Query 019238
Match_columns 344
No_of_seqs 304 out of 2505
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01383 not_thiJ DJ-1 family 100.0 2E-34 4.2E-39 244.6 18.9 175 162-337 1-178 (179)
2 PRK11574 oxidative-stress-resi 100.0 6.8E-33 1.5E-37 238.4 20.9 185 159-343 1-189 (196)
3 cd03136 GATase1_AraC_ArgR_like 100.0 2.9E-33 6.4E-38 238.6 16.8 174 163-342 1-185 (185)
4 cd03139 GATase1_PfpI_2 Type 1 100.0 2.3E-33 4.9E-38 238.9 15.4 175 163-342 1-183 (183)
5 cd03137 GATase1_AraC_1 AraC tr 100.0 3.8E-33 8.3E-38 238.3 16.2 175 163-342 1-187 (187)
6 cd03138 GATase1_AraC_2 AraC tr 100.0 9E-33 2E-37 237.6 17.1 176 163-342 1-195 (195)
7 cd03135 GATase1_DJ-1 Type 1 gl 100.0 2.2E-32 4.8E-37 228.4 17.9 162 163-326 1-163 (163)
8 TIGR01382 PfpI intracellular p 100.0 4.3E-31 9.3E-36 221.3 16.4 162 162-326 1-165 (166)
9 cd03134 GATase1_PfpI_like A ty 100.0 5.3E-31 1.2E-35 220.5 15.0 160 162-324 1-164 (165)
10 COG4977 Transcriptional regula 100.0 8.8E-31 1.9E-35 236.0 16.9 180 159-343 9-199 (328)
11 PRK09393 ftrA transcriptional 100.0 2.8E-30 6.1E-35 238.9 17.8 182 155-342 4-197 (322)
12 KOG2764 Putative transcription 100.0 1.4E-30 3E-35 217.3 13.7 183 160-342 5-189 (247)
13 PF13278 DUF4066: Putative ami 100.0 8.1E-30 1.8E-34 213.5 15.2 154 166-324 1-166 (166)
14 cd03169 GATase1_PfpI_1 Type 1 100.0 2.1E-29 4.5E-34 213.8 16.1 163 162-326 1-180 (180)
15 cd03140 GATase1_PfpI_3 Type 1 100.0 3.3E-29 7.2E-34 210.5 14.8 160 163-327 1-167 (170)
16 KOG2764 Putative transcription 100.0 5E-28 1.1E-32 202.0 14.2 196 1-232 19-247 (247)
17 cd03147 GATase1_Ydr533c_like T 99.9 2.7E-27 5.9E-32 206.8 13.0 157 169-326 20-231 (231)
18 COG0693 ThiJ Putative intracel 99.9 1.2E-25 2.5E-30 192.2 16.5 170 160-330 2-186 (188)
19 cd03141 GATase1_Hsp31_like Typ 99.9 2.1E-26 4.4E-31 201.1 12.0 157 168-326 17-221 (221)
20 PRK04155 chaperone protein Hch 99.9 8.8E-26 1.9E-30 202.4 16.0 166 160-327 49-282 (287)
21 cd03148 GATase1_EcHsp31_like T 99.9 1.1E-25 2.4E-30 196.8 13.2 160 166-327 18-232 (232)
22 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 2.8E-25 6.1E-30 182.1 13.0 137 189-326 1-146 (147)
23 PRK11780 isoprenoid biosynthes 99.9 4.8E-23 1E-27 178.1 14.3 152 160-313 1-193 (217)
24 TIGR01383 not_thiJ DJ-1 family 99.9 2.9E-23 6.4E-28 175.9 12.8 132 1-133 13-178 (179)
25 PRK11574 oxidative-stress-resi 99.9 1.2E-22 2.5E-27 174.8 14.2 140 1-140 16-190 (196)
26 cd03137 GATase1_AraC_1 AraC tr 99.9 7.1E-23 1.5E-27 174.8 12.8 134 1-137 12-186 (187)
27 cd03138 GATase1_AraC_2 AraC tr 99.9 9.1E-23 2E-27 175.3 12.3 134 2-137 13-194 (195)
28 cd03139 GATase1_PfpI_2 Type 1 99.9 1.2E-22 2.5E-27 172.9 12.7 135 1-138 12-183 (183)
29 cd03136 GATase1_AraC_ArgR_like 99.9 9.5E-23 2.1E-27 173.7 11.9 133 2-138 13-185 (185)
30 cd03132 GATase1_catalase Type 99.9 1E-21 2.2E-26 160.1 14.7 114 160-275 1-114 (142)
31 COG4977 Transcriptional regula 99.9 6.4E-22 1.4E-26 178.7 14.5 155 15-186 45-232 (328)
32 cd03133 GATase1_ES1 Type 1 glu 99.9 4.6E-22 9.9E-27 170.8 12.2 152 168-321 11-201 (213)
33 cd03135 GATase1_DJ-1 Type 1 gl 99.9 1.4E-21 3E-26 163.1 11.8 119 2-122 13-163 (163)
34 PRK09393 ftrA transcriptional 99.8 3E-20 6.5E-25 171.9 13.4 137 1-141 23-200 (322)
35 PF13278 DUF4066: Putative ami 99.8 2.1E-20 4.6E-25 156.4 10.0 116 2-120 10-166 (166)
36 TIGR01382 PfpI intracellular p 99.8 4.9E-20 1.1E-24 154.2 10.8 119 1-122 13-165 (166)
37 cd03140 GATase1_PfpI_3 Type 1 99.8 7.9E-20 1.7E-24 153.5 11.3 117 1-122 12-166 (170)
38 cd03134 GATase1_PfpI_like A ty 99.8 1.6E-19 3.5E-24 151.0 10.0 117 2-120 14-164 (165)
39 cd03147 GATase1_Ydr533c_like T 99.8 1.1E-19 2.5E-24 158.8 6.8 121 1-122 25-231 (231)
40 cd03169 GATase1_PfpI_1 Type 1 99.8 6.6E-19 1.4E-23 149.3 10.8 120 1-122 13-180 (180)
41 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.8 2.6E-18 5.6E-23 140.8 10.6 106 16-122 1-146 (147)
42 cd03148 GATase1_EcHsp31_like T 99.8 4.1E-18 8.8E-23 149.1 10.1 121 1-122 26-231 (232)
43 PRK04155 chaperone protein Hch 99.7 3.3E-18 7.2E-23 153.6 8.3 122 1-124 77-283 (287)
44 cd03141 GATase1_Hsp31_like Typ 99.7 4.1E-18 8.9E-23 148.8 8.2 120 1-122 23-221 (221)
45 PRK11249 katE hydroperoxidase 99.7 1.2E-16 2.6E-21 158.2 16.0 151 124-276 548-711 (752)
46 COG0693 ThiJ Putative intracel 99.7 2.8E-16 6E-21 134.2 12.0 125 1-126 16-186 (188)
47 cd03132 GATase1_catalase Type 99.6 5.2E-15 1.1E-19 120.5 11.4 115 2-122 16-138 (142)
48 cd03133 GATase1_ES1 Type 1 glu 99.5 3E-14 6.5E-19 122.5 8.6 96 1-98 17-147 (213)
49 PRK11780 isoprenoid biosynthes 99.5 1.5E-13 3.3E-18 119.0 8.7 96 1-98 20-150 (217)
50 PRK03619 phosphoribosylformylg 99.2 2.4E-10 5.3E-15 99.5 11.0 95 161-279 1-102 (219)
51 cd01740 GATase1_FGAR_AT Type 1 99.1 3.5E-10 7.5E-15 99.9 9.7 128 163-310 1-136 (238)
52 PRK01175 phosphoribosylformylg 99.0 2.1E-09 4.5E-14 95.6 10.8 99 160-277 3-110 (261)
53 PRK11249 katE hydroperoxidase 99.0 2.7E-09 5.9E-14 106.5 12.1 102 2-106 612-721 (752)
54 TIGR01737 FGAM_synth_I phospho 98.9 9.5E-09 2.1E-13 90.1 10.9 94 161-278 1-100 (227)
55 cd01653 GATase1 Type 1 glutami 98.8 4E-08 8.7E-13 74.9 10.1 91 163-267 1-91 (115)
56 PRK13527 glutamine amidotransf 98.7 1.1E-07 2.4E-12 81.8 9.5 92 161-272 1-93 (200)
57 COG0047 PurL Phosphoribosylfor 98.7 1.8E-07 3.9E-12 79.5 10.0 95 160-277 2-102 (231)
58 PRK13526 glutamine amidotransf 98.6 1.8E-07 3.8E-12 78.0 7.8 85 160-271 2-87 (179)
59 cd03128 GAT_1 Type 1 glutamine 98.6 2.9E-07 6.3E-12 66.9 8.0 90 163-266 1-90 (92)
60 TIGR03800 PLP_synth_Pdx2 pyrid 98.5 4E-07 8.6E-12 77.2 7.3 85 162-272 1-86 (184)
61 COG3155 ElbB Uncharacterized p 98.4 7.7E-06 1.7E-10 65.4 12.0 162 160-329 1-205 (217)
62 PF13507 GATase_5: CobB/CobQ-l 98.4 1.2E-06 2.7E-11 77.7 8.2 99 161-278 2-112 (259)
63 cd03130 GATase1_CobB Type 1 gl 98.3 3.3E-06 7.1E-11 72.5 8.7 77 176-272 13-91 (198)
64 PRK13525 glutamine amidotransf 98.2 7E-06 1.5E-10 69.9 8.6 86 160-271 1-87 (189)
65 COG0311 PDX2 Predicted glutami 98.2 5.2E-06 1.1E-10 68.2 6.6 85 161-271 1-87 (194)
66 PLN02832 glutamine amidotransf 98.1 1.6E-05 3.4E-10 70.1 8.4 87 160-272 1-88 (248)
67 PRK13143 hisH imidazole glycer 98.1 1.8E-05 3.8E-10 68.1 8.6 87 161-272 1-87 (200)
68 PRK03619 phosphoribosylformylg 98.1 1.6E-05 3.5E-10 69.3 8.1 75 7-97 18-101 (219)
69 cd01750 GATase1_CobQ Type 1 gl 98.0 2.2E-05 4.8E-10 67.2 8.5 86 163-272 1-88 (194)
70 PRK01077 cobyrinic acid a,c-di 98.0 2.5E-05 5.4E-10 75.7 9.9 91 160-271 245-337 (451)
71 cd01740 GATase1_FGAR_AT Type 1 98.0 2.1E-05 4.5E-10 69.6 8.5 82 6-98 15-105 (238)
72 PRK08250 glutamine amidotransf 98.0 6E-05 1.3E-09 66.5 10.3 94 161-272 1-100 (235)
73 PRK07053 glutamine amidotransf 97.9 9.1E-05 2E-09 65.2 10.1 96 159-272 1-99 (234)
74 cd01749 GATase1_PB Glutamine A 97.9 3.6E-05 7.9E-10 65.2 7.0 84 163-272 1-85 (183)
75 TIGR01857 FGAM-synthase phosph 97.7 0.00012 2.6E-09 77.7 9.2 109 159-278 976-1096(1239)
76 cd01741 GATase1_1 Subgroup of 97.7 0.00015 3.4E-09 61.6 8.5 92 162-272 1-97 (188)
77 COG1797 CobB Cobyrinic acid a, 97.6 0.00092 2E-08 62.7 12.7 91 161-271 246-338 (451)
78 PRK13141 hisH imidazole glycer 97.6 0.00024 5.1E-09 61.4 7.7 85 163-272 2-88 (205)
79 CHL00188 hisH imidazole glycer 97.6 0.00029 6.3E-09 60.9 8.2 87 160-272 1-90 (210)
80 TIGR01737 FGAM_synth_I phospho 97.6 0.0003 6.4E-09 61.8 8.3 75 6-96 17-99 (227)
81 PF01174 SNO: SNO glutamine am 97.6 0.0001 2.2E-09 61.4 4.8 53 216-271 29-83 (188)
82 PLN03206 phosphoribosylformylg 97.5 0.00054 1.2E-08 73.4 10.7 102 159-279 1036-1149(1307)
83 PRK06895 putative anthranilate 97.5 0.00062 1.3E-08 58.0 8.6 84 166-272 5-88 (190)
84 PF07685 GATase_3: CobB/CobQ-l 97.5 0.00016 3.4E-09 59.8 4.7 53 219-272 4-58 (158)
85 PRK06490 glutamine amidotransf 97.5 0.00091 2E-08 59.1 9.5 96 159-272 6-102 (239)
86 PRK01175 phosphoribosylformylg 97.4 0.00052 1.1E-08 61.3 7.8 80 6-96 20-110 (261)
87 cd01744 GATase1_CPSase Small c 97.4 0.00077 1.7E-08 56.8 8.5 74 178-271 11-84 (178)
88 TIGR01735 FGAM_synt phosphorib 97.4 0.00073 1.6E-08 72.8 10.0 102 158-278 1053-1167(1310)
89 PRK05665 amidotransferase; Pro 97.4 0.0014 3.1E-08 57.9 10.2 51 221-272 56-107 (240)
90 TIGR00379 cobB cobyrinic acid 97.4 0.0009 1.9E-08 64.8 9.3 90 161-271 245-336 (449)
91 PRK05297 phosphoribosylformylg 97.4 0.001 2.2E-08 71.8 10.5 100 159-277 1034-1146(1290)
92 TIGR01739 tegu_FGAM_synt herpe 97.3 0.0029 6.3E-08 68.0 13.4 99 159-277 928-1039(1202)
93 KOG3210 Imidazoleglycerol-phos 97.3 0.00099 2.1E-08 53.9 7.5 95 159-271 10-106 (226)
94 PRK13146 hisH imidazole glycer 97.3 0.0015 3.3E-08 56.5 9.0 91 160-273 1-94 (209)
95 PHA03366 FGAM-synthase; Provis 97.3 0.0017 3.6E-08 70.2 10.7 99 158-276 1026-1137(1304)
96 cd03130 GATase1_CobB Type 1 gl 97.2 0.00088 1.9E-08 57.5 6.5 72 7-93 17-93 (198)
97 cd01653 GATase1 Type 1 glutami 97.1 0.0017 3.7E-08 48.8 6.8 88 3-113 14-104 (115)
98 COG0118 HisH Glutamine amidotr 97.1 0.003 6.5E-08 53.2 8.0 86 160-270 1-89 (204)
99 PRK09065 glutamine amidotransf 97.1 0.0032 6.9E-08 55.6 8.7 96 160-272 1-104 (237)
100 PRK00784 cobyric acid synthase 97.0 0.0019 4E-08 63.3 7.7 86 161-271 252-340 (488)
101 PRK08007 para-aminobenzoate sy 97.0 0.0035 7.5E-08 53.3 7.7 87 165-272 2-88 (187)
102 TIGR00888 guaA_Nterm GMP synth 96.9 0.0032 7E-08 53.5 7.3 77 175-272 10-86 (188)
103 PRK06774 para-aminobenzoate sy 96.9 0.0033 7.1E-08 53.6 6.9 87 165-272 2-88 (191)
104 cd01748 GATase1_IGP_Synthase T 96.9 0.0018 3.8E-08 55.6 5.2 76 175-272 10-87 (198)
105 PRK07765 para-aminobenzoate sy 96.9 0.005 1.1E-07 53.5 8.1 78 177-271 14-91 (214)
106 PRK13170 hisH imidazole glycer 96.9 0.0048 1E-07 52.8 7.8 84 161-272 1-86 (196)
107 cd03146 GAT1_Peptidase_E Type 96.8 0.007 1.5E-07 52.5 8.7 95 160-271 31-129 (212)
108 PRK12564 carbamoyl phosphate s 96.8 0.0089 1.9E-07 55.9 9.7 87 160-271 177-263 (360)
109 TIGR00566 trpG_papA glutamine 96.8 0.0064 1.4E-07 51.7 7.9 87 165-272 2-88 (188)
110 cd03128 GAT_1 Type 1 glutamine 96.7 0.0061 1.3E-07 43.4 6.5 74 3-85 14-90 (92)
111 PRK07567 glutamine amidotransf 96.7 0.0095 2.1E-07 52.8 8.7 96 161-272 2-109 (242)
112 PRK05282 (alpha)-aspartyl dipe 96.7 0.0097 2.1E-07 52.2 8.3 94 160-271 31-128 (233)
113 TIGR01855 IMP_synth_hisH imida 96.6 0.0052 1.1E-07 52.6 6.5 75 175-272 10-87 (196)
114 cd03144 GATase1_ScBLP_like Typ 96.6 0.0069 1.5E-07 46.7 6.4 88 162-270 1-90 (114)
115 PRK05670 anthranilate synthase 96.6 0.011 2.3E-07 50.4 8.1 87 165-272 2-88 (189)
116 cd01745 GATase1_2 Subgroup of 96.6 0.0082 1.8E-07 51.1 7.1 79 178-271 23-115 (189)
117 COG0518 GuaA GMP synthase - Gl 96.6 0.02 4.3E-07 49.0 9.4 76 178-271 16-94 (198)
118 TIGR03800 PLP_synth_Pdx2 pyrid 96.6 0.0038 8.2E-08 52.9 4.9 72 6-91 14-86 (184)
119 PF00117 GATase: Glutamine ami 96.5 0.0056 1.2E-07 52.1 5.9 78 177-272 11-88 (192)
120 PRK08857 para-aminobenzoate sy 96.5 0.011 2.4E-07 50.4 7.3 87 165-272 2-88 (193)
121 PRK13181 hisH imidazole glycer 96.4 0.0046 1E-07 53.1 4.7 74 177-272 13-88 (199)
122 PRK13896 cobyrinic acid a,c-di 96.4 0.0091 2E-07 57.2 7.0 88 161-271 234-323 (433)
123 PRK13526 glutamine amidotransf 96.4 0.0044 9.5E-08 51.8 4.1 39 49-90 47-87 (179)
124 CHL00101 trpG anthranilate syn 96.3 0.015 3.3E-07 49.5 7.4 87 165-272 2-88 (190)
125 cd01743 GATase1_Anthranilate_S 96.3 0.016 3.5E-07 49.0 7.6 76 177-272 12-87 (184)
126 PRK05637 anthranilate synthase 96.2 0.019 4.2E-07 49.6 7.6 88 161-272 2-89 (208)
127 PRK05380 pyrG CTP synthetase; 96.2 0.043 9.4E-07 53.5 10.7 146 99-267 231-384 (533)
128 CHL00197 carA carbamoyl-phosph 96.2 0.035 7.6E-07 52.3 9.8 87 160-271 192-278 (382)
129 PRK00758 GMP synthase subunit 96.2 0.018 4E-07 48.6 7.2 68 179-272 15-83 (184)
130 PRK07649 para-aminobenzoate/an 96.2 0.017 3.6E-07 49.5 6.9 87 165-272 2-88 (195)
131 PRK13566 anthranilate synthase 96.2 0.035 7.6E-07 56.7 10.1 91 158-272 524-614 (720)
132 PRK13142 hisH imidazole glycer 96.2 0.026 5.7E-07 48.0 7.8 83 163-272 2-86 (192)
133 PLN02335 anthranilate synthase 96.1 0.029 6.4E-07 49.0 8.3 89 160-271 18-106 (222)
134 cd01742 GATase1_GMP_Synthase T 96.1 0.021 4.6E-07 48.0 7.2 75 177-272 12-86 (181)
135 TIGR00313 cobQ cobyric acid sy 96.1 0.017 3.7E-07 56.4 7.1 50 221-271 283-334 (475)
136 PRK14004 hisH imidazole glycer 96.0 0.014 3E-07 50.5 5.5 84 163-272 2-88 (210)
137 PRK06278 cobyrinic acid a,c-di 96.0 0.019 4.1E-07 55.8 6.8 46 221-272 35-81 (476)
138 TIGR01368 CPSaseIIsmall carbam 95.9 0.041 8.9E-07 51.5 8.4 85 161-271 174-258 (358)
139 PRK12838 carbamoyl phosphate s 95.8 0.056 1.2E-06 50.5 9.1 86 160-271 167-252 (354)
140 TIGR01815 TrpE-clade3 anthrani 95.7 0.064 1.4E-06 54.8 9.9 91 158-272 514-604 (717)
141 PF09825 BPL_N: Biotin-protein 95.7 0.066 1.4E-06 50.1 9.1 93 161-271 1-96 (367)
142 PRK01077 cobyrinic acid a,c-di 95.7 0.023 5.1E-07 55.1 6.4 70 8-92 265-339 (451)
143 COG0047 PurL Phosphoribosylfor 95.7 0.06 1.3E-06 46.3 7.9 82 7-96 20-102 (231)
144 PF13507 GATase_5: CobB/CobQ-l 95.6 0.023 5E-07 50.7 5.6 89 6-96 18-111 (259)
145 PLN02617 imidazole glycerol ph 95.6 0.021 4.6E-07 56.3 5.8 89 159-272 5-95 (538)
146 PRK13152 hisH imidazole glycer 95.6 0.029 6.3E-07 48.2 5.8 74 176-272 12-89 (201)
147 PRK13143 hisH imidazole glycer 95.4 0.021 4.6E-07 49.0 4.5 71 5-92 15-88 (200)
148 PRK13527 glutamine amidotransf 95.4 0.039 8.5E-07 47.3 6.2 69 8-91 21-93 (200)
149 PRK13525 glutamine amidotransf 95.4 0.032 7E-07 47.4 5.5 34 57-91 55-88 (189)
150 cd01750 GATase1_CobQ Type 1 gl 95.1 0.04 8.6E-07 47.1 5.1 72 8-93 17-90 (194)
151 TIGR00337 PyrG CTP synthase. C 94.5 0.35 7.5E-06 47.3 10.3 145 99-267 232-384 (525)
152 PLN02327 CTP synthase 94.5 0.27 5.8E-06 48.3 9.5 155 99-268 238-404 (557)
153 PRK08250 glutamine amidotransf 94.5 0.14 3E-06 45.2 7.0 30 61-91 71-100 (235)
154 PLN02771 carbamoyl-phosphate s 94.4 0.15 3.3E-06 48.4 7.5 76 176-272 251-326 (415)
155 COG0512 PabA Anthranilate/para 94.4 0.29 6.2E-06 41.2 8.2 85 165-270 4-88 (191)
156 PLN02347 GMP synthetase 94.1 0.2 4.2E-06 49.6 7.8 91 161-272 11-102 (536)
157 PF03575 Peptidase_S51: Peptid 93.7 0.085 1.8E-06 43.2 4.0 81 178-272 4-85 (154)
158 cd03129 GAT1_Peptidase_E_like 93.7 0.41 8.9E-06 41.3 8.4 100 160-272 29-130 (210)
159 PRK14607 bifunctional glutamin 93.5 0.19 4.1E-06 49.9 6.8 87 165-272 2-89 (534)
160 PRK13141 hisH imidazole glycer 93.5 0.075 1.6E-06 45.8 3.5 30 61-91 59-88 (205)
161 PRK09522 bifunctional glutamin 93.5 0.37 8.1E-06 47.7 8.6 90 165-272 4-93 (531)
162 cd01747 GATase1_Glutamyl_Hydro 93.4 0.37 7.9E-06 43.5 7.8 79 178-271 24-107 (273)
163 cd01749 GATase1_PB Glutamine A 93.3 0.15 3.3E-06 43.0 5.0 70 7-93 14-87 (183)
164 COG0505 CarA Carbamoylphosphat 93.1 0.33 7.1E-06 44.7 7.0 75 178-272 192-266 (368)
165 cd01746 GATase1_CTP_Synthase T 93.1 0.14 3E-06 45.2 4.5 44 221-268 54-97 (235)
166 PRK11366 puuD gamma-glutamyl-g 93.0 0.14 2.9E-06 45.8 4.4 51 221-272 60-123 (254)
167 PRK00074 guaA GMP synthase; Re 92.9 0.53 1.1E-05 46.5 8.7 88 160-271 3-90 (511)
168 PRK05368 homoserine O-succinyl 92.9 0.51 1.1E-05 43.1 7.9 109 159-269 34-149 (302)
169 COG3340 PepE Peptidase E [Amin 92.7 0.52 1.1E-05 40.3 7.1 93 160-266 32-129 (224)
170 cd01748 GATase1_IGP_Synthase T 92.6 0.17 3.7E-06 43.3 4.3 68 6-91 14-87 (198)
171 TIGR01857 FGAM-synthase phosph 92.0 0.52 1.1E-05 51.0 7.9 88 7-96 995-1095(1239)
172 TIGR02069 cyanophycinase cyano 92.0 0.87 1.9E-05 40.5 8.2 98 160-267 28-128 (250)
173 COG0504 PyrG CTP synthase (UTP 92.0 2.3 5E-05 41.0 11.2 184 60-267 149-384 (533)
174 PLN03206 phosphoribosylformylg 91.8 0.54 1.2E-05 51.2 7.7 90 7-98 1055-1149(1307)
175 cd01741 GATase1_1 Subgroup of 91.7 0.54 1.2E-05 39.7 6.4 30 61-91 68-97 (188)
176 PRK07053 glutamine amidotransf 91.7 0.83 1.8E-05 40.2 7.7 76 6-92 19-100 (234)
177 COG1797 CobB Cobyrinic acid a, 91.6 0.32 6.9E-06 46.1 5.1 71 7-91 264-339 (451)
178 PLN02832 glutamine amidotransf 91.6 0.35 7.5E-06 42.8 5.1 73 7-93 17-90 (248)
179 TIGR00379 cobB cobyrinic acid 91.4 0.48 1E-05 46.0 6.4 42 49-91 294-337 (449)
180 cd03145 GAT1_cyanophycinase Ty 91.3 1.3 2.8E-05 38.5 8.4 99 160-270 29-131 (217)
181 COG3442 Predicted glutamine am 91.1 0.69 1.5E-05 39.6 6.2 50 221-271 51-102 (250)
182 PRK06186 hypothetical protein; 91.1 0.31 6.7E-06 42.6 4.2 43 221-267 52-94 (229)
183 cd01744 GATase1_CPSase Small c 90.7 0.99 2.2E-05 37.8 6.9 70 7-91 13-85 (178)
184 TIGR01823 PabB-fungal aminodeo 90.5 1.4 3.1E-05 45.5 9.1 47 221-272 52-102 (742)
185 PHA03366 FGAM-synthase; Provis 90.4 0.8 1.7E-05 50.2 7.5 88 6-95 1045-1137(1304)
186 KOG3179 Predicted glutamine sy 90.3 2 4.3E-05 36.4 8.0 96 160-272 4-109 (245)
187 COG3155 ElbB Uncharacterized p 89.5 0.46 1E-05 38.5 3.6 41 49-90 93-143 (217)
188 PF13587 DJ-1_PfpI_N: N-termin 89.4 0.77 1.7E-05 27.9 3.8 19 169-187 20-38 (38)
189 COG2071 Predicted glutamine am 89.1 0.63 1.4E-05 40.6 4.4 46 221-267 59-119 (243)
190 PRK00784 cobyric acid synthase 88.2 0.82 1.8E-05 44.9 5.2 34 59-93 310-343 (488)
191 KOG0623 Glutamine amidotransfe 88.1 1.1 2.4E-05 40.8 5.5 74 175-269 13-88 (541)
192 PF07685 GATase_3: CobB/CobQ-l 87.8 0.6 1.3E-05 38.4 3.4 44 49-93 15-60 (158)
193 TIGR01739 tegu_FGAM_synt herpe 86.8 1.6 3.4E-05 47.6 6.8 88 6-95 946-1038(1202)
194 PLN02889 oxo-acid-lyase/anthra 86.3 2.8 6.2E-05 44.0 8.0 89 164-271 83-177 (918)
195 PRK05297 phosphoribosylformylg 86.2 1.9 4E-05 47.4 6.9 86 7-94 1053-1144(1290)
196 TIGR01735 FGAM_synt phosphorib 85.6 1.8 4E-05 47.5 6.5 88 7-96 1073-1166(1310)
197 COG1492 CobQ Cobyric acid synt 85.4 4.4 9.6E-05 39.3 8.2 131 106-271 199-340 (486)
198 TIGR01855 IMP_synth_hisH imida 85.2 1.2 2.6E-05 38.0 4.1 29 63-92 60-88 (196)
199 PRK06490 glutamine amidotransf 84.6 4.3 9.4E-05 35.8 7.4 75 6-91 24-102 (239)
200 CHL00188 hisH imidazole glycer 84.5 1.5 3.2E-05 38.0 4.3 73 5-92 16-91 (210)
201 COG4635 HemG Flavodoxin [Energ 84.2 7.4 0.00016 31.8 7.7 76 170-265 12-89 (175)
202 PRK06455 riboflavin synthase; 84.1 3.9 8.5E-05 33.2 6.2 92 160-260 1-96 (155)
203 PRK06895 putative anthranilate 84.0 3 6.5E-05 35.3 6.0 69 6-91 17-88 (190)
204 cd03131 GATase1_HTS Type 1 glu 83.7 0.65 1.4E-05 38.8 1.7 97 172-272 11-115 (175)
205 PF07722 Peptidase_C26: Peptid 83.3 1.5 3.2E-05 38.2 3.8 76 179-268 29-119 (217)
206 PRK02645 ppnK inorganic polyph 82.5 9.3 0.0002 35.1 8.9 93 160-271 3-98 (305)
207 PF01174 SNO: SNO glutamine am 81.7 1.7 3.6E-05 36.6 3.4 42 49-91 41-84 (188)
208 KOG0370 Multifunctional pyrimi 81.7 3.2 6.9E-05 43.2 5.9 71 179-272 186-256 (1435)
209 PRK13896 cobyrinic acid a,c-di 81.1 3.2 6.9E-05 40.1 5.5 33 57-91 292-324 (433)
210 COG0118 HisH Glutamine amidotr 80.3 3.1 6.7E-05 35.4 4.5 73 8-93 19-92 (204)
211 PLN02617 imidazole glycerol ph 80.3 3.5 7.5E-05 41.0 5.6 30 61-91 66-95 (538)
212 COG4285 Uncharacterized conser 80.1 15 0.00034 31.6 8.5 91 161-267 1-94 (253)
213 PRK03708 ppnK inorganic polyph 80.0 13 0.00029 33.5 8.9 88 161-265 1-90 (277)
214 TIGR00888 guaA_Nterm GMP synth 79.1 4.2 9E-05 34.3 5.1 69 7-91 15-86 (188)
215 PRK09271 flavodoxin; Provision 78.9 17 0.00037 29.7 8.6 91 161-264 1-94 (160)
216 PRK13181 hisH imidazole glycer 78.2 1.6 3.5E-05 37.3 2.3 29 62-91 60-88 (199)
217 PRK06703 flavodoxin; Provision 78.1 8.2 0.00018 31.1 6.4 89 160-265 1-92 (151)
218 PRK05665 amidotransferase; Pro 77.4 3 6.5E-05 36.8 3.8 31 61-92 78-108 (240)
219 PRK11104 hemG protoporphyrinog 77.2 15 0.00032 30.7 7.9 83 161-264 1-87 (177)
220 PRK05568 flavodoxin; Provision 77.2 24 0.00051 27.9 8.8 86 161-264 2-91 (142)
221 cd08195 DHQS Dehydroquinate sy 77.1 35 0.00075 31.9 11.1 138 161-310 25-163 (345)
222 KOG2387 CTP synthase (UTP-ammo 76.9 14 0.00029 35.4 8.0 101 159-267 297-404 (585)
223 PF09897 DUF2124: Uncharacteri 76.6 14 0.0003 29.7 6.9 108 159-275 18-129 (147)
224 TIGR00566 trpG_papA glutamine 76.1 6.6 0.00014 33.2 5.5 28 62-91 61-88 (188)
225 PRK03372 ppnK inorganic polyph 75.9 21 0.00046 32.8 9.0 101 159-270 4-111 (306)
226 PRK13170 hisH imidazole glycer 75.1 3.3 7.1E-05 35.3 3.4 26 63-92 62-87 (196)
227 PRK05569 flavodoxin; Provision 74.8 15 0.00033 29.0 7.1 87 161-265 2-93 (141)
228 COG0518 GuaA GMP synthase - Gl 74.7 5.4 0.00012 34.1 4.5 31 60-91 65-95 (198)
229 cd01743 GATase1_Anthranilate_S 73.7 12 0.00026 31.3 6.5 70 7-91 15-87 (184)
230 KOG1907 Phosphoribosylformylgl 72.8 39 0.00086 35.4 10.5 101 158-276 1056-1167(1320)
231 PRK13152 hisH imidazole glycer 72.8 11 0.00024 32.2 6.1 29 64-93 62-91 (201)
232 PRK06756 flavodoxin; Provision 72.4 17 0.00036 29.2 6.8 88 160-265 1-93 (148)
233 cd01745 GATase1_2 Subgroup of 72.2 4.3 9.4E-05 34.3 3.4 30 61-91 87-116 (189)
234 PRK12564 carbamoyl phosphate s 71.9 6 0.00013 37.2 4.5 31 60-91 234-264 (360)
235 PRK05670 anthranilate synthase 70.6 10 0.00022 32.0 5.3 73 7-91 16-88 (189)
236 PRK02649 ppnK inorganic polyph 70.4 37 0.00081 31.1 9.3 99 160-270 1-107 (305)
237 PRK06774 para-aminobenzoate sy 69.8 12 0.00027 31.5 5.7 69 6-91 15-88 (191)
238 PRK13146 hisH imidazole glycer 69.7 5.7 0.00012 34.2 3.7 29 64-93 67-95 (209)
239 cd01742 GATase1_GMP_Synthase T 69.6 15 0.00032 30.6 6.1 23 68-91 64-86 (181)
240 PRK01911 ppnK inorganic polyph 68.8 36 0.00079 31.0 8.8 100 161-271 1-104 (292)
241 PRK04539 ppnK inorganic polyph 68.4 50 0.0011 30.1 9.6 98 160-270 5-107 (296)
242 PRK09065 glutamine amidotransf 68.3 6.8 0.00015 34.5 3.9 30 61-91 75-104 (237)
243 COG0062 Uncharacterized conser 67.7 79 0.0017 27.1 10.1 108 160-275 49-170 (203)
244 PF00117 GATase: Glutamine ami 67.7 6.3 0.00014 33.1 3.5 73 7-92 14-89 (192)
245 PRK01231 ppnK inorganic polyph 67.3 40 0.00087 30.8 8.8 97 159-270 3-101 (295)
246 COG0311 PDX2 Predicted glutami 67.2 4.2 9E-05 34.1 2.1 42 49-91 46-88 (194)
247 TIGR01754 flav_RNR ribonucleot 67.0 37 0.0008 26.9 7.7 42 221-264 49-90 (140)
248 PRK11914 diacylglycerol kinase 65.8 25 0.00054 32.1 7.3 88 159-265 7-98 (306)
249 cd08197 DOIS 2-deoxy-scyllo-in 65.5 43 0.00093 31.4 8.9 133 161-309 24-161 (355)
250 PRK08857 para-aminobenzoate sy 65.4 19 0.00041 30.5 6.0 74 6-91 15-88 (193)
251 PRK07765 para-aminobenzoate sy 64.7 7.3 0.00016 33.7 3.3 71 7-91 17-92 (214)
252 PRK02155 ppnK NAD(+)/NADH kina 64.6 54 0.0012 29.9 9.0 96 160-270 5-102 (291)
253 cd03143 A4_beta-galactosidase_ 64.0 41 0.00088 27.1 7.5 64 172-262 24-87 (154)
254 PRK14077 pnk inorganic polypho 63.9 55 0.0012 29.8 8.9 94 159-270 9-103 (287)
255 PRK07308 flavodoxin; Validated 63.8 33 0.00071 27.4 6.9 86 162-264 3-91 (146)
256 PRK03378 ppnK inorganic polyph 62.7 68 0.0015 29.2 9.3 91 160-265 5-97 (292)
257 PF00885 DMRL_synthase: 6,7-di 61.8 20 0.00044 28.9 5.2 91 160-259 3-103 (144)
258 PF08532 Glyco_hydro_42M: Beta 61.8 28 0.00061 29.8 6.4 65 173-264 29-94 (207)
259 KOG1224 Para-aminobenzoate (PA 61.0 22 0.00048 34.8 5.9 100 161-281 13-117 (767)
260 cd03144 GATase1_ScBLP_like Typ 60.2 6 0.00013 30.5 1.7 22 64-85 67-88 (114)
261 PRK00758 GMP synthase subunit 59.9 16 0.00036 30.5 4.6 27 61-91 57-83 (184)
262 PRK13142 hisH imidazole glycer 59.2 16 0.00034 31.1 4.3 70 6-92 15-87 (192)
263 TIGR01357 aroB 3-dehydroquinat 59.1 1.2E+02 0.0026 28.2 10.6 137 161-309 21-158 (344)
264 TIGR01815 TrpE-clade3 anthrani 57.2 26 0.00056 36.3 6.2 30 61-91 575-604 (717)
265 PRK13055 putative lipid kinase 57.1 61 0.0013 30.1 8.3 67 160-235 2-72 (334)
266 PRK12361 hypothetical protein; 57.1 1.2E+02 0.0026 30.3 10.9 24 61-84 162-185 (547)
267 PRK14004 hisH imidazole glycer 56.7 14 0.0003 31.9 3.6 31 61-92 59-89 (210)
268 PRK00002 aroB 3-dehydroquinate 56.3 1.5E+02 0.0032 27.8 10.8 138 161-310 32-170 (358)
269 TIGR00313 cobQ cobyric acid sy 56.1 10 0.00023 37.1 3.1 32 59-91 304-335 (475)
270 COG1182 AcpD Acyl carrier prot 56.0 25 0.00054 30.0 4.9 64 53-124 96-165 (202)
271 PF09822 ABC_transp_aux: ABC-t 54.8 99 0.0021 27.6 9.0 79 160-263 146-234 (271)
272 PF01058 Oxidored_q6: NADH ubi 53.9 14 0.0003 29.3 2.9 40 221-265 44-83 (131)
273 PRK07567 glutamine amidotransf 53.3 18 0.00039 31.9 3.9 27 64-91 83-109 (242)
274 PRK13054 lipid kinase; Reviewe 52.9 94 0.002 28.2 8.7 66 159-235 2-69 (300)
275 cd03146 GAT1_Peptidase_E Type 52.8 14 0.00031 31.8 3.1 29 62-91 102-130 (212)
276 COG1058 CinA Predicted nucleot 52.4 54 0.0012 29.2 6.6 76 170-254 17-106 (255)
277 TIGR01001 metA homoserine O-su 51.9 32 0.0007 31.3 5.2 104 159-266 34-146 (300)
278 PRK03767 NAD(P)H:quinone oxido 51.7 37 0.00081 28.8 5.5 100 161-265 2-116 (200)
279 PF12682 Flavodoxin_4: Flavodo 51.4 7.1 0.00015 32.0 0.9 41 220-263 71-111 (156)
280 PF04204 HTS: Homoserine O-suc 51.2 19 0.00041 32.8 3.6 105 159-267 33-146 (298)
281 PRK00061 ribH 6,7-dimethyl-8-r 49.9 70 0.0015 26.1 6.5 92 159-259 11-112 (154)
282 PRK13566 anthranilate synthase 49.6 42 0.00091 34.8 6.3 30 61-91 585-614 (720)
283 CHL00197 carA carbamoyl-phosph 48.7 51 0.0011 31.3 6.3 30 61-91 250-279 (382)
284 COG0337 AroB 3-dehydroquinate 48.5 1.6E+02 0.0034 27.7 9.3 153 160-324 33-186 (360)
285 PLN02204 diacylglycerol kinase 48.1 40 0.00086 33.9 5.6 70 159-235 158-231 (601)
286 PF01799 Fer2_2: [2Fe-2S] bind 48.0 4.9 0.00011 28.5 -0.5 56 57-113 5-71 (75)
287 PRK07649 para-aminobenzoate/an 47.7 52 0.0011 27.9 5.7 69 6-91 15-88 (195)
288 PF03853 YjeF_N: YjeF-related 47.7 1.6E+02 0.0034 24.2 11.0 115 159-276 24-151 (169)
289 cd08199 EEVS 2-epi-5-epi-valio 46.6 1.5E+02 0.0033 27.8 9.1 138 160-309 26-165 (354)
290 TIGR00147 lipid kinase, YegS/R 46.6 1.3E+02 0.0029 27.0 8.7 65 160-234 1-69 (293)
291 PRK05282 (alpha)-aspartyl dipe 45.5 24 0.00053 31.0 3.4 34 59-93 98-131 (233)
292 PRK13337 putative lipid kinase 45.4 1.3E+02 0.0028 27.4 8.3 37 160-196 1-41 (304)
293 cd05014 SIS_Kpsf KpsF-like pro 45.0 1.4E+02 0.003 22.8 8.2 78 168-265 7-84 (128)
294 PRK11366 puuD gamma-glutamyl-g 44.6 25 0.00055 31.3 3.5 31 60-91 93-123 (254)
295 PRK14076 pnk inorganic polypho 43.8 1.4E+02 0.003 30.1 8.9 99 158-271 288-388 (569)
296 PLN02935 Bifunctional NADH kin 43.4 1.8E+02 0.0038 28.8 9.1 101 159-270 193-301 (508)
297 cd06318 PBP1_ABC_sugar_binding 43.1 60 0.0013 28.5 5.8 85 162-263 1-88 (282)
298 PLN02404 6,7-dimethyl-8-ribity 42.9 69 0.0015 25.7 5.3 92 159-259 6-107 (141)
299 TIGR01755 flav_wrbA NAD(P)H:qu 42.4 77 0.0017 26.9 6.0 99 162-265 2-115 (197)
300 COG4090 Uncharacterized protei 42.3 70 0.0015 25.2 5.0 102 160-274 26-133 (154)
301 cd06305 PBP1_methylthioribose_ 42.2 73 0.0016 27.8 6.1 34 162-195 1-37 (273)
302 PRK04885 ppnK inorganic polyph 42.0 1.2E+02 0.0026 27.2 7.3 40 222-270 35-76 (265)
303 PF06283 ThuA: Trehalose utili 41.6 1.2E+02 0.0025 26.0 7.1 40 221-264 51-90 (217)
304 PLN02834 3-dehydroquinate synt 41.1 2.1E+02 0.0045 27.8 9.3 140 161-312 101-243 (433)
305 PLN00118 isocitrate dehydrogen 41.0 43 0.00092 31.6 4.4 105 115-228 2-106 (372)
306 PRK00861 putative lipid kinase 40.2 1.6E+02 0.0034 26.7 8.1 86 160-265 2-91 (300)
307 COG1570 XseA Exonuclease VII, 39.5 79 0.0017 30.5 6.0 114 159-288 134-257 (440)
308 PF02558 ApbA: Ketopantoate re 39.5 47 0.001 26.4 4.1 81 179-265 13-104 (151)
309 PRK04761 ppnK inorganic polyph 39.3 46 0.001 29.5 4.2 38 219-265 22-59 (246)
310 PRK13059 putative lipid kinase 38.9 1.9E+02 0.0041 26.2 8.4 64 161-235 2-69 (295)
311 TIGR02336 1,3-beta-galactosyl- 38.8 77 0.0017 32.3 6.0 79 171-265 465-546 (719)
312 PF03698 UPF0180: Uncharacteri 38.7 73 0.0016 22.9 4.3 39 173-232 7-45 (80)
313 PRK06934 flavodoxin; Provision 38.5 29 0.00063 30.2 2.7 41 221-264 128-168 (221)
314 PF12724 Flavodoxin_5: Flavodo 38.2 44 0.00094 26.6 3.6 42 220-264 41-84 (143)
315 cd08169 DHQ-like Dehydroquinat 37.9 2.2E+02 0.0048 26.5 8.7 137 161-310 24-161 (344)
316 PLN02727 NAD kinase 37.9 1.6E+02 0.0034 31.5 8.1 101 159-270 677-782 (986)
317 PRK12419 riboflavin synthase s 37.8 1E+02 0.0022 25.3 5.6 91 160-259 10-110 (158)
318 PRK08007 para-aminobenzoate sy 37.8 26 0.00057 29.5 2.4 69 6-91 15-88 (187)
319 COG2247 LytB Putative cell wal 37.7 85 0.0019 28.9 5.6 92 163-270 30-144 (337)
