~-------~~~L~~L~L~~N~l~--~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 195 SLPTL-------PSELYKLWAYNNRLT--SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp CCCCC-------CTTCCEEECCSSCCS--SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred CCCCc-------cchhhEEECcCCccc--ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 54331 144555555555542 2221 12345555555555442 33 23344444555544444 23
Q ss_pred cccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccc
Q 019237 278 PKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVL 321 (344)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~ 321 (344)
|. .+++|+.|+|++|.++ .+|..+..+++ ++++|++++.+
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 33 2344444444444444 33444444433 44444444433
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7.9e-23 Score=180.25 Aligned_cols=228 Identities=20% Similarity=0.122 Sum_probs=135.6
Q ss_pred CCCEEeCCCCCCCCCCcccc--ccCCCCCcEEEccCCcCCCcCCccc--ccCCCCcEEEccCCCCCCCCc---hhhhhcC
Q 019237 85 DLRHLDLSNNHFGGSPVPEF--IGSLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLRLENSNLFSLGS---LEWLSHL 157 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~ls~~~l~~~~~---~~~l~~~ 157 (344)
.++.+.+.++.++...+... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+..... ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46666776666543211111 1124567777777777777777666 667777777777777764221 0223457
Q ss_pred CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch-hhccccCCcccEEEcCCCCCCCCCCcch---hh
Q 019237 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF-IWHFNLSTSIETLDLSDNNLPSSSVYPW---LF 233 (344)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~ 233 (344)
++|++|++++|.+..... ..+..+++|++|++++|.+.+..... ...+..+++|++|++++|.+. .++.. +.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~ 220 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSC--EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALA 220 (310)
T ss_dssp SCCCEEEEECCSSCCCCT--TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhH--HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHH
Confidence 777777777777765542 35566777777777777654311000 011234467777777777772 22221 23
Q ss_pred hccCCccEEEccCCcCcCCchHhhhcC---CCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc-cchHHhhcc
Q 019237 234 NLSRNILVLDLAFNSLRGSIPEAFQHM---VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE-LSEMIQNLS 309 (344)
Q Consensus 234 ~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 309 (344)
..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|+|++|.+++. .+..+..+.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 444577777777777776656555554 57777777777777 5666553 6777777777777752 233333333
Q ss_pred C-ccccccccc
Q 019237 310 G-GCTMNSLEG 319 (344)
Q Consensus 310 ~-~l~~n~l~~ 319 (344)
. ++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 3 677777653
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.4e-21 Score=169.53 Aligned_cols=192 Identities=19% Similarity=0.279 Sum_probs=90.9
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+...+ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---hhcCCCCCC
Confidence 34445555555554443 22 34445555555555444433222 444555555555555544332 244455555
Q ss_pred EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237 162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 241 (344)
+|++++|.+.... .+..+++|++|++++|.+.+.++ +..+++|++|++++|.+. .+++ ...+++|++
T Consensus 111 ~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVS--DLTP--LANLSKLTT 177 (308)
T ss_dssp EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCE
T ss_pred EEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCC--CChh--hcCCCCCCE
Confidence 5555555544432 24445555555555555444322 333355555555555552 2222 233345555
Q ss_pred EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
|++++|.+++..+ +..+++|++|++++|++++ ++ .+..+++|+.|++++|.++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeee
Confidence 5555555553222 4455555555555555553 22 1445555555555555554
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1e-23 Score=195.95 Aligned_cols=283 Identities=20% Similarity=0.183 Sum_probs=162.9
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhh-cCC----CCCEEeCCCCCCCCC---CccccccCCCCCcEEEccCCcCCC
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALL-KLH----DLRHLDLSNNHFGGS---PVPEFIGSLSRLRYLNLSCGTSLL 123 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~Ls~~~~~~ 123 (344)
+++++|+++++ .+.+..+..+. .++ +|++|++++|.++.. .++..+..+++|++|++++|.+..
T Consensus 56 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 56 PALAELNLRSN--------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCEEECTTC--------CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCcCEEeCCCC--------cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 45677777776 33333222222 233 577777777776532 145566677777777777766544
Q ss_pred cCCcccc-----cCCCCcEEEccCCCCCCCCc---hhhhhcCCCCCEEEccccccCCCCc--hHHHHh-hcccCcEEEec
Q 019237 124 KVPRPFQ-----YLSGLVYLRLENSNLFSLGS---LEWLSHLSSLRHLDLSYINLTKSSD--WFQVVA-KLRSLKTLVLR 192 (344)
Q Consensus 124 ~~~~~~~-----~l~~L~~L~ls~~~l~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~-~~~~L~~L~l~ 192 (344)
..+..+. ..++|++|++++|.++.... ...+..+++|++|++++|.+..... +...+. ..++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 3333222 23467777777776664321 2445566777777777776544311 111111 24477777777
Q ss_pred CCCCCCCCCc-hhhccccCCcccEEEcCCCCCCCCC---CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCC
Q 019237 193 SCALPPINPS-FIWHFNLSTSIETLDLSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLK 264 (344)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~ 264 (344)
+|.+...... +...+..+++|++|++++|.+.+.. +.+.+....++|++|++++|.+++. ++..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 7776653211 1223344577888888888763311 1122222345788888888887743 566677778888
Q ss_pred EEEccCCccCCCcccccc-----CCCCCCEEeCCCCcCccc----cchHHhhccC----ccccccccccccccccccccc
Q 019237 265 SLHLTDNELEGGIPKFFG-----NMCSLNRLFLPHNKLSGE----LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGR 331 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~ 331 (344)
+|++++|.+.+..+..+. ..++|+.|++++|.+++. ++..+..+++ ++++|.+++..+... ....
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l 365 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL--CQGL 365 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--HHHH
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH--HHHH
Confidence 888888877643333222 236888888888888765 3444544455 788888776543211 1111
Q ss_pred -ccCCCCcceEecC
Q 019237 332 -KSMRPLDWIAIAY 344 (344)
Q Consensus 332 -~~l~~L~~l~l~~ 344 (344)
...+.|+.|++++
T Consensus 366 ~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 366 GQPGSVLRVLWLAD 379 (461)
T ss_dssp TSTTCCCCEEECTT
T ss_pred cCCCCceEEEECCC
Confidence 1266788887753
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.8e-22 Score=180.51 Aligned_cols=224 Identities=21% Similarity=0.202 Sum_probs=98.4
Q ss_pred hhhhcCC-CCCEEeCCCCCCCCCCccccccCC-----CCCcEEEccCCcCCCcCCcccc----cC-CCCcEEEccCCCCC
Q 019237 78 PALLKLH-DLRHLDLSNNHFGGSPVPEFIGSL-----SRLRYLNLSCGTSLLKVPRPFQ----YL-SGLVYLRLENSNLF 146 (344)
Q Consensus 78 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~Ls~~~~~~~~~~~~~----~l-~~L~~L~ls~~~l~ 146 (344)
..+..++ +|++|++++|.++.. .+..+..+ ++|++|++++|.+....+..+. .+ ++|++|++++|.+.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 4444555 555555555555443 22223222 5555555555555444433222 22 45555555555554
Q ss_pred CCCch---hhhhc-CCCCCEEEccccccCCCC--chHHHHhhcc-cCcEEEecCCCCCCCCCchh-hccccC-CcccEEE
Q 019237 147 SLGSL---EWLSH-LSSLRHLDLSYINLTKSS--DWFQVVAKLR-SLKTLVLRSCALPPINPSFI-WHFNLS-TSIETLD 217 (344)
Q Consensus 147 ~~~~~---~~l~~-~~~L~~L~l~~~~~~~~~--~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~-~~~~~~-~~L~~L~ 217 (344)
..+.. ..+.. .++|++|++++|.+.... .+...+..++ +|++|++++|.+.+...... ..+... ++|++|+
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEE
Confidence 33321 11122 235555555555554331 1222333333 55555555555544332111 112222 3555555
Q ss_pred cCCCCCCCCC---CcchhhhccCCccEEEccCCcCcCCch----HhhhcCCCCCEEEccCCccCCC-------ccccccC
Q 019237 218 LSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLRGSIP----EAFQHMVSLKSLHLTDNELEGG-------IPKFFGN 283 (344)
Q Consensus 218 l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~l~~ 283 (344)
+++|.+.+.. ++..+....++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 5555552210 111222222355555555555554332 2233445555555555553321 1223444
Q ss_pred CCCCCEEeCCCCcCccccc
Q 019237 284 MCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 284 l~~L~~L~L~~n~l~~~~~ 302 (344)
+++|+.|++++|.+.+..+
T Consensus 283 l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCEEEEECTTSCBCCGGGC
T ss_pred CCceEEEecCCCcCCCcch
Confidence 5555555555555554433
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=175.83 Aligned_cols=236 Identities=20% Similarity=0.224 Sum_probs=173.6
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccc--cCCCCCcEEEccCCcCCCcCC---
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFI--GSLSRLRYLNLSCGTSLLKVP--- 126 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~~~~~~~--- 126 (344)
.+++.+.+.+..+.+ ..+. .+. .+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~---~~~~-~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPA---QLLV-GAL-RVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCBH---HHHH-HHH-HHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred cceeEEEEeCCcCCH---HHHH-HHH-HhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence 356778887773221 1111 111 233456799999999999876 66666 889999999999999887655
Q ss_pred -cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH--HHHhhcccCcEEEecCCCCCCCCCch
Q 019237 127 -RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF--QVVAKLRSLKTLVLRSCALPPINPSF 203 (344)
Q Consensus 127 -~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~ 203 (344)
..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.....+. ..+..+++|++|++++|.++..+...
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 344578999999999999976553 56788999999999999875431111 12357889999999999987543321
Q ss_pred hhccccCCcccEEEcCCCCCCCCCCcchhhhc--cCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccc
Q 019237 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL--SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFF 281 (344)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 281 (344)
...+..+++|++|++++|.+.+ ..++.+... +++|++|++++|.++ .+|..+. ++|++|++++|++++ +|. +
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~ 290 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P 290 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T
T ss_pred HHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h
Confidence 2234566899999999999954 334433333 268999999999999 6676664 799999999999994 444 6
Q ss_pred cCCCCCCEEeCCCCcCccc
Q 019237 282 GNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 282 ~~l~~L~~L~L~~n~l~~~ 300 (344)
..+++|+.|+|++|.+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TSCCCCSCEECSSTTTSCC
T ss_pred hhCCCccEEECcCCCCCCC
Confidence 7889999999999998753
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-20 Score=161.43 Aligned_cols=201 Identities=23% Similarity=0.304 Sum_probs=145.5
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
..+.++++++.++. +|..+. +++++|++++|.+....+..|..+++|++|++++|.++..+. ..+..++
T Consensus 17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-~~~~~l~------ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-GIFKELK------ 85 (270)
T ss_dssp TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-TTTSSCT------
T ss_pred CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-hhhcCCC------
Confidence 46778888887765 554432 567777777777666655666777777777777776664432 2233444
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 244 (344)
+|++|++++|.+...++ ..+..+++|++|++++|.+ ..+++..+..+++|++|++
T Consensus 86 --------------------~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 86 --------------------NLETLWVTDNKLQALPI---GVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp --------------------TCCEEECCSSCCCCCCT---TTTTTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred --------------------CCCEEECCCCcCCcCCH---hHcccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEEC
Confidence 45555555555444433 1344557888888888888 3455655667779999999
Q ss_pred cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccc
Q 019237 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGV 320 (344)
Q Consensus 245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~ 320 (344)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++ ++++|++...
