BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019238
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 3/183 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S LV +A G+EEME +I D+LRRA V VA + + S V+++ D + + A
Sbjct: 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
+D++VLPGGLGG+ A +S + ++L+ Q+ AICA+P VL HG+ GK
Sbjct: 65 SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKS 123
Query: 280 ATAFPAMCNKL-SNQSEIENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
T++P+M +L +N S ++++ VV DGNL+TSRGPGT+ EFAL I E+ G+ K E+AK
Sbjct: 124 LTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAK 183
Query: 338 ILL 340
LL
Sbjct: 184 GLL 186
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 34/165 (20%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADA----LVSNCRDACGMPG--- 53
ME +I DVLRR+G V VA + V V+I+ D + S+ D +PG
Sbjct: 19 MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78
Query: 54 -ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG---------------- 96
+ + ES ++ +++ Q S G L AAIC V L G+ G
Sbjct: 79 GSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSLTSYPSMKPQLVNN 137
Query: 97 ---------LKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVS 132
+KDG ++T+RGPGT EF + + E+L GK K EV+
Sbjct: 138 YSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVA 182
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
S LV +A GSEE EAV ID+L R V ASVA + +C VKL+AD + E
Sbjct: 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61
Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277
A YD+IVLPGG+ GA+ F S LV +K+ S R AICA+PA VL PH +
Sbjct: 62 VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121
Query: 278 KKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
T FP + +K+ + ++ RVV D L+TS+GPGT+++F L I++ GR KA E+
Sbjct: 122 GNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEV 181
Query: 336 AKILLF 341
A L+
Sbjct: 182 ASQLVM 187
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 35/174 (20%)
Query: 2 EAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CGM 51
EAV TID+L R G V ASV + L + GVK++ADA + D G+
Sbjct: 17 EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76
Query: 52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL--------GSWGLLKGLKDG--- 100
GA ++S +L VK+ GR+ AAIC A L G+ LKD
Sbjct: 77 KGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA 136
Query: 101 --------------KVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRAN 140
K++T++GPGT ++F + +++ L G+ KA EV+ VM A
Sbjct: 137 EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAG 190
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D+LRRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
L+
Sbjct: 185 KAPLVL 190
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DVLRR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S +ILVP+A+GSEE E VII+D L RA V A+V DKL++ S V L A+ ++ +
Sbjct: 9 SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
++D + LPGG+GGAQAFA S L+ ++ + + AICA+PALV G +
Sbjct: 69 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGAR 128
Query: 280 ATAFPAMCNKLSNQSEIENRV--VVDGNLVTSRGPGTSMEF 318
T P + + ++ RV +L+TS+GPGT++EF
Sbjct: 129 XTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG---- 53
E VI +D L R+G V A+V +L+V GV + A+ + C DA +PG
Sbjct: 24 ETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83
Query: 54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
A +S L +++ + G+L AAIC A+ G +
Sbjct: 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDHIPSER 143
Query: 99 ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
++T++GPGT +EF +A + L G A V+ V+ E +
Sbjct: 144 LSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVLHPQQLTELS 201
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGCGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
L+
Sbjct: 181 KAPLVL 186
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLARDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
M+ VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 MDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
M+ VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 MQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ ICA P +L H + G
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
L+
Sbjct: 185 KAPLVL 190
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L A IC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ ICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L A IC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S +ILVP+A+GSEE E VII+D L RA V A+V DKL++ S V L A+ ++ +
Sbjct: 9 SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
++D + LPGG+GGAQAFA S L+ ++ + + AI A+PALV G +