320 PRK14817 NADH dehydrogenase su 37.7 51 0.0011 27.6 3.9 40 219-263 72-111 (181)
321 CHL00101 trpG anthranilate syn 37.6 32 0.0007 29.0 2.9 25 66-91 64-88 (190)
322 cd01481 vWA_collagen_alpha3-VI 37.6 85 0.0019 25.7 5.4 36 160-195 106-141 (165)
323 PF01975 SurE: Survival protei 37.4 81 0.0017 26.9 5.3 38 161-198 1-38 (196)
324 PRK06411 NADH dehydrogenase su 37.1 52 0.0011 27.7 3.9 39 220-263 72-110 (183)
325 TIGR01753 flav_short flavodoxi 37.1 1.8E+02 0.0038 22.5 7.0 71 177-265 17-90 (140)
326 COG0505 CarA Carbamoylphosphat 36.6 42 0.0009 31.3 3.5 31 60-91 236-266 (368)
327 PLN02958 diacylglycerol kinase 35.7 2E+02 0.0044 28.3 8.4 67 159-235 110-181 (481)
328 PLN02929 NADH kinase 35.3 1.8E+02 0.0039 26.6 7.4 65 173-265 33-97 (301)
329 TIGR00114 lumazine-synth 6,7-d 35.3 77 0.0017 25.4 4.5 90 161-259 1-100 (138)
330 PF02601 Exonuc_VII_L: Exonucl 35.2 99 0.0021 28.4 5.9 118 159-288 13-139 (319)
331 PF09508 Lact_bio_phlase: Lact 34.5 1.1E+02 0.0023 31.2 6.1 77 173-265 464-543 (716)
332 PRK13932 stationary phase surv 34.3 1.4E+02 0.003 26.7 6.4 39 159-198 4-42 (257)
333 PRK11303 DNA-binding transcrip 34.1 1.2E+02 0.0026 27.4 6.4 38 159-196 60-100 (328)
334 PF00781 DAGK_cat: Diacylglyce 33.8 1.3E+02 0.0028 23.2 5.7 85 162-265 1-92 (130)
335 PF13380 CoA_binding_2: CoA bi 33.8 2.2E+02 0.0047 21.8 9.3 79 161-255 1-79 (116)
336 cd01747 GATase1_Glutamyl_Hydro 33.7 1.2E+02 0.0025 27.4 6.0 28 62-90 78-107 (273)
337 PRK10355 xylF D-xylose transpo 33.4 1.5E+02 0.0032 27.3 6.8 87 159-262 24-113 (330)
338 COG0061 nadF NAD kinase [Coenz 33.4 3E+02 0.0065 24.8 8.6 36 221-265 54-89 (281)
339 COG2071 Predicted glutamine am 33.4 56 0.0012 28.7 3.7 31 58-89 91-121 (243)
340 TIGR01957 nuoB_fam NADH-quinon 33.4 65 0.0014 26.0 3.8 39 220-263 55-93 (145)
341 PRK03673 hypothetical protein; 33.2 2.1E+02 0.0045 27.4 7.8 74 172-254 19-106 (396)
342 cd06310 PBP1_ABC_sugar_binding 32.8 1.2E+02 0.0025 26.5 5.9 85 162-262 1-89 (273)
343 PRK05637 anthranilate synthase 32.7 41 0.0009 28.9 2.8 70 6-91 17-89 (208)
344 COG3442 Predicted glutamine am 32.6 33 0.00071 29.7 2.0 28 61-89 74-101 (250)
345 cd02774 MopB_Res-Cmplx1_Nad11- 32.5 2.6E+02 0.0057 26.3 8.4 96 161-263 88-186 (366)
346 PRK14075 pnk inorganic polypho 32.4 3.4E+02 0.0074 24.1 8.7 77 161-270 1-77 (256)
347 TIGR01368 CPSaseIIsmall carbam 32.3 41 0.00088 31.7 2.9 30 60-91 230-259 (358)
348 PRK14820 NADH dehydrogenase su 32.2 71 0.0015 26.8 3.9 39 220-263 71-109 (180)
349 cd01538 PBP1_ABC_xylose_bindin 31.8 1.2E+02 0.0026 26.9 5.9 83 163-262 2-87 (288)
350 PRK03501 ppnK inorganic polyph 31.8 2.8E+02 0.0061 24.8 8.0 70 161-265 3-75 (264)
351 PF02310 B12-binding: B12 bind 31.3 82 0.0018 23.8 4.1 56 163-230 3-59 (121)
352 PRK09267 flavodoxin FldA; Vali 31.3 1.4E+02 0.0031 24.3 5.8 42 221-264 45-89 (169)
353 cd01746 GATase1_CTP_Synthase T 31.2 66 0.0014 28.2 3.9 29 60-89 70-98 (235)
354 KOG4435 Predicted lipid kinase 31.1 40 0.00086 31.9 2.5 65 159-234 59-128 (535)
355 PF12646 DUF3783: Domain of un 30.9 91 0.002 20.7 3.6 28 165-192 3-30 (58)
356 PRK13903 murB UDP-N-acetylenol 30.7 76 0.0017 29.9 4.4 91 30-121 9-114 (363)
357 TIGR03294 FrhG coenzyme F420 h 30.3 79 0.0017 27.6 4.2 38 221-263 49-86 (228)
358 cd08198 DHQS-like2 Dehydroquin 30.1 3.2E+02 0.007 25.8 8.5 141 160-311 30-178 (369)
359 PRK08105 flavodoxin; Provision 29.9 2.6E+02 0.0056 22.4 6.9 35 161-195 2-38 (149)
360 COG1105 FruK Fructose-1-phosph 29.8 3.3E+02 0.0072 25.1 8.2 44 221-267 128-171 (310)
361 cd01482 vWA_collagen_alphaI-XI 29.7 1.4E+02 0.0031 24.0 5.5 37 160-196 103-139 (164)
362 COG1597 LCB5 Sphingosine kinas 29.6 3.5E+02 0.0076 24.7 8.5 38 160-197 2-43 (301)
363 COG0812 MurB UDP-N-acetylmuram 29.5 51 0.0011 30.0 2.9 84 37-121 4-103 (291)
364 cd02071 MM_CoA_mut_B12_BD meth 29.3 2.1E+02 0.0045 22.0 6.1 70 168-251 8-77 (122)
365 PRK06249 2-dehydropantoate 2-r 29.2 3.7E+02 0.0079 24.5 8.7 93 159-264 4-108 (313)
366 KOG0026 Anthranilate synthase, 29.0 2.8E+02 0.0061 22.9 6.7 103 165-286 21-132 (223)
367 PRK09004 FMN-binding protein M 29.0 2.6E+02 0.0057 22.3 6.8 33 161-193 2-36 (146)
368 COG0054 RibH Riboflavin syntha 28.8 2.3E+02 0.0051 23.0 6.2 93 159-260 11-113 (152)
369 PRK09522 bifunctional glutamin 28.6 1.2E+02 0.0025 30.4 5.5 20 71-91 74-93 (531)
370 PRK03094 hypothetical protein; 28.5 1.4E+02 0.0031 21.4 4.4 21 173-193 7-27 (80)
371 PRK00561 ppnK inorganic polyph 28.1 82 0.0018 28.2 3.9 41 221-270 32-72 (259)
372 PF09825 BPL_N: Biotin-protein 28.1 65 0.0014 30.4 3.4 30 60-91 68-97 (367)
373 PRK14021 bifunctional shikimat 27.4 3.7E+02 0.008 26.9 8.8 136 161-309 210-346 (542)
374 PRK01372 ddl D-alanine--D-alan 27.3 1.4E+02 0.0031 26.8 5.6 39 159-197 3-46 (304)
375 PRK11041 DNA-binding transcrip 27.3 95 0.0021 27.8 4.4 61 126-195 10-73 (309)
376 PRK06242 flavodoxin; Provision 27.2 98 0.0021 24.5 4.0 42 221-265 42-84 (150)
377 PF09558 DUF2375: Protein of u 27.2 48 0.001 22.7 1.7 20 66-85 38-57 (71)
378 cd01475 vWA_Matrilin VWA_Matri 27.1 1.4E+02 0.003 25.7 5.2 36 160-195 108-143 (224)
379 cd01473 vWA_CTRP CTRP for CS 27.0 1.3E+02 0.0028 25.3 4.9 38 160-197 108-149 (192)
380 PRK11921 metallo-beta-lactamas 26.9 1.3E+02 0.0029 28.5 5.5 93 160-265 247-343 (394)
381 COG0716 FldA Flavodoxins [Ener 26.8 3E+02 0.0065 21.9 6.8 86 160-264 1-91 (151)
382 KOG3179 Predicted glutamine sy 26.0 85 0.0018 26.9 3.4 30 61-91 80-109 (245)
383 PRK12838 carbamoyl phosphate s 25.8 61 0.0013 30.5 2.8 30 60-91 224-253 (354)
384 COG1182 AcpD Acyl carrier prot 25.8 2.9E+02 0.0062 23.7 6.5 52 222-282 87-138 (202)
385 cd06319 PBP1_ABC_sugar_binding 25.7 1.9E+02 0.0041 25.1 6.0 61 162-231 1-64 (277)
386 TIGR02990 ectoine_eutA ectoine 25.7 3.7E+02 0.008 23.7 7.6 94 159-265 119-216 (239)
387 cd06312 PBP1_ABC_sugar_binding 25.1 2.1E+02 0.0046 24.9 6.2 85 162-263 1-90 (271)
388 PRK03670 competence damage-ind 25.1 2.1E+02 0.0046 25.4 6.0 75 172-254 18-106 (252)
389 cd02070 corrinoid_protein_B12- 24.8 2.5E+02 0.0054 23.8 6.3 89 160-262 82-171 (201)
390 PF11760 CbiG_N: Cobalamin syn 24.8 1.7E+02 0.0037 21.2 4.4 62 64-125 2-76 (84)
391 PF03358 FMN_red: NADPH-depend 24.8 36 0.00078 27.2 1.0 99 161-264 1-115 (152)
392 TIGR02417 fruct_sucro_rep D-fr 24.8 2.7E+02 0.0058 25.1 7.0 38 159-196 59-99 (327)
393 PRK13934 stationary phase surv 24.7 2.5E+02 0.0055 25.2 6.4 37 161-198 1-37 (266)
394 PRK10014 DNA-binding transcrip 24.6 2.7E+02 0.0059 25.2 7.0 37 159-195 63-102 (342)
395 PLN02771 carbamoyl-phosphate s 24.5 91 0.002 30.0 3.7 30 60-91 297-326 (415)
396 COG4126 Hydantoin racemase [Am 24.5 4.8E+02 0.01 22.8 8.3 47 221-282 68-114 (230)
397 cd01472 vWA_collagen von Wille 24.4 2.1E+02 0.0045 23.0 5.6 38 159-196 102-139 (164)
398 PF03575 Peptidase_S51: Peptid 24.4 53 0.0011 26.6 1.9 79 6-93 5-87 (154)
399 COG1941 FrhG Coenzyme F420-red 24.4 1.4E+02 0.0029 26.4 4.4 79 161-264 4-86 (247)
400 PRK14814 NADH dehydrogenase su 24.2 1.2E+02 0.0026 25.6 4.0 39 220-263 71-109 (186)
401 KOG0623 Glutamine amidotransfe 24.1 1.3E+02 0.0028 28.0 4.4 33 58-91 58-90 (541)
402 PRK05452 anaerobic nitric oxid 23.7 1.9E+02 0.0041 28.4 5.9 95 159-266 250-348 (479)
403 TIGR02370 pyl_corrinoid methyl 23.6 3.3E+02 0.0072 23.0 6.8 77 161-254 85-162 (197)
404 PLN02522 ATP citrate (pro-S)-l 23.6 4.2E+02 0.009 27.0 8.3 146 159-329 166-320 (608)
405 TIGR01481 ccpA catabolite cont 23.4 2.9E+02 0.0063 24.9 7.0 38 159-196 58-98 (329)
406 PRK10423 transcriptional repre 23.1 3.4E+02 0.0074 24.3 7.3 38 159-196 55-95 (327)
407 COG1609 PurR Transcriptional r 22.9 2.6E+02 0.0056 25.8 6.5 61 128-197 35-98 (333)
408 PF12641 Flavodoxin_3: Flavodo 22.8 95 0.0021 25.5 3.1 39 221-264 38-76 (160)
409 TIGR02922 conserved hypothetic 22.7 65 0.0014 21.7 1.7 18 67-84 37-54 (67)
410 PRK06278 cobyrinic acid a,c-di 22.6 74 0.0016 31.2 2.8 27 61-91 55-81 (476)
411 cd06315 PBP1_ABC_sugar_binding 22.4 3E+02 0.0065 24.2 6.6 62 161-231 1-65 (280)
412 PRK14815 NADH dehydrogenase su 22.1 1.5E+02 0.0032 25.0 4.1 39 220-263 71-109 (183)
413 PF02525 Flavodoxin_2: Flavodo 21.6 4.7E+02 0.01 21.8 7.4 112 161-282 1-131 (199)
414 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.6 1.8E+02 0.0038 22.1 4.4 38 221-264 45-82 (126)
415 PRK01185 ppnK inorganic polyph 21.5 5.8E+02 0.012 22.9 8.1 82 161-266 1-84 (271)
416 cd02067 B12-binding B12 bindin 21.3 2.9E+02 0.0063 20.8 5.5 70 168-251 8-77 (119)
417 PF11823 DUF3343: Protein of u 21.1 2.9E+02 0.0062 19.0 5.4 45 164-212 4-48 (73)
418 PRK10703 DNA-binding transcrip 20.5 3.6E+02 0.0077 24.5 6.9 38 159-196 58-98 (341)
419 cd01477 vWA_F09G8-8_type VWA F 20.4 2.5E+02 0.0055 23.7 5.4 38 160-197 131-171 (193)
420 PF02441 Flavoprotein: Flavopr 20.4 2.5E+02 0.0054 21.8 5.0 104 161-264 1-120 (129)
421 PRK14816 NADH dehydrogenase su 20.3 1.7E+02 0.0037 24.6 4.1 39 220-263 79-117 (182)
422 cd03129 GAT1_Peptidase_E_like 20.2 1.1E+02 0.0024 26.0 3.2 28 63-91 103-130 (210)
No 1
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=2e-34 Score=244.59 Aligned_cols=175 Identities=49% Similarity=0.759 Sum_probs=159.5
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEE--EEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVV--ASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~--~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
||+|+++|||++.|+..+.+.|+.+|+++++ +|++++.++++++|+.+.++..+++...++||+|+||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6899999999999999999999999977765 89887448999999999999999986668899999999964445556
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCc-CCCcEEEeCCeEeCCCcccHHHH
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSE-IENRVVVDGNLVTSRGPGTSMEF 318 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~-~~~~~v~dg~liT~~g~~~~~~~ 318 (344)
+++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.+++..+ .++.+++||+++||+|+.++++|
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~ 159 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF 159 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence 88999999999999999999999997 55999999999999999999999988666 58899999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHH
Q 019238 319 ALAIVEKFFGRNKALELAK 337 (344)
Q Consensus 319 ~~~li~~l~g~~~a~~~a~ 337 (344)
++++|+++.|++.++++++
T Consensus 160 ~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 160 ALALVELLCGKEKAQEVAA 178 (179)
T ss_pred HHHHHHHhcCHHHHHHhhc
Confidence 9999999999999999985
No 2
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=100.00 E-value=6.8e-33 Score=238.42 Aligned_cols=185 Identities=45% Similarity=0.648 Sum_probs=167.1
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCC--CceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
++|||+|+++|||.+.|+..+.++|+++|+++++++.++ +.++.++.|+.+.++..+++...++||+|+||||.....
T Consensus 1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 358999999999999999999999999999999999864 237899999999999999887666899999999965455
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeC--CeEeCCCccc
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDG--NLVTSRGPGT 314 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg--~liT~~g~~~ 314 (344)
.+.+++.+++||+++++++++|+++|+|++++|+.+|+|+|+++|.++...+.+.+..+.++.+++|+ |+|||+|+.+
T Consensus 81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a 160 (196)
T PRK11574 81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGT 160 (196)
T ss_pred hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcch
Confidence 56788899999999999999999999998666788999999999999999998888777777888886 9999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238 315 SMEFALAIVEKFFGRNKALELAKILLFTR 343 (344)
Q Consensus 315 ~~~~~~~li~~l~g~~~a~~~a~~l~~~~ 343 (344)
++||++++|++++|++.|+++++.|+++.
T Consensus 161 ~~dlal~li~~~~G~~~a~~va~~~~~~~ 189 (196)
T PRK11574 161 AIDFALKIIDLLVGREKAHEVASQLVMAA 189 (196)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence 99999999999999999999999998764
No 3
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=2.9e-33 Score=238.58 Aligned_cols=174 Identities=21% Similarity=0.318 Sum_probs=159.4
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
|+|+++|||.+.|+..+.|+|+.++ ++++++|.+++ ++.+++|+.+.+|..+++. ++||+|+||||...
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~~- 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLGA- 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCCc-
Confidence 6899999999999999999999876 89999999986 9999999999999988765 78999999999643
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCcCCCcEEEeCCeEeCCC
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSEIENRVVVDGNLVTSRG 311 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~~~~~~v~dg~liT~~g 311 (344)
. +..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++ ..+.++.++.|||+||++|
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g 154 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG 154 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence 2 6789999999999999999999999997 55999999999999999999988865 3457888999999999999
Q ss_pred cccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 312 PGTSMEFALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 312 ~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
+.+++++++++|++++|++.|+++++.|+++
T Consensus 155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 155 GTAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 9999999999999999999999999999875
No 4
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2.3e-33 Score=238.88 Aligned_cols=175 Identities=24% Similarity=0.441 Sum_probs=161.6
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcC-----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+|+++|||++.|+..+.++|+.+| ++++++|++++ ++.+++|..+.+|.++++. .+||+|+||||.. ...
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~~-~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGGG-TRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCcc-hhh
Confidence 6899999999999999999999999 99999999996 9999999999999999876 6899999999953 455
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC--Cc-CCCcEEEeCCeEeCCCccc
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ--SE-IENRVVVDGNLVTSRGPGT 314 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~--~~-~~~~~v~dg~liT~~g~~~ 314 (344)
+..++.+++||+++++++|+|+++|+|+. +|+++|+|+|+++|+||...+.+++. .+ .++.+++|||++||+|+.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~-~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a 155 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTGAL-LLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA 155 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchHHH-HHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence 67899999999999999999999999975 59999999999999999999988763 33 7889999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 315 SMEFALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 315 ~~~~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
+.+|++++|++++|++.++++++.|+++
T Consensus 156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 156 GIDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999999999864
No 5
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=3.8e-33 Score=238.32 Aligned_cols=175 Identities=23% Similarity=0.338 Sum_probs=158.4
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
|+|+++|||.+.|+..+.|+|+.++ ++++++|.+++ ++++++|+++.+|..+++. ++||+|+||||.. .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence 5899999999999999999999987 99999999986 9999999999999988855 7899999999954 3
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC----Cc-CCCcEEEeCCeEeCC
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ----SE-IENRVVVDGNLVTSR 310 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~----~~-~~~~~v~dg~liT~~ 310 (344)
.....++.+++||+++++++++|+++|+|++ +|+++|+|+|+++|+||...+.+++. .+ .+..+++||+++||+
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~ 155 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTGAF-VLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA 155 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHHHH-HHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence 3467899999999999999999999999975 59999999999999999999888762 23 456789999999999
Q ss_pred CcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 311 GPGTSMEFALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 311 g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
|+.+++++++++|++++|++.++++++.|.++
T Consensus 156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~ 187 (187)
T cd03137 156 GVTAGIDLCLHLVREDLGAAVANRVARRLVVP 187 (187)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999998763
No 6
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=9e-33 Score=237.57 Aligned_cols=176 Identities=24% Similarity=0.396 Sum_probs=158.5
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhc------------CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRA------------KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~------------~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG 230 (344)
|+|+++|||...++..++|+|+.+ +|+++++|.+++ ++.+++|+.+.+|..+++. ++||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence 689999999999999999999974 389999999986 9999999999999988876 7899999999
Q ss_pred CccchH--hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC----C-cCCCcEEEe
Q 019238 231 GLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ----S-EIENRVVVD 303 (344)
Q Consensus 231 G~~~~~--~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~----~-~~~~~~v~d 303 (344)
|..... .+..++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.|++. . ..++.+++|
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d 156 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVF-LLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD 156 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence 865444 467899999999999999999999999975 59999999999999999998888662 2 335889999
Q ss_pred CCeEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 304 GNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 304 g~liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
||+|||+|+.+++++++++|++++|++.|+++++.|.++
T Consensus 157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999864
No 7
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=100.00 E-value=2.2e-32 Score=228.37 Aligned_cols=162 Identities=48% Similarity=0.749 Sum_probs=148.8
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceee-eccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~ 241 (344)
|+|+++|||++.|+..+.++|+.+|++++++|++++ ++. ++.|+.+.++..+++..+.+||+|+||||......+.++
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999997 765 579999999999998877899999999996345566789
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCcccHHHHHHH
Q 019238 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEFALA 321 (344)
Q Consensus 242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~~~~~~~~~~ 321 (344)
+.+++||+++++++++|+++|+|+. +|+++|+|+||++|+||...+.+.+..+.++.+|+|||+|||+|+.++++++++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~ 158 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPA-VLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK 158 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHH-HHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence 9999999999999999999999975 599999999999999999999998777777899999999999999999999999
Q ss_pred HHHHh
Q 019238 322 IVEKF 326 (344)
Q Consensus 322 li~~l 326 (344)
+|+++
T Consensus 159 li~~l 163 (163)
T cd03135 159 IVEAL 163 (163)
T ss_pred HHHhC
Confidence 99975
No 8
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=4.3e-31 Score=221.31 Aligned_cols=162 Identities=31% Similarity=0.495 Sum_probs=147.8
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~ 241 (344)
||+|+++|||++.|+..+.+.|+.+|++++++|.+++ ++.++.|..+.++.++++..+.+||+|+||||.. ...+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence 6899999999999999999999999999999999886 9999999999999999888666899999999954 4555678
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCC-CcEEEeCCeEeCCCcccHHHH
Q 019238 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIE-NRVVVDGNLVTSRGPGTSMEF 318 (344)
Q Consensus 242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~-~~~v~dg~liT~~g~~~~~~~ 318 (344)
+.+.+||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.+++ ..+.+ +.+|+|||+|||+|+.++.+|
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f 157 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQ-LLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF 157 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHH-HHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence 8999999999999999999999975 5999999999999999999998876 34555 799999999999999999999
Q ss_pred HHHHHHHh
Q 019238 319 ALAIVEKF 326 (344)
Q Consensus 319 ~~~li~~l 326 (344)
+.++++.+
T Consensus 158 a~~~~~~l 165 (166)
T TIGR01382 158 NREFLKLL 165 (166)
T ss_pred HHHHHHHh
Confidence 99999975
No 9
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=5.3e-31 Score=220.52 Aligned_cols=160 Identities=33% Similarity=0.537 Sum_probs=146.7
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeC-CCceeeeccce-eeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVA-DKLEILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~-~~~~v~~~~g~-~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
||+|+++|||++.|+..+.+.|++++++++++|++ ++ +++++.|. .+.++..+++..+.+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 68999999999999999999999999999999999 65 99999999 9999999998766689999999996 345566
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME 317 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~ 317 (344)
.++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||...+.+++ ..+.++.+++|||+|||+|+.++++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~ 157 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPW-VLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA 157 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHH-HHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence 789999999999999999999999975 5999999999999999999998876 4566788999999999999999999
Q ss_pred HHHHHHH
Q 019238 318 FALAIVE 324 (344)
Q Consensus 318 ~~~~li~ 324 (344)
|+..+++
T Consensus 158 f~~~~~~ 164 (165)
T cd03134 158 FNRAILK 164 (165)
T ss_pred HHHHHHh
Confidence 9999986
No 10
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.97 E-value=8.8e-31 Score=235.98 Aligned_cols=180 Identities=21% Similarity=0.335 Sum_probs=163.2
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
++.+|+++++|+|.+..+..+++.|+.+| +.+.+++.+++ +|.+++|+.|.+|..++.. +++|+++++||
T Consensus 9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g 85 (328)
T COG4977 9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCGG 85 (328)
T ss_pred CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEecC
Confidence 46799999999999999999999999987 56889999997 9999999999999999998 56999999888
Q ss_pred ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CCcCCCcEEEeCCeE
Q 019238 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QSEIENRVVVDGNLV 307 (344)
Q Consensus 232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~~~~~~~v~dg~li 307 (344)
.. .......+++.+||++.+++|..|+++|+|+ |+||++|||+||++|+||.+.+.|++ ....+..+++||++|
T Consensus 86 ~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictGa-f~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~ 163 (328)
T COG4977 86 LG-PERPVNAPALLAWLRRAARRGARLGGLCTGA-FVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRI 163 (328)
T ss_pred CC-cccccchHHHHHHHHHHHhcCCeEEEehHhH-HHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEE
Confidence 54 3333344889999999999999999999996 66999999999999999999888876 346788999999999
Q ss_pred eCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 019238 308 TSRGPGTSMEFALAIVEKFFGRNKALELAKILLFTR 343 (344)
Q Consensus 308 T~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~~ 343 (344)
||+|..+++|+|++||++.+|.++|+++++.|++++
T Consensus 164 T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~ 199 (328)
T COG4977 164 TCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDP 199 (328)
T ss_pred EcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999875
No 11
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.97 E-value=2.8e-30 Score=238.91 Aligned_cols=182 Identities=23% Similarity=0.321 Sum_probs=160.8
Q ss_pred eecCCCCeEEEEeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEE
Q 019238 155 WTFDNSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIV 227 (344)
Q Consensus 155 ~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~li 227 (344)
++..++++|+|+++|||...|++.+.|+|+.++ |+++++|.+++ +|.+++|+.+.+|..+++. ++||+|+
T Consensus 4 ~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~li 80 (322)
T PRK09393 4 MMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIV 80 (322)
T ss_pred cccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEE
Confidence 344566899999999999999999999997654 68999999986 9999999999999999876 7899999
Q ss_pred EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc----CC-cCCCcEEE
Q 019238 228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN----QS-EIENRVVV 302 (344)
Q Consensus 228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~----~~-~~~~~~v~ 302 (344)
||||.. ... ..++.+++||+++++++++|+++|+|+. +||++|+|+|+++|+||...+.|++ .. ..+..+++
T Consensus 81 vpGg~~-~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~ 157 (322)
T PRK09393 81 IPGWRG-PDA-PVPEPLLEALRAAHARGARLCSICSGVF-VLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVD 157 (322)
T ss_pred ECCCCc-ccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHH-HHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEe
Confidence 999853 222 4689999999999999999999999975 5999999999999999999988865 22 23456889
Q ss_pred eCCeEeCCCcccHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 303 DGNLVTSRGPGTSMEFALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 303 dg~liT~~g~~~~~~~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
|||++||+|+.++++++++++++.+|.+.++.+++.|+++
T Consensus 158 ~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~ 197 (322)
T PRK09393 158 EGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVP 197 (322)
T ss_pred cCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999999999998874
No 12
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.97 E-value=1.4e-30 Score=217.26 Aligned_cols=183 Identities=43% Similarity=0.663 Sum_probs=171.2
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
++.+.|+..+|.+++|+..++++|++.|++++++++.++.++.++.|..+.+|..+.+.....||+++||||..+...+.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 57888899999999999999999999999999999998889999999999999888887678999999999966678899
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeCCeEeCCCcccHHH
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDGNLVTSRGPGTSME 317 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg~liT~~g~~~~~~ 317 (344)
..+.+.+.+++|.+.+++|++||+|+.++|+..|++.|+++|+||..++++.. .++.+..+|.||||+|++|+..+.+
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e 164 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE 164 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence 99999999999999999999999999787888899999999999999999988 6788999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhccc
Q 019238 318 FALAIVEKFFGRNKALELAKILLFT 342 (344)
Q Consensus 318 ~~~~li~~l~g~~~a~~~a~~l~~~ 342 (344)
|++.|+|++.|++.++.+.+.|.+.