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999766777899999999999999999766667889999999999999999766666666665 8999998654
Q ss_pred c
Q 019237 321 L 321 (344)
Q Consensus 321 ~ 321 (344)
-
T Consensus 221 c 221 (270)
T 2o6q_A 221 C 221 (270)
T ss_dssp S
T ss_pred C
Confidence 3
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.7e-20 Score=173.73 Aligned_cols=202 Identities=24% Similarity=0.271 Sum_probs=105.5
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
+|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+...+ .+..+++|++|+
T Consensus 132 ~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP---ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC---CCTTCTTCCEEE
T ss_pred CCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc---cccCCCCCCEEE
Confidence 45555555555543 33 35555555555555555443 3322 135555555555555432 245566666666
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 244 (344)
+++|.+...+. ..++|++|++++|.+...+. +..+++|++|++++|.+. .++. ..++|+.|++
T Consensus 202 l~~N~l~~l~~------~~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l~~N~l~--~l~~----~~~~L~~L~l 264 (454)
T 1jl5_A 202 ADNNSLKKLPD------LPLSLESIVAGNNILEELPE-----LQNLPFLTTIYADNNLLK--TLPD----LPPSLEALNV 264 (454)
T ss_dssp CCSSCCSSCCC------CCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCS--SCCS----CCTTCCEEEC
T ss_pred CCCCcCCcCCC------CcCcccEEECcCCcCCcccc-----cCCCCCCCEEECCCCcCC--cccc----cccccCEEEC
Confidence 66666554432 11356666666666554331 344567777777777763 2222 2246777777
Q ss_pred cCCcCcCCchHhhhcCCCCCEEEccCCccCC--Cccccc-------------cCC-CCCCEEeCCCCcCccccchHHhhc
Q 019237 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEG--GIPKFF-------------GNM-CSLNRLFLPHNKLSGELSEMIQNL 308 (344)
Q Consensus 245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l-------------~~l-~~L~~L~L~~n~l~~~~~~~~~~l 308 (344)
++|.+++ +|.. .++|+.|++++|++++ .+|..+ ..+ ++|+.|++++|.+++ +|..+..+
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L 339 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL 339 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccCCcC
Confidence 7777763 4432 2567777777776664 222111 111 355555555555553 34333333
Q ss_pred cC-cccccccc
Q 019237 309 SG-GCTMNSLE 318 (344)
Q Consensus 309 ~~-~l~~n~l~ 318 (344)
.. ++++|+++
T Consensus 340 ~~L~L~~N~l~ 350 (454)
T 1jl5_A 340 ERLIASFNHLA 350 (454)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCccc
Confidence 33 55666555
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.2e-22 Score=178.81 Aligned_cols=250 Identities=20% Similarity=0.166 Sum_probs=185.8
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCcc----ccccCCC-CCcEEEccCCcCCCcCCcccccC-----CCCcEEEc
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVP----EFIGSLS-RLRYLNLSCGTSLLKVPRPFQYL-----SGLVYLRL 140 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~l-----~~L~~L~l 140 (344)
.+.+.+|..+...++|++|++++|.++.. .+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 78888888888888899999999999875 33 6677888 89999999999988777777664 89999999
Q ss_pred cCCCCCCCCch---hhhhcC-CCCCEEEccccccCCCCc--hHHHHhh-cccCcEEEecCCCCCCCCCch-hhccccC-C
Q 019237 141 ENSNLFSLGSL---EWLSHL-SSLRHLDLSYINLTKSSD--WFQVVAK-LRSLKTLVLRSCALPPINPSF-IWHFNLS-T 211 (344)
Q Consensus 141 s~~~l~~~~~~---~~l~~~-~~L~~L~l~~~~~~~~~~--~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-~~~~~~~-~ 211 (344)
++|.+...... ..+..+ ++|++|++++|.+..... +...+.. .++|++|++++|.+.+..... ...+... +
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 99999865431 124445 899999999999877643 2233444 369999999999988654321 1222333 4
Q ss_pred cccEEEcCCCCCCCCCCcchhh---hcc-CCccEEEccCCcCcCC----chHhhhc-CCCCCEEEccCCccCCCcc----
Q 019237 212 SIETLDLSDNNLPSSSVYPWLF---NLS-RNILVLDLAFNSLRGS----IPEAFQH-MVSLKSLHLTDNELEGGIP---- 278 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~---~~~-~~L~~L~ls~n~l~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~~---- 278 (344)
+|++|++++|.+.+ ..+..+. ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 168 ~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 168 NVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred cccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 99999999999954 2222222 223 4899999999999863 5556665 4599999999999987544
Q ss_pred ccccCCCCCCEEeCCCCcCccccchH-------HhhccC----cccccccccccc
Q 019237 279 KFFGNMCSLNRLFLPHNKLSGELSEM-------IQNLSG----GCTMNSLEGVLE 322 (344)
Q Consensus 279 ~~l~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~----~l~~n~l~~~~~ 322 (344)
..+..+++|+.|++++|.+.+..+.. +..+++ ++++|++.+..+
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 34577899999999999965443332 223333 899999977633
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.6e-20 Score=162.41 Aligned_cols=200 Identities=20% Similarity=0.147 Sum_probs=166.8
Q ss_pred ccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcc
Q 019237 105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184 (344)
Q Consensus 105 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 184 (344)
++++++++.++++++.+. .+|..+. +++++|++++|.+..... ..+..+++|++|++++|.+..... ...++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQV----DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEEC----CSCCT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccC----CCCCC
Confidence 567899999999987765 4565554 689999999999986543 678899999999999999887654 26889
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
+|+.|++++|.+...+. .+..+++|++|++++|.+ ..+++..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 78 ~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TCCEEECCSSCCSSCCC----CTTTCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cCCEEECCCCcCCcCch----hhccCCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 99999999999987654 345668999999999999 456666667777999999999999977777888999999
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG 319 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~ 319 (344)
.|++++|++++..+..+..+++|+.|+|++|.++ .+|..+..... ++++|++..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999999999655566788999999999999999 67777776555 788888754
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.4e-21 Score=162.08 Aligned_cols=197 Identities=20% Similarity=0.221 Sum_probs=156.2
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc-CCCcCCcccccCCCCcEEEccC-CCCCCCCchhhhhcCCCCCE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYLSGLVYLRLEN-SNLFSLGSLEWLSHLSSLRH 162 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~l~~~~~L~~ 162 (344)
+|++|++++|.++.. .+..+..+++|++|++++|. +....+..|..+++|++|++++ |.+...+. ..+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence 789999999998874 44478889999999999887 5555556788899999999998 88876553 45778899999
Q ss_pred EEccccccCCCCchHHHHhhcccCc---EEEecCC-CCCCCCCchhhccccCCccc-EEEcCCCCCCCCCCcchhhhccC
Q 019237 163 LDLSYINLTKSSDWFQVVAKLRSLK---TLVLRSC-ALPPINPSFIWHFNLSTSIE-TLDLSDNNLPSSSVYPWLFNLSR 237 (344)
Q Consensus 163 L~l~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~ 237 (344)
|++++|.+...+. +..+++|+ +|++++| .+...++. .+..+++|+ +|++++|.+ ..++...+.. +
T Consensus 110 L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l--~~i~~~~~~~-~ 179 (239)
T 2xwt_C 110 LGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGF--TSVQGYAFNG-T 179 (239)
T ss_dssp EEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCC--CEECTTTTTT-C
T ss_pred EeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCC--cccCHhhcCC-C
Confidence 9999998887653 56677777 9999999 87776542 356678999 999999998 3555555555 5
Q ss_pred CccEEEccCCc-CcCCchHhhhcC-CCCCEEEccCCccCCCccccccCCCCCCEEeCCCCc
Q 019237 238 NILVLDLAFNS-LRGSIPEAFQHM-VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296 (344)
Q Consensus 238 ~L~~L~ls~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 296 (344)
+|++|++++|. +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 89999999995 886667788888 99999999999998 45554 57899999998863
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.7e-22 Score=176.61 Aligned_cols=239 Identities=20% Similarity=0.198 Sum_probs=182.2
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
..++.++++++ .+.+..+. +..+++|++|++++|.++...++..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~l~~L~l~~n--------~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRS--------FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTC--------EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCc--------cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 67899999998 66665554 6689999999999999865446777889999999999999988788888889
Q ss_pred CCCCcEEEccCC-CCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhcc-cCcEEEecCCC--CCCCCCchhhc
Q 019237 132 LSGLVYLRLENS-NLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLR-SLKTLVLRSCA--LPPINPSFIWH 206 (344)
Q Consensus 132 l~~L~~L~ls~~-~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~~~~~~~~~~ 206 (344)
+++|++|++++| .++....+..+..+++|++|++++| .+... .+...+..++ +|++|++++|. ++.. .....
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~l~~~ 217 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKS--DLSTL 217 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHH--HHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCcccCCHH--HHHHH
Confidence 999999999999 5664334456888999999999999 76643 2345678899 99999999994 4321 11234
Q ss_pred cccCCcccEEEcCCCC-CCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEEccCCccCCCccccccCC
Q 019237 207 FNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM 284 (344)
Q Consensus 207 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 284 (344)
+..+++|++|++++|. +++ ..+..+ ...++|++|++++|. ++......+..+++|+.|++++| ++......+.
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~-~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-- 292 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKN-DCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-- 292 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCG-GGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--
T ss_pred HhhCCCCCEEeCCCCCcCCH-HHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--
Confidence 4567999999999998 543 444444 445799999999995 44333346788999999999999 5543323232
Q ss_pred CCCCEEeCCCCcCccccchHHhh
Q 019237 285 CSLNRLFLPHNKLSGELSEMIQN 307 (344)
Q Consensus 285 ~~L~~L~L~~n~l~~~~~~~~~~ 307 (344)
..++.|++++|.+++..|..+..
T Consensus 293 ~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 293 EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HHSTTSEESCCCSCCTTCSSCSS
T ss_pred hhCcceEEecccCccccCCcccc
Confidence 23666668999999988876554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.5e-19 Score=158.98 Aligned_cols=191 Identities=20% Similarity=0.291 Sum_probs=161.0
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 131 (344)
.+++.|+++++ .+.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.+... ..+..
T Consensus 41 ~~L~~L~l~~~--------~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--SAIAG 105 (308)
T ss_dssp HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--GGGTT
T ss_pred CCcCEEEeeCC--------CccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--hhhcC
Confidence 57999999998 4442 34 48889999999999999987 445 88999999999999987653 36889
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+...+ .+..+++|++|++++|.+..... +..+++|+.|++++|.+.+..+ +..++
T Consensus 106 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~-----l~~l~ 173 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP-----LANLS 173 (308)
T ss_dssp CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred CCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh-----hcCCC
Confidence 999999999999998654 38899999999999999987753 7889999999999999887543 56679
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
+|+.|++++|.+. .+++ ...+++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 174 ~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNKIS--DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEECCSSCCC--CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCEEECCCCccC--cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999994 3443 4556799999999999995543 7889999999999999984
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=3.4e-20 Score=157.11 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=162.1
Q ss_pred CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCC-CCCCCccccccCCCCCcEEEccC-CcCCCcCCcc
Q 019237 51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNH-FGGSPVPEFIGSLSRLRYLNLSC-GTSLLKVPRP 128 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~ 128 (344)
...++.++++++ .+++..+..+..+++|++|++++|. ++.. .+..+..+++|++|++++ |.+....+..
T Consensus 30 ~~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 357899999998 6776666689999999999999997 7763 345788999999999998 8888777788
Q ss_pred cccCCCCcEEEccCCCCCCCCchhhhhcCCCCC---EEEcccc-ccCCCCchHHHHhhcccCc-EEEecCCCCCCCCCch
Q 019237 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR---HLDLSYI-NLTKSSDWFQVVAKLRSLK-TLVLRSCALPPINPSF 203 (344)
Q Consensus 129 ~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~ 203 (344)
|..+++|++|++++|.+...+. +..+++|+ +|++++| .+..... ..+..+++|+ +|++++|.+...+.
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i~~-- 173 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSVQG-- 173 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEECT--
T ss_pred hCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcccCH--
Confidence 8999999999999999987653 67778887 9999999 7776653 3578899999 99999999886554
Q ss_pred hhccccCCcccEEEcCCCC-CCCCCCcchhhhcc-CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237 204 IWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLS-RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272 (344)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 272 (344)
..+.. ++|+.|++++|. + ..+++..+... ++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 174 -~~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 -YAFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -TTTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred -hhcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 23455 799999999995 8 35556666666 79999999999998 44443 57889999998763
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.1e-21 Score=179.75 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCc-----cccce-EEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc
Q 019237 28 SSWGRDNDKRDCC-----KWRGV-RCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV 101 (344)
Q Consensus 28 ~~w~~~~~~~~~c-----~~~~~-~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 101 (344)
..|. ...++| .|.++ .|. .++++.|+++++ .+.+ +|..+ +++|++|++++|.++. +
T Consensus 34 ~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n--------~L~~-lp~~l--~~~L~~L~Ls~N~l~~--i 95 (571)
T 3cvr_A 34 DKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNRL--------NLSS-LPDNL--PPQITVLEITQNALIS--L 95 (571)
T ss_dssp HHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSS--------CCSC-CCSCC--CTTCSEEECCSSCCSC--C
T ss_pred HHHh---ccCCccccccchhhhccccc--cCCccEEEeCCC--------CCCc-cCHhH--cCCCCEEECcCCCCcc--c
Confidence 4665 344556 68888 674 246889999988 5554 55544 3678999999998875 5
Q ss_pred cccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh
Q 019237 102 PEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA 181 (344)
Q Consensus 102 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~ 181 (344)
| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.++..+. .+++|++|++++|.+...+.