Sbjct: 69 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGAR 128
Query: 280 ATAFPAMCNKLSNQSEIENRV--VVDGNLVTSRGPGTSMEF 318
T P + + ++ RV +L+TS+GPGT++EF
Sbjct: 129 XTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG---- 53
E VI +D L R+G V A+V +L+V GV + A+ + C DA +PG
Sbjct: 24 ETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83
Query: 54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
A +S L +++ + G+L AAI A+ G +
Sbjct: 84 AQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDHIPSER 143
Query: 99 ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
++T++GPGT +EF +A + L G A V+ V+ E +
Sbjct: 144 LSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVLHPQQLTELS 201
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
L+
Sbjct: 181 KAPLVL 186
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGS 120
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 121 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Query: 336 AKILLF 341
L+
Sbjct: 181 KAPLVL 186
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N EN V DG ++TSRGPGTS +FALAIVE G+ A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
L+
Sbjct: 185 KAPLVL 190
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT +F +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EE E VI +D+ RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG--- 53
E VI +DV RR+G V VA + + V V I DA + + + D +PG
Sbjct: 18 ETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77
Query: 54 -ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------- 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 78 GAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKXXNGG 137
Query: 90 --SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 138 HYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EE E VI +D+ RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG--- 53
E VI +DV RR+G V VA + + V V I DA + + + D +PG
Sbjct: 18 ETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77
Query: 54 -ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------- 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 78 GAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKXXNGG 137
Query: 90 --SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 138 HYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M+ VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M+ VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 124
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS +FALAIVE G+ A ++
Sbjct: 125 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQV 184
Query: 336 AKILLF 341
L+
Sbjct: 185 KAPLVL 190
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT +F +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L H + G
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGS 121
Query: 279 KATAFPAMCNKLSNQSEI---ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALEL 335
K T P +K+ N ENRV DG ++TSRGPGTS EFALAIVE G+ A ++
Sbjct: 122 KVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181
Query: 336 AKILLF 341
L+
Sbjct: 182 KAPLVL 187
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
++L AN E++E + L+ V +AS ++ I + D+ D+
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASF-ERGTITGKHGYSVKVDLTFDKVNPE 60
Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
+D +VLPGG + ++K V++ +K +P +IC P +++ G+L+G+K T
Sbjct: 61 EFDALVLPGGRA-PERVRLNEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRKGT 118
Query: 282 AFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGP 312
++P + + N ++ VVVDGN V+SR P
Sbjct: 119 SYPGIKDDXINAGVEWVDAEVVVDGNWVSSRVP 151
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPGA-- 54
+E + L+ G +V +AS E+ + HG + D DA +PG
Sbjct: 14 VELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA 72
Query: 55 -TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPME 113
++ +E SI +K S+G+ A+IC + + + G+L+G K T PG +
Sbjct: 73 PERVRLNEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRK-----GTSYPGIKDD 126
Query: 114 FVVALVEQL 122
+ A VE +
Sbjct: 127 XINAGVEWV 135
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A P L + GL
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP-LTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
K+ T P++ +L ++ VV++ NL+TS+GPGT+M F L ++E+ ++K
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
+ K L
Sbjct: 186 AVYKSL 191
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S ++L A+G E++E + + ++ V VAS + +I + D+ +E
Sbjct: 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQ-RGKITGKHGYSVNVDLTFEEVD 60
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279
+D +VLPGG + ++K V + ++ E ++P +IC P +++ +LKG++