T Consensus 165 Fal~lvEqL~GKeka~~v~~~l~l~ 189 (247)
T KOG2764|consen 165 FALKLVEQLGGKEKANEVKKPLSLL 189 (247)
T ss_pred HHHHHHHHhcCchhhhhhhccceee
Confidence 9999999999999999999887753
No 13
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.97 E-value=8.1e-30 Score=213.54 Aligned_cols=154 Identities=30% Similarity=0.494 Sum_probs=135.2
Q ss_pred EeCCCcchhHHHHHHHHHHhcC-------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 166 PIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
|++|||.+.|++.+.|+|+.++ +++++++.+++ ++.+++|+.+.++..+++. .++|+|+||||.. ....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence 6899999999999999999998 99999999996 9999999999999999996 8999999999965 4556
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccC-----CcCCCcEEEeCCeEeCCCcc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQ-----SEIENRVVVDGNLVTSRGPG 313 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~-----~~~~~~~v~dg~liT~~g~~ 313 (344)
..++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.|++. +..++.+|.|||++||+|..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~ 155 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTGA-LLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT 155 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTHH-HHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred ccCHHHHHHhhhhhccceEEeeeehHH-HHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence 788999999999999999999999996 559999999999999999999999873 23489999999999999999
Q ss_pred cHHHHHHHHHH
Q 019238 314 TSMEFALAIVE 324 (344)
Q Consensus 314 ~~~~~~~~li~ 324 (344)
+++|++++||+
T Consensus 156 ~~~dl~l~li~ 166 (166)
T PF13278_consen 156 AAIDLALYLIE 166 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 14
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=2.1e-29 Score=213.78 Aligned_cols=163 Identities=26% Similarity=0.453 Sum_probs=143.7
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc--eeee-------------ccceeeeeccccccccCCCccEE
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILA-------------SCQVKLVADMLIDEAAKLSYDLI 226 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~--~v~~-------------~~g~~v~~~~~~~~~~~~~~D~l 226 (344)
||+|+++|||++.|+..+++.|+++|++++++|++++. ++.+ ..|..+.++.++++..+.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 68999999999999999999999999999999998862 2333 25889999999998866789999
Q ss_pred EEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcCCCcEEEeC
Q 019238 227 VLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN--QSEIENRVVVDG 304 (344)
Q Consensus 227 iipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~v~dg 304 (344)
+||||.. ...+..++.+.+||+++++++|+|+++|+|+. +|+++|+|+|+++|+||...+.+++ ..+.++.+++||
T Consensus 81 iv~GG~~-~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~ 158 (180)
T cd03169 81 VIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG 158 (180)
T ss_pred EEcCCCC-hhhhccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence 9999963 44455788999999999999999999999975 5999999999999999999988876 346678899999
Q ss_pred CeEeCCCcccHHHHHHHHHHHh
Q 019238 305 NLVTSRGPGTSMEFALAIVEKF 326 (344)
Q Consensus 305 ~liT~~g~~~~~~~~~~li~~l 326 (344)
|+|||+|+.++.+|+.++++.+
T Consensus 159 ~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 159 NLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred CEEEecCCchHHHHHHHHHHhC
Confidence 9999999999999999999864
No 15
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=3.3e-29 Score=210.52 Aligned_cols=160 Identities=24% Similarity=0.391 Sum_probs=140.6
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcC
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~ 241 (344)
|+|+++|||++.|+..+++.|++. ++++++++++++ ++.+++|+.+.++.++++..+.+||+|+||||.. .. ...+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence 579999999999999999999997 799999999997 9999999999999999987656899999999953 22 2478
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcC-chhhhcc-----CCcCCCcEEEeCCeEeCCCcccH
Q 019238 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA-MCNKLSN-----QSEIENRVVVDGNLVTSRGPGTS 315 (344)
Q Consensus 242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~-~~~~~~~-----~~~~~~~~v~dg~liT~~g~~~~ 315 (344)
+.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||. ..+.++. ..+.++.+++|||+|||+|.. +
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~ 155 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATL-ALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-P 155 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHH-HHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-H
Confidence 8999999999999999999999975 599999999999999985 4555643 356789999999999998755 8
Q ss_pred HHHHHHHHHHhc
Q 019238 316 MEFALAIVEKFF 327 (344)
Q Consensus 316 ~~~~~~li~~l~ 327 (344)
++|++++|+++.
T Consensus 156 ~d~al~~i~~l~ 167 (170)
T cd03140 156 VEFAAEILRALD 167 (170)
T ss_pred HHHHHHHHHHcC
Confidence 999999999863
No 16
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.95 E-value=5e-28 Score=201.95 Aligned_cols=196 Identities=43% Similarity=0.583 Sum_probs=164.1
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhh
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQAS 72 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~ 72 (344)
+|++.|.++|+|.|++|+++|++++.+|+++.|..+.+|..+.|..+ | ||.++...|.+++.+.+.+++|.+
T Consensus 19 ~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~ 98 (247)
T KOG2764|consen 19 YEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAE 98 (247)
T ss_pred eEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHh
Confidence 58999999999999999999999988999999999999998877642 2 887899999999999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhH
Q 019238 73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK 127 (344)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~ 127 (344)
.|++|++||+||.++|+..|++.|++ |||+|||+||.++++|++.|+|++.|+..
T Consensus 99 ~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKek 178 (247)
T KOG2764|consen 99 SGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEK 178 (247)
T ss_pred cCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchh
Confidence 99999999999954667777776777 99999999999999999999999999999
Q ss_pred HHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccce
Q 019238 128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207 (344)
Q Consensus 128 a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~ 207 (344)
++++.+.+.+.+.. +.|+-...|.-...+.+.+ +.++.+-+. |.
T Consensus 179 a~~v~~~l~l~~~~-------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~~----------g~ 222 (247)
T KOG2764|consen 179 ANEVKKPLSLLFLP-------------------------VAPEKKAGEACATADHDLE-GRQVPVEKV----------GH 222 (247)
T ss_pred hhhhhccceeeccc-------------------------cCCCchhcceecceehhhh-cCcceeecc----------cc
Confidence 99999999765532 5566666777777777777 555433222 23
Q ss_pred eeeeccccccccCCCccEEEEcCCc
Q 019238 208 KLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 208 ~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
+.....+++++..+.||.|++|||.
T Consensus 223 ~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 223 NFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred ceEEEEEehhhhcccccEEEecCCC
Confidence 3344445899888999999999983
No 17
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.95 E-value=2.7e-27 Score=206.78 Aligned_cols=157 Identities=24% Similarity=0.318 Sum_probs=132.7
Q ss_pred CCcchhHHHHHHHHHHhcCCeEEEEEeCCCcee---------------------eeccceeeeeccccccccCCCccEEE
Q 019238 169 NGSEEMEAVIIIDILRRAKANVVVASVADKLEI---------------------LASCQVKLVADMLIDEAAKLSYDLIV 227 (344)
Q Consensus 169 ~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v---------------------~~~~g~~v~~~~~~~~~~~~~~D~li 227 (344)
.|++..|+..+++.|+++|++++++|++++.++ .+..+..+.++..+++++..+||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 699999999999999999999999999764111 12334567778889998889999999
Q ss_pred EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-------CCCCCCeeeeCcCch-------------
Q 019238 228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKKATAFPAMC------------- 287 (344)
Q Consensus 228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-------GlL~g~~~T~~~~~~------------- 287 (344)
||||++++..+.+++.+.++|++|++++|+|++||+|+++ |+.+ ++++||++|+++...
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~-L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~ 178 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAI-LANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR 178 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHH-HHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence 9999877788899999999999999999999999999976 7766 899999999998754
Q ss_pred ------hhhcc--CCcC------CCcEEEeCCeEeCCCcccHHHHHHHHHHHh
Q 019238 288 ------NKLSN--QSEI------ENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326 (344)
Q Consensus 288 ------~~~~~--~~~~------~~~~v~dg~liT~~g~~~~~~~~~~li~~l 326 (344)
+.+++ +.+. +..+|+||||||++++.++.+|+++|++.|
T Consensus 179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 23332 3333 456999999999999999999999999875
No 18
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=192.18 Aligned_cols=170 Identities=35% Similarity=0.587 Sum_probs=149.3
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC-ceeeeccc-eeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK-LEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~-~~v~~~~g-~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
++||+|++++||++.|+..|+++|+++|+.++++++.++ ..+.+..| ..+.++..+++.++.+||+|++|||..++..
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 589999999999999999999999999999999999874 35555554 6777778888886679999999999434566
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeCcCchhhhcc------CCcCCC-----cEEEeCC
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSN------QSEIEN-----RVVVDGN 305 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~~~~~~~~~~------~~~~~~-----~~v~dg~ 305 (344)
+..++.+++|++++++++|+|++||+|+++ |+.+| +++||++|+++...+...+ ..+.+. .++.||+
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~-L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~ 160 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAV-LAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN 160 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHH-HhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence 667799999999999999999999999866 99999 9999999999988887766 566666 9999999
Q ss_pred -eEeCCCcccHHHHHHHHHHHhcCHH
Q 019238 306 -LVTSRGPGTSMEFALAIVEKFFGRN 330 (344)
Q Consensus 306 -liT~~g~~~~~~~~~~li~~l~g~~ 330 (344)
++|+.++.++.+|+.++++.+.+..
T Consensus 161 ~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 161 ALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred eEEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999998764
No 19
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.94 E-value=2.1e-26 Score=201.10 Aligned_cols=157 Identities=26% Similarity=0.370 Sum_probs=133.2
Q ss_pred CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee--------------------ccceeeeeccccccccCCCccEEE
Q 019238 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------------SCQVKLVADMLIDEAAKLSYDLIV 227 (344)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~--------------------~~g~~v~~~~~~~~~~~~~~D~li 227 (344)
.+||++.|+..|++.|+++|++++++|++++ ++.. ..|..+.++..++++++.+||+|+
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ 95 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF 95 (221)
T ss_pred cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence 3799999999999999999999999999885 3211 234568889999999888999999
Q ss_pred EcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC------CCCCCeeeeCcCchhh------------
Q 019238 228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATAFPAMCNK------------ 289 (344)
Q Consensus 228 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG------lL~g~~~T~~~~~~~~------------ 289 (344)
||||......+.+++.+++||+++++++|+|++||+|+.+ |+++| +|+||++|+||...+.
T Consensus 96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~-La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~ 174 (221)
T cd03141 96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAA-LLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL 174 (221)
T ss_pred ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHH-HHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence 9999754556778999999999999999999999999854 99999 7999999999986554
Q ss_pred ---hcc--CCcC-----CCcEEEeCCeEeCCCcccHHHHHHHHHHHh
Q 019238 290 ---LSN--QSEI-----ENRVVVDGNLVTSRGPGTSMEFALAIVEKF 326 (344)
Q Consensus 290 ---~~~--~~~~-----~~~~v~dg~liT~~g~~~~~~~~~~li~~l 326 (344)
+++ ..+. +..+|+|+||||++|+.++.+|++++|+.+
T Consensus 175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 332 2233 356999999999999999999999999874
No 20
>PRK04155 chaperone protein HchA; Provisional
Probab=99.94 E-value=8.8e-26 Score=202.35 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=135.1
Q ss_pred CCeEEEEeC--------------CCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeec-----------------ccee
Q 019238 160 SPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----------------CQVK 208 (344)
Q Consensus 160 ~~~v~ill~--------------~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~-----------------~g~~ 208 (344)
.|||+|++. .|+++.|+..|++.|+++|++++++|++++ ++... .+..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence 468888876 589999999999999999999999999885 43221 1222
Q ss_pred eeeccccccc----c--CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC------CCC
Q 019238 209 LVADMLIDEA----A--KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLK 276 (344)
Q Consensus 209 v~~~~~~~~~----~--~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG------lL~ 276 (344)
+..+..++++ . +.+||+|+||||++.+..+..++.+.++|+++++++|+|++||+|++. |..+| +++
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~-Ll~a~~~~g~~ll~ 206 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAA-LLAAGVDHGDNPLN 206 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHH-HHHcCCcCCCcccC
Confidence 3333334433 2 579999999999988888999999999999999999999999999976 66688 999
Q ss_pred CCeeeeCcCchh-------------------hhcc--CCcCC----CcEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238 277 GKKATAFPAMCN-------------------KLSN--QSEIE----NRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327 (344)
Q Consensus 277 g~~~T~~~~~~~-------------------~~~~--~~~~~----~~~v~dg~liT~~g~~~~~~~~~~li~~l~ 327 (344)
||++|+++...+ .+++ ..+.+ ..+|+||||||++|+.++.+|++.+++.|.
T Consensus 207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll 282 (287)
T PRK04155 207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL 282 (287)
T ss_pred CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence 999999987633 3432 23333 689999999999999999999999999886
No 21
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.93 E-value=1.1e-25 Score=196.76 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=134.7
Q ss_pred EeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee-----------------ccceeeeeccccccc------cCCC
Q 019238 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----------------SCQVKLVADMLIDEA------AKLS 222 (344)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----------------~~g~~v~~~~~~~~~------~~~~ 222 (344)
.+..||++.|+..|+++|+++|++++++|++++ .+.. ..+..+..+..++++ ++.+
T Consensus 18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d 96 (232)
T cd03148 18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE 96 (232)
T ss_pred CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence 446899999999999999999999999999886 3321 133456777888887 4579
Q ss_pred ccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCC------CCCCeeeeCcCchhhhc-----
Q 019238 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL------LKGKKATAFPAMCNKLS----- 291 (344)
Q Consensus 223 ~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGl------L~g~~~T~~~~~~~~~~----- 291 (344)
||+|++|||++++..+.+++.+.++++++++++|+|++||+|++. |..+++ ++||++|+++...|...
T Consensus 97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~-L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~ 175 (232)
T cd03148 97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAA-FLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG 175 (232)
T ss_pred ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHH-HHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence 999999999988888999999999999999999999999999976 767888 99999999998876422
Q ss_pred ---c--------------CCc----CCCcEEEeCCeEeCCCcccHHHHHHHHHHHhc
Q 019238 292 ---N--------------QSE----IENRVVVDGNLVTSRGPGTSMEFALAIVEKFF 327 (344)
Q Consensus 292 ---~--------------~~~----~~~~~v~dg~liT~~g~~~~~~~~~~li~~l~ 327 (344)
+ +.+ .+..+|+||||||++++.|+..++.++++.++
T Consensus 176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 1 111 24479999999999999999999999999864
No 22
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.93 E-value=2.8e-25 Score=182.10 Aligned_cols=137 Identities=45% Similarity=0.749 Sum_probs=120.2
Q ss_pred eEEEEEeCCCceeeeccc---eeeeeccccccccCCCccEEEEcCCccchHhhhcC-HHHHHHHHHHHhcCCcEEEEcch
Q 019238 189 NVVVASVADKLEILASCQ---VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS-KKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 189 ~v~~~s~~~~~~v~~~~g---~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~-~~l~~~l~~~~~~~k~I~aic~G 264 (344)
+|+++++..+..+.++.| ..+.++..++++++.+||+|+||||.++...+..+ +.++++|+++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 478899988768999999 99999999999999999999999998767788745 99999999999999999999999
Q ss_pred hhhhhhhcCCCCCCeeeeCcCchhhhcc--CCcC--CCcEEEeC-CeEeCCCcccHHHHHHHHHHHh
Q 019238 265 PALVLEPHGLLKGKKATAFPAMCNKLSN--QSEI--ENRVVVDG-NLVTSRGPGTSMEFALAIVEKF 326 (344)
Q Consensus 265 ~~~lLa~aGlL~g~~~T~~~~~~~~~~~--~~~~--~~~~v~dg-~liT~~g~~~~~~~~~~li~~l 326 (344)
+.+ |+++|+|+|+++|+++...+.++. ..+. +..+++|+ ||||++|+.++.+|+++|++.|
T Consensus 81 ~~~-L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 PAV-LAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp HHH-HHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred cch-hhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 855 999999999999999999886654 3344 48899999 9999999999999999999987
No 23
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.90 E-value=4.8e-23 Score=178.08 Aligned_cols=152 Identities=25% Similarity=0.343 Sum_probs=121.5
Q ss_pred CCeEEEEeC-----CCcchhHHHHHHHHHHhcCCeEEEEEeCCCc----------eeeeccceeeeec-------ccccc
Q 019238 160 SPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDE 217 (344)
Q Consensus 160 ~~~v~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~~-------~~~~~ 217 (344)
++||+|++. +||++.|+..|++.|+++|++++++|++++. ++....++.+..+ ..+++
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 368999998 9999999999999999999999999998752 1222334444433 57788
Q ss_pred ccCCCccEEEEcCCccchHh----------hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeC--cC
Q 019238 218 AAKLSYDLIVLPGGLGGAQA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF--PA 285 (344)
Q Consensus 218 ~~~~~~D~liipGG~~~~~~----------l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~--~~ 285 (344)
+++.+||+|++|||++.+.. ++.++.+++++++|++++|+|++||+|+++ |+.+.. +||++|++ +.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~i-L~~~~~-~gr~~T~~~~~~ 158 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAM-LPKILG-AGVKLTIGNDED 158 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHH-HHHHhc-cCcEEEecCChh
Confidence 88889999999999765432 345899999999999999999999999976 766522 89999999 88
Q ss_pred chhhhcc--CCcCCC---cEEEe--CCeEeCCCcc
Q 019238 286 MCNKLSN--QSEIEN---RVVVD--GNLVTSRGPG 313 (344)
Q Consensus 286 ~~~~~~~--~~~~~~---~~v~d--g~liT~~g~~ 313 (344)
.++.+++ +.+.+. .+|+| +|+||+....
T Consensus 159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYM 193 (217)
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCccc
Confidence 8888876 455553 67887 7899998643
No 24
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.90 E-value=2.9e-23 Score=175.94 Aligned_cols=132 Identities=52% Similarity=0.788 Sum_probs=116.4
Q ss_pred CeeehhHHHHHhCCCeEEE--EEecCCcceecCCCCEEEcCcccccc--ccC------CCchhhhcccCChHHHHHHHHH
Q 019238 1 MEAVITIDVLRRSGADVVV--ASVEKQLRVDACHGVKIVADALVSNC--RDA------CGMPGATNLKESEVLESIVKKQ 70 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~--vs~~~~~~v~~~~g~~~~~d~~~~~~--~~~------gG~~~~~~~~~~~~~~~~l~~~ 70 (344)
+|+..|+++|+++|+++++ +|+++++++++++|+.+.+|..+++. +++ ||......+.+++.+++||+++
T Consensus 13 ~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~ 92 (179)
T TIGR01383 13 MEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQ 92 (179)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHH
Confidence 3778999999999977775 99986458999999999999988874 223 6644455566789999999999
Q ss_pred hhCCCEEEEEchhHHHHHHHcCCCCCCC------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChh
Q 019238 71 ASDGRLYAAICVFLAVALGSWGLLKGLK------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG 126 (344)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aGll~g~~------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~ 126 (344)
++++++|+++|+|+ ++||++|+|+||+ |||++||+|+.+++||++++|+++.|++
T Consensus 93 ~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~ 171 (179)
T TIGR01383 93 ESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKE 171 (179)
T ss_pred HHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence 99999999999999 5999999999987 8999999999999999999999999999
Q ss_pred HHHHHhh
Q 019238 127 KADEVSG 133 (344)
Q Consensus 127 ~a~~v~~ 133 (344)
.|+++++
T Consensus 172 ~a~~va~ 178 (179)
T TIGR01383 172 KAQEVAA 178 (179)
T ss_pred HHHHhhc
Confidence 9999875
No 25
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.89 E-value=1.2e-22 Score=174.78 Aligned_cols=140 Identities=37% Similarity=0.564 Sum_probs=121.5
Q ss_pred CeeehhHHHHHhCCCeEEEEEecC--CcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHH
Q 019238 1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ 70 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~--~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~ 70 (344)
+|++.|+++|++++++++++|+++ +.+|++++|+.+.+|..+++++ ++ ||......+.+++.+.+||+++
T Consensus 16 ~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~ 95 (196)
T PRK11574 16 TEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQF 95 (196)
T ss_pred hhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHH
Confidence 488999999999999999999864 2379999999999999998764 22 6654556667889999999999
Q ss_pred hhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CC--CEEcCCCCCcHHHHHHHHHHHHcCh
Q 019238 71 ASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DG--KVVTTRGPGTPMEFVVALVEQLYGK 125 (344)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg--~~iT~~g~~~~~~~~~~lv~~~~g~ 125 (344)
+++|++|++||+|++++|+.+|+|+|++ |+ |+|||+|+++++||++++|++++|+
T Consensus 96 ~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~ 175 (196)
T PRK11574 96 HRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGR 175 (196)
T ss_pred HHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence 9999999999999942466799998876 44 9999999999999999999999999
Q ss_pred hHHHHHhhccccccc
Q 019238 126 GKADEVSGARVMRAN 140 (344)
Q Consensus 126 ~~a~~v~~~~~~~~~ 140 (344)
+.|+++++.|.++..
T Consensus 176 ~~a~~va~~~~~~~~ 190 (196)
T PRK11574 176 EKAHEVASQLVMAAG 190 (196)
T ss_pred HHHHHHHhhhccCcc
Confidence 999999999987653
No 26
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.89 E-value=7.1e-23 Score=174.84 Aligned_cols=134 Identities=25% Similarity=0.355 Sum_probs=120.1
Q ss_pred CeeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHH
Q 019238 1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV 67 (344)
Q Consensus 1 ~E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l 67 (344)
.|+..|+|+|++++ |+++++|+++ .++++++|+++.+|..+++.+++ || .......+++.+.+||
T Consensus 12 ~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~v~~d~~~~~~~~~D~liipGg-~~~~~~~~~~~l~~~l 89 (187)
T cd03137 12 LDLSGPAEVFGEANRALGPPAYELRVCSPEG-GPVRSSSGLSLVADAGLDALAAADTVIVPGG-PDVDGRPPPPALLAAL 89 (187)
T ss_pred hHHhHHHHHHHHHHhhcCCCCeEEEEEeCCC-CceeecCCcEEEcCcCccccCCCCEEEECCC-cccccccCCHHHHHHH
Confidence 36788999999887 9999999996 59999999999999988765543 65 3444467899999999
Q ss_pred HHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238 68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV 119 (344)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv 119 (344)
+++++++++|+++|+|+ ++|+++|+|+|++ |||++||+|+.+++|+++++|
T Consensus 90 ~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li 168 (187)
T cd03137 90 RRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLV 168 (187)
T ss_pred HHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHH
Confidence 99999999999999999 5999999999987 899999999999999999999
Q ss_pred HHHcChhHHHHHhhcccc
Q 019238 120 EQLYGKGKADEVSGARVM 137 (344)
Q Consensus 120 ~~~~g~~~a~~v~~~~~~ 137 (344)
++++|++.++++++.|.+
T Consensus 169 ~~~~g~~~a~~~a~~l~~ 186 (187)
T cd03137 169 REDLGAAVANRVARRLVV 186 (187)
T ss_pred HHHhCHHHHHHHHHHhcc
Confidence 999999999999998864
No 27
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.89 E-value=9.1e-23 Score=175.32 Aligned_cols=134 Identities=24% Similarity=0.305 Sum_probs=117.9
Q ss_pred eeehhHHHHHh------------CCCeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhh--cccCCh
Q 019238 2 EAVITIDVLRR------------SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGAT--NLKESE 61 (344)
Q Consensus 2 E~~~~~~~l~~------------~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~--~~~~~~ 61 (344)
|+..|+|+|+. .+|+|+++|+++ ++|++++|+++.+|..+++.+++ ||..... .+..++
T Consensus 13 ~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~-~~v~s~~g~~i~~d~~~~~~~~~D~liIpgg~~~~~~~~~~~~~ 91 (195)
T cd03138 13 SLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDG-GPVLLAGGILILPDATLADVPAPDLVIVPGLGGDPDELLLADNP 91 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCC-CeeecCCCceecccccccccCCCCEEEECCCcCCchhhhhhccH
Confidence 45677787753 469999999996 59999999999999998877655 5533333 467899
Q ss_pred HHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHH
Q 019238 62 VLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPME 113 (344)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~ 113 (344)
.+++||+++++++++|++||+|+ ++|+++|+|+||+ |||++||+|+.+++|
T Consensus 92 ~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d 170 (195)
T cd03138 92 ALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWAD 170 (195)
T ss_pred HHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHH
Confidence 99999999999999999999999 5999999999987 899999999999999
Q ss_pred HHHHHHHHHcChhHHHHHhhcccc
Q 019238 114 FVVALVEQLYGKGKADEVSGARVM 137 (344)
Q Consensus 114 ~~~~lv~~~~g~~~a~~v~~~~~~ 137 (344)
|++++|+++.|++.|+++++.|.+
T Consensus 171 ~al~li~~~~G~~~a~~va~~l~~ 194 (195)
T cd03138 171 LALHLIERLAGPELAQLVARFLLI 194 (195)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhcc
Confidence 999999999999999999998865
No 28
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.89 E-value=1.2e-22 Score=172.86 Aligned_cols=135 Identities=23% Similarity=0.384 Sum_probs=122.6
Q ss_pred CeeehhHHHHHhCC-----CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHH
Q 019238 1 MEAVITIDVLRRSG-----ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKK 69 (344)
Q Consensus 1 ~E~~~~~~~l~~~~-----~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~ 69 (344)
.|+..++|+|++++ |+++++|+++ .+|++++|+.+.+|..+++...+ || .....+..++.+++||++
T Consensus 12 ~~~~~~~d~~~~a~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg-~~~~~~~~~~~~~~~l~~ 89 (183)
T cd03139 12 LDVIGPYEVFGRAPRLAAPFEVFLVSETG-GPVSSRSGLTVLPDTSFADPPDLDVLLVPGG-GGTRALVNDPALLDFIRR 89 (183)
T ss_pred ehheeHHHHHHHhhccCCCEEEEEEECCC-CceEeCCCCEEcCCcccccCCCCCEEEECCC-cchhhhccCHHHHHHHHH
Confidence 47889999999998 9999999996 59999999999999999876544 66 445557789999999999
Q ss_pred HhhCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHHc
Q 019238 70 QASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLY 123 (344)
Q Consensus 70 ~~~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~~ 123 (344)
+++++++|+++|+|+ ++|+++|+|+||+ |||++||+|+.+++||++++|+++.
T Consensus 90 ~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~ 168 (183)
T cd03139 90 QAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLF 168 (183)
T ss_pred hcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHh
Confidence 999999999999999 5999999999997 7999999999999999999999999
Q ss_pred ChhHHHHHhhccccc
Q 019238 124 GKGKADEVSGARVMR 138 (344)
Q Consensus 124 g~~~a~~v~~~~~~~ 138 (344)
|++.++++++.|.|+
T Consensus 169 g~~~a~~~a~~~~~~ 183 (183)
T cd03139 169 GEELAQAVALLIEYD 183 (183)
T ss_pred CHHHHHHHHHHhccC
Confidence 999999999998763
No 29
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.89 E-value=9.5e-23 Score=173.73 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=119.2
Q ss_pred eeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHH
Q 019238 2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK 68 (344)
Q Consensus 2 E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~ 68 (344)
|+..|+|+|++++ |+|+++|.++ +++++++|+++.+|..+.+.+++ ||... . +..++.+++||+
T Consensus 13 ~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~~~-~-~~~~~~~~~~l~ 89 (185)
T cd03136 13 ALASAIEPLRAANRLAGRELYRWRVLSLDG-APVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGA-R-RAVTPALLAWLR 89 (185)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEcCCC-CeeecCCCcEEeCCccccccCCCCEEEEeCCCCc-c-ccCCHHHHHHHH
Confidence 6788999998764 8999999996 69999999999999988776544 66433 3 678999999999
Q ss_pred HHhhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCEEcCCCCCcHHHHHHHHHHH
Q 019238 69 KQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQ 121 (344)
Q Consensus 69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~~~~lv~~ 121 (344)
++++++++|+++|+|+ ++|+++|+|+|++ |||++||+|+.+++||+++++++
T Consensus 90 ~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~~ 168 (185)
T cd03136 90 RAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIAR 168 (185)
T ss_pred HHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHHH
Confidence 9999999999999999 5999999999997 89999999999999999999999
Q ss_pred HcChhHHHHHhhccccc
Q 019238 122 LYGKGKADEVSGARVMR 138 (344)
Q Consensus 122 ~~g~~~a~~v~~~~~~~ 138 (344)
++|++.|+++++.|+++
T Consensus 169 ~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 169 DHGAALAARVAEQFLHD 185 (185)
T ss_pred HhCHHHHHHHHHHHccC
Confidence 99999999999998764
No 30
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.88 E-value=1e-21 Score=160.14 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=104.4
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
++||+|+++|||++.|+..+.+.|+.+|++++++|++++ ++.++.|..+.++.++++..+.+||+|+||||......+.
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~ 79 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA 79 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence 378999999999999999999999999999999999997 9999999999999999988666899999999965455557
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCC
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL 275 (344)
.++.+++||+++++++++|+++|+|+. +|+++|+|
T Consensus 80 ~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll 114 (142)
T cd03132 80 PSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIP 114 (142)
T ss_pred cChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCC
Confidence 889999999999999999999999975 59999997
No 31
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.88 E-value=6.4e-22 Score=178.68 Aligned_cols=155 Identities=18% Similarity=0.301 Sum_probs=126.3
Q ss_pred CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHH
Q 019238 15 ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL 88 (344)
Q Consensus 15 ~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~L 88 (344)
|.|.+++.++. +|++++|+.+.+|..+++.... +|. ........+++..||++.+++|..+++||+|+ |+|
T Consensus 45 ~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGa-f~L 121 (328)
T COG4977 45 YVWSIVSADGG-PVRSSSGLSIAPDGGLEAAPPIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTGA-FVL 121 (328)
T ss_pred cceEEeecCCC-CcccCCCceEecCCcccccCcceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHhH-HHH
Confidence 67999999974 9999999999999999888754 442 33333344889999999999999999999999 699
Q ss_pred HHcCCCCCCC---------------------------CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccC
Q 019238 89 GSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANH 141 (344)
Q Consensus 89 a~aGll~g~~---------------------------dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~ 141 (344)
|++||||||+ ||+++||+|..+++|||++||++.+|.+.|.+|++.+++++..
T Consensus 122 A~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R 201 (328)
T COG4977 122 AEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIR 201 (328)
T ss_pred HHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccc
Confidence 9999999999 9999999999999999999999999999999999999998744
Q ss_pred CCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhc
Q 019238 142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRA 186 (344)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~ 186 (344)
... ...++......+.....+..+++.++..