T Consensus 96 p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------ 157 (571)
T 3cvr_A 96 P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------ 157 (571)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------
Confidence 5 447888888888887776 555 554 78888888887776442 45667777776666655332
Q ss_pred hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCC
Q 019237 182 KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261 (344)
Q Consensus 182 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 261 (344)
.+++|++|++++|.+.+.+. +. ++|++|++++| .++ .+|. +..
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N--------------------------~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTN--------------------------LLE-SLPA-VPV-- 200 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSS--------------------------CCS-SCCC-CC---
T ss_pred cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCC--------------------------CCC-chhh-HHH--
Confidence 34455555555555544322 11 44455555555 444 3333 221
Q ss_pred CC-------CEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc
Q 019237 262 SL-------KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309 (344)
Q Consensus 262 ~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 309 (344)
+| +.|++++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 33 66666666666 4555555566666666666666666666665543
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2e-19 Score=169.93 Aligned_cols=181 Identities=23% Similarity=0.254 Sum_probs=128.4
Q ss_pred CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEE
Q 019237 110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189 (344)
Q Consensus 110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 189 (344)
+|+.|++++|.+.+ +|..+. ++|++|++++|.+...+ ..+++|++|++++|.+...+. +.. +|+.|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPE----LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcch----hhc--CCCEE
Confidence 56666666555544 444332 55666666666666433 235667777777776665432 222 78888
Q ss_pred EecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEcc
Q 019237 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT 269 (344)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~ 269 (344)
++++|.+.+.+. .+++|+.|++++|.+. .++. .+++|+.|++++|.+++ +|. +. ++|+.|+++
T Consensus 126 ~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~--~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 126 DVDNNQLTMLPE-------LPALLEYINADNNQLT--MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCS--CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred ECCCCcCCCCCC-------cCccccEEeCCCCccC--cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 888887777443 3478999999999884 3443 45689999999999985 666 55 899999999
Q ss_pred CCccCCCccccccCCCCC-------CEEeCCCCcCccccchHHhhccC----cccccccccccccccc
Q 019237 270 DNELEGGIPKFFGNMCSL-------NRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKS 326 (344)
Q Consensus 270 ~n~~~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~ 326 (344)
+|.++ .+|. +.. +| +.|+|++|.++ .+|..+..+++ ++++|++++.+|....
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 99999 6777 554 77 99999999999 67888888777 9999999998875433
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.2e-18 Score=147.03 Aligned_cols=176 Identities=24% Similarity=0.239 Sum_probs=135.6
Q ss_pred CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213 (344)
Q Consensus 134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 213 (344)
..++++++++.++..+. . -.+++++|++++|.+..... ..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus 15 ~~~~l~~~~~~l~~~p~--~--~~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS--G--IPADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAG---VFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCCCSSCCS--C--CCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTC
T ss_pred CCeEEecCCCCccccCC--C--CCCCCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCcCCccCHh---HhccCCcC
Confidence 45566666666665542 1 12467777777777666543 3466777888888888877776542 35566889
Q ss_pred cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293 (344)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 293 (344)
++|++++|.+ ..+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|+
T Consensus 86 ~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 86 GTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcc--cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 9999999988 45566666677799999999999997777778999999999999999996666679999999999999
Q ss_pred CCcCccccchHHhhccC----cccccccccc
Q 019237 294 HNKLSGELSEMIQNLSG----GCTMNSLEGV 320 (344)
Q Consensus 294 ~n~l~~~~~~~~~~l~~----~l~~n~l~~~ 320 (344)
+|.+++..+..+..+++ ++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999777777777666 8999999876
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.7e-18 Score=142.19 Aligned_cols=66 Identities=23% Similarity=0.210 Sum_probs=31.7
Q ss_pred CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
+|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|..++.+..
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44444444444443333334444555555555554432 2344555555555555555555554444
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2e-18 Score=143.05 Aligned_cols=133 Identities=28% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEE
Confidence 4788999999988764 45567788888888888888776666666778888888888888775543 345566677777
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 223 (344)
++++|.+..... ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+
T Consensus 106 ~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 106 ALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCe
Confidence 777766655432 2244455555555555555443321 123334444444444433
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.9e-20 Score=175.92 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=41.9
Q ss_pred cCCccEEEccCCc--CcCCchHhh-hcCCCCCEEEccCCccCC-CccccccCCCCCCEEeCCCCcCccccch-HHhhccC
Q 019237 236 SRNILVLDLAFNS--LRGSIPEAF-QHMVSLKSLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKLSGELSE-MIQNLSG 310 (344)
Q Consensus 236 ~~~L~~L~ls~n~--l~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 310 (344)
+++|++|++++|. +++..+..+ ..+++|+.|++++|.+++ .++..+.++++|+.|+|++|.+++.... ....+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 4455555554432 333323222 235566666666666554 2334445566666666666666544222 2223333
Q ss_pred ----ccccccccc
Q 019237 311 ----GCTMNSLEG 319 (344)
Q Consensus 311 ----~l~~n~l~~ 319 (344)
++++|++++
T Consensus 515 L~~L~ls~n~it~ 527 (592)
T 3ogk_B 515 LRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEEESCBCCT
T ss_pred cCeeECcCCcCCH
Confidence 566666544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1e-18 Score=156.49 Aligned_cols=230 Identities=18% Similarity=0.175 Sum_probs=162.0
Q ss_pred ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237 44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123 (344)
Q Consensus 44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~ 123 (344)
-.+|.. ++++.+++ .++ .+|..+ .+++++|++++|.++.. .+..|..+++|++|+|++|.+.+
T Consensus 6 ~C~C~~-----~~v~C~~~--------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 6 ICHCSN-----RVFLCQES--------KVT-EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLE 68 (350)
T ss_dssp SSEEET-----TEEEEEST--------TCC-SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCC
T ss_pred ccEeeC-----CEEEecCC--------CCC-ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCC
Confidence 356742 24566665 454 466655 35899999999999873 33468999999999999999877
Q ss_pred cCC-cccccCCCCcE-EEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecC-CCCCCCC
Q 019237 124 KVP-RPFQYLSGLVY-LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS-CALPPIN 200 (344)
Q Consensus 124 ~~~-~~~~~l~~L~~-L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~ 200 (344)
.+| ..|.+++++++ +.+..|.+...+. ..+..+++|++|++++|.+..... .......++..|++.+ +.+...+
T Consensus 69 ~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 69 VIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ccChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCc--hhhcccchhhhhhhcccccccccc
Confidence 665 46788888765 5666788876543 567889999999999999887754 2344556777888865 4455444
Q ss_pred Cchhhcccc-CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccC-CcCcCCchHhhhcCCCCCEEEccCCccCCCcc
Q 019237 201 PSFIWHFNL-STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF-NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP 278 (344)
Q Consensus 201 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 278 (344)
.. .+.. ...++.|++++|.+ ..+++.++... +|+++++++ |.++...+..|..+++|+.|++++|+++ .+|
T Consensus 146 ~~---~f~~~~~~l~~L~L~~N~i--~~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp 218 (350)
T 4ay9_X 146 RN---SFVGLSFESVILWLNKNGI--QEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP 218 (350)
T ss_dssp TT---SSTTSBSSCEEEECCSSCC--CEECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCC
T ss_pred cc---chhhcchhhhhhccccccc--cCCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccC
Confidence 31 2333 24688999999999 45666655554 799999975 5666444567889999999999999998 455
Q ss_pred ccccCCCCCCEEeCCCCcCccccc
Q 019237 279 KFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 279 ~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
.. .+.+|+.|.+.++.--..+|
T Consensus 219 ~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 219 SY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SS--SCTTCCEEECTTCTTCCCCC
T ss_pred hh--hhccchHhhhccCCCcCcCC
Confidence 42 24566677766654333555
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3e-18 Score=153.49 Aligned_cols=235 Identities=22% Similarity=0.262 Sum_probs=176.3
Q ss_pred CccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcc-ccccCC
Q 019237 39 CCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVP-EFIGSL 108 (344)
Q Consensus 39 ~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l 108 (344)
.|.|..+.|... ...++.|+|++| .++...+.+|.++++|++|+|++|.+.+. ++ ..|..+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L 78 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNL 78 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSC
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcc
Confidence 378888999532 246889999998 67654455799999999999999998664 44 467888
Q ss_pred CCCcE-EEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhc-cc
Q 019237 109 SRLRY-LNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKL-RS 185 (344)
Q Consensus 109 ~~L~~-L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~-~~ 185 (344)
+++++ +.+..|++....|..|..+++|++|++++|.+...+. ..+....++..+++.++ .+..... ..+..+ ..
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~ 155 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFE 155 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSS
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccc--cchhhcchh
Confidence 88876 5556677877778889999999999999999987664 33445667888888664 4443332 233443 46
Q ss_pred CcEEEecCCCCCCCCCchhhccccCCcccEEEcCC-CCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
++.|++++|.+...+.. .+.. .+|+.+++.+ |.+ ..++...+..+++|+.|++++|+++ .+|.. .+.+|+
T Consensus 156 l~~L~L~~N~i~~i~~~---~f~~-~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~ 226 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNS---AFNG-TQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLK 226 (350)
T ss_dssp CEEEECCSSCCCEECTT---SSTT-EEEEEEECTTCTTC--CCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCC
T ss_pred hhhhccccccccCCChh---hccc-cchhHHhhccCCcc--cCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccch
Confidence 88999999999876652 3433 7899999986 555 4777777777889999999999999 55542 356788
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 295 (344)
.|.+.++.--+.+|. +..+++|+.+++.++
T Consensus 227 ~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 888777754447774 788999999999864
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4e-18 Score=148.63 Aligned_cols=173 Identities=22% Similarity=0.270 Sum_probs=116.2
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS 159 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~ 159 (344)
+..+++|+.|++++|.+.. + +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL---SSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG---GGGTTCTT
T ss_pred hhhcCcccEEEccCCCccc--C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC---hhhccCCC
Confidence 3456677888888877765 3 236667778888888777665443 67777788888887777653 33667777
Q ss_pred CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
|++|++++|.+.... .+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+ +++ ...+++|
T Consensus 114 L~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~--~~~--l~~l~~L 180 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISD--IVP--LAGLTKL 180 (291)
T ss_dssp CCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCC--CGG--GTTCTTC
T ss_pred CCEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCcccc--chh--hcCCCcc
Confidence 777777777776642 4566777777777777776641 34555777777777777732 333 3444577
Q ss_pred cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777777763 33 26667777777777777664
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.5e-18 Score=146.87 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=154.7
Q ss_pred CCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEc
Q 019237 86 LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDL 165 (344)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l 165 (344)
+..+.+..+.+... ..+..+++|+.|++++|.+... + .+..+++|++|++++|.+...+. +..+++|++|++
T Consensus 26 ~~~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l 97 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred HHHHHhcCCCcccc---cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEEC
Confidence 44455666666542 2235689999999998877654 3 48889999999999999987652 889999999999
Q ss_pred cccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc
Q 019237 166 SYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA 245 (344)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls 245 (344)
++|.+.... .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+ + + ....+++|++|+++
T Consensus 98 ~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~-----~l~~l~~L~~L~l~~n~l~~--~-~-~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 98 DENKVKDLS----SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITD--I-T-VLSRLTKLDTLSLE 164 (291)
T ss_dssp CSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCC--C-G-GGGGCTTCSEEECC
T ss_pred CCCcCCCCh----hhccCCCCCEEECCCCcCCCCh-----hhcCCCCCCEEEccCCcCCc--c-h-hhccCCCCCEEEcc
Confidence 999988753 4789999999999999988753 35567999999999999944 3 3 34556699999999
Q ss_pred CCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237 246 FNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 246 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (344)
+|.+++..+ +..+++|+.|++++|.++ .++. +..+++|+.|++++|.++..