Sbjct: 61 PDEFDALVLPGG-KAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAK-VLKGRR 118
Query: 280 ATAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPG 313
T+ + + + N I+ VVVDGN V+SR PG
Sbjct: 119 GTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPG 154
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A L + GL
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-TLTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
K+ T P++ +L ++ VV++ NL+TS+GPGT+M F L ++E+ ++K
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
+ K L
Sbjct: 186 AVYKSL 191
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVV-ASVADKLEILASCQVKLVADMLIDEAAK 220
++ + I E+ E +I + L++A VVV S ++ ++ AD EA
Sbjct: 12 KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRGRLSTQADGTTTEAIA 71
Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKA 280
+D +V+PGG ++ V +++ E + A+ P +++E LL+GK+A
Sbjct: 72 SEFDAVVIPGGXA-PDKXRRNPNTVRFVQEAXEQGKLVAAVXHGPQVLIEGD-LLRGKQA 129
Query: 281 TAFPAMCNKLSNQ--SEIENRVVVDGNLVTSRGPGTSMEFALAIVEK--FFGRNKAL 333
T F A+ N ++ +VVDGNL+TSR PG F AI+ + + G++ AL
Sbjct: 130 TGFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAAL 186
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASPALVLEPHGLL 275
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A L + GL
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-VLTAKTSGL- 125
Query: 276 KGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKAL 333
K+ T P++ +L ++ VV++ NL+TS+GPGT+M F L ++E+ ++K
Sbjct: 126 PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYN 185
Query: 334 ELAKIL 339
+ K L
Sbjct: 186 AVYKSL 191
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 225 LIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP 284
++ +PGG G + +N + + ++ ++C AL L G+L GK+AT
Sbjct: 68 ILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSAL-LSKAGILNGKRATTNK 125
Query: 285 AMCNKLSNQSEI-----ENRVVVDGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAK 337
++ Q+E E R V DGN+ TS G ++ L +E G+ KALE+++
Sbjct: 126 RSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISR 183
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 95 KGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVS 132
+ +KDG + T+ G ++ + +E L GK KA E+S
Sbjct: 145 RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEIS 182
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
D+I +PGG G A + + + +++Q R ++C S +LVL GLL+GK+AT
Sbjct: 67 DVICIPGGTG-VGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
A L+ I RVV DGNL+T G ++FAL + + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
D+I +PGG G A + + + +++Q R ++C +LVL GLL+GK+AT
Sbjct: 67 DVICIPGGTG-VGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
A L+ I RVV DGNL+T G ++FAL + + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
D+I +PGG G A + + + +++Q R Y A+ +LVL GLL+GK+AT
Sbjct: 67 DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
A L+ I RVV DGNL+T G ++FAL + + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
D+I +PGG G A + + + +++Q R Y ++ +LVL GLL+GK+AT
Sbjct: 67 DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
A L+ I RVV DGNL+T G ++FAL + + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF 283
D+I +PGG G A + + + +++Q R Y + +LVL GLL+GK+AT
Sbjct: 67 DVICIPGGTG-VGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTH 124
Query: 284 PAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
A L+ I RVV DGNL+T G ++FAL + + F
Sbjct: 125 WAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELF 170
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 215 IDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
D+ SYD +V+PGG + A ++ ++N++K+ S +P +I +L G+
Sbjct: 275 FDDLVSSSYDALVIPGGRA-PEYLALNEHVLNIVKEFXNSEKPVASIXHG-QQILAAAGV 332
Query: 275 LKGKKATAFPA--MCNKLSNQSEIE----NRVVVDGNLVTSRGPGTSMEF 318
LKG+K TA+PA + L + +E +R DGNLVT EF
Sbjct: 333 LKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEF 382
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 215 IDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
DE YD +V+PGG + A + +V ++K+ S +P +I L+L
Sbjct: 82 FDEVDLSKYDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASIXHG-QLILAAADT 139
Query: 275 LKGKKATAF----PAMCNKLSNQSE--IENRVVVDGNLVTSRGPGTSMEFALAIVEKFFG 328
+ G+K TA+ P++ + E + VVDG+L+T+ EF V+ G
Sbjct: 140 VNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGG 199
Query: 329 R 329
+
Sbjct: 200 K 200
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVV-VASVADKLEILASCQVKLVADMLIDEA 218
S +I V I + E+ E D R+A V+ + A K + + D IDE
Sbjct: 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 82
Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278