T Consensus 202 ~~~--------------~~Q~~~~~~~~~~~~~~l~~~i~~me~n 232 (328)
T COG4977 202 SGG--------------DRQRLPLLGRLGHRDPRLLRAIELMEAN 232 (328)
T ss_pred CCC--------------ccccccccccCCCCCHHHHHHHHHHHHh
Confidence 211 0122333344455666777777777664
No 32
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.88 E-value=4.6e-22 Score=170.81 Aligned_cols=152 Identities=24% Similarity=0.323 Sum_probs=118.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCc----------eeeeccceeeeec-------cccccccCCCccEEEEcC
Q 019238 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEAAKLSYDLIVLPG 230 (344)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~~-------~~~~~~~~~~~D~liipG 230 (344)
+|||++.|+..|+++|+++|++++++|++++. .+....++.+.++ .+++++++.+||+|+|||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 57999999999999999999999999997642 2223445556555 678888778999999999
Q ss_pred CccchHhh----------hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCc--Cchhhhcc--CCcC
Q 019238 231 GLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP--AMCNKLSN--QSEI 296 (344)
Q Consensus 231 G~~~~~~l----------~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~--~~~~~~~~--~~~~ 296 (344)
|++....+ +.++.+++++++|++++|+|++||+|+++ |+.++. +||++|+++ ..++.+++ +.+.
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~-L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~ 168 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPAL-AAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV 168 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHH-HHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence 97654443 24889999999999999999999999976 777655 999999999 78888875 4444
Q ss_pred C---CcEEEe--CCeEeCCCcc---cHHHHHHH
Q 019238 297 E---NRVVVD--GNLVTSRGPG---TSMEFALA 321 (344)
Q Consensus 297 ~---~~~v~d--g~liT~~g~~---~~~~~~~~ 321 (344)
+ ..+++| ||||||+... +..+.++.
T Consensus 169 d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~ 201 (213)
T cd03133 169 NCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG 201 (213)
T ss_pred eCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence 3 366666 7999998653 44444444
No 33
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.86 E-value=1.4e-21 Score=163.06 Aligned_cols=119 Identities=47% Similarity=0.768 Sum_probs=105.6
Q ss_pred eeehhHHHHHhCCCeEEEEEecCCcce-ecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238 2 EAVITIDVLRRSGADVVVASVEKQLRV-DACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS 72 (344)
Q Consensus 2 E~~~~~~~l~~~~~~~~~vs~~~~~~v-~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~ 72 (344)
|+..|+++|+.++|+++++|++++ ++ .+++|+.+.+|..+++.+ ++ ||......+.+++++++||+++++
T Consensus 13 e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~ 91 (163)
T cd03135 13 EAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNA 91 (163)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHH
Confidence 678899999999999999999975 65 468999999999998873 33 664255666789999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 73 DGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
++++|++||+|+ ++|+++|+|+||+ |||++||+|+.+++||++++|+++
T Consensus 92 ~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 92 KGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred cCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence 999999999999 5999999999997 899999999999999999999874
No 34
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.83 E-value=3e-20 Score=171.95 Aligned_cols=137 Identities=23% Similarity=0.342 Sum_probs=120.1
Q ss_pred CeeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHH
Q 019238 1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV 67 (344)
Q Consensus 1 ~E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l 67 (344)
+|+..|+|+|+.++ |+|+++|+++ .+|++++|+.+.+|..+++.+++ || .+... ..++.+.+||
T Consensus 23 ~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~-~~v~ss~g~~i~~d~~~~~~~~~D~livpGg-~~~~~-~~~~~l~~~l 99 (322)
T PRK09393 23 FEFGCAVEIFGLPRPELGVDWYRFAVAAVEP-GPLRAAGGITVVADGGLELLDRADTIVIPGW-RGPDA-PVPEPLLEAL 99 (322)
T ss_pred hHHHHHHHHHHHHHhhcCCCceEEEEEECCC-CceEeCCCcEEeCCCCccccCCCCEEEECCC-Ccccc-cCCHHHHHHH
Confidence 47789999995432 7999999996 59999999999999999877654 54 33332 4689999999
Q ss_pred HHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHH
Q 019238 68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV 119 (344)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv 119 (344)
+++++++++|++||+|+ ++||++|||+|++ |||++||+|+.+++|++++++
T Consensus 100 ~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li 178 (322)
T PRK09393 100 RAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLV 178 (322)
T ss_pred HHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHH
Confidence 99999999999999999 5999999999998 799999999999999999999
Q ss_pred HHHcChhHHHHHhhcccccccC
Q 019238 120 EQLYGKGKADEVSGARVMRANH 141 (344)
Q Consensus 120 ~~~~g~~~a~~v~~~~~~~~~~ 141 (344)
++..|.+.++.+++.|++++..
T Consensus 179 ~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 179 RRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred HHHhCHHHHHHHHHHhCcCcCC
Confidence 9999999999999999987543
No 35
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.83 E-value=2.1e-20 Score=156.41 Aligned_cols=116 Identities=28% Similarity=0.447 Sum_probs=103.7
Q ss_pred eeehhHHHHHhCC-------CeEEEEEecCCcceecCCCCEEEcCccccccccC------CCchhhhcccCChHHHHHHH
Q 019238 2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK 68 (344)
Q Consensus 2 E~~~~~~~l~~~~-------~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~ 68 (344)
|+..++|+|+.++ |+++++|.++ +++.+++|+.+.++..+++.... ||. .......++.+++||+
T Consensus 10 ~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~-~~v~~s~g~~i~~~~~~~~~~~~D~lvvpg~~-~~~~~~~~~~l~~~l~ 87 (166)
T PF13278_consen 10 ELAGPLDVLRAANRLSGEPLFEVRLVSPTG-GPVTSSSGLRIQPDGSLDDAPDFDILVVPGGP-GFDAAAKDPALLDWLR 87 (166)
T ss_dssp HHHHHHHHHTTCTHHCTTTTEEEEEEESSS-CEEEBTTSEEEEESEETCCCSCCSEEEEE-ST-THHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhchhhcCCCCeEEEEEecCC-CeeeecCCeEEEeccChhhcccCCEEEeCCCC-CchhcccCHHHHHHhh
Confidence 6778999998888 9999999996 59999999999999999986644 653 3455678899999999
Q ss_pred HHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCEEcCCCCCcHHHHHHHHHH
Q 019238 69 KQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVE 120 (344)
Q Consensus 69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~~~~lv~ 120 (344)
++++++++++++|+|+ ++||++|+|+|++ |||++||+|+.+++|+++++||
T Consensus 88 ~~~~~~~~i~aic~G~-~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 88 QQHAQGTYIAAICTGA-LLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp HHHCCTSEEEEETTHH-HHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred hhhccceEEeeeehHH-HHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence 9999999999999999 6999999999998 9999999999999999999997
No 36
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.82 E-value=4.9e-20 Score=154.23 Aligned_cols=119 Identities=29% Similarity=0.364 Sum_probs=106.5
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS 72 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~ 72 (344)
.|+..|+++|+++||+++++|+++ +++++++|+.+.++..+++++ ++ || .....+..++.+.+||+++++
T Consensus 13 ~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg-~~~~~~~~~~~l~~~l~~~~~ 90 (166)
T TIGR01382 13 SELLYPLDRLREAGHEVDTVSKEA-GTTVGKHGYSVTVDATIDEVNPEEYDALVIPGG-RAPEYLRLNNKAVRLVREFVE 90 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCC-CceeccCCceeeccCChhhCCHHHCcEEEECCC-CCHHHhccCHHHHHHHHHHHH
Confidence 377899999999999999999986 589999999999999998775 22 66 345556678999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 73 DGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
+++++++||+|+ ++||++|||+||+ |||+|||+|+.++.+|+.++++++
T Consensus 91 ~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 91 KGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL 165 (166)
T ss_pred cCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence 999999999999 5999999999998 899999999999999999999986
No 37
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.82 E-value=7.9e-20 Score=153.52 Aligned_cols=117 Identities=28% Similarity=0.403 Sum_probs=102.5
Q ss_pred CeeehhHHHHHhC-CCeEEEEEecCCcceecCCCCEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHh
Q 019238 1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA 71 (344)
Q Consensus 1 ~E~~~~~~~l~~~-~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~ 71 (344)
+|++.|+++|+++ +|+|+++++++ .++++++|+.+.++..+++.+ ++ ||. ... ...++.+++||++++
T Consensus 12 ~e~~~~~~~l~~~~~~~~~~~s~~~-~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~~~l~~~l~~~~ 88 (170)
T cd03140 12 WEGAYLAALLNSYEGFEVRTVSPTG-EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEAPDLAGLVRQAL 88 (170)
T ss_pred hHHHHHHHHhcccCCcEEEEEeCCC-CeeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCcHHHHHHHHHHH
Confidence 5889999999987 89999999996 599999999999999998873 23 663 322 347899999999999
Q ss_pred hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
+++++|++||+|+ ++||++|+|+||+ |||+|||+|.+ ++||++++++++
T Consensus 89 ~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~d~al~~i~~l 166 (170)
T cd03140 89 KQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PVEFAAEILRAL 166 (170)
T ss_pred HcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HHHHHHHHHHHc
Confidence 9999999999999 5999999999997 89999998755 799999999986
No 38
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.80 E-value=1.6e-19 Score=150.96 Aligned_cols=117 Identities=30% Similarity=0.415 Sum_probs=104.2
Q ss_pred eeehhHHHHHhCCCeEEEEEecCCcceecCCCC-EEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHHhh
Q 019238 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGV-KIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQAS 72 (344)
Q Consensus 2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~-~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~~ 72 (344)
|+..++++|++++|+++++|++++.+++++.|+ .+.+|..+++.. ++ ||. ....+..++.+++||+++++
T Consensus 14 e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~~~ 92 (165)
T cd03134 14 ELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAFAE 92 (165)
T ss_pred HHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHHHH
Confidence 678899999999999999999922589999999 999999998764 22 664 45556778999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHHHHHHHHHH
Q 019238 73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVE 120 (344)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~~~~lv~ 120 (344)
++++|+++|+|+ ++|+++|+|+|++ |||+|||+|+.++++|+..+++
T Consensus 93 ~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 93 AGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred cCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence 999999999999 5999999999998 8999999999999999999986
No 39
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.79 E-value=1.1e-19 Score=158.85 Aligned_cols=121 Identities=24% Similarity=0.305 Sum_probs=103.3
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCcce---------------------ecCCCCEEEcCccccccc--cC------CCc
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRV---------------------DACHGVKIVADALVSNCR--DA------CGM 51 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v---------------------~~~~g~~~~~d~~~~~~~--~~------gG~ 51 (344)
.|++.|+++|+++|++|+++|++++.++ .++.+..+.++..++|++ +| ||+
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~ 104 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH 104 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence 3889999999999999999999853111 123445667788888775 23 888
Q ss_pred hhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc-------CCCCCCC--------------------------
Q 019238 52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK-------------------------- 98 (344)
Q Consensus 52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~-------------------------- 98 (344)
+++.++.+|+.++++|++++++||+|++|||||+ +|+.+ ++++||+
T Consensus 105 g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~ 183 (231)
T cd03147 105 GTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESI 183 (231)
T ss_pred chhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccH
Confidence 7888899999999999999999999999999996 99988 8999887
Q ss_pred ------------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 99 ------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 99 ------------------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
|||+||+++|.++.+|++.+++++
T Consensus 184 e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 184 EDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred HHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 799999999999999999999874
No 40
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.79 E-value=6.6e-19 Score=149.33 Aligned_cols=120 Identities=26% Similarity=0.320 Sum_probs=102.9
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCc--ceec-------------CCCCEEEcCccccccc--cC------CCchhhhcc
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQL--RVDA-------------CHGVKIVADALVSNCR--DA------CGMPGATNL 57 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~--~v~~-------------~~g~~~~~d~~~~~~~--~~------gG~~~~~~~ 57 (344)
.|+..|+++|+++|++++++|++++. ++.. ..|+.+.++..+++++ .+ ||. +...+
T Consensus 13 ~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~ 91 (180)
T cd03169 13 YEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYL 91 (180)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCC-Chhhh
Confidence 37889999999999999999999641 3333 3689999999998865 22 663 44445
Q ss_pred cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCEEcCCCCCcHH
Q 019238 58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPM 112 (344)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~ 112 (344)
..++.+++||+++++++++|++||+|+ ++|+++|||+||+ |||+|||+|+.++.
T Consensus 92 ~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~ 170 (180)
T cd03169 92 RLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHP 170 (180)
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEecCCchHH
Confidence 678999999999999999999999999 5999999999998 89999999999999
Q ss_pred HHHHHHHHHH
Q 019238 113 EFVVALVEQL 122 (344)
Q Consensus 113 ~~~~~lv~~~ 122 (344)
+|+.++++.+
T Consensus 171 ~f~~~~~~~l 180 (180)
T cd03169 171 AFLREFLKLL 180 (180)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 41
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.77 E-value=2.6e-18 Score=140.77 Aligned_cols=106 Identities=38% Similarity=0.559 Sum_probs=95.8
Q ss_pred eEEEEEecCCcceecCCC---CEEEcCcccccccc--C------CCchhhhcccCC-hHHHHHHHHHhhCCCEEEEEchh
Q 019238 16 DVVVASVEKQLRVDACHG---VKIVADALVSNCRD--A------CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 16 ~~~~vs~~~~~~v~~~~g---~~~~~d~~~~~~~~--~------gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
+|+++|+..++.+++++| ..+.+|..+++++. | ||.++...++.+ +.++++++++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 588999997779999999 99999999999874 3 887778888855 99999999999999999999999
Q ss_pred HHHHHHHcCCCCCCC---------------------------CC-CEEcCCCCCcHHHHHHHHHHHH
Q 019238 84 LAVALGSWGLLKGLK---------------------------DG-KVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 84 ~~~~La~aGll~g~~---------------------------dg-~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
|. +|+++|+|+||+ || |+||++|+.++.+|++.+++++
T Consensus 81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 95 999999999999 89 9999999999999999999987
No 42
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.75 E-value=4.1e-18 Score=149.15 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCccee-------------c---CCCCEEEcCccccccc--------cC------CC
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRVD-------------A---CHGVKIVADALVSNCR--------DA------CG 50 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~-------------~---~~g~~~~~d~~~~~~~--------~~------gG 50 (344)
.|++.|+++|+++||+++++|++|+.... . ..+..+..+..++++. +| ||
T Consensus 26 ~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG 105 (232)
T cd03148 26 VEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGG 105 (232)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCC
Confidence 38899999999999999999998642211 0 2344577888888772 33 88
Q ss_pred chhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC------CCCCC--------------------------
Q 019238 51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL------LKGLK-------------------------- 98 (344)
Q Consensus 51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl------l~g~~-------------------------- 98 (344)
++++.++++|+.+.+++++++++||+|++|||||+ +|..+++ ++||+
T Consensus 106 ~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~ 184 (232)
T cd03148 106 HGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWL 184 (232)
T ss_pred CCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccccc
Confidence 88899999999999999999999999999999996 9999999 88876
Q ss_pred -----------------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 99 -----------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
|||+||+++|.|+..++..+++.+
T Consensus 185 le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 185 VGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred HHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 899999999999999999999875
No 43
>PRK04155 chaperone protein HchA; Provisional
Probab=99.74 E-value=3.3e-18 Score=153.56 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=99.3
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCcceecC-----------------CCCEEEcCcccccc--------ccC------C
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRVDAC-----------------HGVKIVADALVSNC--------RDA------C 49 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~-----------------~g~~~~~d~~~~~~--------~~~------g 49 (344)
+|++.|+++|+++||+|+++|++|+ ++... .+-.+..+..++++ ++| |
T Consensus 77 ~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPG 155 (287)
T PRK04155 77 VETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPG 155 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECC
Confidence 4889999999999999999999864 33211 11222333333322 233 8
Q ss_pred CchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------
Q 019238 50 GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK------------------------- 98 (344)
Q Consensus 50 G~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~------------------------- 98 (344)
|++++..+++++.++++|+++++++|+|++|||||+ +|+.+| +++||+
T Consensus 156 G~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~ 234 (287)
T PRK04155 156 GHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWL 234 (287)
T ss_pred CCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccch
Confidence 888889999999999999999999999999999996 999999 999987
Q ss_pred -----------------------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238 99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG 124 (344)
Q Consensus 99 -----------------------dg~~iT~~g~~~~~~~~~~lv~~~~g 124 (344)
|||+||++||.++.+|++.+++.+..
T Consensus 235 ~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~ 283 (287)
T PRK04155 235 FGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA 283 (287)
T ss_pred HHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999863
No 44
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.74 E-value=4.1e-18 Score=148.82 Aligned_cols=120 Identities=25% Similarity=0.328 Sum_probs=101.4
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCcceec--------------------CCCCEEEcCccccccc--cC------CCch
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQLRVDA--------------------CHGVKIVADALVSNCR--DA------CGMP 52 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~~v~~--------------------~~g~~~~~d~~~~~~~--~~------gG~~ 52 (344)
.|++.|+++|+++|++|+++|++++ ++.. ..|..+.++..+++++ ++ ||..
T Consensus 23 ~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~ 101 (221)
T cd03141 23 EELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHG 101 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcc
Confidence 4889999999999999999999864 3211 2344577888888876 23 7754
Q ss_pred hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC------CCCCCC----------------------------
Q 019238 53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK---------------------------- 98 (344)
Q Consensus 53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~---------------------------- 98 (344)
....+.+++.+++||+++++++++|++||+|+ ++|+++| +|+||+
T Consensus 102 ~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (221)
T cd03141 102 PMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKE 180 (221)
T ss_pred cccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHH
Confidence 55668899999999999999999999999999 5999999 799986
Q ss_pred -----------------CCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 99 -----------------DGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 99 -----------------dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
|+|+||++|+.++.+|++++++.+
T Consensus 181 ~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 181 LGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred cCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 789999999999999999999874
No 45
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.72 E-value=1.2e-16 Score=158.19 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=122.7
Q ss_pred ChhHHHHHhhccccc-ccC------CCc-ceeeeccceeee-----cCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeE
Q 019238 124 GKGKADEVSGARVMR-ANH------GDE-FTIAEFNPVQWT-----FDNSPQILVPIANGSEEMEAVIIIDILRRAKANV 190 (344)
Q Consensus 124 g~~~a~~v~~~~~~~-~~~------~~~-~~l~~~~~~~~~-----~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v 190 (344)
..+.++.|++.+..+ +.. ... ..+.+.+.+++. ....+||+||++||++..|+..+.++|..+|+++
T Consensus 548 d~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V 627 (752)
T PRK11249 548 DLTLAQAVAENLGIPLTDEQLNITPPPDVNGLKKDPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHA 627 (752)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcCCCCCCcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEE
Confidence 445677777777663 222 001 113333444433 1257999999999999999999999999999999
Q ss_pred EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 191 VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 191 ~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++++++| +|.++.|..+.+|.++++..+..||+|+||||......+..++.+++||+++++++|+|+++|+|+. +|+
T Consensus 628 ~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~-LLa 705 (752)
T PRK11249 628 KLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARK-LKA 705 (752)
T ss_pred EEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHH-HHH
Confidence 99999997 9999999999999999998777899999999965567788899999999999999999999999975 499
Q ss_pred hcCCCC
Q 019238 271 PHGLLK 276 (344)
Q Consensus 271 ~aGlL~ 276 (344)
++||.+
T Consensus 706 aAGL~~ 711 (752)
T PRK11249 706 ALKLPD 711 (752)
T ss_pred hcCCCC
Confidence 999965
No 46
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.69 E-value=2.8e-16 Score=134.19 Aligned_cols=125 Identities=35% Similarity=0.497 Sum_probs=108.6
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCC-cceecCCC-CEEEcCccccccc--cC------CCchhhhcccCChHHHHHHHHH
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQ-LRVDACHG-VKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ 70 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~-~~v~~~~g-~~~~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~ 70 (344)
+|++.|+++|++++++++++++.++ ..+.+..| ..+.++..+++++ ++ ||..+...++.++.+++|++++
T Consensus 16 ~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~ 95 (188)
T COG0693 16 LELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDF 95 (188)
T ss_pred hhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHH
Confidence 5899999999999999999999963 35555555 6777878888886 44 7756677777779999999999
Q ss_pred hhCCCEEEEEchhHHHHHHHcC-CCCCCC----------------------------------CCC-EEcCCCCCcHHHH
Q 019238 71 ASDGRLYAAICVFLAVALGSWG-LLKGLK----------------------------------DGK-VVTTRGPGTPMEF 114 (344)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aG-ll~g~~----------------------------------dg~-~iT~~g~~~~~~~ 114 (344)
+++|++|++|||||+ +|+++| +++||+ ||| ++|+.++.+..++
T Consensus 96 ~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~ 174 (188)
T COG0693 96 YANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAF 174 (188)
T ss_pred HHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHH
Confidence 999999999999995 999999 999998 677 9999999999999
Q ss_pred HHHHHHHHcChh
Q 019238 115 VVALVEQLYGKG 126 (344)
Q Consensus 115 ~~~lv~~~~g~~ 126 (344)
+..+++++.+..
T Consensus 175 ~~~~~~~l~~~~ 186 (188)
T COG0693 175 ALELLKALGGAE 186 (188)
T ss_pred HHHHHHHHhccc
Confidence 999999988753
No 47
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.61 E-value=5.2e-15 Score=120.46 Aligned_cols=115 Identities=21% Similarity=0.153 Sum_probs=95.3
Q ss_pred eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD 73 (344)
Q Consensus 2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~ 73 (344)
|+..|+++|++++++++++|+++ +++++++|+.+.++..+++.+. + ||......+..++.+.+||++++++
T Consensus 16 e~~~~~~~~~~a~~~v~vvs~~~-~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~ 94 (142)
T cd03132 16 ELSALKAALKAAGANVKVVAPTL-GGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKH 94 (142)
T ss_pred HHHHHHHHHHHCCCEEEEEecCc-CceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhc
Confidence 67889999999999999999996 5999999999999999987652 2 6654445557889999999999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHHHHHHHHHHH
Q 019238 74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL 122 (344)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~~~~lv~~~ 122 (344)
+++|+++|+|+ ++|+++|+|- +|-+++|++++... +...+|+++
T Consensus 95 ~~~I~aic~G~-~~La~aGll~--~~~gv~~~~~~~~~--~~~~~~~~~ 138 (142)
T cd03132 95 GKPIGAVGEGS-DLLEAAGIPL--EDPGVVTADDVKDV--FTDRFIDAL 138 (142)
T ss_pred CCeEEEcCchH-HHHHHcCCCC--CCCcEEEecCcchH--HHHHHHHHH
Confidence 99999999999 5999999972 25799999866543 456666654
No 48
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.52 E-value=3e-14 Score=122.54 Aligned_cols=96 Identities=24% Similarity=0.300 Sum_probs=74.7
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCc----------ceecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCR--DA------CGMPGAT 55 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~----------~v~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~ 55 (344)
.|++.|+++|+|+|++++++|++++. .+....++.+.++ ..+++++ ++ ||+.++.
T Consensus 17 ~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~ 96 (213)
T cd03133 17 HEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAK 96 (213)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhh
Confidence 38899999999999999999997531 3444566666665 5677664 23 7765544
Q ss_pred cc----------cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 019238 56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98 (344)
Q Consensus 56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~ 98 (344)
.+ +.++.+++++++|+++||+|++||+||+ +|++++. +||+
T Consensus 97 ~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~ 147 (213)
T cd03133 97 NLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVE 147 (213)
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCe
Confidence 43 3589999999999999999999999996 9999765 7765
No 49
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.47 E-value=1.5e-13 Score=118.99 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=72.4
Q ss_pred CeeehhHHHHHhCCCeEEEEEecCCc----------ceecCCCCEEEcC-------ccccccc--cC------CCchhhh
Q 019238 1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCR--DA------CGMPGAT 55 (344)
Q Consensus 1 ~E~~~~~~~l~~~~~~~~~vs~~~~~----------~v~~~~g~~~~~d-------~~~~~~~--~~------gG~~~~~ 55 (344)
.|++.|+++|+++|++++++|++++. ++....++.+.++ ..+++++ ++ ||++++.
T Consensus 20 ~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~ 99 (217)
T PRK11780 20 HEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAK 99 (217)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhh
Confidence 48899999999999999999998642 2333445545544 4566654 23 7765543
Q ss_pred ----------cccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 019238 56 ----------NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98 (344)
Q Consensus 56 ----------~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~ 98 (344)
.++.|+.+++++++|+++||+|++|||||+ +|+.+.. +||+
T Consensus 100 ~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~ 150 (217)
T PRK11780 100 NLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVK 150 (217)
T ss_pred hhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcE
Confidence 345699999999999999999999999996 9998732 6665
No 50
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.16 E-value=2.4e-10 Score=99.52 Aligned_cols=95 Identities=25% Similarity=0.346 Sum_probs=73.6
Q ss_pred CeEEEEeCCCcc-hhHHHHHHHHHH-hcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH--
Q 019238 161 PQILVPIANGSE-EMEAVIIIDILR-RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-- 236 (344)
Q Consensus 161 ~~v~ill~~g~~-~~e~~~~~~~l~-~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~-- 236 (344)
|||+|+.++|.. +.|+ .+.|+ .+|+++..+..+. .+. ++||+|+||||....+
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~------------------~~l--~~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKE------------------TDL--DGVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCc------------------CCC--CCCCEEEECCCCchhhhh
Confidence 589999999987 5554 67777 7898887765532 122 5799999999954222
Q ss_pred ---hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCe
Q 019238 237 ---AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 279 (344)
Q Consensus 237 ---~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~ 279 (344)
....++.+.+||+++++++++|++||+|.. +|+++|||+|+-
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~q-lLa~~GLL~g~l 102 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQ-ILTEAGLLPGAL 102 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCCCCeE
Confidence 223457899999999999999999999975 599999999853
No 51
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.11 E-value=3.5e-10 Score=99.93 Aligned_cols=128 Identities=20% Similarity=0.146 Sum_probs=88.2
Q ss_pred EEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh--
Q 019238 163 ILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA-- 239 (344)
Q Consensus 163 v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~-- 239 (344)
|+|+.+||. .+.| ..+.|+++|+++.+++.+. .+.. .....+||.|++|||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~--~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHND--LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccC--Cccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 589999998 5555 6788888999998887754 1111 11226799999999964222221
Q ss_pred ---cCHH-HHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhcc-CCcCCCcEEEeCCeEeCC
Q 019238 240 ---KSKK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSN-QSEIENRVVVDGNLVTSR 310 (344)
Q Consensus 240 ---~~~~-l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~-~~~~~~~~v~dg~liT~~ 310 (344)
.... +.++|+++.+++++|++||.|..+ |+++|+|.|+. +.++........ ..+.+..++.|++++|+.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Ql-L~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQI-LVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHHH-HHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence 1222 889999999999999999999866 99999999976 555543332221 123444566677888875
No 52
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.02 E-value=2.1e-09 Score=95.64 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 160 ~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
++||+|+.++|+. +.| +.+.|+++|+++.+++.... .+ ...+. .+||+|++|||....+.+
T Consensus 3 ~~kvaVl~~pG~n~d~e---~~~Al~~aG~~v~~v~~~~~------------~~-~~~~l--~~~DgLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDE---TVKAFRRLGVEPEYVHINDL------------AA-ERKSV--SDYDCLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCHHH---HHHHHHHCCCcEEEEeeccc------------cc-cccch--hhCCEEEECCCCCccccc
Confidence 5799999999996 544 46889899999988876531 00 11122 679999999995322222
Q ss_pred hc--------CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCC
Q 019238 239 AK--------SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277 (344)
Q Consensus 239 ~~--------~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g 277 (344)
.. .+.+.+.|+++.+++|+|.+||+|..+ |+++|+|.|
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Ql-La~~GlLpg 110 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQV-LVELGLLPG 110 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHH-HHHCCCCCC
Confidence 11 123458899999999999999999866 999999987
No 53
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.01 E-value=2.7e-09 Score=106.50 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=87.9
Q ss_pred eeehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc--C------CCchhhhcccCChHHHHHHHHHhhC
Q 019238 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A------CGMPGATNLKESEVLESIVKKQASD 73 (344)
Q Consensus 2 E~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~--~------gG~~~~~~~~~~~~~~~~l~~~~~~ 73 (344)
|+..+.++|+++|.++.++|+++ .+|+++.|..+.+|.++++.+. + ||......+..++.++.||++++++
T Consensus 612 ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykH 690 (752)
T PRK11249 612 DLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKH 690 (752)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence 56789999999999999999996 5999999999999999987753 2 7755677788899999999999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCCCCCCCEEcCC
Q 019238 74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTR 106 (344)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~ 106 (344)
+|+|+++|+|+ ++|+++||.+ ..|..++++.
T Consensus 691 gK~IAAiCaG~-~LLaaAGL~~-~~~~g~~~~~ 721 (752)
T PRK11249 691 LKPIALAGDAR-KLKAALKLPD-QGEEGLVEAD 721 (752)
T ss_pred CCEEEEeCccH-HHHHhcCCCC-CCCCeEEecC
Confidence 99999999999 5999999954 2346777776
No 54
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.92 E-value=9.5e-09 Score=90.14 Aligned_cols=94 Identities=24% Similarity=0.371 Sum_probs=72.1
Q ss_pred CeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH---
Q 019238 161 PQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--- 236 (344)
Q Consensus 161 ~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~--- 236 (344)
|||+|+.++|.. +.|+ .+.|+.+|+++.++..... .. +++|+|++|||....+
T Consensus 1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence 589999999885 5665 4788889988887754321 12 5799999999953222
Q ss_pred --hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCC
Q 019238 237 --AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278 (344)
Q Consensus 237 --~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~ 278 (344)
.+..+..++++|+++.+++++|.+||+|..+ |+++|+|.|.
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Ql-La~~GlL~G~ 100 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQI-LVEAGLLPGA 100 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHHHHH-HHHcCCCCCc
Confidence 1234567889999999999999999999754 9999999984
No 55
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.82 E-value=4e-08 Score=74.86 Aligned_cols=91 Identities=30% Similarity=0.472 Sum_probs=74.9
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK 242 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~ 242 (344)
|++++++++...++..+.+.|+.+++++++++...+ ...+ .....+||+|++|||.........++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence 478899999999999999999999999999999885 4333 12337899999999865443333478
Q ss_pred HHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 243 KLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 243 ~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
.++++++++..++++++++|.|+.+
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~ 91 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQL 91 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHh
Confidence 9999999999999999999999754
No 56
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.68 E-value=1.1e-07 Score=81.81 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=73.0
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA 239 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~ 239 (344)
|||+|++.+++....+..+.+.|+..|+++++...+. .++. .+||+|++|||.... ..+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~-----------------~~~l--~~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR-----------------PGDL--PDCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC-----------------hHHh--ccCCEEEECCCcHHHHHHHH
Confidence 5899999999999999999999999998877666542 1233 579999999995432 1233
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+..+.++|+++.+++++|.+||.|..+ |+.+
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Ql-l~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLIL-LAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHHH-HHhh
Confidence 4556899999999999999999999866 7775
No 57
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.8e-07 Score=79.51 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=72.4
Q ss_pred CCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238 160 SPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (344)
Q Consensus 160 ~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~- 237 (344)
++||+|+.+||. ++.|.. ..|+++|++...+..+.. .+. .+||+|++|||+.--+-
T Consensus 2 ~~kvaVi~fpGtN~d~d~~---~A~~~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL 59 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMA---AAFERAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL 59 (231)
T ss_pred CceEEEEEcCCcCchHHHH---HHHHHcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence 589999999998 666654 455578888776665442 111 17999999999742222
Q ss_pred ----hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCC
Q 019238 238 ----FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 277 (344)
Q Consensus 238 ----l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g 277 (344)
+..-..+++-++++.++++++.+||+|-.+ |.++|||.|
T Consensus 60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQi-L~e~gLlPG 102 (231)
T COG0047 60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQI-LSEAGLLPG 102 (231)
T ss_pred CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHH-HHHcCcCCc
Confidence 233367899999999999999999999877 889999999
No 58
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.59 E-value=1.8e-07 Score=77.96 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF 238 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l 238 (344)
.+||+||..+|.... -...|++.|+++.++.. .++. .+||.|++|||.... ..+
T Consensus 2 ~~~igVLalqG~~~E----h~~al~~lG~~v~~v~~-------------------~~~l--~~~D~LILPGG~~t~~~~l 56 (179)
T PRK13526 2 TQKVGVLAIQGGYQK----HADMFKSLGVEVKLVKF-------------------NNDF--DSIDRLVIPGGESTTLLNL 56 (179)
T ss_pred CcEEEEEECCccHHH----HHHHHHHcCCcEEEECC-------------------HHHH--hCCCEEEECCChHHHHHHH
Confidence 378999999987654 55677778776544331 2333 679999999994322 145
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.++..+.+.|+++.+ +|+|.+||.|+.+ |++
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~ql-L~~ 87 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSII-LSK 87 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHHH-HHc
Confidence 566679999999885 7899999999755 887
No 59
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.58 E-value=2.9e-07 Score=66.86 Aligned_cols=90 Identities=30% Similarity=0.462 Sum_probs=71.4
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK 242 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~ 242 (344)
|+++.++++...++..+.+.+++.++++.+++.... .... .....++|++++|||.........+.
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467888888888889999999999999999998874 3222 12337899999999965433333478
Q ss_pred HHHHHHHHHHhcCCcEEEEcchhh
Q 019238 243 KLVNMLKKQKESNRPYGAICASPA 266 (344)
Q Consensus 243 ~l~~~l~~~~~~~k~I~aic~G~~ 266 (344)
.+++++.+++.++++|+++|.|+.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEecccc
Confidence 999999999999999999999963
No 60
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.48 E-value=4e-07 Score=77.15 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=65.4
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhhhc
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAK 240 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~~ 240 (344)
||+|+..+|.... ..+.|++.|+++.+++.. ++. ++||+|+||||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~l--~~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQL--DEIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCHHHHHHHHH
Confidence 6899999987554 458899999888777542 122 579999999995432 23445
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+..+.++|+++++++++|.++|.|..+ |++.