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred CCccccchh--hcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccCC
Confidence 999996555 889999999999999998 4554 88999999999999998754
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1e-17 Score=159.79 Aligned_cols=173 Identities=22% Similarity=0.261 Sum_probs=127.6
Q ss_pred hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237 80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS 159 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~ 159 (344)
+..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+...+ .+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT---TSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh---hhccCCC
Confidence 4567788888888888765 33 46778888888888887766544 777888888888888877543 4677888
Q ss_pred CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
|++|+|++|.+.... .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+ +++ ...+++|
T Consensus 111 L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD--IVP--LAGLTKL 177 (605)
T ss_dssp CCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCC--CGG--GTTCTTC
T ss_pred CCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCC--chh--hccCCCC
Confidence 888888888877653 467788888888888887765 235566788888888888743 333 4455678
Q ss_pred cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275 (344)
Q Consensus 240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 275 (344)
+.|+|++|.+++ ++ .+..+++|+.|+|++|.+.+
T Consensus 178 ~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 178 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 888888888874 33 47778888888888888764
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.8e-19 Score=172.51 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=73.5
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc----CCcCcCC-----chHhhhcCCCCCEEEccCCc--cCCCcc
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA----FNSLRGS-----IPEAFQHMVSLKSLHLTDNE--LEGGIP 278 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~ 278 (344)
+++|++|+++.+.+++ ..+..+...+++|++|+++ .+.+++. ++..+..+++|++|++++|. +++..+
T Consensus 377 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4566666665555543 3333344445567777775 4455542 34445667777777776543 443333
Q ss_pred ccc-cCCCCCCEEeCCCCcCcccc-chHHhhccC----cccccccccccccccccccccccCCCCcceEecC
Q 019237 279 KFF-GNMCSLNRLFLPHNKLSGEL-SEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY 344 (344)
Q Consensus 279 ~~l-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~ 344 (344)
..+ ..+++|+.|+|++|.+++.. +..+..+++ ++++|++++.... .....+++|+.|++++
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA-----AAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH-----HHHHHCSSCCEEEEES
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH-----HHHHhcCccCeeECcC
Confidence 333 33678888888888877633 333344443 7888877543221 1223678888888763
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.4e-17 Score=139.94 Aligned_cols=165 Identities=22% Similarity=0.218 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237 27 LSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG 106 (344)
Q Consensus 27 ~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 106 (344)
...|. .+...|.|.++.|... .+ ..+|..+. ++|++|++++|.+... .+..+.
T Consensus 9 ~~~~~---~~~~~Cs~~~v~c~~~--------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~ 61 (229)
T 3e6j_A 9 HSAAC---PSQCSCSGTTVDCRSK--------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVFD 61 (229)
T ss_dssp --CCC---CTTCEEETTEEECTTS--------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTT
T ss_pred hhccC---CCCCEEeCCEeEccCC--------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHhh
Confidence 34555 5788999999999531 11 13333222 6788999999988875 677788
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 186 (344)
.+++|++|++++|.+....+..|..+++|++|++++|.++..+. ..+..+++|++|++++|.+...+. .+..+++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L 137 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR---GIERLTHL 137 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTC
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccCc---ccccCCCC
Confidence 88999999999888866666667888899999999998886653 456788899999999998886643 56888899
Q ss_pred cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCC
Q 019237 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPS 225 (344)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (344)
++|++++|.+...+. ..+..+++|+.|++++|.+..
T Consensus 138 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 138 THLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBCT
T ss_pred CEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCccC
Confidence 999999998887664 245666889999999998843
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.1e-17 Score=157.55 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=157.4
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
.+..+.+..+.+... . .+..+++|+.|++++|.+... + .+..+++|++|+|++|.+...+. +..+++|++|+
T Consensus 22 ~l~~l~l~~~~i~~~--~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDA--V-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSE--E-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccc--c-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence 455566777766542 2 245789999999998887643 3 58899999999999999986653 88999999999
Q ss_pred ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244 (344)
Q Consensus 165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 244 (344)
|++|.+.... .+..+++|+.|++++|.+.+.+ .+..+++|+.|++++|.+.+ + + .+..+++|+.|+|
T Consensus 94 Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~L 160 (605)
T 1m9s_A 94 LDENKIKDLS----SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITD--I-T-VLSRLTKLDTLSL 160 (605)
T ss_dssp CCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCC--C-G-GGGSCTTCSEEEC
T ss_pred CcCCCCCCCh----hhccCCCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCC--c-h-hhcccCCCCEEEC
Confidence 9999998764 5788999999999999998753 35667999999999999954 3 3 3455679999999
Q ss_pred cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (344)
++|.+++..| +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+.
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 9999997666 8899999999999999984 44 588999999999999999865
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.8e-18 Score=165.80 Aligned_cols=263 Identities=18% Similarity=0.116 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHhHhhc-cccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhc
Q 019237 4 RCIDEEREALLTFKQSM-VDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLK 82 (344)
Q Consensus 4 ~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (344)
.-.+.+++|+.++..+. +..+..-..|.. ..+....|.+..+. .++++.++|.++ .+.. ++..+..
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~n--------~~~~-~~~~~l~ 194 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFAN--------GKDE-ANQALLQ 194 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeCC--------CCCc-chhhHhh
Confidence 34456789999999888 344444456753 45556788887774 367899999887 3333 3333322
Q ss_pred CCCCCEEe-----CCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC
Q 019237 83 LHDLRHLD-----LSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL 157 (344)
Q Consensus 83 l~~L~~L~-----l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~ 157 (344)
...|..+. +..|.+.. .+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+...+ ..+..+
T Consensus 195 ~l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l 269 (727)
T 4b8c_D 195 HKKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP--AEIKNL 269 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC--GGGGGG
T ss_pred cCccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC--hhhhCC
Confidence 22333322 22233321 4566778888999999988776 67777778888999999999888554 667888
Q ss_pred CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccC
Q 019237 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 237 (344)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 237 (344)
++|++|+|++|.+...+. .+..+++|+.|+|++|.+...+. .+..+++|++|++++|.+.+ .++..+.....
T Consensus 270 ~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~ 341 (727)
T 4b8c_D 270 SNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEK-QFLKILTEKSV 341 (727)
T ss_dssp TTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCS-HHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCC-CChHHHhhcch
Confidence 899999999988885543 67888888889988888876554 25666888888888888843 33332222211
Q ss_pred CccEEEccCCcCcCCchHhhhcCCCCCEEEccCC--------ccCCCccccccCCCCCCEEeCCCCcCc
Q 019237 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN--------ELEGGIPKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n--------~~~~~~~~~l~~l~~L~~L~L~~n~l~ 298 (344)
....+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 342 ~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 2334678888888766643 445556555 222223333445556666667777664
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=2.4e-18 Score=164.83 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=60.1
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc--C----CcCcC-----CchHhhhcCCCCCEEEccCCccCCCcc
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA--F----NSLRG-----SIPEAFQHMVSLKSLHLTDNELEGGIP 278 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~ 278 (344)
+++|++|.+..+.+++ .....+...+++|++|+++ + +.+++ .++..+..+++|+.|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTN-AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCH-HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCH-HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 3455555554444432 2222333334566666666 2 33431 1222345556666666655 3443333
Q ss_pred ccccC-CCCCCEEeCCCCcCccccchHH-hhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237 279 KFFGN-MCSLNRLFLPHNKLSGELSEMI-QNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA 343 (344)
Q Consensus 279 ~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 343 (344)
..+.. +++|+.|+|++|.+++..+..+ ..+++ ++++|.+++... ......+++|+.|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~-----~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL-----LANASKLETMRSLWMS 514 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH-----HHTGGGGGGSSEEEEE
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH-----HHHHHhCCCCCEEeee
Confidence 33333 5666666666666655544433 22333 666666633221 1122345666666654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=131.38 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=133.3
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCccc
Q 019237 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE 214 (344)
Q Consensus 135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 214 (344)
-++++++++.++..+. . -.+.+++|++++|.+..... ...+..+++|+.|++++|.+.+..+. .+..+++|+
T Consensus 13 ~~~l~~s~n~l~~iP~--~--~~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE--H--IPQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCS--C--CCTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCC
T ss_pred CCEeEeCCCCcccCcc--C--CCCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCC
Confidence 4689999999987663 2 24568999999999887632 12478899999999999999876642 466679999
Q ss_pred EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237 215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH 294 (344)
Q Consensus 215 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 294 (344)
+|++++|.+ ..+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|+|++
T Consensus 85 ~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 85 EILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp EEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 999999999 456676677778999999999999988899999999999999999999987788999999999999999
Q ss_pred CcCccccc
Q 019237 295 NKLSGELS 302 (344)
Q Consensus 295 n~l~~~~~ 302 (344)
|.+....+
T Consensus 163 N~l~c~c~ 170 (220)
T 2v70_A 163 NPFNCNCY 170 (220)
T ss_dssp CCEECSGG
T ss_pred cCCcCCCc
Confidence 99986644
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.5e-17 Score=139.77 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=122.7
Q ss_pred cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237 82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR 161 (344)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~ 161 (344)
.+..+..++++++.++. ++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+...+. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh---hccCCCCC
Confidence 45567778888888876 44 56778899999999887654 44 67788889999999988886552 77888888
Q ss_pred EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237 162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241 (344)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 241 (344)
+|++++|.+..... +.. ++|+.|++++|.+.+.+ .+..+++|++|++++|.+.+ + +. ...+++|+.
T Consensus 89 ~L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~Ls~N~i~~--~-~~-l~~l~~L~~ 154 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDTD-----SLIHLKNLEILSIRNNKLKS--I-VM-LGFLSKLEV 154 (263)
T ss_dssp EEECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBSG-----GGTTCTTCCEEECTTSCCCB--C-GG-GGGCTTCCE
T ss_pred EEECCCCccCCcCc----ccc-CcccEEEccCCccCCCh-----hhcCcccccEEECCCCcCCC--C-hH-HccCCCCCE
Confidence 88888888877643 122 77888888888777642 24556778888888887733 2 22 344557788
Q ss_pred EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG 276 (344)
Q Consensus 242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 276 (344)
|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888777744 5566777777777777777643
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=131.23 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=129.6
Q ss_pred CcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEE
Q 019237 111 LRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190 (344)
Q Consensus 111 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 190 (344)
-+.++++++.+. .+|..+. ..+++|++++|.+........+..+++|++|++++|.+..... ..+..+++|++|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--HHhCCCCCCCEEE
Confidence 358999977765 4666554 4578999999999876543557899999999999999887653 4678899999999
Q ss_pred ecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD 270 (344)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 270 (344)
+++|.+.+.++. .+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus 88 Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 88 LTSNRLENVQHK---MFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCSSCCCCCCGG---GGTTCSSCCEEECTTSCCC--CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCCccCccCHh---HhcCCcCCCEEECCCCcCC--eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 999999887753 4667799999999999994 45555566677999999999999987799999999999999999
Q ss_pred CccCCCcc
Q 019237 271 NELEGGIP 278 (344)
Q Consensus 271 n~~~~~~~ 278 (344)
|.+....+
T Consensus 163 N~l~c~c~ 170 (220)
T 2v70_A 163 NPFNCNCY 170 (220)
T ss_dssp CCEECSGG
T ss_pred cCCcCCCc
Confidence 99876443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=2.2e-16 Score=141.87 Aligned_cols=180 Identities=23% Similarity=0.204 Sum_probs=136.5
Q ss_pred EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCC
Q 019237 55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLS 133 (344)
Q Consensus 55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 133 (344)
+.++++++ .++ .+|..+. +.++.|++++|.++.. .+..+. .+++|++|++++|.+....+..|..++
T Consensus 21 ~~l~c~~~--------~l~-~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQ--------QLP-NVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSS--------CCS-SCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeCCC--------CcC-ccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 36888887 444 3555443 3689999999999875 455565 899999999999999888888899999
Q ss_pred CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213 (344)
Q Consensus 134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 213 (344)
+|++|++++|.+...+. ..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+...+.........+++|
T Consensus 89 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECH--HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 99999999999986553 557889999999999999887643 467888999999999999888765432222456889
Q ss_pred cEEEcCCCCCCCCCCcchhhhccCC--ccEEEccCCcCcC
Q 019237 214 ETLDLSDNNLPSSSVYPWLFNLSRN--ILVLDLAFNSLRG 251 (344)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~~~~~~--L~~L~ls~n~l~~ 251 (344)
+.|++++|.+ ..++...+..++. ++.|++++|.+..