+D ++LPGG + V + S +P AIC P L++ +++G+
Sbjct: 83 TPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD-VIRGR 140
Query: 279 KATAFPAMCNKLSNQSE--IENRVVVDGN-LVTSRGP 312
K TA + + N + VVVD + LVTSR P
Sbjct: 141 KLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTP 177
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
Q K D ++ E YD ++LPGG + + ++ ++ +P AI P
Sbjct: 59 QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGP 118
Query: 266 ALVLEPHGLLKGKKATAFPAMCNKLS--NQSEIENRVVVDGNLVTSRGPGTSMEFALAIV 323
L G+ +G K T++ ++ +L+ ++ V D +VTSR P F IV
Sbjct: 119 -WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIV 177
Query: 324 EKF 326
E+F
Sbjct: 178 EEF 180
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 224 DLIVL--PGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
DL VL PGG G A A + + + + ++C S +L+L GLLKG KAT
Sbjct: 84 DLTVLFAPGGTDGTLAAASDAETLAFXADRGARAKYITSVC-SGSLILGAAGLLKGYKAT 142
Query: 282 AFPAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326
+ + + L+ I E RVV D N +T G ++F L+ V +
Sbjct: 143 SHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSXVAEL 189
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 16/184 (8%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
+I + +A + E ++ R +V + D + + +K+ D D +
Sbjct: 3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGXPVTSXGGLKVTPDTSYDALDPV 62
Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 281
D +V+PGGL + A L ++K+ ++ +R ICA+ A L G+L T
Sbjct: 63 DIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAA-ASALGGTGVLNDVAHT 119
Query: 282 --------AFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALAIVEK--FFGRNK 331
A+PA + + + R V DG +VT+ G + FA+ I++ FG
Sbjct: 120 GNALASHKAYPAYRGEAHYRD--QPRAVSDGGVVTAAG-SAPVSFAVEILKSLGLFGPEA 176
Query: 332 ALEL 335
EL
Sbjct: 177 EAEL 180
>pdb|3F5D|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Bacillus Subtilis
Length = 206
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS 291
+GG +KKL++ +K + N P AIC + L +GLL T K
Sbjct: 70 IGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDF-LAKNGLLNNHSHTGNFVYLWKDY 128
Query: 292 NQ-----SEIENRVVVDGNLVTSRGPGTSMEFALAIVE 324
Q S +E + V D NLVT+ G +EF I+E
Sbjct: 129 KQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILE 165
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Query: 223 YDLIVLPGGLGGAQAFA------KSKKLV-----NMLKKQKESNRPYGAICASPALVL 269
+D++V+PGG G A+ F+ K + N +++ + +P GA+C SPA+V+
Sbjct: 108 FDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVV 165
>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
From Shewanella Loihica Pv-4 At 1.76 A Resolution
Length = 236
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 181 DILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240
D+L R + V + K E + + D + E + D++++ G G A +
Sbjct: 41 DLLGRTSDSWTVRILGTKPEHHSQLGXTVKTDGHVSEVKE--QDVVLITSGYRGIPAALQ 98
Query: 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ-SEIEN- 298
+ + LK S + G+ICA + VL GLLKGKK T P L ++++
Sbjct: 99 DENFXSALKLDP-SRQLIGSICAG-SFVLHELGLLKGKKLTTNPDAKAVLQGXGGDVQDL 156
Query: 299 RVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
+V++GN+ T+ G + + + E+ F
Sbjct: 157 PLVIEGNIATAGGCLSLLYLVGWLAERLF 185
>pdb|4HCJ|A Chain A, Crystal Structure Of ThijPFPI DOMAIN PROTEIN FROM
BRACHYSPIRA Murdochii
Length = 177
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 212 DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271
D+L E + +D +V GG+G + + L K N+ A S ++
Sbjct: 59 DLLFSEVDAVEFDAVVFVGGIGCITLWDDWR--TQGLAKLFLDNQKIVAGIGSGVVIXAN 116
Query: 272 HGLLKGKKATAFPAMCNKL--SNQSEIENRVVVDGNLVTSRGPGTSMEFALAIV 323
+L+ T A + + N + VVV GN+VT+ GP +S +FA A+V
Sbjct: 117 AKILEEINVTCLSADESHVRHGNANIXSENVVVSGNIVTANGPTSSKDFANAVV 170
>pdb|3ER6|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|B Chain B, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|C Chain C, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|D Chain D, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|E Chain E, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|F Chain F, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
Length = 209
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 273 GLLKGKKA---TAFPAMCNKLSNQSEI--ENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327
GLL+ KA + F + +L + + E + ++DGN+ S GP + L IVE++F
Sbjct: 125 GLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYF 184
Query: 328 GRN 330
G++
Sbjct: 185 GKH 187
>pdb|3EFE|A Chain A, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|B Chain B, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|C Chain C, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|D Chain D, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|E Chain E, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|F Chain F, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