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~ql-L~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLIM-LAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHHH-HHhh
Confidence 567899999999999999999999765 8876
No 61
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.39 E-value=7.7e-06 Score=65.40 Aligned_cols=162 Identities=21% Similarity=0.316 Sum_probs=101.8
Q ss_pred CCeEEEEe-----CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeee---cccee--------eee-------ccccc
Q 019238 160 SPQILVPI-----ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA---SCQVK--------LVA-------DMLID 216 (344)
Q Consensus 160 ~~~v~ill-----~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~---~~g~~--------v~~-------~~~~~ 216 (344)
+|||++++ |||....|-....-.+.+.|.++..+.++.. ...- -.|-. +.. -..+.
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~ 79 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA 79 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence 47888886 5788888888888889999999999988763 2111 11111 110 02345
Q ss_pred cccCCCccEEEEcCCccchHhh----------hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh-cCCCCCCeeeeC--
Q 019238 217 EAAKLSYDLIVLPGGLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEP-HGLLKGKKATAF-- 283 (344)
Q Consensus 217 ~~~~~~~D~liipGG~~~~~~l----------~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~-aGlL~g~~~T~~-- 283 (344)
..++++||++++|||++....+ .-++.+..+.+.+++.||+++-+|-++.+ |.+ -| .+.+.|..
T Consensus 80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g--~~~~~TIGnD 156 (217)
T COG3155 80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFG--FPLRLTIGND 156 (217)
T ss_pred hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcC--CceeEEecCC
Confidence 5567899999999998755443 34688999999999999999999999866 543 22 23344543
Q ss_pred cCchhhhcc---C--Cc-CCCcEEE-eCCeEeCCCcccHHHHHHHHHHHhcCH
Q 019238 284 PAMCNKLSN---Q--SE-IENRVVV-DGNLVTSRGPGTSMEFALAIVEKFFGR 329 (344)
Q Consensus 284 ~~~~~~~~~---~--~~-~~~~~v~-dg~liT~~g~~~~~~~~~~li~~l~g~ 329 (344)
+.-.+.++. . .. .+..++. +.+++|.- +.-++..|-+.--|-
T Consensus 157 ~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsGI 205 (217)
T COG3155 157 IDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASGI 205 (217)
T ss_pred ccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhhH
Confidence 333444433 1 12 2333333 35677632 344555555555444
No 62
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.38 E-value=1.2e-06 Score=77.75 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=67.4
Q ss_pred CeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh-
Q 019238 161 PQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF- 238 (344)
Q Consensus 161 ~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l- 238 (344)
+||+|+.+||. .+.| ....|+.+|++.+.+..+. .. -.+....+||+|++|||+..-+.+
T Consensus 2 pkV~Vl~~pGtNce~e---~~~A~~~aG~~~~~v~~~d--l~-------------~~~~~l~~~~~lvipGGFS~gD~l~ 63 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERE---TAAAFENAGFEPEIVHIND--LL-------------SGESDLDDFDGLVIPGGFSYGDYLR 63 (259)
T ss_dssp -EEEEEE-TTEEEHHH---HHHHHHCTT-EEEEEECCH--HH-------------TTS--GCC-SEEEE-EE-GGGGTTS
T ss_pred CEEEEEECCCCCCHHH---HHHHHHHcCCCceEEEEEe--cc-------------cccCchhhCcEEEECCccCccccch
Confidence 69999999999 4544 4577888999998876543 00 011123789999999997433322
Q ss_pred ---------hcCHHHHHHHHHHHhc-CCcEEEEcchhhhhhhhcCCCCCC
Q 019238 239 ---------AKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGK 278 (344)
Q Consensus 239 ---------~~~~~l~~~l~~~~~~-~k~I~aic~G~~~lLa~aGlL~g~ 278 (344)
..++.+++.|++|+++ +++|.+||+|-.+ |.++|||.+.
T Consensus 64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQi-L~~~Gllp~~ 112 (259)
T PF13507_consen 64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQI-LVELGLLPGG 112 (259)
T ss_dssp TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHH-HCCCCCSTT-
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHH-HHHhCcCCCc
Confidence 2245678999999998 9999999999766 9999999983
No 63
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.30 E-value=3.3e-06 Score=72.51 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHhhhcCHHHHHHHHHHHh
Q 019238 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKE 253 (344)
Q Consensus 176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~l~~~~~l~~~l~~~~~ 253 (344)
+..-.+.|++.|+++.++++..+ ++. +++|+||+|||... +..+.++..+.+.|+++.+
T Consensus 13 y~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~ 73 (198)
T cd03130 13 YPENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAE 73 (198)
T ss_pred cHHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHH
Confidence 34467888899999988876431 222 35999999999543 3456677789999999999
Q ss_pred cCCcEEEEcchhhhhhhhc
Q 019238 254 SNRPYGAICASPALVLEPH 272 (344)
Q Consensus 254 ~~k~I~aic~G~~~lLa~a 272 (344)
++++|.+||.|.++ |++.
T Consensus 74 ~g~pilgICgG~ql-L~~~ 91 (198)
T cd03130 74 SGGPIYAECGGLMY-LGES 91 (198)
T ss_pred cCCCEEEEcccHHH-HHHH
Confidence 99999999999765 7653
No 64
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.20 E-value=7e-06 Score=69.93 Aligned_cols=86 Identities=22% Similarity=0.240 Sum_probs=63.3
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-Hhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF 238 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l 238 (344)
+|+|+|+...|-...- .+.|+..|.++.+++.. ++. .+||.|++|||.... +.+
T Consensus 1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~ 55 (189)
T PRK13525 1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL 55 (189)
T ss_pred CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence 4789999998765533 46678888887665421 223 579999999995322 233
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+..+.++++++++++++|.+||.|..+ |+.
T Consensus 56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Ql-L~~ 87 (189)
T PRK13525 56 LRDFGLLEPLREFIASGLPVFGTCAGMIL-LAK 87 (189)
T ss_pred HHhccHHHHHHHHHHCCCeEEEECHHHHH-HHh
Confidence 45566789999999999999999999866 776
No 65
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.17 E-value=5.2e-06 Score=68.24 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=61.8
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcC-CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc-cchHhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAK-ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL-GGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~-~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~-~~~~~l 238 (344)
|||+||.+.|-....+ +.+++++ .++. .-+..++. ++.|+||||||- .....+
T Consensus 1 m~IGVLalQG~v~EH~----~~l~~~~~~e~~-------------------~Vk~~~dL--~~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVEEHL----EALEKAGGAEVV-------------------EVKRPEDL--EGVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHHHHH----HHHHhhcCCceE-------------------EEcCHHHh--ccCcEEEecCccHHHHHHH
Confidence 6899999998766554 4455553 2221 11233555 678999999994 345567
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.+...+.+-|+++..+|+|+.+.|+|. ++||+
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak 87 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK 87 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence 777889999999999999999999994 66885
No 66
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.08 E-value=1.6e-05 Score=70.05 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=63.6
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF 238 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~l 238 (344)
+|||+||..+|....- .+.|++.|+++.+++.. +++ .++|.||+|||... +..+
T Consensus 1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence 4799999999865533 57788888776554431 333 57899999998642 3344
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.....+.+.|+++.+++++|.++|.|..+ |++.
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~Gmql-La~~ 88 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAGLIF-LAER 88 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChhHHH-HHHH
Confidence 44446889999998999999999999654 7654
No 67
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.08 E-value=1.8e-05 Score=68.12 Aligned_cols=87 Identities=28% Similarity=0.276 Sum_probs=63.9
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
|||+|+=+.+-+. ....+.|+..|+++.+++. .++. .+||+|++|||......+..
T Consensus 1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence 5777777764443 5568889999998877631 1233 57999999996322333445
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+.+.++|+++.+++++|.+||.|..+ |+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q~-l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQL-LFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHHH-Hhhh
Confidence 567899999999999999999999876 8864
No 68
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.06 E-value=1.6e-05 Score=69.33 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=52.5
Q ss_pred HHHHH-hCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-----cccCChHHHHHHHHHhhCCCEE
Q 019238 7 IDVLR-RSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY 77 (344)
Q Consensus 7 ~~~l~-~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i 77 (344)
++.|+ ++|+++.++..+. . .+++.+-. ||....+ ....++.+.+||++++++|+++
T Consensus 18 ~~a~~~~~G~~~~~v~~~~-~--------------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~i 82 (219)
T PRK03619 18 ARALRDLLGAEPEYVWHKE-T--------------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPV 82 (219)
T ss_pred HHHHHhcCCCeEEEEecCc-C--------------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEE
Confidence 55677 7899888887642 1 12222211 5432211 2234578999999999999999
Q ss_pred EEEchhHHHHHHHcCCCCCC
Q 019238 78 AAICVFLAVALGSWGLLKGL 97 (344)
Q Consensus 78 ~aiC~g~~~~La~aGll~g~ 97 (344)
++||.|+ ++|+++|||+|+
T Consensus 83 lgIC~G~-qlLa~~GLL~g~ 101 (219)
T PRK03619 83 LGICNGF-QILTEAGLLPGA 101 (219)
T ss_pred EEECHHH-HHHHHcCCCCCe
Confidence 9999999 599999999753
No 69
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.05 E-value=2.2e-05 Score=67.20 Aligned_cols=86 Identities=22% Similarity=0.228 Sum_probs=61.5
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc--
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK-- 240 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~-- 240 (344)
|+++.|+.. ..+..+...+...|++++++++..+ +.++|+|++|||......+..
T Consensus 1 ~~~~~y~~~--gN~~~l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~~ 57 (194)
T cd01750 1 IAVIRYPDI--SNFTDLDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWLR 57 (194)
T ss_pred CEeecCCCc--cCHHHHHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHHH
Confidence 356667643 3335566777788888888876541 257899999999633333322
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+..+.+.|+++.+++++|.+||.|..+ |++.
T Consensus 58 ~~~~~~~i~~~~~~g~pvlgiC~G~ql-L~~~ 88 (194)
T cd01750 58 KRGLAEAIKNYARAGGPVLGICGGYQM-LGKY 88 (194)
T ss_pred HcCHHHHHHHHHHCCCcEEEECHHHHH-hhhh
Confidence 456889999999999999999999766 7654
No 70
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.04 E-value=2.5e-05 Score=75.65 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~ 237 (344)
..+|+|.-.+=|+. -+..-++.|+..|.++.++++-.. ++. ++||+|++|||... ...
T Consensus 245 ~~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~ 304 (451)
T PRK01077 245 GVRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE 304 (451)
T ss_pred CceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence 36999998884433 333345778888888888776321 122 57899999999643 345
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
+..+..+.+.|+++.++|++|.++|.|..+ |++
T Consensus 305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~-L~~ 337 (451)
T PRK01077 305 LAANTSMRASIRAAAAAGKPIYAECGGLMY-LGE 337 (451)
T ss_pred HhhCchhHHHHHHHHHcCCCEEEEcHHHHH-HHh
Confidence 677888999999999999999999999754 764
No 71
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.04 E-value=2.1e-05 Score=69.55 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=56.5
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhccc-----CChH-HHHHHHHHhhCCCE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLK-----ESEV-LESIVKKQASDGRL 76 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~-----~~~~-~~~~l~~~~~~g~~ 76 (344)
.++.|+++|+++.+++.+. .+.. ...+++.+-. ||+...+.++ .... +.++|+++.+++++
T Consensus 15 ~~~al~~aG~~v~~v~~~~--~~~~--------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~p 84 (238)
T cd01740 15 MAYAFELAGFEAEDVWHND--LLAG--------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGL 84 (238)
T ss_pred HHHHHHHcCCCEEEEeccC--Cccc--------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCe
Confidence 4677899999999998863 2221 1123333221 5533222221 1222 88999999999999
Q ss_pred EEEEchhHHHHHHHcCCCCCCC
Q 019238 77 YAAICVFLAVALGSWGLLKGLK 98 (344)
Q Consensus 77 i~aiC~g~~~~La~aGll~g~~ 98 (344)
+.+||.|+. +|+++|+|.|+.
T Consensus 85 vlGIC~G~Q-lL~~~gll~g~~ 105 (238)
T cd01740 85 VLGICNGFQ-ILVELGLLPGAL 105 (238)
T ss_pred EEEECcHHH-HHHHcCCCcccc
Confidence 999999995 999999998765
No 72
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.98 E-value=6e-05 Score=66.48 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=66.3
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-hh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA 239 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-l~ 239 (344)
|||.|+....+...+.. .+.++..|+++++.....+.+ + + .+. .+||+|||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~~--------~-p----~~~--~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGEA--------L-P----ENA--DGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCCC--------C-C----CCc--cccCEEEECCCCCChhhccc
Confidence 57888888888777654 567788898887765543211 1 1 122 67999999999543221 11
Q ss_pred cC-----HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 240 KS-----KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 240 ~~-----~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+. ....+||+++++++++|.+||.|..+ |+.+
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQL-IGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHHH-HHHH
Confidence 12 35689999999999999999999887 7654
No 73
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.91 E-value=9.1e-05 Score=65.23 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=66.0
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~- 237 (344)
+|++|.|+-.... ..+..+.+.|+..|++++++....+ . . ...+. .+||+|||+||..+...
T Consensus 1 ~m~~ilviqh~~~--e~~g~i~~~L~~~g~~~~v~~~~~~-~--------~----~~~~~--~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 1 MMKTAVAIRHVAF--EDLGSFEQVLGARGYRVRYVDVGVD-D--------L----ETLDA--LEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred CCceEEEEECCCC--CCChHHHHHHHHCCCeEEEEecCCC-c--------c----CCCCc--cCCCEEEECCCCCCCCCC
Confidence 4677766655443 4455578999999999988776543 1 0 01122 57999999998533222
Q ss_pred --hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 --FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 --l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..--..+.++|+++.+.+++|.+||-|..+ |+.+
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a 99 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQL-IARA 99 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHH-HHHH
Confidence 112246789999999999999999999877 6654
No 74
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.89 E-value=3.6e-05 Score=65.21 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=61.6
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-HhhhcC
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAKS 241 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~~l~~~ 241 (344)
|+|++.+|...... +.|++.|+++..++... +. .++|.|++|||.... .....+
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence 57888887765333 88899998888776521 12 578999999995322 223345
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 242 KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 242 ~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..+.++|+++.++++++.++|.|..+ |+.+
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~ql-L~~~ 85 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLIL-LAKE 85 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHHH-HHHH
Confidence 56789999999999999999999765 7654
No 75
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.74 E-value=0.00012 Score=77.72 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeecccc-ccccCCCccEEEEcCCccchH
Q 019238 159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~D~liipGG~~~~~ 236 (344)
.++||+|+.+||. ++.|.. ..|.++|+++..+.... ..... + ...-..+ .++ .+|++|++|||+..-+
T Consensus 976 ~kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~d--l~~~~--i-~~s~~~~~~~l--~~~~~l~~pGGFSyGD 1045 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRN--LNEEA--L-VESVETMVDEI--DKSQILMLPGGFSAGD 1045 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEec--Ccccc--c-ccchhhhhccc--ccCcEEEEcCccCccc
Confidence 4689999999998 566644 45556998887776543 00000 0 0000011 223 7899999999974222
Q ss_pred ----------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCC
Q 019238 237 ----------AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 278 (344)
Q Consensus 237 ----------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~ 278 (344)
.+..++.+.+-+++|+++++++.+||+|-.+ |.+.|||.+.
T Consensus 1046 ~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~-L~~lGLlP~~ 1096 (1239)
T TIGR01857 1046 EPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQA-LVKSGLLPYG 1096 (1239)
T ss_pred ccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHH-HHHcCCCcCc
Confidence 2355688999999999999999999999665 9999999853
No 76
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.73 E-value=0.00015 Score=61.59 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=62.3
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcC---CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--H
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--Q 236 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~---~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~ 236 (344)
||+|+..+.... .....+.|++.+ ++++.+....+ . ...+. .+||.|+++||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~-------------~~~~~--~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-E-------------LLPDL--DDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-C-------------CCCCc--ccCCEEEECCCCccCCcc
Confidence 466666665443 556677888877 56666555442 1 02233 689999999996433 1
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.....+.+.++|+++.++++++.+||.|..+ |+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~-l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQL-LARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHHH-HHHH
Confidence 1122356899999999999999999999866 6543
No 77
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.65 E-value=0.00092 Score=62.72 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=70.1
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l 238 (344)
.||+|.--.=|+. =+-.-++.|+..|+++.++|+-.+ +++ |++.|+|++|||+... ..|
T Consensus 246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L 306 (451)
T COG1797 246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEEL 306 (451)
T ss_pred ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHH
Confidence 6899665543333 345578999999999999998552 222 3468999999998543 357
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.+++.+++.|++++..|++|-+=|.|-+. |.+
T Consensus 307 ~~n~~~~~~i~~~~~~G~piyaECGGlMY-L~~ 338 (451)
T COG1797 307 SANESMRRAIKAFAAAGKPIYAECGGLMY-LGE 338 (451)
T ss_pred hhCHHHHHHHHHHHHcCCceEEeccccee-ehh
Confidence 88999999999999999999999999544 654
No 78
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.60 E-value=0.00024 Score=61.38 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=58.4
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--hc
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AK 240 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l--~~ 240 (344)
|+|+-+.+ .....+.+.|++.|++++++.. .++. .+||.|||||+....... ..
T Consensus 2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYGM---GNLRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcCC---chHHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 44444442 3346678999999988877431 1233 579999999963212221 12
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+.+.++|+++..++++|.+||.|..+ |+..
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Ql-l~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQL-LFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHHH-hhhc
Confidence 235789999999999999999999876 8875
No 79
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.60 E-value=0.00029 Score=60.95 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc---chH
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQ 236 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~---~~~ 236 (344)
+++|+|+-+..-+. ....+.|++.|+++.+++.. +++ .++|.||+||+-. .+.
T Consensus 1 ~~~v~iid~~~GN~---~sl~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~ 56 (210)
T CHL00188 1 MMKIGIIDYSMGNL---HSVSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK 56 (210)
T ss_pred CcEEEEEEcCCccH---HHHHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence 46899999884333 45677888888888766421 122 4689999999422 112
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+ .+..+.+.|+++.+++++|.+||.|..+ |++.
T Consensus 57 ~l-~~~gl~~~i~~~~~~~~pvlGIClG~Ql-l~~~ 90 (210)
T CHL00188 57 KL-EKKGLITPIKKWIAEGNPFIGICLGLHL-LFET 90 (210)
T ss_pred HH-HHCCHHHHHHHHHHcCCCEEEECHHHHH-Hhhc
Confidence 22 2235667888888999999999999766 7764
No 80
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=97.59 E-value=0.0003 Score=61.77 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=52.1
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhh-----cccCChHHHHHHHHHhhCCCEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY 77 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i 77 (344)
.++.|+++|+++.++.... .. +++.+-. ||....+ .+..++.+.++|+++.++|+++
T Consensus 17 ~~~al~~~G~~~~~i~~~~-~~--------------l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pv 81 (227)
T TIGR01737 17 TVYALRLLGVDAEIVWYED-GS--------------LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPV 81 (227)
T ss_pred HHHHHHHCCCeEEEEecCC-CC--------------CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEE
Confidence 3567888999988886542 11 1222211 5432111 1234567889999999999999
Q ss_pred EEEchhHHHHHHHcCCCCC
Q 019238 78 AAICVFLAVALGSWGLLKG 96 (344)
Q Consensus 78 ~aiC~g~~~~La~aGll~g 96 (344)
.+||.|. .+|+++|+|+|
T Consensus 82 lgIC~G~-QlLa~~GlL~G 99 (227)
T TIGR01737 82 LGICNGF-QILVEAGLLPG 99 (227)
T ss_pred EEECHHH-HHHHHcCCCCC
Confidence 9999999 59999999975
No 81
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.58 E-value=0.0001 Score=61.39 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=39.6
Q ss_pred ccccCCCccEEEEcCCc-cchHhhhcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhhh
Q 019238 216 DEAAKLSYDLIVLPGGL-GGAQAFAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP 271 (344)
Q Consensus 216 ~~~~~~~~D~liipGG~-~~~~~l~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa~ 271 (344)
++. .+.|.||||||- ..+..+.....+.+-|+++.++| +||.+.|+|. ++||+
T Consensus 29 ~dL--~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~ 83 (188)
T PF01174_consen 29 EDL--EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAK 83 (188)
T ss_dssp GGG--TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEE
T ss_pred HHH--ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhh
Confidence 444 568999999993 33455667778999999999998 9999999994 66886
No 82
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.53 E-value=0.00054 Score=73.43 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc---
Q 019238 159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--- 234 (344)
Q Consensus 159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--- 234 (344)
.++||+|+.+||. .+.| ....|..+|++...+..+. ... | .....+|+.|++|||+..
T Consensus 1036 ~~pkVaVl~~pGtN~~~e---~~~Af~~aGf~~~~V~~~d--l~~---~----------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDRE---MAAAFYAAGFEPWDVTMSD--LLN---G----------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCCeEEEEECCCCCCHHH---HHHHHHHcCCceEEEEeee--ccc---c----------cccccceeEEEEcCcCCCccc
Confidence 4689999999998 4555 4456668998887666542 100 0 111267999999999731
Q ss_pred -------hHhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhhhcCCCCCCe
Q 019238 235 -------AQAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLKGKK 279 (344)
Q Consensus 235 -------~~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa~aGlL~g~~ 279 (344)
...+..++.+.+.+++|+ +.++++.+||+|-.+ |.+.|||.|..
T Consensus 1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQi-L~~lgllPg~~ 1149 (1307)
T PLN03206 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQL-MALLGWVPGPQ 1149 (1307)
T ss_pred cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHH-HHHcCCCCCCc
Confidence 123456788999999999 559999999999766 99999998753
No 83
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.48 E-value=0.00062 Score=58.03 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=59.0
Q ss_pred EeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHH
Q 019238 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV 245 (344)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~ 245 (344)
++.|..+..... +.+.|++.|++++++..+.. ..++. .+||.|||.||.+.+. ..+.+.
T Consensus 5 liid~~dsf~~~-i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~~~~~~ 63 (190)
T PRK06895 5 LIINNHDSFTFN-LVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---AYPQLF 63 (190)
T ss_pred EEEeCCCchHHH-HHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---HhhHHH
Confidence 444555554444 89999999999988776432 12333 5689999988865332 234577
Q ss_pred HHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 246 NMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 246 ~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
++|++ +++++||.+||-|..+ |+.+
T Consensus 64 ~~i~~-~~~~~PiLGIClG~Ql-la~~ 88 (190)
T PRK06895 64 AMLER-YHQHKSILGVCLGHQT-LCEF 88 (190)
T ss_pred HHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence 88886 6789999999999877 6654
No 84
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.48 E-value=0.00016 Score=59.76 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=43.0
Q ss_pred cCCCccEEEEcCCccchH--hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 219 AKLSYDLIVLPGGLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 219 ~~~~~D~liipGG~~~~~--~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.++++|+|++|||..... .+.++..+.+.|+++.++|++|.++|.|-.+ |.+.
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~-Lg~~ 58 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQY-LGES 58 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHH-HHHH
Confidence 457899999999975433 3466788999999999999999999999544 7654
No 85
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.45 E-value=0.00091 Score=59.11 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
.++||.|+.-.++.... .+.+.|+..|.+++++.+..+.+ .| ++. .+||.++|.||..+..+.
T Consensus 6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~l--~~~dgvii~Ggp~~~~d~ 68 (239)
T PRK06490 6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP---------LP----DTL--EDHAGAVIFGGPMSANDP 68 (239)
T ss_pred CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC---------CC----Ccc--cccCEEEEECCCCCCCCC
Confidence 36888888766655444 46788999999988876654311 01 233 579999999985433221
Q ss_pred -hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 239 -~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.--..+.+||+++.+.+++|.+||-|..+ |+.+
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Ql-la~a 102 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQM-LARH 102 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHHH-HHHH
Confidence 11234679999999999999999999877 7765
No 86
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=97.43 E-value=0.00052 Score=61.28 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=53.0
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCC--------hHHHHHHHHHhhCC
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKES--------EVLESIVKKQASDG 74 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~--------~~~~~~l~~~~~~g 74 (344)
+++.|+++|+++.+++... .. .....+++.+-. ||+...+.++.. +.+.+.|+++.+++
T Consensus 20 ~~~Al~~aG~~v~~v~~~~--~~--------~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~g 89 (261)
T PRK01175 20 TVKAFRRLGVEPEYVHIND--LA--------AERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEG 89 (261)
T ss_pred HHHHHHHCCCcEEEEeecc--cc--------ccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCC
Confidence 5788899999999998763 10 001112333321 553222222211 33457889999999
Q ss_pred CEEEEEchhHHHHHHHcCCCCC
Q 019238 75 RLYAAICVFLAVALGSWGLLKG 96 (344)
Q Consensus 75 ~~i~aiC~g~~~~La~aGll~g 96 (344)
+++.+||.|.. +|+++|+|-|
T Consensus 90 kpVLGICnG~Q-lLa~~GlLpg 110 (261)
T PRK01175 90 YPIIGICNGFQ-VLVELGLLPG 110 (261)
T ss_pred CeEEEECHHHH-HHHHCCCCCC
Confidence 99999999995 9999999976
No 87
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.43 E-value=0.00077 Score=56.80 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (344)
Q Consensus 178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~ 257 (344)
...+.++..|.++.++..+.. .++....+||.|+++||...+. +.....++++++.++++|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence 357788888888887765531 2222235799999999954332 346778899999999999
Q ss_pred EEEEcchhhhhhhh
Q 019238 258 YGAICASPALVLEP 271 (344)
Q Consensus 258 I~aic~G~~~lLa~ 271 (344)
|.+||.|..+ |+.
T Consensus 72 vlGIC~G~Q~-l~~ 84 (178)
T cd01744 72 IFGICLGHQL-LAL 84 (178)
T ss_pred EEEECHHHHH-HHH
Confidence 9999999877 543
No 88
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.42 E-value=0.00073 Score=72.78 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-
Q 019238 158 DNSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA- 235 (344)
Q Consensus 158 ~~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~- 235 (344)
.+++||+|+.+||. .+.|. ...|..+|++...+..+. - .. ......+|+.|++|||+..-
T Consensus 1053 ~~~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~d--l---------~~----~~~~l~~~~~lv~~GGFSygD 1114 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSD--L---------LA----GRVHLDEFRGLAACGGFSYGD 1114 (1310)
T ss_pred CCCceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEec--c---------cc----CCcchhheeEEEEcCCCCCcc
Confidence 35689999999999 45554 446668898877766543 0 00 01112678999999996311
Q ss_pred ---------HhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhh-hcCCCCCC
Q 019238 236 ---------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLKGK 278 (344)
Q Consensus 236 ---------~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa-~aGlL~g~ 278 (344)
..+..++.+.+.+++|+ +.++++.+||+|-.+ |. ..|||.|.
T Consensus 1115 ~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~-L~~~~gllp~~ 1167 (1310)
T TIGR01735 1115 VLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQM-LSNLLEWIPGT 1167 (1310)
T ss_pred chhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHH-HHHHhCcCCCC
Confidence 22456788999999999 899999999999777 66 99999864
No 89
>PRK05665 amidotransferase; Provisional
Probab=97.41 E-value=0.0014 Score=57.85 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCccEEEEcCCccchHh-hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 221 LSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~-l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+||.+||.||..+... ..--..+.+||++.+++++++.+||-|..+ ||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQl-la~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQL-LALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHH-HHHH
Confidence 57999999999543322 111246789999999999999999999877 7654
No 90
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.38 E-value=0.0009 Score=64.82 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=65.4
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l 238 (344)
.+|+|.-.+-|+..= ..=++.|++.|+++..+++-.+ ++. +++|+|++|||.... ..+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l 304 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL 304 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence 689988887554421 3345667778888888776432 122 478999999997432 235
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+..+.+.|+++.++|.+|.++|.|-. +|++
T Consensus 305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~ 336 (449)
T TIGR00379 305 SQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQ 336 (449)
T ss_pred HhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence 5678899999999999999999999954 4764
No 91
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.37 E-value=0.001 Score=71.83 Aligned_cols=100 Identities=12% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--
Q 019238 159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-- 235 (344)
Q Consensus 159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-- 235 (344)
.++||+|+.+||. .+.| ....|+.+|+++..+..+. -.. | . ..+ .+|+.|++|||+..-
T Consensus 1034 ~~pkv~il~~pG~N~~~e---~~~Af~~aG~~~~~v~~~d--l~~---~-----~---~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVE---MAAAFDRAGFDAIDVHMSD--LLA---G-----R---VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred CCCeEEEEECCCCCCHHH---HHHHHHHcCCCeEEEEeec--CcC---C-----C---CCh--hhCcEEEECCccCCccc
Confidence 4689999999998 4555 4456678998887766543 000 0 0 123 789999999996321
Q ss_pred --------HhhhcCHHHHHHHHHHH-hcCCcEEEEcchhhhhhhhcC-CCCC
Q 019238 236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHG-LLKG 277 (344)
Q Consensus 236 --------~~l~~~~~l~~~l~~~~-~~~k~I~aic~G~~~lLa~aG-lL~g 277 (344)
..+..|+.+.+.+++|+ ++++++.+||+|-.+ |.+.| ++.+
T Consensus 1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~-L~~lg~l~p~ 1146 (1290)
T PRK05297 1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQM-MSNLKEIIPG 1146 (1290)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHH-HHHhCCccCC
Confidence 23456788999999987 789999999999766 99997 7655
No 92
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.34 E-value=0.0029 Score=67.99 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc---
Q 019238 159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--- 234 (344)
Q Consensus 159 ~~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--- 234 (344)
.++||+|+.++|.. +.| ....|..+|+++..+..+. - ..... . .+|+.|+++||++.
T Consensus 928 ~~p~VaIl~~pG~N~~~e---~~~Af~~aGf~~~~v~~~d--l---------~~~~~---l--~~f~glv~~Ggfsy~D~ 988 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHG---LLAALTNAGFDPRIVSITE--L---------KKTDF---L--DTFSGLIIGGASGTLDS 988 (1202)
T ss_pred CCCeEEEEeCCCCCCHHH---HHHHHHHcCCceEEEEecc--C---------CCCCc---h--hheEEEEEcCcCCCCcc
Confidence 36799999999994 444 4566777999988777654 1 00111 1 47899999998742
Q ss_pred -------hHhhhcCHHHHHHHHHHH-hcCCcEEEEcc-hhhhhhhhcCCCCC
Q 019238 235 -------AQAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLKG 277 (344)
Q Consensus 235 -------~~~l~~~~~l~~~l~~~~-~~~k~I~aic~-G~~~lLa~aGlL~g 277 (344)
...+..++.+.+.+++|+ +.++++.+||+ |-.+ |.+.|+|..
T Consensus 989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~-L~~lg~l~~ 1039 (1202)
T TIGR01739 989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQL-LLALNIVGY 1039 (1202)
T ss_pred chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHH-HHHcCCCcC
Confidence 123456889999999999 56999999999 9766 999999853
No 93
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.34 E-value=0.00099 Score=53.87 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHh
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA 237 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~ 237 (344)
.+.-|++|...|.....+..+-.-+....|.+.+ .+.+-.+-.+. .+.|+||||||-.. +..
T Consensus 10 tn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~--aq~DaLIIPGGEST~msl 72 (226)
T KOG3210|consen 10 TNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDL--AQCDALIIPGGESTAMSL 72 (226)
T ss_pred cceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHH--hhCCEEEecCCchhHHHH
Confidence 3567999999988776665544443333333321 22333344555 78999999999533 334
Q ss_pred hhcCHHHHHHHHHHHhcC-CcEEEEcchhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~-k~I~aic~G~~~lLa~ 271 (344)
+.+...+.+-|.++..++ +++-+.|+|. ++|.+
T Consensus 73 ia~~tgL~d~L~~fVhn~~k~~WGTCAGm-I~LS~ 106 (226)
T KOG3210|consen 73 IAERTGLYDDLYAFVHNPSKVTWGTCAGM-IYLSQ 106 (226)
T ss_pred HHhhhhhHHHHHHHhcCCCccceeechhh-hhhhh
Confidence 455556889999998877 9999999995 54654
No 94
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.30 E-value=0.0015 Score=56.48 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-- 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-- 237 (344)
+|||+|+=|..-+..+ ....|++.|+++.+.-.. ..++. .++|.|||||+......
T Consensus 1 ~~~~~iid~g~gn~~s---~~~al~~~g~~~~v~~~~-----------------~~~~l--~~~d~lIlpG~~~~~~~~~ 58 (209)
T PRK13146 1 MMTVAIIDYGSGNLRS---AAKALERAGAGADVVVTA-----------------DPDAV--AAADRVVLPGVGAFADCMR 58 (209)
T ss_pred CCeEEEEECCCChHHH---HHHHHHHcCCCccEEEEC-----------------CHHHh--cCCCEEEECCCCcHHHHHH
Confidence 4789988887555544 457777888743111111 12444 68999999997332221
Q ss_pred -hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC
Q 019238 238 -FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (344)
Q Consensus 238 -l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG 273 (344)
+........+++..++.+++|.+||.|..+ |+.++
T Consensus 59 ~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~-l~~~~ 94 (209)
T PRK13146 59 GLRAVGLGEAVIEAVLAAGRPFLGICVGMQL-LFERG 94 (209)
T ss_pred HHHHCCcHHHHHHHHHhCCCcEEEECHHHHH-Hhhcc
Confidence 222222234455555789999999999765 88873
No 95
>PHA03366 FGAM-synthase; Provisional
Probab=97.28 E-value=0.0017 Score=70.18 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-
Q 019238 158 DNSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA- 235 (344)
Q Consensus 158 ~~~~~v~ill~~g~~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~- 235 (344)
...+||+|+.++|.. +.| +...|..+|+++..+..+. - ... .. + .+|+.|++|||+...
T Consensus 1026 ~~~prVaIl~~pG~N~~~e---~~~Af~~aGf~~~~v~~~d--L---------~~~-~~--l--~~f~glv~~GGFS~gD 1086 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGPHA---LLAAFTNAGFDPYPVSIEE--L---------KDG-TF--L--DEFSGLVIGGSSGAED 1086 (1304)
T ss_pred CCCCeEEEEECCCCCCHHH---HHHHHHHcCCceEEEEeec--C---------CCC-Cc--c--ccceEEEEcCCCCCcc
Confidence 346899999999994 444 4566777999988777643 0 001 11 3 678999999997422
Q ss_pred ---------HhhhcCHHHHHHHHHHH-hcCCcEEEEcc-hhhhhhhhcCCCC
Q 019238 236 ---------QAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLK 276 (344)
Q Consensus 236 ---------~~l~~~~~l~~~l~~~~-~~~k~I~aic~-G~~~lLa~aGlL~ 276 (344)
..+..|+.+.+.+++|+ +.++++.+||+ |-.+ |.+.|+|.