T Consensus 166 ~~L~L~~N~l--~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 166 MLLDLSSNKL--KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CEEECCSSCC--CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CEEECCCCCC--CccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999999988 3455444444444 4778888888873
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.6e-16 Score=131.31 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=108.2
Q ss_pred cEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccE
Q 019237 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIET 215 (344)
Q Consensus 136 ~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 215 (344)
+.++++++.++..+. . -.+++++|++++|.+..... ..+..+++|+.|++++|.+....+ ..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP~--~--l~~~l~~L~l~~n~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT--N--LPETITEIRLEQNTIKVIPP--GAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCCS--S--CCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCCC--c--cCcCCCEEECCCCcCCCcCH--hHhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCE
Confidence 445555555554442 1 12456666666666655432 245566677777777777665543 23555678888
Q ss_pred EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237 216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295 (344)
Q Consensus 216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 295 (344)
|++++|.+ ..+++..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|
T Consensus 85 L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcC--CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88888888 4566666666778888999988888777888888899999999999988766667888899999999999
Q ss_pred cCcc
Q 019237 296 KLSG 299 (344)
Q Consensus 296 ~l~~ 299 (344)
.+.-
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8764
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=6.2e-18 Score=161.90 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhh-cCCCCCEEeCCCC-CCCCCCccccccCCCCCcEEEccCCcCCCcCCccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALL-KLHDLRHLDLSNN-HFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF 129 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 129 (344)
++++.|+++++ .+.+..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+.+..+..+
T Consensus 105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 34666666665 44444444443 4666777777666 33322233333456777777777666544333222
Q ss_pred ----ccCCCCcEEEccCCC--CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC--------
Q 019237 130 ----QYLSGLVYLRLENSN--LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA-------- 195 (344)
Q Consensus 130 ----~~l~~L~~L~ls~~~--l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------- 195 (344)
..+++|++|++++|. +...........+++|++|++++|... ..+...+..+++|++|++..+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhH
Confidence 245567777777665 111111122344577777777766211 1133445556666666644331
Q ss_pred ------------------CCCCCCc-hhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC-CchH
Q 019237 196 ------------------LPPINPS-FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG-SIPE 255 (344)
Q Consensus 196 ------------------~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~ 255 (344)
+...... +......+++|++|++++|.+.+ .....+...+++|++|++++| +++ .++.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 1111110 01111234678888888877643 223333445567777777776 332 2333
Q ss_pred hhhcCCCCCEEEccC---------CccCCCccccc-cCCCCCCEEeCCCCcCccccchHHh
Q 019237 256 AFQHMVSLKSLHLTD---------NELEGGIPKFF-GNMCSLNRLFLPHNKLSGELSEMIQ 306 (344)
Q Consensus 256 ~~~~~~~L~~L~l~~---------n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~ 306 (344)
....+++|++|++.+ +.+++.....+ ..+++|+.|.++.|.+++..+..+.
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 334567777777732 33332222222 2366777776666666655544443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.4e-15 Score=127.77 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=111.5
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCccc
Q 019237 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE 214 (344)
Q Consensus 135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 214 (344)
-+.++.+++.+...+. .-.++|++|++++|.+..... ..+..+++|++|++++|.+...+.. .+..+++|+
T Consensus 21 ~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLT 91 (229)
T ss_dssp TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred CCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCH--HHhhCccCCcEEECCCCCCCCcChh---hcccCCCcC
Confidence 4456666666555442 122566777777776666532 3456677777777777777665532 345567888
Q ss_pred EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237 215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH 294 (344)
Q Consensus 215 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 294 (344)
+|++++|.+ ..+++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 92 ~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 92 VLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcC--CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888888888 3555665666678999999999888 7788888889999999999999865556788889999999999
Q ss_pred CcCcccc
Q 019237 295 NKLSGEL 301 (344)
Q Consensus 295 n~l~~~~ 301 (344)
|.+....
T Consensus 169 N~~~c~c 175 (229)
T 3e6j_A 169 NPWDCEC 175 (229)
T ss_dssp SCBCTTB
T ss_pred CCccCCc
Confidence 9887654
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=4.6e-16 Score=127.60 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=85.3
Q ss_pred CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211 (344)
Q Consensus 132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 211 (344)
+++|++|++++|.+...+ .+..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ ..+..++
T Consensus 43 l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKI---PNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGS---CCCTTCT
T ss_pred cCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeECCccCcccC---hhhcCCC
Confidence 344444444444444322 2444455555555555333221 34455566666666655544221 1234456
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL 290 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 290 (344)
+|++|++++|.+.+ ..+ .....+++|++|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 113 ~L~~L~Ls~n~i~~-~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDD-SIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBG-GGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCEEEecCCccCc-HhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 77777777777632 222 333445577777777776 54 445 56777888888888888774 44 56777888888
Q ss_pred eCCCCcCcc
Q 019237 291 FLPHNKLSG 299 (344)
Q Consensus 291 ~L~~n~l~~ 299 (344)
++++|.+.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 888887653
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=140.47 Aligned_cols=171 Identities=24% Similarity=0.262 Sum_probs=126.5
Q ss_pred CccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhh-cCCCCCEEeCCCCCCCCCCccccccCC
Q 019237 39 CCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALL-KLHDLRHLDLSNNHFGGSPVPEFIGSL 108 (344)
Q Consensus 39 ~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l 108 (344)
.|.+..+.|... ...++.|+|++| .+++..+..+. .+++|++|++++|.++.. .+..|..+
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N--------~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l 87 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHN--------NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPV 87 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSS--------CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTC
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCC--------CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCC
Confidence 366777777431 245778888888 66665566666 888899999999988774 44568888
Q ss_pred CCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHH---hhccc
Q 019237 109 SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVV---AKLRS 185 (344)
Q Consensus 109 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l---~~~~~ 185 (344)
++|++|+|++|.+....+..|..+++|++|++++|.+..... ..+..+++|++|++++|.+...+. ..+ ..+++
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~ 164 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPK 164 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTT
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCc
Confidence 999999999888877777778888999999999998885543 567788899999999998887653 222 56888
Q ss_pred CcEEEecCCCCCCCCCchhhccccCCc--ccEEEcCCCCCC
Q 019237 186 LKTLVLRSCALPPINPSFIWHFNLSTS--IETLDLSDNNLP 224 (344)
Q Consensus 186 L~~L~l~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~l~ 224 (344)
|+.|++++|.+...+.. .+..++. ++.|++++|.+.
T Consensus 165 L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCcc
Confidence 99999999988876642 2333344 478888888873
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=7.7e-16 Score=126.25 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=74.0
Q ss_pred hcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCC
Q 019237 81 LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSL 160 (344)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L 160 (344)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.... +..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGG-SCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCccc-ChhhcCCCCC
Confidence 344455555555555543 33 3445555555555555322 1224455555555555555554311 1334455555
Q ss_pred CEEEccccccCCCCchHHHHhhcccCcEEEecCCC-CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239 (344)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 239 (344)
++|++++|.+.... +..+..+++|++|++++|. +...+ .+..+++|++|++++|.+.+ ++ ....+++|
T Consensus 115 ~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~--~~--~l~~l~~L 183 (197)
T 4ezg_A 115 TLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHD--YR--GIEDFPKL 183 (197)
T ss_dssp CEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCC--CT--TGGGCSSC
T ss_pred CEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcC--hH--HhccCCCC
Confidence 55555555554321 2345555566666666555 43332 23344566666666666532 21 22334466
Q ss_pred cEEEccCCcCc
Q 019237 240 LVLDLAFNSLR 250 (344)
Q Consensus 240 ~~L~ls~n~l~ 250 (344)
++|++++|.+.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 66666666554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=7.8e-17 Score=138.29 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=103.9
Q ss_pred hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCC
Q 019237 79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS 158 (344)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~ 158 (344)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+...+. +.. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-S
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-C
Confidence 46677778888888877765 33 56677788888888777665443 7777788888888887776543 222 7
Q ss_pred CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238 (344)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 238 (344)
+|++|++++|.+.... .+..+++|+.|++++|.+.+.+ .+..+++|++|++++|.+.+ + .....+++
T Consensus 107 ~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~--~--~~l~~l~~ 173 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITN--T--GGLTRLKK 173 (263)
T ss_dssp SCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCB--C--TTSTTCCC
T ss_pred cccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcc--h--HHhccCCC
Confidence 7888888887776653 4667777888888887776653 24555777888888887743 2 22344557
Q ss_pred ccEEEccCCcCcCC
Q 019237 239 ILVLDLAFNSLRGS 252 (344)
Q Consensus 239 L~~L~ls~n~l~~~ 252 (344)
|+.|++++|.+++.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 78888887777643
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1e-15 Score=127.73 Aligned_cols=140 Identities=24% Similarity=0.251 Sum_probs=116.9
Q ss_pred cchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhh
Q 019237 76 ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLS 155 (344)
Q Consensus 76 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~ 155 (344)
+|..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+...+. ..+.
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~ 101 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFE 101 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTT
T ss_pred CCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHcc
Confidence 444333 5799999999999874 44578889999999999999988889999999999999999999997664 5567
Q ss_pred cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCC
Q 019237 156 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLP 224 (344)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (344)
.+++|++|++++|.+..... ..+..+++|+.|++++|.+...++. .+..+++|+.|++++|.+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence 89999999999999988754 4678899999999999999887753 3556689999999999883
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=8.2e-18 Score=159.44 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=91.2
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
.|+.|++++|.+. .++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCC--CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 5778888888883 3443 445568888888888888 778888888888888888888884 66 678888888888
Q ss_pred CCCCcCcccc-chHHhhccC----cccccccccccccccccccccccCCCCcceEe
Q 019237 292 LPHNKLSGEL-SEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI 342 (344)
Q Consensus 292 L~~n~l~~~~-~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l 342 (344)
|++|.+++.. |..+..+++ ++++|++++.+|.... ....+|+|+.|++
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER---LAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH---HHHHCTTCSEEEC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH---HHHHCcccCccCC
Confidence 8888888776 777877776 8888888887663322 2335788888764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.5e-15 Score=121.18 Aligned_cols=137 Identities=25% Similarity=0.219 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCcccccCcccc-cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLK-GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
.+++.|+++++ .+. +.+|..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 24 ~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred ccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 44566666665 343 4455555556666666666666554 2 4455566666666666665555555555
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEecCCCCCCC
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLRSCALPPI 199 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~ 199 (344)
.+++|++|++++|.+...+.+..+..+++|++|++++|.+.....+. ..+..+++|+.|++.+|.....
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 56666666666666554443344555566666666666555443211 2345555555555555554443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.2e-17 Score=158.39 Aligned_cols=184 Identities=23% Similarity=0.202 Sum_probs=122.9
Q ss_pred CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCC-------------CCCCCchhhhhcCCCCCEEE-ccccccCC
Q 019237 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN-------------LFSLGSLEWLSHLSSLRHLD-LSYINLTK 172 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~-------------l~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 172 (344)
.+++|+.|++++|.+. .+|..++++.+|+.|++++|. .. ...+..+..+++|++|+ ++.+.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccch
Confidence 3455555555544442 445555555555555554432 11 11224566677777777 55554322
Q ss_pred CCchH---HHHh--hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237 173 SSDWF---QVVA--KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247 (344)
Q Consensus 173 ~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 247 (344)
..... ..+. ....|+.|++++|.+.+.+. +..+++|+.|++++|.+. .+|.. +..+++|+.|++++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-----~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR--ALPPA-LAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-----GGGGTTCCEEECCSSCCC--CCCGG-GGGCTTCCEEECCSS
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-----ccccccCcEeecCccccc--ccchh-hhcCCCCCEEECCCC
Confidence 21100 0111 12368899999999887643 455689999999999983 55554 445668999999999
Q ss_pred cCcCCchHhhhcCCCCCEEEccCCccCCCc-cccccCCCCCCEEeCCCCcCccccc
Q 019237 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGI-PKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|+|++|.+++..|
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9994 67 7888999999999999998665 8889999999999999999986644
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.6e-15 Score=116.45 Aligned_cols=130 Identities=24% Similarity=0.227 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCCcccccCcccc-cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237 52 GHVKVLNLRRSDDENARGKVLK-GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 130 (344)
.+++.++++++ .+. +.+|..+..+++|++|++++|.++. + ..++.+++|++|++++|.+.+.+|..+.