Length = 212
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 191 VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK 250
V+ A+K I +++ D+ +DE S DL++LPGG ++ + ++ + +
Sbjct: 43 VITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWSEEI--HQPILERIGQ 100
Query: 251 QKESNRPYGAICASPALVLEPHGLLKGKKATA----FPAM-CNKLSNQSEIE-NRVVVDG 304
+ AIC + L G L +K T+ + M C + E V D
Sbjct: 101 ALKIGTIVAAICGATD-ALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDA 159
Query: 305 NLVTSRGPGTSMEFALAIVEK 325
NLVT+ G +EFA+ +++K
Sbjct: 160 NLVTASGIA-PLEFAMEVLKK 179
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-----G 273
A Y L+ + GG G F +K L N+ + + GA+C PA++ H
Sbjct: 102 APHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDS 161
Query: 274 LLKGKKATAF 283
++K K T F
Sbjct: 162 VIKDKTVTGF 171
>pdb|1N57|A Chain A, Crystal Structure Of Chaperone Hsp31
Length = 291
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
K +AD++ A Y I +PGG G +S+ + L+ +++R ++C PA
Sbjct: 131 KKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA 190
Query: 268 VLE-PHG--LLKGKKATAFPAMCNK 289
L HG L G AFP +K
Sbjct: 191 FLALRHGDNPLNGYSICAFPDAADK 215
>pdb|1ONS|A Chain A, Crystal Structure Of Escherichia Coli Heat Shock Protein
Yedu
Length = 282
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
K +AD++ A Y I +PGG G +S+ + L+ +++R ++C PA
Sbjct: 130 KKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA 189
Query: 268 VLE-PHG--LLKGKKATAFPAMCNK 289
L HG L G AFP +K
Sbjct: 190 FLALRHGDNPLNGYSICAFPDAADK 214
>pdb|1IZY|A Chain A, Crystal Structure Of Hsp31
pdb|1IZY|B Chain B, Crystal Structure Of Hsp31
Length = 283
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
K +AD++ A Y I +PGG G +S+ + L+ +++R ++C PA
Sbjct: 131 KKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA 190
Query: 268 VLE-PHG--LLKGKKATAFPAMCNK 289
L HG L G AFP +K
Sbjct: 191 FLALRHGDNPLNGYSICAFPDAADK 215
>pdb|1PV2|A Chain A, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|B Chain B, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|C Chain C, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|D Chain D, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|E Chain E, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|F Chain F, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|G Chain G, Native Form 2 E.Coli Chaperone Hsp31
pdb|1PV2|H Chain H, Native Form 2 E.Coli Chaperone Hsp31
Length = 283
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
K +AD++ A Y I +PGG G +S+ + L+ +++R ++C PA
Sbjct: 131 KKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA 190
Query: 268 VLE-PHG--LLKGKKATAFPAMCNK 289
L HG L G AFP +K
Sbjct: 191 FLALRHGDNPLNGYSICAFPDAADK 215
>pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
Length = 397
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 199 LEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE----- 253
L+ +A + K+ + DE+A+ +DL+ + K++K +LK Q+
Sbjct: 229 LDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLAR 288
Query: 254 -SNRPYGAIC-------ASPA--LVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVD 303
+N P C ASPA L+ + + + A P + N +I+N + ++
Sbjct: 289 LANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALN 348
Query: 304 ------GNLVTSRGPGTSMEFALAIVEKFFGRNKA 332
G L + GPG +E +V + KA
Sbjct: 349 VPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKA 383
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 182 ILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241
+LR AK ++ V+ + A V+ V +++ + + +DLI + G +GG+
Sbjct: 180 LLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGS---ISD 236
Query: 242 KKLVNMLKKQKESNRPYGAICASP 265
KL+N + K+ + P C P
Sbjct: 237 SKLINGVILDKDFSHPQMPKCVLP 260
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 147 IAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ 206
+ + N Q + ++ I+V + G +I+ID+L N+ + ++I + Q
Sbjct: 433 LDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLME---NISTKGLDCDIDIQKTIQ 489
Query: 207 -VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
V+ ++ A+ + + + AQ +KK + +L+ QK YG I P
Sbjct: 490 MVRAQRSGMVQTEAQYKFIYVAI------AQFIETTKKKLEVLQSQKGQESEYGNITYPP 543
Query: 266 AL 267
A+
Sbjct: 544 AM 545
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,435,532
Number of Sequences: 62578
Number of extensions: 374227
Number of successful extensions: 1062
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 120
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)