T Consensus 1087 ~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~-L~~lgll~ 1137 (1304)
T PHA03366 1087 SYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQI-LFALKAVG 1137 (1304)
T ss_pred cccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHH-HHHcCCcc
Confidence 23457889999999999 56999999999 9765 99999994
No 96
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.21 E-value=0.00088 Score=57.49 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=52.0
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
.+.|+++|+++.++++..+. .+.+++.. ||.+. +..+.++..+.+.|+++.++|+++.+||
T Consensus 17 ~~~l~~~G~~v~~~s~~~~~--------------~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgIC 82 (198)
T cd03130 17 LELLEAAGAELVPFSPLKDE--------------ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAEC 82 (198)
T ss_pred HHHHHHCCCEEEEECCCCCC--------------CCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEc
Confidence 46688999999999875211 11121111 65433 4567677889999999999999999999
Q ss_pred hhHHHHHHHcCC
Q 019238 82 VFLAVALGSWGL 93 (344)
Q Consensus 82 ~g~~~~La~aGl 93 (344)
.|.+ +|++...
T Consensus 83 gG~q-lL~~~~~ 93 (198)
T cd03130 83 GGLM-YLGESLD 93 (198)
T ss_pred ccHH-HHHHHhh
Confidence 9996 8887665
No 97
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.14 E-value=0.0017 Score=48.76 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=61.4
Q ss_pred eehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEE
Q 019238 3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA 79 (344)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a 79 (344)
+..+.+.|+++++++++++..+. .... .....+.+.. ||.........++.+++|++++.++++++.+
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~--------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 84 (115)
T cd01653 14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILG 84 (115)
T ss_pred hHHHHHHHHHCCCeEEEEcCCCC-ceec--------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 45688899999999999999963 4443 1111222211 4433333222479999999999999999999
Q ss_pred EchhHHHHHHHcCCCCCCCCCCEEcCCCCCcHHH
Q 019238 80 ICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPME 113 (344)
Q Consensus 80 iC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~ 113 (344)
+|.|+ ++| ++|.++..+..+
T Consensus 85 ~c~g~-~~l-------------~~~~~~~~~~~~ 104 (115)
T cd01653 85 ICLGA-QLL-------------VLGVQFHPEAID 104 (115)
T ss_pred ECchh-HhH-------------eeeccCChhhhh
Confidence 99999 577 677777766543
No 98
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.003 Score=53.24 Aligned_cols=86 Identities=26% Similarity=0.398 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC-Cc--cchH
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GL--GGAQ 236 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG-G~--~~~~ 236 (344)
+++|+|+=|.-- .+..+...|+++|+++.+.+. .+++ ...|.||+|| |. ..+.
T Consensus 1 m~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence 467888776543 445567778888877654222 2344 5789999999 42 1233
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.+.+ ..+.+.|++....++|+.+||-|..+++.
T Consensus 57 ~L~~-~gl~~~i~~~~~~~kP~LGIClGMQlLfe 89 (204)
T COG0118 57 NLRE-RGLIEAIKEAVESGKPFLGICLGMQLLFE 89 (204)
T ss_pred HHHh-cchHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence 4433 37899999999999999999999887443
No 99
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.06 E-value=0.0032 Score=55.64 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=58.4
Q ss_pred CCeEEEEeCCCcch---hHHHHHHHH----HHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238 160 SPQILVPIANGSEE---MEAVIIIDI----LRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 160 ~~~v~ill~~g~~~---~e~~~~~~~----l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
|+||+||..+.-.+ .......+. |...+.+++++.+..+. .+.+. .+||.|||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~p~~--~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGE--------------PLPAP--DDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCC--------------CCCCh--hhcCEEEEeCCC
Confidence 46688886653321 112223333 33456676666554431 12233 679999999985
Q ss_pred cchHh-hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 233 GGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 233 ~~~~~-l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..... ..--..+.+||++..+++++|.+||-|..+ |+.+
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Ql-la~a 104 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQL-LAHA 104 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHH-HHHH
Confidence 33211 111245789999999999999999999877 6643
No 100
>PRK00784 cobyric acid synthase; Provisional
Probab=97.04 E-value=0.0019 Score=63.34 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=62.0
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-- 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~-- 237 (344)
.||+|+-+|...-. .=++.|+. .|+++.++++.. +. +++|.|++|||......
T Consensus 252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~~ 307 (488)
T PRK00784 252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADLA 307 (488)
T ss_pred eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHHH
Confidence 58999997733222 34566776 788887776522 22 46899999999643322
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
+..+..+.+.|+++.++|++|.++|.|..+ |++
T Consensus 308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~~-L~~ 340 (488)
T PRK00784 308 WLRESGWDEAIRAHARRGGPVLGICGGYQM-LGR 340 (488)
T ss_pred HHHHcCHHHHHHHHHHcCCeEEEECHHHHH-Hhh
Confidence 335666899999999999999999999654 765
No 101
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.96 E-value=0.0035 Score=53.29 Aligned_cols=87 Identities=10% Similarity=0.169 Sum_probs=60.5
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|+++..... +.+.|+..|+++.++..+.. +++++...+||.||+-||.+.+.. ....
T Consensus 2 il~idn~Dsft~n-l~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFTWN-LYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS 62 (187)
T ss_pred EEEEECCCccHHH-HHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence 5666777666644 67888888988887766531 233333347899999999765543 3445
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.++++. +..++||.+||-|..+ |+.+
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q~-la~a 88 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQA-MAQA 88 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHHH-HHHH
Confidence 667776 5678999999999877 6654
No 102
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=96.93 E-value=0.0032 Score=53.49 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhc
Q 019238 175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKES 254 (344)
Q Consensus 175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~ 254 (344)
-...+.+.|++.|++++++..+.. .++....++|.|++|||..... +.....++++..+.
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~~----~~~~~~~i~~~~~~ 69 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSVY----AENAPRADEKIFEL 69 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCcC----cCCchHHHHHHHhC
Confidence 345567888888988877765431 2333223467999999954321 22346788988999
Q ss_pred CCcEEEEcchhhhhhhhc
Q 019238 255 NRPYGAICASPALVLEPH 272 (344)
Q Consensus 255 ~k~I~aic~G~~~lLa~a 272 (344)
++||.+||-|..+ |+.+
T Consensus 70 ~~PilGIC~G~Ql-l~~~ 86 (188)
T TIGR00888 70 GVPVLGICYGMQL-MAKQ 86 (188)
T ss_pred CCCEEEECHHHHH-HHHh
Confidence 9999999999877 6654
No 103
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=96.88 E-value=0.0033 Score=53.62 Aligned_cols=87 Identities=9% Similarity=0.166 Sum_probs=59.4
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|+.+... ..+.+.|++.|++++++..+.. .++++...++|.||+-||...+.. ....
T Consensus 2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~ 62 (191)
T PRK06774 2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS 62 (191)
T ss_pred EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence 45556665554 3467888889999988776531 234443346899999999655433 3345
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..+++. +++++||.+||-|..+ |+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIC~G~Ql-la~~ 88 (191)
T PRK06774 63 LAVIRH-FADKLPILGVCLGHQA-LGQA 88 (191)
T ss_pred hHHHHH-hcCCCCEEEECHHHHH-HHHH
Confidence 566665 5678999999999887 6654
No 104
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.87 E-value=0.0018 Score=55.60 Aligned_cols=76 Identities=29% Similarity=0.397 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--hhcCHHHHHHHHHHH
Q 019238 175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQK 252 (344)
Q Consensus 175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--l~~~~~l~~~l~~~~ 252 (344)
.+..+.+.|++.|++++++... ++. .+||.|++||+...... ....+.+.++|+++.
T Consensus 10 ~~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~ 68 (198)
T cd01748 10 NLRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAI 68 (198)
T ss_pred hHHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHH
Confidence 3455678899999888776521 123 57899999996321111 123345789999999
Q ss_pred hcCCcEEEEcchhhhhhhhc
Q 019238 253 ESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 253 ~~~k~I~aic~G~~~lLa~a 272 (344)
+++++|.++|.|..+ |+.+
T Consensus 69 ~~~~pilGiC~G~q~-l~~~ 87 (198)
T cd01748 69 ASGKPFLGICLGMQL-LFES 87 (198)
T ss_pred HCCCcEEEECHHHHH-hccc
Confidence 999999999999766 8876
No 105
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=96.87 E-value=0.005 Score=53.50 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k 256 (344)
....+.|+..|+++.++..+.. .. ++ ..+. ..+||.|||.||...+. +....++|++++.++++
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT 77 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence 3567888999999988876531 00 11 1111 24799999999965433 33456789999999999
Q ss_pred cEEEEcchhhhhhhh
Q 019238 257 PYGAICASPALVLEP 271 (344)
Q Consensus 257 ~I~aic~G~~~lLa~ 271 (344)
||.+||-|..+ |+.
T Consensus 78 PiLGIC~G~Ql-la~ 91 (214)
T PRK07765 78 PLLGVCLGHQA-IGV 91 (214)
T ss_pred CEEEEccCHHH-HHH
Confidence 99999999877 543
No 106
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.86 E-value=0.0048 Score=52.84 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=49.8
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-- 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l-- 238 (344)
|+|+|+=|..-.... +...|++.|+++.++... ++. .++|.||+||.-......
T Consensus 1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~~~~~~~ 56 (196)
T PRK13170 1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTAQAAMDQ 56 (196)
T ss_pred CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCchHHHHHH
Confidence 466666554333333 455778888777666321 233 467999999942211111
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.....+.+.|++ .++||.+||.|..+ |+.+
T Consensus 57 l~~~~l~~~i~~---~~~PilGIClG~Ql-l~~~ 86 (196)
T PRK13170 57 LRERELIDLIKA---CTQPVLGICLGMQL-LGER 86 (196)
T ss_pred HHHcChHHHHHH---cCCCEEEECHHHHH-Hhhh
Confidence 112234555554 47999999999766 7765
No 107
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.83 E-value=0.007 Score=52.50 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=64.2
Q ss_pred CCeEEEEeCCCcchhH-HHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--h
Q 019238 160 SPQILVPIANGSEEME-AVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--A 235 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~ 235 (344)
.+||+++-.......| +......|++. |+++..+.... .++ ..+.+ .++|+|++|||... .
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~~~-~~~~l--~~ad~I~l~GG~~~~~~ 95 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------TED-PLDAL--LEADVIYVGGGNTFNLL 95 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------ccc-HHHHH--hcCCEEEECCchHHHHH
Confidence 4788888776554334 55678889999 88876554321 011 13444 67899999999421 1
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+ +...+.+.|++.+++|++++++|.|+.+ +..
T Consensus 96 ~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i-~~~ 129 (212)
T cd03146 96 AQW-REHGLDAILKAALERGVVYIGWSAGSNC-WFP 129 (212)
T ss_pred HHH-HHcCHHHHHHHHHHCCCEEEEECHhHHh-hCC
Confidence 222 3336788899989999999999999755 666
No 108
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.81 E-value=0.0089 Score=55.95 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.+||+++=+ |+. ....+.|.+.|+++.++..+. +++++...++|.|+++||.+.+..
T Consensus 177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~-- 233 (360)
T PRK12564 177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA-- 233 (360)
T ss_pred CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence 367766654 443 247788888999887776543 123332236899999999654433
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.+..+++++++.++++||.+||-|..+ |+.
T Consensus 234 -~~~~~~~i~~~~~~~~PilGIClG~Ql-La~ 263 (360)
T PRK12564 234 -LDYAIEMIRELLEKKIPIFGICLGHQL-LAL 263 (360)
T ss_pred -HHHHHHHHHHHHHcCCeEEEECHHHHH-HHH
Confidence 366788999999889999999999877 543
No 109
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=96.77 E-value=0.0064 Score=51.71 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=56.6
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|..+... ....+.|+..|+++.++..+.- .+++....++|.|||.||.+.+.. ....
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~ 62 (188)
T TIGR00566 2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGIS 62 (188)
T ss_pred EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchh
Confidence 34555554444 3367778888888876665431 133333346899999998655433 2334
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.++++++ .+++||.+||-|..+ |+.+
T Consensus 63 ~~~i~~~-~~~~PvLGIC~G~Ql-l~~~ 88 (188)
T TIGR00566 63 LEAIRHF-AGKLPILGVCLGHQA-MGQA 88 (188)
T ss_pred HHHHHHh-ccCCCEEEECHHHHH-HHHH
Confidence 7788877 678999999999877 6543
No 110
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=96.71 E-value=0.0061 Score=43.43 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=50.1
Q ss_pred eehhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEE
Q 019238 3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA 79 (344)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a 79 (344)
+..+.+.+++.++++.+++.... .... .....+.+.- ||.........++...+|++++.++|+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (92)
T cd03128 14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLG 84 (92)
T ss_pred eecHHHHHHhCCCEEEEEeCCCC-cccc--------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 45678889999999999999863 3322 1111111111 4422222222478999999999999999999
Q ss_pred EchhHH
Q 019238 80 ICVFLA 85 (344)
Q Consensus 80 iC~g~~ 85 (344)
+|.|+.
T Consensus 85 ~~~g~~ 90 (92)
T cd03128 85 ICLGAQ 90 (92)
T ss_pred Eecccc
Confidence 999983
No 111
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.70 E-value=0.0095 Score=52.76 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=53.3
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCe---EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~---v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+|+|+-.............+.|++.+.. ++++....+ . . ...+ ..+||.|||.||..+...
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~----~~~~--~~~~dgvIi~Gg~~~~~d 66 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-P--------L----PDLD--LDDYSGVIVGGSPFNVSD 66 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-C--------C----CCCC--HhhccEEEEcCCCCcCCC
Confidence 45655554433222125567777777644 444333221 0 0 0112 267999999999533222
Q ss_pred h--hcCH-------HHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 F--AKSK-------KLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 l--~~~~-------~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
. ...+ .+.++++.....+++|.+||-|..+ |+.+
T Consensus 67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Ql-la~a 109 (242)
T PRK07567 67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGT-LGHH 109 (242)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHH-HHHH
Confidence 1 0111 2334555555899999999999876 7654
No 112
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.65 E-value=0.0097 Score=52.21 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCeEEEEeCCCc--chhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc-ch
Q 019238 160 SPQILVPIANGS--EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GA 235 (344)
Q Consensus 160 ~~~v~ill~~g~--~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~-~~ 235 (344)
.+||+++-+-.. +..+ +....+.|++.|++++.+.... ...+.+ .+.|+|+|+||.. ..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGnt~~l 93 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGNTFQL 93 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCccHHHH
Confidence 467777776542 2222 3457888999998876553221 012233 5679999999942 12
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
........+.+.|++.+++|+++++.|+|+.+ ++.
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii-~~~ 128 (233)
T PRK05282 94 LKQLYERGLLAPIREAVKNGTPYIGWSAGANV-AGP 128 (233)
T ss_pred HHHHHHCCcHHHHHHHHHCCCEEEEECHHHHh-hhc
Confidence 22345556888999999999999999999643 554
No 113
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.65 E-value=0.0052 Score=52.63 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHH
Q 019238 175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQ 251 (344)
Q Consensus 175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~ 251 (344)
.+..+.+.|+..|++++++..+ ++. .++|.|++||+...... +.... ...+++++
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~ 67 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV 67 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence 4566778888888877665521 122 56899999995221111 22222 33444778
Q ss_pred HhcCCcEEEEcchhhhhhhhc
Q 019238 252 KESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 252 ~~~~k~I~aic~G~~~lLa~a 272 (344)
.+.+++|.++|.|..+ |+.+
T Consensus 68 ~~~~~pvlGiC~G~Ql-l~~~ 87 (196)
T TIGR01855 68 VRLGKPVLGICLGMQL-LFER 87 (196)
T ss_pred HhCCCCEEEECHHHHH-hhhc
Confidence 8899999999999766 8887
No 114
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.64 E-value=0.0069 Score=46.74 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=56.5
Q ss_pred eEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc--hHhhh
Q 019238 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFA 239 (344)
Q Consensus 162 ~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~--~~~l~ 239 (344)
+|+|.--+|.+...+......|+..- ++..++.+. +. +..++ .++|.||+|||... +..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence 35666667888888888888887643 333333221 00 11111 47899999998422 22332
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
... .+.|+++.++++++.+||.|+ . +|
T Consensus 64 -~~g-~~~i~~~v~~g~p~LGIClGA-y-~a 90 (114)
T cd03144 64 -GKG-NRRIRNFVRNGGNYLGICAGA-Y-LA 90 (114)
T ss_pred -hhC-cHHHHHHHHCCCcEEEEecCc-c-ce
Confidence 333 788888889999999999995 4 55
No 115
>PRK05670 anthranilate synthase component II; Provisional
Probab=96.60 E-value=0.011 Score=50.36 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=56.2
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+.|.. +.-...+.+.|++.|++++++..+.. . .+.....++|.||+.||.+.+.. ....
T Consensus 2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~--------------~~~~~~~~~dglIlsgGpg~~~d---~~~~ 62 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T--------------LEEIEALNPDAIVLSPGPGTPAE---AGIS 62 (189)
T ss_pred EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhCCCCEEEEcCCCCChHH---cchH
Confidence 3444433 33345678889999999988877531 0 11111235899999888654433 3345
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..+|++. .+++||.+||-|..+ |+.+
T Consensus 63 ~~~l~~~-~~~~PvLGIClG~Ql-la~a 88 (189)
T PRK05670 63 LELIREF-AGKVPILGVCLGHQA-IGEA 88 (189)
T ss_pred HHHHHHh-cCCCCEEEECHHHHH-HHHH
Confidence 6777764 567999999999877 6543
No 116
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.56 E-value=0.0082 Score=51.09 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--------------hhcCHH
Q 019238 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--------------FAKSKK 243 (344)
Q Consensus 178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--------------l~~~~~ 243 (344)
...+.|+..|+...++..... . + .+... ...+|.|++|||...... ...+..
T Consensus 23 ~~~~~l~~~G~~~~iv~~~~~-~-----------~-~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~ 88 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPVDD-E-----------E-DLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAF 88 (189)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-h-----------H-HHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHH
Confidence 467788888887766654431 0 0 11111 156899999999532111 112234
Q ss_pred HHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 244 LVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 244 l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..++++++.+.+++|.+||.|..+ |+.
T Consensus 89 ~~~~~~~~~~~~~PilgiC~G~Q~-l~~ 115 (189)
T cd01745 89 ELALLRAALERGKPILGICRGMQL-LNV 115 (189)
T ss_pred HHHHHHHHHHCCCCEEEEcchHHH-HHH
Confidence 578999999999999999999876 543
No 117
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.02 Score=48.97 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCeE-EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc--CHHHHHHHHHHHhc
Q 019238 178 IIIDILRRAKANV-VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKES 254 (344)
Q Consensus 178 ~~~~~l~~~~~~v-~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~--~~~l~~~l~~~~~~ 254 (344)
.+...++..|+.. ++...+. .....+..++|.+||.||..+... .. .+...+||++....
T Consensus 16 li~r~~re~g~v~~e~~~~~~----------------~~~~~~~~~~~giIlsGgp~sv~~-~~~w~~~~~~~i~~~~~p 78 (198)
T COG0518 16 LIARRLRELGYVYSEIVPYTG----------------DAEELPLDSPDGIIISGGPMSVYD-EDPWLPREKDLIKDAGVP 78 (198)
T ss_pred HHHHHHHHcCCceEEEEeCCC----------------CcccccccCCCEEEEcCCCCCCcc-ccccchhHHHHHHHhCCC
Confidence 4456777788433 3333333 233333345699999999643222 33 67889999999999
Q ss_pred CCcEEEEcchhhhhhhh
Q 019238 255 NRPYGAICASPALVLEP 271 (344)
Q Consensus 255 ~k~I~aic~G~~~lLa~ 271 (344)
+++|.+||.|..+ +|.
T Consensus 79 ~~pvLGIC~G~Ql-~A~ 94 (198)
T COG0518 79 GKPVLGICLGHQL-LAK 94 (198)
T ss_pred CCCEEEEChhHHH-HHH
Confidence 9999999999877 664
No 118
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=96.55 E-value=0.0038 Score=52.88 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=48.1
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhh-hcccCChHHHHHHHHHhhCCCEEEEEchhH
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGA-TNLKESEVLESIVKKQASDGRLYAAICVFL 84 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~ 84 (344)
..+.|++.|+++.++++.. ......++-+. ||.... ..+..+..+.++|+++.++|+++.+||.|.
T Consensus 14 ~~~~l~~~g~~~~~v~~~~--~l~~~d~liip-----------GG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 14 HARALEALGVEGVEVKRPE--QLDEIDGLIIP-----------GGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred HHHHHHHCCCEEEEECChH--HhccCCEEEEC-----------CCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 4577888888888887632 11111111111 553222 233455678899999999999999999999
Q ss_pred HHHHHHc
Q 019238 85 AVALGSW 91 (344)
Q Consensus 85 ~~~La~a 91 (344)
. +|+++
T Consensus 81 q-lL~~~ 86 (184)
T TIGR03800 81 I-MLAKE 86 (184)
T ss_pred H-HHHhh
Confidence 5 99987
No 119
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=96.52 E-value=0.0056 Score=52.06 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k 256 (344)
..+...|++.|.+++++..... . ....+ ...+||.++|+||...... .+...++++++.++++
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~-~-----------~~~~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSD-F-----------EEPLE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGG-H-----------HHHHH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeEEEEECCCc-h-----------hhhhh--hhcCCCEEEECCcCCcccc---ccccccccccccccce
Confidence 4567888889988888876542 0 00011 2378999999999654332 4678888999889999
Q ss_pred cEEEEcchhhhhhhhc
Q 019238 257 PYGAICASPALVLEPH 272 (344)
Q Consensus 257 ~I~aic~G~~~lLa~a 272 (344)
+|.+||-|..+ |+.+
T Consensus 74 PilGIC~G~Q~-la~~ 88 (192)
T PF00117_consen 74 PILGICLGHQI-LAHA 88 (192)
T ss_dssp EEEEETHHHHH-HHHH
T ss_pred EEEEEeehhhh-hHHh
Confidence 99999999877 6643
No 120
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=96.46 E-value=0.011 Score=50.44 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=58.5
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
|++-|.++..... ..+.|++.|+.+.++..+.+ .+......++|.+++-||...+. ++...
T Consensus 2 il~id~~dsft~~-~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~---~~~~~ 62 (193)
T PRK08857 2 LLMIDNYDSFTYN-LYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPN---EAGIS 62 (193)
T ss_pred EEEEECCCCcHHH-HHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChH---HCcch
Confidence 4566666665543 78888999999988876632 11222123578999998864443 23345
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..+++. .++++||.+||-|..+ |+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIClG~Ql-ia~a 88 (193)
T PRK08857 63 LQAIEH-FAGKLPILGVCLGHQA-IAQV 88 (193)
T ss_pred HHHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence 677766 5789999999999877 6653
No 121
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.42 E-value=0.0046 Score=53.08 Aligned_cols=74 Identities=28% Similarity=0.330 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh--hcCHHHHHHHHHHHhc
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AKSKKLVNMLKKQKES 254 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l--~~~~~l~~~l~~~~~~ 254 (344)
......|++.|++++++.. .++. .++|.||+||+....... .....+.++|+++.+.
T Consensus 13 ~~~~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~ 71 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK 71 (199)
T ss_pred HHHHHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC
Confidence 4455688888888776511 1233 568999999963211211 1223467899999999
Q ss_pred CCcEEEEcchhhhhhhhc
Q 019238 255 NRPYGAICASPALVLEPH 272 (344)
Q Consensus 255 ~k~I~aic~G~~~lLa~a 272 (344)
+++|.++|.|..+ |+.+
T Consensus 72 ~~PvlGiC~G~Ql-l~~~ 88 (199)
T PRK13181 72 KQPVLGICLGMQL-LFES 88 (199)
T ss_pred CCCEEEECHhHHH-hhhh
Confidence 9999999999765 8875
No 122
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.40 E-value=0.0091 Score=57.24 Aligned_cols=88 Identities=26% Similarity=0.268 Sum_probs=60.3
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch--Hhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~--~~l 238 (344)
.||+|.--.=|+. -+-.-.+.|+++ .++..+|+-.. +.. +++|+|++|||.... ..+
T Consensus 234 ~~iavA~D~AF~F-yY~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L 292 (433)
T PRK13896 234 PTVAVARDAAFCF-RYPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL 292 (433)
T ss_pred CeEEEEEcCccce-eCHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence 5888766543333 223356778777 78888887432 122 468999999997432 224
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+... +-|+++.++|++|.++|.|-.+ |.+
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~-L~~ 323 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGGLMA-LAE 323 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehHHHH-hhc
Confidence 445445 8899999999999999999644 765
No 123
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.37 E-value=0.0044 Score=51.83 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCchhhh--cccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHH
Q 019238 49 CGMPGAT--NLKESEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (344)
Q Consensus 49 gG~~~~~--~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (344)
|| .... .+.++..+.+.|+++.+ ++++.+||.|+ .+|++
T Consensus 47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~-qlL~~ 87 (179)
T PRK13526 47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGS-IILSK 87 (179)
T ss_pred CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHH-HHHHc
Confidence 66 3333 45566779999999885 78999999999 59998
No 124
>CHL00101 trpG anthranilate synthase component 2
Probab=96.33 E-value=0.015 Score=49.47 Aligned_cols=87 Identities=13% Similarity=0.216 Sum_probs=54.8
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
|++.|..+... ..+.+.|+..|+++.++..+.. .+++....++|.|||-||.+.+.+ .+..
T Consensus 2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~---~~~~ 62 (190)
T CHL00101 2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRD---SGIS 62 (190)
T ss_pred EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHH---Ccch
Confidence 34445444333 4477888998988876665431 122332246899999999655433 2222
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..++ +.+..++||.+||-|..+ |+.+
T Consensus 63 ~~i~-~~~~~~~PiLGIClG~Ql-la~~ 88 (190)
T CHL00101 63 LDVI-SSYAPYIPILGVCLGHQS-IGYL 88 (190)
T ss_pred HHHH-HHhcCCCcEEEEchhHHH-HHHH
Confidence 3333 456789999999999877 6653
No 125
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=96.33 E-value=0.016 Score=48.97 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k 256 (344)
..+.+.|++.|+++.++..+.. . ....+. .+||.||+.||..... ++. ....+++...+++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~-~------------~~~~~~--~~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~ 72 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEI-T------------LEELEL--LNPDAIVISPGPGHPE---DAG-ISLEIIRALAGKV 72 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCC-C------------HHHHhh--cCCCEEEECCCCCCcc---cch-hHHHHHHHHhcCC
Confidence 3466888889999988887652 1 011123 5799999977744322 222 3445555567789
Q ss_pred cEEEEcchhhhhhhhc
Q 019238 257 PYGAICASPALVLEPH 272 (344)
Q Consensus 257 ~I~aic~G~~~lLa~a 272 (344)
||.+||-|..+ |+.+
T Consensus 73 PvlGIC~G~Ql-la~~ 87 (184)
T cd01743 73 PILGVCLGHQA-IAEA 87 (184)
T ss_pred CEEEECHhHHH-HHHH
Confidence 99999999776 6654
No 126
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.25 E-value=0.019 Score=49.58 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=55.8
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
+||+++ |..+..- ..+.+.|++.|+.++++..+. .+++....+||.||+-||.+.+..
T Consensus 2 ~~il~i--D~~dsf~-~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d--- 59 (208)
T PRK05637 2 THVVLI--DNHDSFV-YNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD--- 59 (208)
T ss_pred CEEEEE--ECCcCHH-HHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH---
Confidence 454443 4333322 347888899999888776543 123332347899999888655433
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.....++++... .++||.+||-|..+ |+.+
T Consensus 60 ~~~~~~li~~~~-~~~PiLGIClG~Ql-la~a 89 (208)
T PRK05637 60 AGNMMALIDRTL-GQIPLLGICLGFQA-LLEH 89 (208)
T ss_pred hhHHHHHHHHHh-CCCCEEEEcHHHHH-HHHH
Confidence 223456666543 57999999999877 6654
No 127
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.24 E-value=0.043 Score=53.50 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeee---cCCCCeEEEEe-CCCcchh
Q 019238 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEEM 174 (344)
Q Consensus 99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~~ 174 (344)
..++|.+-...+..+.=+.+-++-. .+.+.+.+.++... ..+..-..+..+ .....+|+++= |-...+
T Consensus 231 ~~~vi~~~d~~~iy~vPl~l~~q~~----~~~i~~~l~l~~~~---~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~D- 302 (533)
T PRK05380 231 EEAVISAPDVDSIYEVPLLLHEQGL----DDIVLERLGLEAPE---PDLSEWEELVERLKNPKGEVTIALVGKYVELPD- 302 (533)
T ss_pred HHHEEEcCCCccHHhhhHHHHHCCC----HHHHHHHcCCCCCC---CCHHHHHHHHHHHhCCCCceEEEEEeCccCCcH-
Confidence 3578888888877777777655544 44555555554211 111111111100 11245666554 223333
Q ss_pred HHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHH
Q 019238 175 EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK 250 (344)
Q Consensus 175 e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~ 250 (344)
.+..+.+.|..++ .++.+.-.+.. .+. .+...+.. ..+|.|++|||++.. ..+..+.+++.
T Consensus 303 aY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~--------~~~~~~~L--~~~DGIIlpGGfG~~----~~~g~i~~i~~ 367 (533)
T PRK05380 303 AYKSVIEALKHAGIANDVKVNIKWIDSE-DLE--------EENVAELL--KGVDGILVPGGFGER----GIEGKILAIRY 367 (533)
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEEEChh-hcc--------CcchhhHh--hcCCEEEecCCCCcc----ccccHHHHHHH
Confidence 3556778887775 34444444331 111 11112233 678999999997532 23356788999
Q ss_pred HHhcCCcEEEEcchhhh
Q 019238 251 QKESNRPYGAICASPAL 267 (344)
Q Consensus 251 ~~~~~k~I~aic~G~~~ 267 (344)
+.++++|+.+||-|..+
T Consensus 368 a~e~~iPiLGIClGmQl 384 (533)
T PRK05380 368 ARENNIPFLGICLGMQL 384 (533)
T ss_pred HHHCCCcEEEEchHHHH
Confidence 99999999999999765
No 128
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.22 E-value=0.035 Score=52.29 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=60.5
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.+||+++=+ |+.. .+.+.|.+.|+++.++..+. +.++....++|.|++.||.+.+..
T Consensus 192 ~~~I~viD~-g~k~----ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~~-- 248 (382)
T CHL00197 192 QLKIIVIDF-GVKY----NILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPSA-- 248 (382)
T ss_pred CCEEEEEEC-CcHH----HHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChhH--
Confidence 467776655 5542 37888888999988775432 123333347899999999654432
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
....++.++++.+.+.||.+||-|..+ |+.
T Consensus 249 -~~~~i~~i~~~~~~~~PilGIClGhQl-La~ 278 (382)
T CHL00197 249 -IHYGIKTVKKLLKYNIPIFGICMGHQI-LSL 278 (382)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEcHHHHH-HHH
Confidence 345677788877778999999999877 553
No 129
>PRK00758 GMP synthase subunit A; Validated
Probab=96.20 E-value=0.018 Score=48.64 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=45.3
Q ss_pred HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCc-cEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238 179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY-DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (344)
Q Consensus 179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~-D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~ 257 (344)
+.+.|++.|+++.++..+. ..++. .++ |.|+++||. ... ....+.+|++ +.++|
T Consensus 15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence 4677888888776655432 12333 456 999999995 222 2234566776 45799
Q ss_pred EEEEcchhhhhhhhc
Q 019238 258 YGAICASPALVLEPH 272 (344)
Q Consensus 258 I~aic~G~~~lLa~a 272 (344)
|.+||.|..+ |+.+
T Consensus 70 ilGIC~G~Q~-L~~a 83 (184)
T PRK00758 70 ILGICLGHQL-IAKA 83 (184)
T ss_pred EEEEeHHHHH-HHHh
Confidence 9999999876 7654
No 130
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=96.19 E-value=0.017 Score=49.46 Aligned_cols=87 Identities=9% Similarity=0.204 Sum_probs=57.5
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|..+.... .+.+.|++.|+++.++..+.. .+++....++|.||+.||...+.. ....
T Consensus 2 il~idn~dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFTF-NLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGIS 62 (195)
T ss_pred EEEEeCCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCc
Confidence 455555555443 378889999999888775531 122332246899999999655443 2334
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
...++. +..++||.+||-|..+ |+.+
T Consensus 63 ~~~i~~-~~~~~PvLGIClG~Ql-la~~ 88 (195)
T PRK07649 63 MEVIRY-FAGKIPIFGVCLGHQS-IAQV 88 (195)
T ss_pred hHHHHH-hcCCCCEEEEcHHHHH-HHHH
Confidence 566664 4578999999999877 6654
No 131
>PRK13566 anthranilate synthase; Provisional
Probab=96.16 E-value=0.035 Score=56.73 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
...++|+|+=+.. .-...+.+.|++.|+++.++..... ...++ ..++|.||+.||.+.+.
T Consensus 524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~- 583 (720)
T PRK13566 524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS- 583 (720)
T ss_pred CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh-
Confidence 4568887666652 3466788999999999988877542 00112 14689999977755433
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+..+.++|++..++++||.+||-|..+ |+.+
T Consensus 584 ---d~~~~~lI~~a~~~~iPILGIClG~Ql-La~a 614 (720)
T PRK13566 584 ---DFDCKATIDAALARNLPIFGVCLGLQA-IVEA 614 (720)
T ss_pred ---hCCcHHHHHHHHHCCCcEEEEehhHHH-HHHH
Confidence 234678999999999999999999877 6543
No 132
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.16 E-value=0.026 Score=47.96 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=52.7
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh--hhc
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAK 240 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~--l~~ 240 (344)
|+|+=|..-+. ......|++.|+++.++... +++ .++|.||+||+-..... ..+
T Consensus 2 i~iidyg~gN~---~s~~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~ 57 (192)
T PRK13142 2 IVIVDYGLGNI---SNVKRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK 57 (192)
T ss_pred EEEEEcCCccH---HHHHHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 66776664444 44566777777776654321 333 46899999998321111 112
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
...+.+.|++ ..+++|.+||.|..+ |++.