T Consensus 17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 34666666666 444 4555555666666666666666654 2 4555666666666666666555555555
Q ss_pred cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEec
Q 019237 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLR 192 (344)
Q Consensus 131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~ 192 (344)
.+++|++|++++|.+...+.+..+..+++|++|++++|.+.....+. ..+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 56666666666666654333344556666666666666655543211 234555556555543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=5.1e-15 Score=144.46 Aligned_cols=139 Identities=24% Similarity=0.247 Sum_probs=106.0
Q ss_pred HHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237 178 QVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257 (344)
Q Consensus 178 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 257 (344)
..+..++.|+.|+|++|.+...+.. .+ .+++|++|+|++|.+. .++..+ ..+++|+.|+|++|.++ .+|..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~---~~-~l~~L~~L~Ls~N~l~--~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISAN---IF-KYDFLTRLYLNGNSLT--ELPAEI-KNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGG---GG-GCCSCSCCBCTTSCCS--CCCGGG-GGGTTCCEEECTTSCCS-SCCSSG
T ss_pred hhhccCCCCcEEECCCCCCCCCChh---hc-CCCCCCEEEeeCCcCc--ccChhh-hCCCCCCEEeCcCCcCC-ccChhh
Confidence 4567778888888888887765542 22 4588888899988883 555544 45568999999999988 778888
Q ss_pred hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-----ccccccccccccccc
Q 019237 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-----GCTMNSLEGVLEIIK 325 (344)
Q Consensus 258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~~~~~~ 325 (344)
..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..... ++++|.++|.+|...
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 88999999999999887 77888888999999999999999888887766433 688888888877543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=2.8e-14 Score=116.34 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=79.6
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
++++|++++|.+...++. ..+..+++|++|++++|.+. .+.+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 455555555555544431 12444567777777777773 34344445556788888888888766667777888888
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
+|++++|++++..|..+..+++|+.|+|++|.+++..+
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888887777888888888888888888886654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2.8e-14 Score=113.71 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=16.8
Q ss_pred CccEEEccCCcCcCCch---HhhhcCCCCCEEEccCCccC
Q 019237 238 NILVLDLAFNSLRGSIP---EAFQHMVSLKSLHLTDNELE 274 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~~~---~~~~~~~~L~~L~l~~n~~~ 274 (344)
+|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 34444444444442222 24444555555555555544
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=3.8e-14 Score=115.56 Aligned_cols=129 Identities=23% Similarity=0.290 Sum_probs=109.6
Q ss_pred cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcch-hhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW-LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265 (344)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 265 (344)
+.++++++.+...+..+ ..++++|++++|.+. .+++. .+..+++|++|++++|.+++..|..|..+++|+.
T Consensus 11 ~~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI------PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCC------CCCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 67888888887766421 248999999999994 44442 4566779999999999999888999999999999
Q ss_pred EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccc
Q 019237 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEI 323 (344)
Q Consensus 266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~ 323 (344)
|++++|++++..+..+..+++|+.|+|++|.+++..|..+..+++ ++++|++.+..+.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999999999777777999999999999999999988888887766 8999999887664
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=9.4e-15 Score=129.54 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC-EEEccCCccCCCccccccCCCCCC
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK-SLHLTDNELEGGIPKFFGNMCSLN 288 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~ 288 (344)
+++|+.+++++|.+ ..++...+..+.+|+.|+++.| ++.....+|.++++|+ .+++.+ .++...+.+|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i--~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNA--TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCc--ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 45666666666655 3455555556666666666665 4434455666666666 666665 44433345566666666
Q ss_pred EEeCCCCcCccccchHHhhc
Q 019237 289 RLFLPHNKLSGELSEMIQNL 308 (344)
Q Consensus 289 ~L~L~~n~l~~~~~~~~~~l 308 (344)
.+++++|.++...+..|.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EEEECSSCCCEECTTTTCTT
T ss_pred EEEeCCCccCccchhhhcCC
Confidence 66666666664444444443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.5e-13 Score=108.30 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=85.7
Q ss_pred ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCC
Q 019237 184 RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL 263 (344)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L 263 (344)
++|++|++++|.+.+.++. .+..+++|++|++++|.+ ..+++..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 4566666666666654432 244557788888888877 34555555566789999999998886667778888999
Q ss_pred CEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302 (344)
Q Consensus 264 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 302 (344)
+.|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999986555557889999999999999987655
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=1.1e-13 Score=107.90 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++...++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+... .+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 45666666666665111555555566666666665554443 3444555555555555555432 11333334444444
Q ss_pred EccccccC
Q 019237 164 DLSYINLT 171 (344)
Q Consensus 164 ~l~~~~~~ 171 (344)
++++|.+.
T Consensus 94 ~ls~N~i~ 101 (149)
T 2je0_A 94 NLSGNKIK 101 (149)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 44444443
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4.5e-13 Score=107.63 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=79.2
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.++..+. ..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEE
Confidence 4677888888777654 44456777778888888777766655666777788888888887775543 445677778888
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN 200 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 200 (344)
++++|.+...+. ..+..+++|++|++++|.+....
T Consensus 106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCH
T ss_pred ECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccC
Confidence 888877776543 34566777888888887776544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=4.4e-13 Score=109.28 Aligned_cols=109 Identities=24% Similarity=0.331 Sum_probs=68.6
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
++++|++++|.+...+. .+..+++|++|++++|.+ ..+++..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 32 ~l~~L~L~~n~i~~ip~----~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPK----ELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TCCEEECCSSCCCSCCG----GGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCchhHH----HhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 44555555555543331 234445666666666666 234444444555777777777777766666777777888
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888887775444457777888888888887753
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.7e-13 Score=110.04 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=71.5
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchH--hhhcCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE--AFQHMVS 262 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~~~ 262 (344)
+|+.|++++|.+.+. ..+..+++|++|++++|.+ ..+++.++..+++|++|++++|.++ .+|. .+..+++
T Consensus 43 ~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS 114 (176)
T ss_dssp CCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred CCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence 555555555555443 1244456777777777777 3444455455667888888888876 5554 6777888
Q ss_pred CCEEEccCCccCCCccc----cccCCCCCCEEeCCCCcCcc
Q 019237 263 LKSLHLTDNELEGGIPK----FFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 263 L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~ 299 (344)
|+.|++++|.++ .+|. .+..+++|+.|++++|....
T Consensus 115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888887 4555 37778888888888887653
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=9.4e-13 Score=107.30 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=89.8
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237 84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL 163 (344)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L 163 (344)
++|++|++++|.++. ++..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+...+. ..+..+++|++|
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEE
Confidence 478889999998875 66788888999999999888888777888888999999999998886653 567788899999
Q ss_pred EccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237 164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198 (344)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 198 (344)
++++|.+..... ..+..+++|+.|++.+|.+.-
T Consensus 108 ~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 108 SLHGNDISVVPE--GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCCCCeeCh--hhhhcCccccEEEeCCCCeec
Confidence 999998887653 356778889999998887654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=9e-13 Score=105.77 Aligned_cols=108 Identities=24% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~ 164 (344)
+|++|++++|.++. + ..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+....+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 55555555555544 2 34455555555555555554333233355555555555555554433222445555555555
Q ss_pred ccccccCCCCch-HHHHhhcccCcEEEecCCC
Q 019237 165 LSYINLTKSSDW-FQVVAKLRSLKTLVLRSCA 195 (344)
Q Consensus 165 l~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 195 (344)
+++|.+...+.. ...+..+++|+.|+++.|.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555443321 1124445555555554443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.7e-14 Score=118.21 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=9.0
Q ss_pred hhcCCCCCEEeCCCCCCCC
Q 019237 80 LLKLHDLRHLDLSNNHFGG 98 (344)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~ 98 (344)
+.....++.++++.+.+.+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~ 32 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHG 32 (198)
T ss_dssp HHHTTCCCCTTCSEEECCB
T ss_pred HHhcccccCcchheeEecc
Confidence 3444455555555544443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=3.5e-13 Score=119.40 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=159.2
Q ss_pred CCcEEEEEcCCCCcc--cccCccccc---------cc-chhhhc--------CCCCCEEeCCCCCCCCCCccccccCCCC
Q 019237 51 TGHVKVLNLRRSDDE--NARGKVLKG---------TI-SPALLK--------LHDLRHLDLSNNHFGGSPVPEFIGSLSR 110 (344)
Q Consensus 51 ~~~l~~l~l~~~~~~--~~~~~~~~~---------~~-~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 110 (344)
.++++.|||+++.+. ......+.+ .+ +.+|.+ +++|+.+++.. .++.. -...|..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCcc
Confidence 457899999998766 111111111 22 235566 89999999988 77654 4456788899
Q ss_pred CcEEEccCCcCCCcCCcccccCCCCcEEEccCCCC----CCCCchhhhhcC--------------------------CCC
Q 019237 111 LRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL----FSLGSLEWLSHL--------------------------SSL 160 (344)
Q Consensus 111 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l----~~~~~~~~l~~~--------------------------~~L 160 (344)
|+.++++.|.+....+..|..+.++.++....... ..... ..+..+ .++
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 99999998887777777788777777776655211 11110 112222 233
Q ss_pred CEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc
Q 019237 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240 (344)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 240 (344)
..+.+.++.. ...+......+++|+.+++.+|.+...+. ..|..+.+|+.+++..| + ..+....+..+.+|+
T Consensus 205 ~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~---~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 205 NFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPD---FTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLA 276 (329)
T ss_dssp SEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECT---TTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCC
T ss_pred ceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecH---hhhhCCCCCCEEECCcc-c--ceehHHHhhCChhcc
Confidence 4444433311 11111122348999999999998887664 46788899999999998 5 467788888888899
Q ss_pred -EEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237 241 -VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292 (344)
Q Consensus 241 -~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 292 (344)
.+++.. .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.+..
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999998 777566789999999999999999999666678999999999864
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.3e-13 Score=123.98 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=31.0
Q ss_pred CccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCC----ccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237 238 NILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 307 (344)
+|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|+|++|.+++.....++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 455555555544431 233344444555555555554431 1222333445555555555555444444433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3.2e-14 Score=116.63 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=67.4
Q ss_pred ccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc
Q 019237 128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF 207 (344)
Q Consensus 128 ~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 207 (344)
.+..+++|++|++++|.+...+ .+..+++|++|++++|.+...+. .+..+++|+.|++++|.+.+.+ .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~---~~~~~~~L~~L~L~~N~l~~l~-----~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLS-----GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSS---HHHHHHHCSEEEEEEEECCCHH-----HH
T ss_pred HHhcCCCCCEEECCCCCCcccc---ccccCCCCCEEECCCCCcccccc---hhhcCCcCCEEECcCCcCCcCC-----cc
Confidence 4444555555555555554432 34445555555555555554332 3344455555555555554421 13
Q ss_pred ccCCcccEEEcCCCCCCCCCCcc-hhhhccCCccEEEccCCcCcCCchH----------hhhcCCCCCEEEccCCccC
Q 019237 208 NLSTSIETLDLSDNNLPSSSVYP-WLFNLSRNILVLDLAFNSLRGSIPE----------AFQHMVSLKSLHLTDNELE 274 (344)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~----------~~~~~~~L~~L~l~~n~~~ 274 (344)
..+++|++|++++|.+. .++. .....+++|++|++++|.+++..|. .+..+++|+.|| ++.++
T Consensus 112 ~~l~~L~~L~l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEECCCCcCC--chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 33355666666666552 2221 1233344666666666666543332 366777788776 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.3e-11 Score=98.29 Aligned_cols=109 Identities=26% Similarity=0.309 Sum_probs=87.9
Q ss_pred cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK 264 (344)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 264 (344)
..++++++++.+...+..+ .++|++|++++|.+ ..+.+..+..+++|++|++++|++++..+..|..+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~------~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI------PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC------CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccC------CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 3567888888887766421 27889999999998 445555566677899999999999977777788999999
Q ss_pred EEEccCCccCCCccccccCCCCCCEEeCCCCcCcccc
Q 019237 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301 (344)
Q Consensus 265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 301 (344)
+|++++|++++..+..+..+++|+.|+|++|.++...
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999999666667889999999999999987553
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=9.5e-14 Score=124.83 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC--chHHHH-hhcccCcEEEecCCCCCCCCCc-hhhccc
Q 019237 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS--DWFQVV-AKLRSLKTLVLRSCALPPINPS-FIWHFN 208 (344)
Q Consensus 133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 208 (344)
.+|++|++++|.+...........+++|++|++++|.+.... .+...+ ...++|++|++++|.++..... +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432222111223345555555555544321 111112 1245566666666655432110 111223
Q ss_pred cCCcccEEEcCCCCCCCCC--CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCcccccc
Q 019237 209 LSTSIETLDLSDNNLPSSS--VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFG 282 (344)
Q Consensus 209 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 282 (344)
..++|++|++++|.+.+.. .........++|+.|++++|.+++. +...+..+++|++|+|++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 3456777777777663210 0112223345788888888887752 344556678888888888888754333332
Q ss_pred CC---C--CCCEEe--CCCCcCccc
Q 019237 283 NM---C--SLNRLF--LPHNKLSGE 300 (344)
Q Consensus 283 ~l---~--~L~~L~--L~~n~l~~~ 300 (344)
.+ . .|+.+. +..+.++..