T Consensus 58 ~~gl~~~i~~--~~g~PvlGIClGmQl-L~~~ 86 (192)
T PRK13142 58 RLNLNAILAK--NTDKKMIGICLGMQL-MYEH 86 (192)
T ss_pred HCCcHHHHHH--hCCCeEEEECHHHHH-Hhhh
Confidence 2346777877 568999999999765 6643
No 133
>PLN02335 anthranilate synthase
Probab=96.13 E-value=0.029 Score=48.97 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.++|+|+ |..+... ..+.+.|++.|++++++..+.. .+++....++|.|||.||...+..
T Consensus 18 ~~~ilvi--D~~dsft-~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d-- 77 (222)
T PLN02335 18 NGPIIVI--DNYDSFT-YNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQD-- 77 (222)
T ss_pred cCcEEEE--ECCCCHH-HHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh--
Confidence 3577666 5433333 4578889999999988865421 123222246899999999665543
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.....+++++ ....+||.+||-|..+ |+.
T Consensus 78 -~~~~~~~~~~-~~~~~PiLGIClG~Ql-La~ 106 (222)
T PLN02335 78 -SGISLQTVLE-LGPLVPLFGVCMGLQC-IGE 106 (222)
T ss_pred -ccchHHHHHH-hCCCCCEEEecHHHHH-HHH
Confidence 2234566654 4567999999999876 654
No 134
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.12 E-value=0.021 Score=48.03 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCC
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k 256 (344)
..+.+.|++.|+++.++..+.+ .++....+||.||++||...... ...+.+ .++..+.++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~---~~~~~~~~~ 71 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRV---DPEIFELGV 71 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchh---hHHHHhcCC
Confidence 4467888888988877665431 11112367999999999542211 112233 344455699
Q ss_pred cEEEEcchhhhhhhhc
Q 019238 257 PYGAICASPALVLEPH 272 (344)
Q Consensus 257 ~I~aic~G~~~lLa~a 272 (344)
++.+||.|..+ |+.+
T Consensus 72 PilGIC~G~Ql-l~~~ 86 (181)
T cd01742 72 PVLGICYGMQL-IAKA 86 (181)
T ss_pred CEEEEcHHHHH-HHHh
Confidence 99999999876 6653
No 135
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=96.07 E-value=0.017 Score=56.41 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCccEEEEcCCccchHhh--hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 221 LSYDLIVLPGGLGGAQAF--AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l--~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
+++|+|++|||......+ ..+..+.+.|+++.++|++|.++|.|-.+ |.+
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~-Lg~ 334 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQM-LGK 334 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHH-hhh
Confidence 578999999997433332 24556889999999999999999999644 876
No 136
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.98 E-value=0.014 Score=50.52 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc---chHhhh
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQAFA 239 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~---~~~~l~ 239 (344)
|+|+=|..- .+......++..++++.+++. .++. .++|.||+||+-. ....+.
T Consensus 2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l~ 57 (210)
T PRK14004 2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENLN 57 (210)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 455544422 445566667777666554422 2333 5789999999842 222332
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
...+.++|+++.+++++|.+||.|..+ |+++
T Consensus 58 -~~gl~~~i~~~~~~~~pilGiC~G~Q~-l~~~ 88 (210)
T PRK14004 58 -STGLRSTIDKHVESGKPLFGICIGFQI-LFES 88 (210)
T ss_pred -HcCcHHHHHHHHHcCCCEEEECHhHHH-HHHh
Confidence 335888999999999999999999766 7664
No 137
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.96 E-value=0.019 Score=55.78 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCccEEEEcCCccc-hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 221 LSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 221 ~~~D~liipGG~~~-~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.++|.||+|||... ...+ ...+.+.|+++ |++|.+||.|-.+ |++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~Qm-Lg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQI-LSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHh-cccc
Confidence 67899999998411 1112 23556666665 8999999999655 8765
No 138
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=95.87 E-value=0.041 Score=51.49 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=58.6
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
++|+++=+ |+. ....+.|.+.|+++.++..+. ++++.....+|.|++.||.+.+. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence 46666644 554 247788888999887664332 13333223569999999965443 3
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.+..+++++++.+ ++||.+||-|..+ |+.
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Ql-La~ 258 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQL-LAL 258 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHHH-HHH
Confidence 4567788888887 8999999999887 554
No 139
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=95.83 E-value=0.056 Score=50.51 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=58.8
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.++|.++=+ |+ -..+.+.|.+.|+.+.++..+. ..+++...++|.|+++||.+.+.
T Consensus 167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~--- 222 (354)
T PRK12838 167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK--- 222 (354)
T ss_pred CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---
Confidence 467665544 43 2457778888898887775442 12333224789999999965443
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
+....+++++++.++ +||.+||-|..+ |+.
T Consensus 223 ~~~~~~~~i~~~~~~-~PvlGIClG~Ql-La~ 252 (354)
T PRK12838 223 ELQPYLPEIKKLISS-YPILGICLGHQL-IAL 252 (354)
T ss_pred HhHHHHHHHHHHhcC-CCEEEECHHHHH-HHH
Confidence 344567888888877 999999999877 653
No 140
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.74 E-value=0.064 Score=54.82 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=63.1
Q ss_pred CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
...++|+|+=+. +.....+.+.|++.|+++.++..... +..++ . .++|.|||.||.+.+.
T Consensus 514 ~~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~-~--~~~DgLILsgGPGsp~- 573 (717)
T TIGR01815 514 GEGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD-E--RRPDLVVLSPGPGRPA- 573 (717)
T ss_pred CCCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh-h--cCCCEEEEcCCCCCch-
Confidence 346788877544 33456788999999999877765421 00111 1 4689999977754433
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+....++|++..+.++||.+||-|..+ |+.+
T Consensus 574 ---d~~~~~~I~~~~~~~iPvLGICLG~Ql-La~a 604 (717)
T TIGR01815 574 ---DFDVAGTIDAALARGLPVFGVCLGLQG-MVEA 604 (717)
T ss_pred ---hcccHHHHHHHHHCCCCEEEECHHHHH-Hhhh
Confidence 234577888888999999999999877 6654
No 141
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.72 E-value=0.066 Score=50.06 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=63.0
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhc---CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~---~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+|+|.--+|.....+...++.|++. .|.+..++.+. +..+ .+ ...++++|+|||..-...
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw----~~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PW----QSKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-cc----ccCCcEEEECCCcchHHH
Confidence 67888888899999999999999864 35555443321 1111 11 146899999999532222
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
-.-+..-.+.||+|.++|+--.++|+|+ . +|.
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGa-Y-~as 96 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGA-Y-YAS 96 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcch-h-hhc
Confidence 2235556788999999899999999996 4 543
No 142
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.72 E-value=0.023 Score=55.13 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=47.8
Q ss_pred HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238 8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAICV 82 (344)
Q Consensus 8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (344)
+.|++.|.++..+++-... .+.+++.. ||.+. ...+..+..+.+.|+++.++|++|.++|.
T Consensus 265 ~~L~~~g~~~~~~~~~~~~--------------~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCg 330 (451)
T PRK01077 265 ELLRAAGAELVFFSPLADE--------------ALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECG 330 (451)
T ss_pred HHHHHCCCEEEEeCCcCCC--------------CCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcH
Confidence 5566777777777763111 11122211 66544 35566788899999999999999999999
Q ss_pred hHHHHHHHcC
Q 019238 83 FLAVALGSWG 92 (344)
Q Consensus 83 g~~~~La~aG 92 (344)
|.+ +|++.=
T Consensus 331 G~~-~L~~~i 339 (451)
T PRK01077 331 GLM-YLGESL 339 (451)
T ss_pred HHH-HHHhhh
Confidence 995 777653
No 143
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.06 Score=46.30 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHhCCCeEEEEEecCCccee-cCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238 7 IDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~-~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (344)
+..|+++|++...|-.+.. ... ...++-+.---+..|... .|. . ..-+.+++-++++.++|+++.+||.|--
T Consensus 20 ~~A~~~aG~~~~~V~~~d~-~~~~~~d~vv~pGGFSyGDyLr-~Ga--i---aa~~~v~~~v~~~a~~g~~vLGICNGfQ 92 (231)
T COG0047 20 AAAFERAGFEAEDVWHSDL-LLGRDFDGVVLPGGFSYGDYLR-AGA--I---AAIAPVMDEVREFAEKGKPVLGICNGFQ 92 (231)
T ss_pred HHHHHHcCCCceEEEeeec-ccCCCccEEEEcCCCCcccccC-cch--H---HhhHHHHHHHHHHHHCCCeEEEEcchhH
Confidence 4556788998888887742 111 123333332222222222 221 1 1227888999999999999999999995
Q ss_pred HHHHHcCCCCC
Q 019238 86 VALGSWGLLKG 96 (344)
Q Consensus 86 ~~La~aGll~g 96 (344)
+|.++|||-|
T Consensus 93 -iL~e~gLlPG 102 (231)
T COG0047 93 -ILSEAGLLPG 102 (231)
T ss_pred -HHHHcCcCCc
Confidence 9999999975
No 144
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=95.65 E-value=0.023 Score=50.66 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=55.8
Q ss_pred hHHHHHhCCCeEEEEEecC----CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhC-CCEEEEE
Q 019238 6 TIDVLRRSGADVVVASVEK----QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD-GRLYAAI 80 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~----~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~-g~~i~ai 80 (344)
.+..|+++|+++..|..+. ........++-+.--.+..|... +|-.....+..++.+.+.|++|.++ |+++.+|
T Consensus 18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~-sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGI 96 (259)
T PF13507_consen 18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLR-SGAIAAARLLFNSPLMDAIREFLERPGGFVLGI 96 (259)
T ss_dssp HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTS-TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccch-HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEE
Confidence 3556789999999987652 11222333444433333322221 3322333455578889999999999 9999999
Q ss_pred chhHHHHHHHcCCCCC
Q 019238 81 CVFLAVALGSWGLLKG 96 (344)
Q Consensus 81 C~g~~~~La~aGll~g 96 (344)
|.|- -+|.++|||.+
T Consensus 97 cNGf-QiL~~~Gllp~ 111 (259)
T PF13507_consen 97 CNGF-QILVELGLLPG 111 (259)
T ss_dssp CHHH-HHHCCCCCSTT
T ss_pred chHh-HHHHHhCcCCC
Confidence 9999 59999999965
No 145
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.64 E-value=0.021 Score=56.27 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=59.5
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh-
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~- 237 (344)
..++|+|+=|-.=+..+ ....|+..|+++.++.. .+++ .++|.||+||+-.....
T Consensus 5 ~~~~i~iiDyG~GN~~s---l~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m 60 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRS---VRNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM 60 (538)
T ss_pred CCCeEEEEECCCCCHHH---HHHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence 35788876665434433 56777788887755431 1233 57899999996321111
Q ss_pred -hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 -FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 -l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
...+..+.+.|+++.+.++|+.+||.|..+ |+.+
T Consensus 61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Ql-La~~ 95 (538)
T PLN02617 61 DVLNNRGMAEALREYIQNDRPFLGICLGLQL-LFES 95 (538)
T ss_pred HHHHHcCHHHHHHHHHHcCCCEEEECHHHHH-Hhhh
Confidence 123335788899999999999999999776 8864
No 146
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.57 E-value=0.029 Score=48.20 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHH-
Q 019238 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQ- 251 (344)
Q Consensus 176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~- 251 (344)
+..+.+.|++.|+++.++... ++. .++|.||+||+-..... +... .+...|+++
T Consensus 12 ~~~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~ 69 (201)
T PRK13152 12 LNSVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQV 69 (201)
T ss_pred HHHHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHH
Confidence 344567777777776553321 223 46899999997431111 1111 234555554
Q ss_pred HhcCCcEEEEcchhhhhhhhc
Q 019238 252 KESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 252 ~~~~k~I~aic~G~~~lLa~a 272 (344)
++++++|.+||.|..+ |+.+
T Consensus 70 ~~~~~pvlGiC~G~Q~-l~~~ 89 (201)
T PRK13152 70 LVQKKPILGICLGMQL-FLER 89 (201)
T ss_pred HhCCCcEEEECHhHHH-Hhhc
Confidence 5789999999999765 8876
No 147
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.43 E-value=0.021 Score=49.04 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=46.7
Q ss_pred hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
...+.|+++|+++.+++.. . .+++.+-. ||......+...+.+.++|+++.++++++.+||
T Consensus 15 ~~~~~l~~~G~~~~~~~~~--~--------------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC 78 (200)
T PRK13143 15 SVSKALERAGAEVVITSDP--E--------------EILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGIC 78 (200)
T ss_pred HHHHHHHHCCCeEEEECCH--H--------------HHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3466788889988887521 0 11222211 321112223445678899999999999999999
Q ss_pred hhHHHHHHHcC
Q 019238 82 VFLAVALGSWG 92 (344)
Q Consensus 82 ~g~~~~La~aG 92 (344)
.|.. +|+++.
T Consensus 79 ~G~q-~l~~~~ 88 (200)
T PRK13143 79 LGMQ-LLFESS 88 (200)
T ss_pred HHHH-HHhhhh
Confidence 9996 999864
No 148
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=95.43 E-value=0.039 Score=47.32 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhh-hcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238 8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
+.|++.|++++++..... ..+.+.+.. ||.... ..+..+..+.++|+++.++++++.+||.|
T Consensus 21 ~~l~~~g~~~~~~~~~~~--------------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G 86 (200)
T PRK13527 21 RALDELGIDGEVVEVRRP--------------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAG 86 (200)
T ss_pred HHHHhcCCCeEEEEeCCh--------------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHH
Confidence 456677887777766521 011222211 553221 12334556899999999999999999999
Q ss_pred HHHHHHHc
Q 019238 84 LAVALGSW 91 (344)
Q Consensus 84 ~~~~La~a 91 (344)
.. +|+++
T Consensus 87 ~Q-ll~~~ 93 (200)
T PRK13527 87 LI-LLAKE 93 (200)
T ss_pred HH-HHHhh
Confidence 95 99987
No 149
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=95.41 E-value=0.032 Score=47.44 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=28.6
Q ss_pred ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+..+..+.++++++.++|+++.+||.|.. +|+++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~ 88 (189)
T PRK13525 55 LLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE 88 (189)
T ss_pred HHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 34456678999999999999999999995 88864
No 150
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=95.08 E-value=0.04 Score=47.07 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhhhccc--CChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238 8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLK--ESEVLESIVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~--~~~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (344)
..+++.|++++++++..+ +....++-+. ||......+. ++..+.+.|+++.++|+++.+||.|..
T Consensus 17 ~~~~~~G~~~~~~~~~~~--~~~~d~lilp-----------Gg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~q 83 (194)
T cd01750 17 PLAREPGVDVRYVEVPEG--LGDADLIILP-----------GSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQ 83 (194)
T ss_pred HHHhcCCceEEEEeCCCC--CCCCCEEEEC-----------CCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHH
Confidence 345667888888887742 1111111111 4432222222 245688999999999999999999995
Q ss_pred HHHHHcCC
Q 019238 86 VALGSWGL 93 (344)
Q Consensus 86 ~~La~aGl 93 (344)
+|++.-.
T Consensus 84 -lL~~~~~ 90 (194)
T cd01750 84 -MLGKYIV 90 (194)
T ss_pred -Hhhhhcc
Confidence 8887654
No 151
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.49 E-value=0.35 Score=47.34 Aligned_cols=145 Identities=18% Similarity=0.264 Sum_probs=80.8
Q ss_pred CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeee---cCCCCeEEEEe-CCCcchh
Q 019238 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEEM 174 (344)
Q Consensus 99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~~ 174 (344)
..++|.+-...+..+.=+.+-++ ...+.+.+.+.++... .+ +.+-..+..+ .....+|+++- |....+
T Consensus 232 ~~~vi~~~d~~~iY~vPl~l~~q----~~~~~i~~~l~l~~~~-~~--~~~W~~~~~~~~~~~~~v~IalVGKY~~~~d- 303 (525)
T TIGR00337 232 EEAVINAHDVSSIYEVPLLLLKQ----GLDDYLCRRLNLNCDE-AD--LSEWEELVEKFINPKHEVTIGIVGKYVELKD- 303 (525)
T ss_pred HHHEEEcCCCccHhhhhHHHHHC----ChHHHHHHHhCCCCCC-Cc--HHHHHHHHHHhhCCCCCcEEEEEeCCcCCHH-
Confidence 35788888888766666666554 3445555666554211 01 1111111111 12346777665 323322
Q ss_pred HHHHHHHHHHhcCC----eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHH
Q 019238 175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK 250 (344)
Q Consensus 175 e~~~~~~~l~~~~~----~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~ 250 (344)
.+..+.+.|..+++ ++.+...+.. .+. .. ..+.. .++|.|++|||.+.. ..+..+..++.
T Consensus 304 aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~--------~~-~~~~L--~~~dGIiLpGG~G~~----~~~g~i~ai~~ 367 (525)
T TIGR00337 304 SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLE--------EE-GAEFL--KGVDGILVPGGFGER----GVEGKILAIKY 367 (525)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEecHH-Hhh--------hh-hhhhh--cCCCEEEeCCCCCCh----hhcChHHHHHH
Confidence 45678888888875 2332222221 110 00 01112 568999999997532 23345567788
Q ss_pred HHhcCCcEEEEcchhhh
Q 019238 251 QKESNRPYGAICASPAL 267 (344)
Q Consensus 251 ~~~~~k~I~aic~G~~~ 267 (344)
+.+++.|+.+||-|..+
T Consensus 368 a~e~~iP~LGIClG~Ql 384 (525)
T TIGR00337 368 ARENNIPFLGICLGMQL 384 (525)
T ss_pred HHHcCCCEEEEcHHHHH
Confidence 88899999999999755
No 152
>PLN02327 CTP synthase
Probab=94.46 E-value=0.27 Score=48.28 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccc-cCCCcceeeeccceeee---cCCCCeEEEEe-CCCcch
Q 019238 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA-NHGDEFTIAEFNPVQWT---FDNSPQILVPI-ANGSEE 173 (344)
Q Consensus 99 dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~~~~v~ill-~~g~~~ 173 (344)
..++|.+-...+..+.=+.+-++- ..+.+.+.+.++. .+.. .+..-..+..+ .....+|+++- |-...+
T Consensus 238 ~~~Vi~~~d~~~iY~vPl~l~~q~----l~~~i~~~l~l~~~~~~~--~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~D 311 (557)
T PLN02327 238 AENILNLHDVSNIWHVPLLLRDQK----AHEAILKVLNLLSVAREP--DLEEWTARAESCDNLTEPVRIAMVGKYTGLSD 311 (557)
T ss_pred HHHEEEcCCCchHhhhhHHHHHCC----cHHHHHHHcCCCCCCCCC--ChHHHHHHHHHHhCCCCceEEEEEecccCCcH
Confidence 357888888877666666665553 4455566665542 1111 11111111101 12346777655 223333
Q ss_pred hHHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeee---ccccccccCCCccEEEEcCCccchHhhhcCHHHHH
Q 019238 174 MEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVA---DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN 246 (344)
Q Consensus 174 ~e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~---~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~ 246 (344)
.+..+.+.|..++ .++++.-.+.. .+.. .+..-.| +..++.. .++|.|++|||.+.. .....+.
T Consensus 312 -AY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~~DGIvvpGGfG~~----~~~G~i~ 382 (557)
T PLN02327 312 -SYLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KGADGILVPGGFGDR----GVEGKIL 382 (557)
T ss_pred -hHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--ccCCEEEeCCCCCCc----ccccHHH
Confidence 3456677777664 44444333321 1111 0100001 1112233 789999999996432 2234466
Q ss_pred HHHHHHhcCCcEEEEcchhhhh
Q 019238 247 MLKKQKESNRPYGAICASPALV 268 (344)
Q Consensus 247 ~l~~~~~~~k~I~aic~G~~~l 268 (344)
.++.+.++++|+.+||-|..++
T Consensus 383 ai~~are~~iP~LGIClGmQl~ 404 (557)
T PLN02327 383 AAKYARENKVPYLGICLGMQIA 404 (557)
T ss_pred HHHHHHHcCCCEEEEcHHHHHH
Confidence 7788888999999999997663
No 153
>PRK08250 glutamine amidotransferase; Provisional
Probab=94.46 E-value=0.14 Score=45.19 Aligned_cols=30 Identities=10% Similarity=0.316 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
....+||+++.+.++++.+||.|.. +|+++
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 3668999999999999999999995 88876
No 154
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=94.42 E-value=0.15 Score=48.41 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcC
Q 019238 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN 255 (344)
Q Consensus 176 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~ 255 (344)
-..+.+.|++.|+++.++..+. ..+++...++|.|++-||.+.+.. .+...+.+++.. ..
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~~---~~~~ie~ik~l~-~~ 310 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPSA---VPYAVETVKELL-GK 310 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChhH---hhHHHHHHHHHH-hC
Confidence 3667888888999988775543 133333357899999999654433 355677777766 47
Q ss_pred CcEEEEcchhhhhhhhc
Q 019238 256 RPYGAICASPALVLEPH 272 (344)
Q Consensus 256 k~I~aic~G~~~lLa~a 272 (344)
+||.+||-|..+ |+.+
T Consensus 311 iPIlGICLGhQl-La~A 326 (415)
T PLN02771 311 VPVFGICMGHQL-LGQA 326 (415)
T ss_pred CCEEEEcHHHHH-HHHh
Confidence 899999999877 6654
No 155
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.37 E-value=0.29 Score=41.20 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=57.8
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|+++..- ..+.+.|+..|.++.++-.+.- +....+..++|.|+|--|.+.+. +....
T Consensus 4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~ 64 (191)
T COG0512 4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGIS 64 (191)
T ss_pred EEEEECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence 45556666554 4468888988877766655421 12233345789999976655443 45567
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.+.|+++ ....||.++|-|-.. ++
T Consensus 65 ~~~i~~~-~~~~PiLGVCLGHQa-i~ 88 (191)
T COG0512 65 LELIRRF-AGRIPILGVCLGHQA-IA 88 (191)
T ss_pred HHHHHHh-cCCCCEEEECccHHH-HH
Confidence 8899988 667899999999765 55
No 156
>PLN02347 GMP synthetase
Probab=94.05 E-value=0.2 Score=49.63 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=54.1
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
.+|+|+=+..-. ...+...++..|+.+.++..+. +.+++...++|.||++||...... ..
T Consensus 11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~~-~~ 70 (536)
T PLN02347 11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVHV-EG 70 (536)
T ss_pred CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCcccc-cC
Confidence 356555443222 2345778888888777665443 234443347899999999543321 12
Q ss_pred CHHHH-HHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 241 SKKLV-NMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 241 ~~~l~-~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.+.+. .+++...+.++||.+||-|..+ |+.+
T Consensus 71 ~p~~~~~i~~~~~~~~iPILGIClG~Ql-La~a 102 (536)
T PLN02347 71 APTVPEGFFDYCRERGVPVLGICYGMQL-IVQK 102 (536)
T ss_pred CchhhHHHHHHHHhcCCcEEEECHHHHH-HHHH
Confidence 22222 2333334578999999999877 6653
No 157
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.71 E-value=0.085 Score=43.19 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHhhhcCHHHHHHHHHHHhcCC
Q 019238 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESNR 256 (344)
Q Consensus 178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~l~~~~~l~~~l~~~~~~~k 256 (344)
...+.|++.|++++.+..... . .....+.+ .+.|+|++.||... .....++..+.+.|++.+++|+
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~ 70 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG 70 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence 467889999998877666542 1 01123333 56899999999421 1123455668999999999999
Q ss_pred cEEEEcchhhhhhhhc
Q 019238 257 PYGAICASPALVLEPH 272 (344)
Q Consensus 257 ~I~aic~G~~~lLa~a 272 (344)
++++..+|+.+ +...
T Consensus 71 vi~G~SAGA~i-~~~~ 85 (154)
T PF03575_consen 71 VIIGTSAGAMI-LGPS 85 (154)
T ss_dssp EEEEETHHHHC-TSSB
T ss_pred EEEEEChHHhh-ccCc
Confidence 99999999644 5443
No 158
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.68 E-value=0.41 Score=41.30 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCeEEEEeCCCcchhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hHh
Q 019238 160 SPQILVPIANGSEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~~ 237 (344)
..||+++-.......+ .....+.|++.|++...+.... . -......+.+ .+.|+|+++||... ...
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~--------~~~~~~~~~l--~~ad~I~~~GG~~~~~~~ 96 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T--------ANDPDVVARL--LEADGIFVGGGNQLRLLS 96 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C--------CCCHHHHHHH--hhCCEEEEcCCcHHHHHH
Confidence 4678887766544333 3456788888888766544322 0 0001112233 67899999999421 111
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
......+.+.|++.+.+|.++++.|.|+.+ +...
T Consensus 97 ~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~-~~~~ 130 (210)
T cd03129 97 VLRETPLLDAILKRVARGVVIGGTSAGAAV-MGET 130 (210)
T ss_pred HHHhCChHHHHHHHHHcCCeEEEcCHHHHH-hhhc
Confidence 233334666667777799999999999755 7663
No 159
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=93.55 E-value=0.19 Score=49.88 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=57.2
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCe-EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK 243 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~-v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~ 243 (344)
||+-|.++..-.. +.+.|++.|.+ +.++.+..- .+++....++|.||+.||...+.+ +..
T Consensus 2 il~idn~dsft~n-l~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~ 62 (534)
T PRK14607 2 IILIDNYDSFTYN-IYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI 62 (534)
T ss_pred EEEEECchhHHHH-HHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence 4566666665544 78888888875 555444321 133333356899999999765543 334
Q ss_pred HHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 244 LVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 244 l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
..++++.+ ..++||.+||-|..+ |+.+
T Consensus 63 ~~~li~~~-~~~~PvLGIClG~Ql-La~a 89 (534)
T PRK14607 63 SVEVIRHF-SGKVPILGVCLGHQA-IGYA 89 (534)
T ss_pred cHHHHHHh-hcCCCEEEEcHHHHH-HHHH
Confidence 56777764 678999999999876 6543
No 160
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=93.52 E-value=0.075 Score=45.78 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+.+.++|+++.++++++.+||.|.. +|++.
T Consensus 59 ~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 59 RGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred cChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 3578899999999999999999996 99986
No 161
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=93.49 E-value=0.37 Score=47.69 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=55.7
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
||+-|.++... ..+.+.|+..|+++.++..+- + .+..+++....++|.||+-||.+.+.+....
T Consensus 4 iLiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~--- 67 (531)
T PRK09522 4 ILLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM--- 67 (531)
T ss_pred EEEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC---
Confidence 34555555544 347788899998888877542 1 1123444433467899999986655432222
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
.++.+....++||.+||-|..+ |+.+
T Consensus 68 -~~i~~~~~~~iPILGIClG~Ql-La~a 93 (531)
T PRK09522 68 -PELLTRLRGKLPIIGICLGHQA-IVEA 93 (531)
T ss_pred -HHHHHHHhcCCCEEEEcHHHHH-HHHh
Confidence 2333334568999999999877 6653
No 162
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=93.39 E-value=0.37 Score=43.51 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---hhcCHHHHHHHHHHHhc
Q 019238 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQKES 254 (344)
Q Consensus 178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---l~~~~~l~~~l~~~~~~ 254 (344)
...+.+.++|.++..+-.+.. ...+++. ...+|.|++|||...... ......++++..+..++
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~ 89 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA 89 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence 356777788887665444321 1123331 157899999999432221 11223344444444444
Q ss_pred C--CcEEEEcchhhhhhhh
Q 019238 255 N--RPYGAICASPALVLEP 271 (344)
Q Consensus 255 ~--k~I~aic~G~~~lLa~ 271 (344)
| .||.++|-|..+ |+.
T Consensus 90 g~~~Pv~GiClG~Ql-L~~ 107 (273)
T cd01747 90 GDYFPVWGTCLGFEL-LTY 107 (273)
T ss_pred CCCCcEEEEcHHHHH-HHH
Confidence 4 799999999755 544
No 163
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=93.32 E-value=0.15 Score=43.03 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=46.9
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchh-hhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV 82 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (344)
.+.|++.++++..+++.. . +++++-. ||... ......+..+.++|+++.++|+++.+||.
T Consensus 14 ~~~l~~~g~~v~~v~~~~--~--------------l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~ 77 (183)
T cd01749 14 IRALERLGVEVIEVRTPE--D--------------LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCA 77 (183)
T ss_pred HHHHHHCCCeEEEECCHH--H--------------hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECH
Confidence 367888888888887742 1 2222211 54222 12223445678999999999999999999
Q ss_pred hHHHHHHHcCC
Q 019238 83 FLAVALGSWGL 93 (344)
Q Consensus 83 g~~~~La~aGl 93 (344)
|.. +|+++--
T Consensus 78 G~q-lL~~~~~ 87 (183)
T cd01749 78 GLI-LLAKEVE 87 (183)
T ss_pred HHH-HHHHHhc
Confidence 995 8887654
No 164
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=93.13 E-value=0.33 Score=44.70 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCc
Q 019238 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (344)
Q Consensus 178 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~ 257 (344)
.++..|...|+++.++..+- +.+++...++|.|++.-|.+.+.. -+..++.|++.....+|
T Consensus 192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~~---~~~~i~~ik~l~~~~iP 252 (368)
T COG0505 192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPAP---LDYAIETIKELLGTKIP 252 (368)
T ss_pred HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChhH---HHHHHHHHHHHhccCCC
Confidence 45677778888887765543 356665578999999988766533 45678899999998889
Q ss_pred EEEEcchhhhhhhhc
Q 019238 258 YGAICASPALVLEPH 272 (344)
Q Consensus 258 I~aic~G~~~lLa~a 272 (344)
|++||-|-.+ ||.|
T Consensus 253 ifGICLGHQl-lalA 266 (368)
T COG0505 253 IFGICLGHQL-LALA 266 (368)
T ss_pred eEEEcHHHHH-HHHh
Confidence 9999999877 7654
No 165
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=93.11 E-value=0.14 Score=45.15 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~l 268 (344)
.++|.|+++||.... ..+..++++++..+.++|+.+||.|..++
T Consensus 54 ~~~dgivl~GG~~~~----~~~~~~~~i~~~~~~~~PvlGIClG~Q~l 97 (235)
T cd01746 54 KGADGILVPGGFGIR----GVEGKILAIKYARENNIPFLGICLGMQLA 97 (235)
T ss_pred ccCCEEEECCCCCCc----chhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence 679999999995422 23456788999999999999999998663
No 166
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=92.97 E-value=0.14 Score=45.78 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=36.8
Q ss_pred CCccEEEEcCCccchH-------------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 221 LSYDLIVLPGGLGGAQ-------------AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 221 ~~~D~liipGG~~~~~-------------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+.+|.|+++||..+.+ ...++...+++|+.++++++||.+||-|..+ |+.+
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Ql-lnva 123 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQE-LVVA 123 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHH-HHHH
Confidence 4589999999832221 1112345679999999999999999999877 5543
No 167
>PRK00074 guaA GMP synthase; Reviewed
Probab=92.88 E-value=0.53 Score=46.50 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
+.+|+|+=+ |..-. ..+...+++.|...+++..+.. .+++...++|.||++||...... .
T Consensus 3 ~~~i~vlD~-Gsq~~--~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~ 62 (511)
T PRK00074 3 HDKILILDF-GSQYT--QLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E 62 (511)
T ss_pred CCEEEEEEC-CCCcH--HHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence 356776666 33332 3456888888987777654431 23332235699999999543222 1
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+.+ .+...+.++||.+||.|..+ |+.
T Consensus 63 ~~p~~---~~~i~~~~~PvLGIC~G~Ql-La~ 90 (511)
T PRK00074 63 GAPRA---DPEIFELGVPVLGICYGMQL-MAH 90 (511)
T ss_pred CCccc---cHHHHhCCCCEEEECHHHHH-HHH
Confidence 12222 24456679999999999776 654
No 168
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=92.87 E-value=0.51 Score=43.06 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCCeEEEEeC-CCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceee-eccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIA-NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~-~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
++.||+||=. |.-...| ..+...|.... ++++++....- ..+ ++....-.--.+++++....||++||.|....
T Consensus 34 rpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e 111 (302)
T PRK05368 34 RPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE 111 (302)
T ss_pred CCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence 4688888854 4445555 44566665544 44666655431 111 11111111123567776688999999997432
Q ss_pred hHhhhcC---HHHHHHHHHHHhcCCcEEEEcchhhhhh
Q 019238 235 AQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVL 269 (344)
Q Consensus 235 ~~~l~~~---~~l~~~l~~~~~~~k~I~aic~G~~~lL 269 (344)
.....+. +++.++++...++.+++.+||-|..+++
T Consensus 112 ~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a 149 (302)
T PRK05368 112 QLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAAL 149 (302)
T ss_pred CccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 1111111 1234444444456899999999977644
No 169
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=92.67 E-value=0.52 Score=40.31 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCeEEEEeCCCcchhH---HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238 160 SPQILVPIANGSEEME---AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e---~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
.++|+++-+-+.+... +....++|...|+.+.-++.... + ...+++. ..+-|+|+|.||- .-.
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~-----------~~~Ie~~-l~~~d~IyVgGGN-TF~ 97 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-P-----------LAAIENK-LMKADIIYVGGGN-TFN 97 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-C-----------HHHHHHh-hhhccEEEECCch-HHH
Confidence 4688888776554333 34667889999998876666542 1 1122221 1347999999982 222
Q ss_pred h--hhcCHHHHHHHHHHHhcCCcEEEEcchhh
Q 019238 237 A--FAKSKKLVNMLKKQKESNRPYGAICASPA 266 (344)
Q Consensus 237 ~--l~~~~~l~~~l~~~~~~~k~I~aic~G~~ 266 (344)
- ......+.+.|++..++|.+.++..+|+.