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HCC------CEEECCCC----CHHH
T ss_pred HHhcCCCccchhhHhhhcCCccCHH
Confidence 22 2 277777 777766543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.1e-11 Score=98.82 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=90.8
Q ss_pred cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291 (344)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 291 (344)
+.+.+++++|.+ ..++..+. +++++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 10 ~~~~l~~s~n~l--~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSL--ASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCC--SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCc--CccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 578999999999 45665443 5899999999999988899999999999999999999976666788999999999
Q ss_pred CCCCcCccccchHHhhccC----cccccccccccc
Q 019237 292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLE 322 (344)
Q Consensus 292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~ 322 (344)
|++|.+++..+..+..+++ ++++|++....+
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999776666777766 899999987654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2.9e-11 Score=96.73 Aligned_cols=107 Identities=23% Similarity=0.305 Sum_probs=83.7
Q ss_pred CcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265 (344)
Q Consensus 186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 265 (344)
-+.++++++.+...+..+ .++|++|++++|.+ ..+++..+..+++|++|++++|++++..+..|..+++|+.
T Consensus 14 ~~~l~~~~n~l~~iP~~~------~~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI------PTDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCC------CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCc------CCCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 357778888777665421 27888999999988 3455555666678999999999998666666788999999
Q ss_pred EEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300 (344)
Q Consensus 266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 300 (344)
|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999999965555688899999999999998744
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=4.2e-11 Score=108.61 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=93.7
Q ss_pred hhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC
Q 019237 78 PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL 157 (344)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~ 157 (344)
.+|.++ +|+.+.+..+ ++.. -...|.. .+|+.+.+. +.+.......|.+|.+|+.+++..|.++..+. ..+. .
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~-~~L~~i~lp-~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~-~aF~-~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSI-GDMAFFN-STVQEIVFP-STLEQLKEDIFYYCYNLKKADLSKTKITKLPA-STFV-Y 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEE-CTTTTTT-CCCCEEECC-TTCCEECSSTTTTCTTCCEEECTTSCCSEECT-TTTT-T
T ss_pred hhcccC-CccEEEeCCC-ccEE-CHHhcCC-CCceEEEeC-CCccEehHHHhhCcccCCeeecCCCcceEech-hhEe-e
Confidence 344443 4666666544 3322 1223333 245555555 23444444455555555555555555544332 1222 3
Q ss_pred CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCC---------------------CCCCCCCchhhccccCCcccEE
Q 019237 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC---------------------ALPPINPSFIWHFNLSTSIETL 216 (344)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~~~~~~~~~~~~~~~~~L~~L 216 (344)
++|+.+.+..+ +..... ..+..+++|+.+.+..+ .+.... ...|..+++|+.+
T Consensus 203 ~~L~~l~lp~~-l~~I~~--~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~---~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGS--QAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIA---SRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECCTT-CCEECT--TTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEEC---TTTTTTCTTCCEE
T ss_pred cccCEEEeCCc-hheehh--hHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEC---hhHhhCCCCCCEE
Confidence 44555554422 222211 23444444444444432 122211 1234445556666
Q ss_pred EcCCCCCCC---CCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237 217 DLSDNNLPS---SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293 (344)
Q Consensus 217 ~l~~n~l~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 293 (344)
.+.++.+.. ..+....+..+++|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.++
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 555544310 023444455555566666552 344333445555566666666443 332334455555 66666666
Q ss_pred CCcCcc
Q 019237 294 HNKLSG 299 (344)
Q Consensus 294 ~n~l~~ 299 (344)
+|.+..
T Consensus 354 ~n~~~~ 359 (401)
T 4fdw_A 354 GTTPPQ 359 (401)
T ss_dssp CSSCCB
T ss_pred CCCCcc
Confidence 655543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.5e-11 Score=95.60 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=84.9
Q ss_pred EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237 55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134 (344)
Q Consensus 55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 134 (344)
+.++++++ .+. .+|..+. ++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..|..+++
T Consensus 15 ~~l~~~~n--------~l~-~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNI--------RLA-SVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSS--------CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCC--------CCC-ccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 57888887 442 4555443 7899999999999875 5778888999999999999888766666788999
Q ss_pred CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC
Q 019237 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS 174 (344)
Q Consensus 135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (344)
|++|++++|.+...+. ..+..+++|++|++++|.+....
T Consensus 83 L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred hhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccccc
Confidence 9999999999886653 45778889999999988877553
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=7.7e-11 Score=106.89 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=150.5
Q ss_pred cccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCch
Q 019237 72 LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL 151 (344)
Q Consensus 72 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~ 151 (344)
+...-+.+|.+|++|+.+++.+|.++.. -...|. +.+|+.+.+. +.+.......|.++.+|+.+.+..+ ++..+.
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I-~~~aF~-~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~- 242 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKL-PASTFV-YAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ- 242 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEE-CTTTTT-TCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECT-
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEe-chhhEe-ecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCccc-
Confidence 3333445678888888888888877663 223333 6788888887 4466566677888888999988764 443433
Q ss_pred hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC--chhhccccCCcccEEEcCCCCCCCCCCc
Q 019237 152 EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP--SFIWHFNLSTSIETLDLSDNNLPSSSVY 229 (344)
Q Consensus 152 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 229 (344)
..+.. .+|+.+.+..+ +..... ..+..+++|+.+.+.++....... -....|..+.+|+.+.+..+ + ..+.
T Consensus 243 ~aF~~-~~L~~i~lp~~-i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i--~~I~ 315 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG-VTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I--RILG 315 (401)
T ss_dssp TTTTT-CCCSEEEEETT-CCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C--CEEC
T ss_pred ccccc-CCccEEEeCCC-ccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e--EEEh
Confidence 44445 78899988543 333322 467899999999998877651110 00346788899999999853 5 3666
Q ss_pred chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC-CCCEEeCCCCcCc
Q 019237 230 PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC-SLNRLFLPHNKLS 298 (344)
Q Consensus 230 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~ 298 (344)
...+..+.+|+.+.+..+ ++.....+|..+ +|+.+++.+|.........+.+++ +++.|.+..+.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 777888889999999665 654567788999 999999999988755556677774 7888888776543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.4e-09 Score=96.76 Aligned_cols=95 Identities=26% Similarity=0.244 Sum_probs=80.0
Q ss_pred ccchhhhcCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhh
Q 019237 75 TISPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEW 153 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~ 153 (344)
.+|. +..+++|++|+|++ |.+... .+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+...+. ..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~ 99 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KT 99 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-HH
Confidence 4777 88999999999996 998874 55678999999999999999999888899999999999999999987663 33
Q ss_pred hhcCCCCCEEEccccccCCC
Q 019237 154 LSHLSSLRHLDLSYINLTKS 173 (344)
Q Consensus 154 l~~~~~L~~L~l~~~~~~~~ 173 (344)
+..++ |++|++.+|.+.-.
T Consensus 100 ~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TCSCC-CCEEECCSSCCCCC
T ss_pred cccCC-ceEEEeeCCCccCC
Confidence 44444 99999999988755
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=4.4e-10 Score=100.26 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCcccEEEcCCCCCCCCCCcchhh--hccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237 210 STSIETLDLSDNNLPSSSVYPWLF--NLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFGN 283 (344)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 283 (344)
+++|++|++.+|.+.+ .....+. ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 3566666666665532 1111222 1244677777777766643 2333345667777777777666433333332
Q ss_pred -CCCCCEEeCCCCc
Q 019237 284 -MCSLNRLFLPHNK 296 (344)
Q Consensus 284 -l~~L~~L~L~~n~ 296 (344)
+ ...++++++.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 3456666654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.4e-09 Score=95.30 Aligned_cols=104 Identities=22% Similarity=0.193 Sum_probs=72.7
Q ss_pred EEEecCC-CCCCCCCchhhccccCCcccEEEcCC-CCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237 188 TLVLRSC-ALPPINPSFIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265 (344)
Q Consensus 188 ~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 265 (344)
.++++++ .+...+. +..+++|+.|+|++ |.+ ..+++..+..+++|+.|+|++|.+++..|..|..+++|+.
T Consensus 12 ~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-----LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 3455655 5655443 34446788888875 777 3455555566668888888888888777778888888888
Q ss_pred EEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
|+|++|++++..+..+..++ |+.|+|.+|.+.-
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888888854444455444 8888888888764
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=5.3e-10 Score=99.73 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred cCCccEEEccCCcCcCCchHhhh---cCCCCCEEEccCCccCCC----ccccccCCCCCCEEeCCCCcCccccchHHhh-
Q 019237 236 SRNILVLDLAFNSLRGSIPEAFQ---HMVSLKSLHLTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSEMIQN- 307 (344)
Q Consensus 236 ~~~L~~L~ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~- 307 (344)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45788888887777654433332 466788888888777653 2333345677888888888777665555554
Q ss_pred ccC--cccccc
Q 019237 308 LSG--GCTMNS 316 (344)
Q Consensus 308 l~~--~l~~n~ 316 (344)
+-. +++.++
T Consensus 331 lg~~~~~~~~~ 341 (362)
T 2ra8_A 331 LPMKIDVSDSQ 341 (362)
T ss_dssp CCSEEECCSBC
T ss_pred cCCEEEecCCc
Confidence 311 555554
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=6.2e-09 Score=83.89 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred cccccchhhhcCCCCCEEeCCCC-CCCCCC---ccccccCCCCCcEEEccCCcCCCcC----CcccccCCCCcEEEccCC
Q 019237 72 LKGTISPALLKLHDLRHLDLSNN-HFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKV----PRPFQYLSGLVYLRLENS 143 (344)
Q Consensus 72 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~----~~~~~~l~~L~~L~ls~~ 143 (344)
+...+...+...+.|++|++++| .+...+ +...+...++|++|+|++|.+.... ...+...++|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34455666777778888888887 765431 2334455666777777766654322 222333455666666666
Q ss_pred CCCCCCc---hhhhhcCCCCCEEEc--cccccCCC--CchHHHHhhcccCcEEEecCCC
Q 019237 144 NLFSLGS---LEWLSHLSSLRHLDL--SYINLTKS--SDWFQVVAKLRSLKTLVLRSCA 195 (344)
Q Consensus 144 ~l~~~~~---~~~l~~~~~L~~L~l--~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~ 195 (344)
.+..... ...+...++|++|++ ++|.+... ..+...+...+.|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 6553221 123344455666666 45554433 1122334444555555555444
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=8.7e-09 Score=83.04 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=68.8
Q ss_pred HhhcccCcEEEecCC-CCCCCCCc-hhhccccCCcccEEEcCCCCCCCCC--CcchhhhccCCccEEEccCCcCcCC---
Q 019237 180 VAKLRSLKTLVLRSC-ALPPINPS-FIWHFNLSTSIETLDLSDNNLPSSS--VYPWLFNLSRNILVLDLAFNSLRGS--- 252 (344)
Q Consensus 180 l~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~--- 252 (344)
+...+.|++|++++| .+...... +...+...++|++|++++|.+.+.. .........++|++|+|++|.|++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555554 44321110 1112233356666666666663210 0111222334678888888877752
Q ss_pred -chHhhhcCCCCCEEEc--cCCccCCC----ccccccCCCCCCEEeCCCCcCcc
Q 019237 253 -IPEAFQHMVSLKSLHL--TDNELEGG----IPKFFGNMCSLNRLFLPHNKLSG 299 (344)
Q Consensus 253 -~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~ 299 (344)
+...+...++|++|++ ++|.+... +...+...++|+.|+|++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4556677788888888 77887753 34455666889999999888763
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=1.5e-06 Score=78.61 Aligned_cols=236 Identities=17% Similarity=0.109 Sum_probs=115.4
Q ss_pred CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCC------------
Q 019237 52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG------------ 119 (344)
Q Consensus 52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~------------ 119 (344)
..++.+.+.. .++..-..+|.++.+|+.+++..+ ++.. -...|..+.+|+.+.+..+
T Consensus 71 ~~L~~i~lp~---------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 71 RKVTEIKIPS---------TVREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp TTEEEEECCT---------TCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred CCceEEEeCC---------CccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCceeeecceeeecc
Confidence 4677777764 344444557888888999888654 3221 1233444555554444311
Q ss_pred ---------cCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEE
Q 019237 120 ---------TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190 (344)
Q Consensus 120 ---------~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 190 (344)
.........|.++.+|+.+.+..+- ...+. ..+..+++|+.+.+..+. ..... ..+..+..|+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-~~F~~c~~L~~i~l~~~~-~~I~~--~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHN-GLFSGCGKLKSIKLPRNL-KIIRD--YCFAECILLENME 214 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECT-TTTTTCTTCCBCCCCTTC-CEECT--TTTTTCTTCCBCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceecc-ccccCCCCceEEEcCCCc-eEeCc--hhhccccccceee
Confidence 1111223456677788888876543 22222 446666777777665441 11111 1233344444433
Q ss_pred ecCCCC---------------------CCCCCchhhccccCCcccEEEcCCCCCC--C----------------CCCcch
Q 019237 191 LRSCAL---------------------PPINPSFIWHFNLSTSIETLDLSDNNLP--S----------------SSVYPW 231 (344)
Q Consensus 191 l~~~~~---------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~----------------~~~~~~ 231 (344)
+..+.. .... ...+..+..++.+.+..+... . ..++..
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~---~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~ 291 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELG---KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK 291 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEEC---SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecc---cccccccccceeEEcCCCcceeeccccccccccceeccCceeeccc
Confidence 322110 0000 112333445555554433210 0 011122
Q ss_pred hhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc
Q 019237 232 LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309 (344)
Q Consensus 232 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 309 (344)
.+..+.+|+.+.+..+ ++.....+|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 3334445666666543 33233456677777777777644 44333456777777777777655 4433334454433
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.2e-08 Score=86.48 Aligned_cols=25 Identities=0% Similarity=-0.158 Sum_probs=16.8
Q ss_pred CCCccccceEEcCCCCcEEEEEcCC
Q 019237 37 RDCCKWRGVRCSNKTGHVKVLNLRR 61 (344)
Q Consensus 37 ~~~c~~~~~~c~~~~~~l~~l~l~~ 61 (344)
...|.|.|+.|...+.++..+...+
T Consensus 75 ~~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 75 SALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHHHhcCcEEECCCCCEEEEEEecC
Confidence 3468999999976555665554433
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.41 E-value=1.8e-06 Score=78.01 Aligned_cols=99 Identities=14% Similarity=0.242 Sum_probs=60.6
Q ss_pred ccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC
Q 019237 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC 285 (344)
Q Consensus 206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 285 (344)
.|..+..|+.+.+..+.. .+....+..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++.....+|.+|.
T Consensus 260 aF~~c~~L~~i~lp~~~~---~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV---SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCC---EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeeecccccEEecccccc---eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 456667788887765433 34445556666788887753 344344556777788888887654 4433345677778
Q ss_pred CCCEEeCCCCcCccccchHHhhccC
Q 019237 286 SLNRLFLPHNKLSGELSEMIQNLSG 310 (344)
Q Consensus 286 ~L~~L~L~~n~l~~~~~~~~~~l~~ 310 (344)
+|+.+.|..+ ++......|.+..+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCC
Confidence 8888887544 44333445555443
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=1.6e-06 Score=78.31 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=119.0
Q ss_pred chhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCC-------
Q 019237 77 SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLG------- 149 (344)
Q Consensus 77 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~------- 149 (344)
..+|.++++|+.+.+..+.. .. -...|..+.+|+.+.+..+ +.......+.++..|+.+.+..+......
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~-~I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSME-TL-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCC-EE-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCccc-ee-ccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCC
Confidence 34677788888888865432 21 2345666777777777633 33334445556666666555443211000
Q ss_pred -------------chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEE
Q 019237 150 -------------SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216 (344)
Q Consensus 150 -------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 216 (344)
....+..+..|+.+.+..+...-.. ..+..+..++.+......+. ...+..+.+|+.+
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~---~~F~~~~~l~~~~~~~~~i~------~~~F~~~~~L~~i 302 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGG---SLFYNCSGLKKVIYGSVIVP------EKTFYGCSSLTEV 302 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECS---CTTTTCTTCCEEEECSSEEC------TTTTTTCTTCCEE
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcceeec---cccccccccceeccCceeec------ccccccccccccc
Confidence 0022333444444444433221111 12344444554444333211 1245566888888
Q ss_pred EcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237 217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295 (344)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 295 (344)
.+..+ + ..+....+..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus 303 ~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 303 KLLDS-V--KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccc-c--ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88665 3 2455666777779999999754 55455678999999999999877 55455668999999999998654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3.7e-07 Score=72.01 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=44.6
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC-cCCcccccC----CCCcEEEccCCC-CCCCCchhhhhcCC
Q 019237 85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRPFQYL----SGLVYLRLENSN-LFSLGSLEWLSHLS 158 (344)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~~~~~~~l----~~L~~L~ls~~~-l~~~~~~~~l~~~~ 158 (344)
.|+.||++++.++..+ ...+..+++|++|+|++|...+ ..-..+..+ ++|++|++++|. ++ ......+..++
T Consensus 62 ~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcCC
Confidence 4666666666655542 2334556666666666664322 211223322 356677776664 43 33334556667
Q ss_pred CCCEEEccccc
Q 019237 159 SLRHLDLSYIN 169 (344)
Q Consensus 159 ~L~~L~l~~~~ 169 (344)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777665
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=2.3e-06 Score=67.46 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=40.5
Q ss_pred CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC----CCCCEEEccccccCCCCchHHHHhhccc
Q 019237 110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL----SSLRHLDLSYINLTKSSDWFQVVAKLRS 185 (344)
Q Consensus 110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 185 (344)
+|++|++++|.+....-..+..+++|++|+|++|...+......+..+ ++|++|++++|.-..... ...+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCCC
Confidence 466666666655444444455566666666666642222222334332 245555555553221111 123444555
Q ss_pred CcEEEecCCC
Q 019237 186 LKTLVLRSCA 195 (344)
Q Consensus 186 L~~L~l~~~~ 195 (344)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.6e-06 Score=73.41 Aligned_cols=83 Identities=23% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCCCCcEEEccCCcCCC--cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC----c-hHHH
Q 019237 107 SLSRLRYLNLSCGTSLL--KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS----D-WFQV 179 (344)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~-~~~~ 179 (344)
.+++|+.|+|++|.+.+ .++..+..+++|++|+|++|.+........+..+ +|++|++++|.+.... . ....
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 45666666666666655 3444455666677777777766654332333333 6777777777665421 0 1134
Q ss_pred HhhcccCcEEE
Q 019237 180 VAKLRSLKTLV 190 (344)
Q Consensus 180 l~~~~~L~~L~ 190 (344)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56777777764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=8.8e-05 Score=66.87 Aligned_cols=109 Identities=12% Similarity=0.199 Sum_probs=75.2
Q ss_pred HHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhh
Q 019237 179 VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258 (344)
Q Consensus 179 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 258 (344)
.+..+..|+.+.+..... ... ...+..+..|+.+.+... + ..+....+..+.+|+.+.+..+ ++.....+|.
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~---~~aF~~c~~L~~i~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIG---TGAFMNCPALQDIEFSSR-I--TELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EEC---TTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eeeecccccEEecccccc-eec---CcccccccccccccCCCc-c--cccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 456677888887764432 111 234666788888888643 3 2556667777778999988754 4434466788
Q ss_pred cCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCc
Q 019237 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296 (344)
Q Consensus 259 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 296 (344)
+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8889999988655 554456678888999999988764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=6.2e-05 Score=67.42 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=42.8
Q ss_pred cccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCC
Q 019237 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS 286 (344)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 286 (344)
+..+.+|+.+.+..+ + ..+....+..+.+|+.+.+..+.++.....+|.++.+|+.+.|..+ ++.....+|.++.+
T Consensus 259 F~~~~~l~~i~l~~~-i--~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-V--KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC-C--SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cceeehhcccccccc-c--eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 334445555555332 1 1333344455556666666655555334455666666666666543 33223345556666
Q ss_pred CCEEeCCC
Q 019237 287 LNRLFLPH 294 (344)
Q Consensus 287 L~~L~L~~ 294 (344)
|+.+.+..
T Consensus 335 L~~i~ip~ 342 (379)
T 4h09_A 335 LSTISYPK 342 (379)
T ss_dssp CCCCCCCT
T ss_pred CCEEEECC
Confidence 66665543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=2e-05 Score=63.30 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=51.9
Q ss_pred CcccEEEcCCCCCCC--CCCcchhhhccCCccEEEccCCcCcC----CchHhhhcCCCCCEEEccCCc---cCC----Cc
Q 019237 211 TSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRG----SIPEAFQHMVSLKSLHLTDNE---LEG----GI 277 (344)
Q Consensus 211 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~---~~~----~~ 277 (344)
++|+.|+|++|.+.+ ..-.....+....|++|+|+.|.|.+ .+.+.+...+.|++|+|++|. +.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 556666666666632 11122233344567777777777764 334556666778888887653 332 23
Q ss_pred cccccCCCCCCEEeCCCCcCc
Q 019237 278 PKFFGNMCSLNRLFLPHNKLS 298 (344)
Q Consensus 278 ~~~l~~l~~L~~L~L~~n~l~ 298 (344)
...+...+.|+.|+++.|...
T Consensus 150 a~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhCCCcCeEeccCCCcc
Confidence 445666778888888766543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=1.5e-05 Score=64.07 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=46.7
Q ss_pred ccchhhhcCCCCCEEeCCCC-CCCCCC---ccccccCCCCCcEEEccCCcCCCcCCccc----ccCCCCcEEEccCCCCC
Q 019237 75 TISPALLKLHDLRHLDLSNN-HFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVPRPF----QYLSGLVYLRLENSNLF 146 (344)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~----~~l~~L~~L~ls~~~l~ 146 (344)
.+...+.+-+.|+.|+|+++ .+...+ +.+.+.....|+.|+|++|.+.......+ ..-..|++|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44444555667777777764 554321 23444555666666666666553322222 23355556666655555
Q ss_pred CCCch---hhhhcCCCCCEEEccc
Q 019237 147 SLGSL---EWLSHLSSLRHLDLSY 167 (344)
Q Consensus 147 ~~~~~---~~l~~~~~L~~L~l~~ 167 (344)
..... ..+...+.|++|+|++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCC
Confidence 32221 2233334455555544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0017 Score=58.00 Aligned_cols=146 Identities=13% Similarity=0.176 Sum_probs=95.2
Q ss_pred cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhc
Q 019237 127 RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWH 206 (344)
Q Consensus 127 ~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 206 (344)
..+..+..|+.+.+..+ +..... ..+..+.+|+.+.+..+ +..... ..+..+..|+.+.+..+ +.... ...
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~-~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~~i~l~~~-i~~i~---~~a 281 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGD-GAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALKTLNFYAK-VKTVP---YLL 281 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECT-TTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCCEEEECCC-CSEEC---TTT
T ss_pred cccccccccceeeeccc-eeEEcc-ccccCCccceEEEcCCC-ccEeCc--cccceeehhcccccccc-ceecc---ccc
Confidence 34455667777776543 222222 45667788888888655 222221 35677888888888643 33222 235
Q ss_pred cccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC
Q 019237 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC 285 (344)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 285 (344)
|..+.+|+.+.+..+.+ ..+....+..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus 282 F~~c~~L~~i~l~~~~i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAI--ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTCTTCCEEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccccc--ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77789999999988777 4566677788889999999754 55344668889999999888655 4433345565554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0069 Score=45.06 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=19.6
Q ss_pred CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCcc
Q 019237 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL 273 (344)
Q Consensus 238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 273 (344)
++++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455556655555544444455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.012 Score=43.79 Aligned_cols=37 Identities=16% Similarity=0.017 Sum_probs=18.1
Q ss_pred CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCC
Q 019237 110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLF 146 (344)
Q Consensus 110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~ 146 (344)
+|++|+|++|.+...-+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3455555555444444444444555555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.03 E-value=16 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=15.3
Q ss_pred ccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccC
Q 019237 105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN 142 (344)
Q Consensus 105 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~ 142 (344)
|..+..|+.+.|- ..+.......|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP-~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQ-PNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEEC-TTSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcC-CchheEcHHHHhccCCccEEEEcC
Confidence 3334444444443 223333333444444444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.93 E-value=52 Score=22.45 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=35.7
Q ss_pred ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc
Q 019237 71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT 120 (344)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 120 (344)
.++..-..+|.++..|+.+.|..+ ++.. -...|..+.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEcCCC
Confidence 555555667899999999999765 3333 45678889999999997543
Done!