T Consensus 98 LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ 129 (224)
T COG3340 98 LLQELKETGLDDIIRERVKAGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHhCcHHHHHHHHHcCCceEEeccCce
Confidence 2 34566789999999999999999999963
No 170
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=92.61 E-value=0.17 Score=43.28 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=45.1
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CC-chhhh--cccCChHHHHHHHHHhhCCCEEEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CG-MPGAT--NLKESEVLESIVKKQASDGRLYAA 79 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG-~~~~~--~~~~~~~~~~~l~~~~~~g~~i~a 79 (344)
..+.|++.|++++++.... . +++.+.. || .+... .+ ..+.+.++++++.++++++.+
T Consensus 14 ~~~~l~~~g~~v~v~~~~~--~--------------l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilG 76 (198)
T cd01748 14 VANALERLGAEVIITSDPE--E--------------ILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLG 76 (198)
T ss_pred HHHHHHHCCCeEEEEcChH--H--------------hccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEE
Confidence 4567888999999887431 1 1222111 32 11111 12 234578999999999999999
Q ss_pred EchhHHHHHHHc
Q 019238 80 ICVFLAVALGSW 91 (344)
Q Consensus 80 iC~g~~~~La~a 91 (344)
||.|.. +|+++
T Consensus 77 iC~G~q-~l~~~ 87 (198)
T cd01748 77 ICLGMQ-LLFES 87 (198)
T ss_pred ECHHHH-Hhccc
Confidence 999995 99988
No 171
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=92.05 E-value=0.52 Score=50.95 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHhCCCeEEEEEecCC---c----------ceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhC
Q 019238 7 IDVLRRSGADVVVASVEKQ---L----------RVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD 73 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~---~----------~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~ 73 (344)
+..|+++||++.++....- . ......++.+.--.+..|... ||......+..++.+.+-+++|.++
T Consensus 995 a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~-~~~~~~aa~~~n~~~~~~~~~f~~~ 1073 (1239)
T TIGR01857 995 AKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPD-GSAKFIAAILRNPKVRVAIDSFLAR 1073 (1239)
T ss_pred HHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccc-hhHHHHHHHhhChHHHHHHHHHHhC
Confidence 4557789999888886631 0 112222333333333333322 2111223455688999999999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCC
Q 019238 74 GRLYAAICVFLAVALGSWGLLKG 96 (344)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g 96 (344)
++++.+||.|- -+|.+.|||-+
T Consensus 1074 d~~~LGICNGf-Q~L~~lGLlP~ 1095 (1239)
T TIGR01857 1074 DGLILGICNGF-QALVKSGLLPY 1095 (1239)
T ss_pred CCcEEEechHH-HHHHHcCCCcC
Confidence 99999999999 49999999964
No 172
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=92.04 E-value=0.87 Score=40.51 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=61.8
Q ss_pred CCeEEEEeCCCcchhH-HHHHHHHHHhcCC-eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc-hH
Q 019238 160 SPQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQ 236 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~-~~ 236 (344)
..||+|+..-.-+..+ .....+.|++.|+ ++.++..... .-. ..+...+.+ .+.|+|++.||... ..
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~~a-------~~~~~~~~l--~~ad~I~~~GGnq~~l~ 97 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-EDA-------SDENAIALL--SNATGIFFTGGDQLRIT 97 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-HHc-------cCHHHHHHH--hhCCEEEEeCCCHHHHH
Confidence 3688888765444434 3356678888897 4665555321 000 000112223 56899999999421 12
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
.......+.+.|++.+++|.++++..+|+++
T Consensus 98 ~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i 128 (250)
T TIGR02069 98 SLLGDTPLLDRLRKRVHEGIILGGTSAGAAV 128 (250)
T ss_pred HHHcCCcHHHHHHHHHHcCCeEEEccHHHHh
Confidence 2346667888999999999999999999753
No 173
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=92.00 E-value=2.3 Score=40.98 Aligned_cols=184 Identities=16% Similarity=0.176 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHh-hC--CCEEEEEchhHHHHHHHcCCCCCCC--------------------------------------
Q 019238 60 SEVLESIVKKQA-SD--GRLYAAICVFLAVALGSWGLLKGLK-------------------------------------- 98 (344)
Q Consensus 60 ~~~~~~~l~~~~-~~--g~~i~aiC~g~~~~La~aGll~g~~-------------------------------------- 98 (344)
+-.+++-+|++. +. ...+..-|+-. -.++.+|=++.|.
T Consensus 149 slpFlEAiRQ~~~e~g~~n~~fiH~tlv-pyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc 227 (533)
T COG0504 149 SLPFLEAIRQLRLELGRENVLFIHVTLV-PYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFC 227 (533)
T ss_pred ccHHHHHHHHHHhhhCcccEEEEEEecc-eeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhc
Confidence 445566666655 22 33555556766 3688888888887
Q ss_pred ---CCCEEcCCCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeeecC---CCCeEEEEe-CCCc
Q 019238 99 ---DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD---NSPQILVPI-ANGS 171 (344)
Q Consensus 99 ---dg~~iT~~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~v~ill-~~g~ 171 (344)
...+|++-...+..+.-+.+-++-. .+.+.+.+.++. .+..+.+...+..... ...+|+++- |-..
T Consensus 228 ~V~~~~Vi~~~Dv~siY~vPl~l~~qgl----~~~i~~~l~l~~---~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l 300 (533)
T COG0504 228 NVPEEAVISAPDVESIYEVPLLLEKQGL----DDYILERLNLNA---PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVEL 300 (533)
T ss_pred CCCHHHeEecccHHHHHHhHHHHHHcch----HHHHHHHhCCCC---CCcchHHHHHHHHHhcCCCCceEEEEEECCcCc
Confidence 3457777777666666555555433 445555555531 1111111111110011 124466543 2222
Q ss_pred chhHHHHHHHHHHhcC----CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238 172 EEMEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (344)
Q Consensus 172 ~~~e~~~~~~~l~~~~----~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~ 247 (344)
.+ .+..+.+.|.-+| .++.+.-.+.. .+. .+ ..+... ..+|.++||||++. +.-+--+.-
T Consensus 301 ~D-aY~Sv~EAL~hag~~~~~~v~i~wIdse-~le--------~~-~~~~~~-~~~dgIlVPGGFG~----RG~eGkI~A 364 (533)
T COG0504 301 PD-AYKSVIEALKHAGIALGVKVNIKWIDSE-DLE--------EE-NAAELE-KLVDGILVPGGFGY----RGVEGKIAA 364 (533)
T ss_pred hh-HHHHHHHHHHhhhhhcCCceeeEEEccc-ccc--------cc-chhhhh-hcCCEEEeCCCCCc----CchHHHHHH
Confidence 22 4556788888876 33333333321 111 10 011111 12899999999762 234455778
Q ss_pred HHHHHhcCCcEEEEcchhhh
Q 019238 248 LKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 248 l~~~~~~~k~I~aic~G~~~ 267 (344)
++.+.+++.|..+||-|..+
T Consensus 365 i~yAREn~iP~lGIClGmQ~ 384 (533)
T COG0504 365 IRYARENNIPFLGICLGMQL 384 (533)
T ss_pred HHHHHhcCCCEEEEchhHHH
Confidence 88888999999999999654
No 174
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=91.76 E-value=0.54 Score=51.20 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHhCCCeEEEEEecC----CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEK----QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~----~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (344)
+..|.++||++..|.... ........|+.+.--.+..|... .|-.....+..++.+++.+++|. ++++++.+||
T Consensus 1055 ~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~-sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGIC 1133 (1307)
T PLN03206 1055 AAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLD-SAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVC 1133 (1307)
T ss_pred HHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccc-hHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEc
Confidence 455788999988887652 11122334444443333333332 22111334567899999999999 5599999999
Q ss_pred hhHHHHHHHcCCCCCCC
Q 019238 82 VFLAVALGSWGLLKGLK 98 (344)
Q Consensus 82 ~g~~~~La~aGll~g~~ 98 (344)
.|- -+|.+.|||-|-.
T Consensus 1134 NGf-QiL~~lgllPg~~ 1149 (1307)
T PLN03206 1134 NGC-QLMALLGWVPGPQ 1149 (1307)
T ss_pred HHH-HHHHHcCCCCCCc
Confidence 999 5999999997543
No 175
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=91.72 E-value=0.54 Score=39.68 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+.+.++|++..++++++.+||.|.. +|+.+
T Consensus 68 ~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 68 KKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred HHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 6789999999999999999999995 88875
No 176
>PRK07053 glutamine amidotransferase; Provisional
Probab=91.71 E-value=0.83 Score=40.22 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=46.8
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhc---ccCChHHHHHHHHHhhCCCEEEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYAA 79 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~a 79 (344)
..+.|++.|++++++-+..++ .. .++ +.+.+.. ||..+..+ ..--..+.++|+++.+.++++.+
T Consensus 19 i~~~L~~~g~~~~v~~~~~~~-~~-------~~~--~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlG 88 (234)
T PRK07053 19 FEQVLGARGYRVRYVDVGVDD-LE-------TLD--ALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLG 88 (234)
T ss_pred HHHHHHHCCCeEEEEecCCCc-cC-------CCC--ccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEE
Confidence 356678888888888765321 10 001 1111111 55222221 11224778999999999999999
Q ss_pred EchhHHHHHHHcC
Q 019238 80 ICVFLAVALGSWG 92 (344)
Q Consensus 80 iC~g~~~~La~aG 92 (344)
||.|.- +|+++-
T Consensus 89 IC~G~Q-lla~al 100 (234)
T PRK07053 89 ICLGAQ-LIARAL 100 (234)
T ss_pred ECccHH-HHHHHc
Confidence 999995 898774
No 177
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=91.64 E-value=0.32 Score=46.13 Aligned_cols=71 Identities=27% Similarity=0.353 Sum_probs=51.8
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCcccccccc-C--CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD-A--CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~-~--gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
.+.|++.|.++..+||=.++.+- ++++. | ||+|- ...|.+|+..++.|+++++.|++|-+=|
T Consensus 264 l~~Lr~~GAelv~FSPL~D~~lP-------------~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaEC 330 (451)
T COG1797 264 LELLREAGAELVFFSPLADEELP-------------PDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAEC 330 (451)
T ss_pred HHHHHHCCCEEEEeCCcCCCCCC-------------CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEec
Confidence 35678888899988876432211 12222 2 67653 5567889999999999999999999999
Q ss_pred hhHHHHHHHc
Q 019238 82 VFLAVALGSW 91 (344)
Q Consensus 82 ~g~~~~La~a 91 (344)
.|-+ .|.+.
T Consensus 331 GGlM-YL~~~ 339 (451)
T COG1797 331 GGLM-YLGES 339 (451)
T ss_pred ccce-eehhh
Confidence 9996 66643
No 178
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=91.58 E-value=0.35 Score=42.82 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=46.6
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchh-hhcccCChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (344)
.+.|++.|.++.+++... .+....|+-+. ||+.. +..+.++..+.+.|+++.++|+++.+||.|-.
T Consensus 17 ~~aL~~lG~ev~~v~~~~--~L~~~DgLILP-----------GGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq 83 (248)
T PLN02832 17 IAALRRLGVEAVEVRKPE--QLEGVSGLIIP-----------GGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLI 83 (248)
T ss_pred HHHHHHCCCcEEEeCCHH--HhccCCEEEeC-----------CCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHH
Confidence 355666777666666531 22222333222 55432 33344445688899999999999999999994
Q ss_pred HHHHHcCC
Q 019238 86 VALGSWGL 93 (344)
Q Consensus 86 ~~La~aGl 93 (344)
+|++...
T Consensus 84 -lLa~~~~ 90 (248)
T PLN02832 84 -FLAERAV 90 (248)
T ss_pred -HHHHHhc
Confidence 9988753
No 179
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=91.43 E-value=0.48 Score=46.04 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCchh--hhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 49 CGMPG--ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 49 gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
||.+. ...+..+..+.+.|+++.++|.++.++|.|-. +|++.
T Consensus 294 GG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~ 337 (449)
T TIGR00379 294 GGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS 337 (449)
T ss_pred CcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence 66542 23455678889999999999999999999995 88765
No 180
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=91.27 E-value=1.3 Score=38.45 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=61.8
Q ss_pred CCeEEEEeCCCcchhHHH-HHHHHHHhcCCe-EEEEEeCCCceeeeccceeeeecc-ccccccCCCccEEEEcCCccc-h
Q 019238 160 SPQILVPIANGSEEMEAV-IIIDILRRAKAN-VVVASVADKLEILASCQVKLVADM-LIDEAAKLSYDLIVLPGGLGG-A 235 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~-~~~~~l~~~~~~-v~~~s~~~~~~v~~~~g~~v~~~~-~~~~~~~~~~D~liipGG~~~-~ 235 (344)
..||+++-.......+.. ...+.|++.|++ ++++..... . -..+. ..+.+ .+.|+|++.||... .
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~l--~~ad~I~~~GG~~~~~ 97 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVARL--RDADGIFFTGGDQLRI 97 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHHH--HhCCEEEEeCCcHHHH
Confidence 468888877655444433 456677888864 555444321 1 00011 12223 67899999999421 1
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
........+.+.|++.+++|.++++..+|+.+ +.
T Consensus 98 ~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i-~~ 131 (217)
T cd03145 98 TSALGGTPLLDALRKVYRGGVVIGGTSAGAAV-MS 131 (217)
T ss_pred HHHHcCChHHHHHHHHHHcCCEEEEccHHHHh-hh
Confidence 12345567888999999999999999999654 44
No 181
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=91.14 E-value=0.69 Score=39.62 Aligned_cols=50 Identities=34% Similarity=0.407 Sum_probs=36.0
Q ss_pred CCccEEEEcCCccchHhh-hcC-HHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 221 LSYDLIVLPGGLGGAQAF-AKS-KKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l-~~~-~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..||++++-||..-.+.+ .++ ..-.+-|++..+.++|+.+||.|..+ |.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql-LG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL-LGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh-ccc
Confidence 479999998874222222 233 34457788999999999999999876 763
No 182
>PRK06186 hypothetical protein; Validated
Probab=91.11 E-value=0.31 Score=42.57 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
.++|.|+||||++. +.-+--+..++.+.++++|+.+||-|..+
T Consensus 52 ~~~dgilvpgGfg~----rg~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 52 AGFDGIWCVPGSPY----RNDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred hhCCeeEeCCCCCc----ccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 67899999999752 23445677899999999999999999763
No 183
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=90.69 E-value=0.99 Score=37.82 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
++.|++.|+++.++..+.. . .. + ...+.+.- ||..... +.+...++++++.++++++.+||.|
T Consensus 13 ~~~l~~~G~~~~~~~~~~~-~-~~-----~----~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G 78 (178)
T cd01744 13 LRELLKRGCEVTVVPYNTD-A-EE-----I----LKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLG 78 (178)
T ss_pred HHHHHHCCCeEEEEECCCC-H-HH-----H----hhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHH
Confidence 4566778888888876531 1 00 0 00111111 5532222 2467888999999999999999999
Q ss_pred HHHHHHHc
Q 019238 84 LAVALGSW 91 (344)
Q Consensus 84 ~~~~La~a 91 (344)
.. +|+.+
T Consensus 79 ~Q-~l~~~ 85 (178)
T cd01744 79 HQ-LLALA 85 (178)
T ss_pred HH-HHHHH
Confidence 96 77753
No 184
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=90.53 E-value=1.4 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhc----CCcEEEEcchhhhhhhhc
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKES----NRPYGAICASPALVLEPH 272 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~----~k~I~aic~G~~~lLa~a 272 (344)
.+||.|||.||.+.+. ++.-..++++..+. .+||.+||-|..+ |+.+
T Consensus 52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~Ql-La~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQS-LCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHH-HHhh
Confidence 5799999988865432 22223445555543 4999999999776 6543
No 185
>PHA03366 FGAM-synthase; Provisional
Probab=90.44 E-value=0.8 Score=50.15 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=59.2
Q ss_pred hHHHHHhCCCeEEEEEecC---CcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238 6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~---~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (344)
.+..|.++||++..|.... +.......|+.+.--.+..|... +|......+..|+.+++.+++|+ ++++.+.+||
T Consensus 1045 ~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~-~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366 1045 LLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYT-GARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred HHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCccccc-HHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence 3456788999999888663 11122233444433333333322 22223455667899999999999 5699999999
Q ss_pred h-hHHHHHHHcCCCC
Q 019238 82 V-FLAVALGSWGLLK 95 (344)
Q Consensus 82 ~-g~~~~La~aGll~ 95 (344)
. |- -+|.+.|+|.
T Consensus 1124 N~G~-Q~L~~lgll~ 1137 (1304)
T PHA03366 1124 ELGC-QILFALKAVG 1137 (1304)
T ss_pred cHHH-HHHHHcCCcc
Confidence 9 99 5999999993
No 186
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=90.28 E-value=2 Score=36.44 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCeEEEEeCCCcch---hHHHH----HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238 160 SPQILVPIANGSEE---MEAVI----IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 160 ~~~v~ill~~g~~~---~e~~~----~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
.+|+++++.+--+. .-+.. +...|...|-++++.-+-.| .-|+ .++. +.||.++|.|..
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~--~~Dl--~ky~gfvIsGS~ 69 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQ--EEDL--EKYDGFVISGSK 69 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCC--hhhh--hhhceEEEeCCc
Confidence 47888888762211 11222 33445555677776665543 1122 2344 789999999874
Q ss_pred cchHhhhcC---HHHHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 233 GGAQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 233 ~~~~~l~~~---~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
... ..+. .+|.+++++.....+.|.+||-|-.+ +|++
T Consensus 70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQi-iara 109 (245)
T KOG3179|consen 70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQI-IARA 109 (245)
T ss_pred ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHHH-HHHh
Confidence 322 1122 25778888888888999999999887 6543
No 187
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.52 E-value=0.46 Score=38.53 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCchhhhccc----------CChHHHHHHHHHhhCCCEEEEEchhHHHHHHH
Q 019238 49 CGMPGATNLK----------ESEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (344)
Q Consensus 49 gG~~~~~~~~----------~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (344)
||++...++. -+|++....+.|++.||+++-||-+|. .|.+
T Consensus 93 GGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk 143 (217)
T COG3155 93 GGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK 143 (217)
T ss_pred CccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence 8888777663 379999999999999999999999995 7764
No 188
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=89.44 E-value=0.77 Score=27.87 Aligned_cols=19 Identities=16% Similarity=-0.069 Sum_probs=15.1
Q ss_pred CCcchhHHHHHHHHHHhcC
Q 019238 169 NGSEEMEAVIIIDILRRAK 187 (344)
Q Consensus 169 ~g~~~~e~~~~~~~l~~~~ 187 (344)
-|++..|+..|+++|..+|
T Consensus 20 TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 20 TGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp --B-HHHHHHHHHHHHHTT
T ss_pred ceeccHHHhhHHHHHHHCc
Confidence 4899999999999999876
No 189
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=89.10 E-value=0.63 Score=40.59 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=35.5
Q ss_pred CCccEEEEcCCccchH---------------hhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 221 LSYDLIVLPGGLGGAQ---------------AFAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 221 ~~~D~liipGG~~~~~---------------~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
+..|.|+++||. +.+ +..+|.--+.+|+++.++++||.+||-|..+
T Consensus 59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql 119 (243)
T COG2071 59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL 119 (243)
T ss_pred hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 567999999993 111 1124455688999999999999999999876
No 190
>PRK00784 cobyric acid synthase; Provisional
Probab=88.19 E-value=0.82 Score=44.93 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL 93 (344)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl 93 (344)
++..+.+.|+++.++|+++.++|.|-. +|++.-.
T Consensus 310 ~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~~~ 343 (488)
T PRK00784 310 RESGWDEAIRAHARRGGPVLGICGGYQ-MLGRRIA 343 (488)
T ss_pred HHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhhcc
Confidence 456688999999999999999999995 8887653
No 191
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=88.08 E-value=1.1 Score=40.83 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC-C-ccchHhhhcCHHHHHHHHHHH
Q 019238 175 EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-G-LGGAQAFAKSKKLVNMLKKQK 252 (344)
Q Consensus 175 e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG-G-~~~~~~l~~~~~l~~~l~~~~ 252 (344)
.+-.+...++..||++..+-.. .++ ...|-||.|| | ++...+......+.+-|++..
T Consensus 13 n~~si~nal~hlg~~i~~v~~P-------------------~DI--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yi 71 (541)
T KOG0623|consen 13 NVRSIRNALRHLGFSIKDVQTP-------------------GDI--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYI 71 (541)
T ss_pred cHHHHHHHHHhcCceeeeccCc-------------------hhh--ccCceEeecCcccchHHHHHHhhhhhHHHHHHHH
Confidence 3445556666667766544332 223 4568999998 3 333334456777889999999
Q ss_pred hcCCcEEEEcchhhhhh
Q 019238 253 ESNRPYGAICASPALVL 269 (344)
Q Consensus 253 ~~~k~I~aic~G~~~lL 269 (344)
..+|++.+||-|...++
T Consensus 72 esgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 72 ESGKPFMGICVGLQALF 88 (541)
T ss_pred hcCCCeEeehhhHHHHh
Confidence 99999999999976533
No 192
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=87.83 E-value=0.6 Score=38.37 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCchhh--hcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238 49 CGMPGA--TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL 93 (344)
Q Consensus 49 gG~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl 93 (344)
||.+-. ..+.++..+.+.|+++.++|.+|.++|.|-. +|.+.=.
T Consensus 15 Gg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~~i~ 60 (158)
T PF07685_consen 15 GGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGESII 60 (158)
T ss_pred CCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHHHHh
Confidence 565433 2345678899999999999999999999995 8886643
No 193
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=86.84 E-value=1.6 Score=47.61 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=56.0
Q ss_pred hHHHHHhCCCeEEEEEecCC---cceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238 6 TIDVLRRSGADVVVASVEKQ---LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~---~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (344)
.+..|.++||++..|....- .......|+.+.--....|..- +|-.....+..|+.+.+.+++|+ ++++.+.+||
T Consensus 946 ~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lg-sg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiC 1024 (1202)
T TIGR01739 946 LLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEV-GARALAAALLRNQAFLRDLLTFLNRPDTFSLGFG 1024 (1202)
T ss_pred HHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccch-HHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeC
Confidence 34567889999998887641 1111222332211111111111 22222455667899999999999 5699999999
Q ss_pred h-hHHHHHHHcCCCC
Q 019238 82 V-FLAVALGSWGLLK 95 (344)
Q Consensus 82 ~-g~~~~La~aGll~ 95 (344)
. |- -+|.+.|++.
T Consensus 1025 N~G~-Q~L~~lg~l~ 1038 (1202)
T TIGR01739 1025 ELGC-QLLLALNIVG 1038 (1202)
T ss_pred cHHH-HHHHHcCCCc
Confidence 9 99 5999999994
No 194
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=86.29 E-value=2.8 Score=44.05 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=55.4
Q ss_pred EEEeCCCcchhHHHHHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeecccccccc-----CCCccEEEEcCCccchHh
Q 019238 164 LVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAA-----KLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 164 ~ill~~g~~~~e~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~-----~~~~D~liipGG~~~~~~ 237 (344)
-||+-|+++...+. ++..|+.. |.++.++-.+. . +++++. ...||.|||-+|.+.+..
T Consensus 83 ~iLlIDnyDSfTyN-L~~~L~~~~g~~~~Vv~nd~--~-------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~ 146 (918)
T PLN02889 83 RTLLIDNYDSYTYN-IYQELSIVNGVPPVVVRNDE--W-------------TWEEVYHYLYEEKAFDNIVISPGPGSPTC 146 (918)
T ss_pred eEEEEeCCCchHHH-HHHHHHHhcCCCEEEEeCCC--C-------------CHHHHHhhhhcccCCCEEEECCCCCCccc
Confidence 36777888777655 56777776 77766655542 1 233321 146899999988665433
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
..+-....++|.+. .+.||.+||-|... |+.
T Consensus 147 ~~d~Gi~~~~i~~~--~~iPILGICLGhQ~-i~~ 177 (918)
T PLN02889 147 PADIGICLRLLLEC--RDIPILGVCLGHQA-LGY 177 (918)
T ss_pred hHHHHHHHHHHHHh--CCCcEEEEcHHHHH-HHH
Confidence 22222335566543 46999999999776 553
No 195
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=86.23 E-value=1.9 Score=47.42 Aligned_cols=86 Identities=9% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHHHHhCCCeEEEEEecCC----cceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEKQ----LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~----~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (344)
+..|+++||++..+....- .......|+.+.--.+..|... .|-.....+..|+.+++.+++|. ++++++.+||
T Consensus 1053 ~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lg-sg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiC 1131 (1290)
T PRK05297 1053 AAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLG-AGEGWAKSILFNPRLRDQFEAFFARPDTFALGVC 1131 (1290)
T ss_pred HHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccch-HHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEc
Confidence 4557889999888886531 0122223333332222222211 11112344567899999999977 8899999999
Q ss_pred hhHHHHHHHcC-CC
Q 019238 82 VFLAVALGSWG-LL 94 (344)
Q Consensus 82 ~g~~~~La~aG-ll 94 (344)
.|- -+|.+.| ++
T Consensus 1132 NGf-Q~L~~lg~l~ 1144 (1290)
T PRK05297 1132 NGC-QMMSNLKEII 1144 (1290)
T ss_pred HHH-HHHHHhCCcc
Confidence 999 5999998 54
No 196
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=85.61 E-value=1.8 Score=47.45 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=55.3
Q ss_pred HHHHHhCCCeEEEEEecC---Cc-ceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHh-hCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEK---QL-RVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~---~~-~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (344)
+..|.++||++..|.... +. ......|+.+.--.+..|... .|-.....+..++.+++.+++|+ ++++++.+||
T Consensus 1073 ~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lg-sg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiC 1151 (1310)
T TIGR01735 1073 AAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLG-AGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVC 1151 (1310)
T ss_pred HHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchh-HHHHHHHHHHhChHHHHHHHHHHhCCCceEEEec
Confidence 445778899888888653 10 011122333322222222211 11112334567899999999999 8999999999
Q ss_pred hhHHHHHH-HcCCCCC
Q 019238 82 VFLAVALG-SWGLLKG 96 (344)
Q Consensus 82 ~g~~~~La-~aGll~g 96 (344)
.|-- +|. ..|||-|
T Consensus 1152 NGfQ-~L~~~~gllp~ 1166 (1310)
T TIGR01735 1152 NGCQ-MLSNLLEWIPG 1166 (1310)
T ss_pred HHHH-HHHHHhCcCCC
Confidence 9994 999 9999964
No 197
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=85.42 E-value=4.4 Score=39.26 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCCCcHHHHHHHHHHHHcChhHHHHHhhcccccccCCCcceeeec--cceeee--c-CCCCeEEEEeCC---CcchhHHH
Q 019238 106 RGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEF--NPVQWT--F-DNSPQILVPIAN---GSEEMEAV 177 (344)
Q Consensus 106 ~g~~~~~~~~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~--~~~~~~--~-~~~~~v~ill~~---g~~~~e~~ 177 (344)
+|=.+-++=++..+|++.|... +..-|.........+. +..... . .+..+|+|+-+| +|.+.+
T Consensus 199 RGd~~ll~~gik~Le~~tg~~v-------lGv~P~~~~~~~p~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~d-- 269 (486)
T COG1492 199 RGDESLLDPGLKWLEELTGVPV-------LGVLPYLKDALRPAEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFD-- 269 (486)
T ss_pred CCCHHHHhhHHHHHHHhhCCee-------EeeccccccccCccccccCchhhcccCCCCceEEEEecCCCccccccch--
Confidence 4555667778888888866532 2221211111110111 111101 1 234688888888 333333
Q ss_pred HHHHHHHhc-CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh--cCHHHHHHHHHHHhc
Q 019238 178 IIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--KSKKLVNMLKKQKES 254 (344)
Q Consensus 178 ~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~--~~~~l~~~l~~~~~~ 254 (344)
.|+.. +.++.++.+.. ++ .+.|++++||-.....++. +..-+-.-|.++.++
T Consensus 270 ----pL~~~~~v~v~~v~~~~-------------------~l--~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~ 324 (486)
T COG1492 270 ----PLRAEPDVRVRFVKPGS-------------------DL--RDADLVILPGSKNTIADLKILREGGMDEKILEYARK 324 (486)
T ss_pred ----hhhcCCCeEEEEeccCC-------------------CC--CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhC
Confidence 22322 55666655543 22 3479999999865444431 222233355556677
Q ss_pred CCcEEEEcchhhhhhhh
Q 019238 255 NRPYGAICASPALVLEP 271 (344)
Q Consensus 255 ~k~I~aic~G~~~lLa~ 271 (344)
+.+|.+||.|-.+ |.+
T Consensus 325 ~~~viGICGG~Qm-LG~ 340 (486)
T COG1492 325 GGDVIGICGGYQM-LGR 340 (486)
T ss_pred CCCEEEEcchHHh-hhh
Confidence 8999999999665 653
No 198
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=85.17 E-value=1.2 Score=37.97 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCCCEEEEEchhHHHHHHHcC
Q 019238 63 LESIVKKQASDGRLYAAICVFLAVALGSWG 92 (344)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (344)
...+++++.+.++++.+||.|.. +|+++.
T Consensus 60 ~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~~ 88 (196)
T TIGR01855 60 LDLFVELVVRLGKPVLGICLGMQ-LLFERS 88 (196)
T ss_pred cHHHHHHHHhCCCCEEEECHHHH-Hhhhcc
Confidence 33455778889999999999995 999984
No 199
>PRK06490 glutamine amidotransferase; Provisional
Probab=84.62 E-value=4.3 Score=35.81 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=45.4
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhc-ccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-LKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~-~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
..+.|++.|++++++.+..+++. |+ .+++.+.. ||.....+ ..-...+++||++..+.++++.+||
T Consensus 24 l~~~l~~~g~~~~v~~~~~~~~~---------p~-~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC 93 (239)
T PRK06490 24 VGQLLQERGYPLDIRRPRLGDPL---------PD-TLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGIC 93 (239)
T ss_pred HHHHHHHCCCceEEEeccCCCCC---------CC-cccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEEC
Confidence 34567778888887765532111 11 12222221 55222211 1112456789999999999999999
Q ss_pred hhHHHHHHHc
Q 019238 82 VFLAVALGSW 91 (344)
Q Consensus 82 ~g~~~~La~a 91 (344)
-|.- +|+.+
T Consensus 94 ~G~Q-lla~a 102 (239)
T PRK06490 94 LGAQ-MLARH 102 (239)
T ss_pred HhHH-HHHHH
Confidence 9995 99987
No 200
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=84.51 E-value=1.5 Score=37.98 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=43.6
Q ss_pred hhHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCC-Cch--hhhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-GMP--GATNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 5 ~~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~g-G~~--~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
...+.|++.|+++.++..+. .+.. +|..+ ..| |.+ ....+++ ..+.+.|+++.++++++.+||
T Consensus 16 sl~~al~~~g~~v~vv~~~~--~l~~-------~d~iI----lPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGIC 81 (210)
T CHL00188 16 SVSRAIQQAGQQPCIINSES--ELAQ-------VHALV----LPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGIC 81 (210)
T ss_pred HHHHHHHHcCCcEEEEcCHH--Hhhh-------CCEEE----ECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEEC
Confidence 34667888899888885431 1111 11100 113 321 1222322 345677888888999999999
Q ss_pred hhHHHHHHHcC
Q 019238 82 VFLAVALGSWG 92 (344)
Q Consensus 82 ~g~~~~La~aG 92 (344)
-|- -+|++..
T Consensus 82 lG~-Qll~~~~ 91 (210)
T CHL00188 82 LGL-HLLFETS 91 (210)
T ss_pred HHH-HHHhhcc
Confidence 999 4998763
No 201
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=84.18 E-value=7.4 Score=31.82 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=52.4
Q ss_pred CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHH
Q 019238 170 GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLK 249 (344)
Q Consensus 170 g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~ 249 (344)
|-.-.=...+..-|+..|+++++...+. ..+.+..+||+++|... .....-++.+.+|++
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~-----------------~~~~~l~~ydavVIgAs---I~~~h~~~~~~~Fv~ 71 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHA-----------------VEEPALEDYDAVVIGAS---IRYGHFHEAVQSFVK 71 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhh-----------------hhccChhhCceEEEecc---hhhhhhHHHHHHHHH
Confidence 4443334456667788888887766543 22234478999999654 233345788999999
Q ss_pred HHHh--cCCcEEEEcchh
Q 019238 250 KQKE--SNRPYGAICASP 265 (344)
Q Consensus 250 ~~~~--~~k~I~aic~G~ 265 (344)
++.. +.+|.+.+|.+.
T Consensus 72 k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 72 KHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHHHhcCCceEEEeeh
Confidence 9875 789999999873
No 202
>PRK06455 riboflavin synthase; Provisional
Probab=84.11 E-value=3.9 Score=33.25 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc--ch
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG--GA 235 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~--~~ 235 (344)
++||+|+...-....-.....+.|.+.+ .++.++.+.|- .-+.+.....+.+ ..||++|..|-.+ ..
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~VG~t~h 71 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGMPGPTEK 71 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecceeccCc
Confidence 4789988876544444578899999944 67777766552 1112222222222 5799999988532 12
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEE
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGA 260 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~a 260 (344)
..+..+.....+.+-....++||+-
T Consensus 72 ~d~Va~~vS~GL~~lsL~t~~PVi~ 96 (155)
T PRK06455 72 DKYCAHEASIGLIMAQLMTNKHIIE 96 (155)
T ss_pred chhHHHHHHHHHHHHHhhhCCCEEE
Confidence 2233334444455555555666553
No 203
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=84.01 E-value=3 Score=35.32 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=44.3
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV 82 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (344)
..+.|++.|++++++..+... ++ .+++.+.. ||..... ..+.+.++|++ .++++++.+||-
T Consensus 17 i~~~l~~~g~~~~v~~~~~~~-----------~~-~l~~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGICl 80 (190)
T PRK06895 17 LVDLIRKLGVPMQVVNVEDLD-----------LD-EVENFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCL 80 (190)
T ss_pred HHHHHHHcCCcEEEEECCccC-----------hh-HhccCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcH
Confidence 456788889999998865311 00 11122111 5532221 24567889986 678999999999
Q ss_pred hHHHHHHHc
Q 019238 83 FLAVALGSW 91 (344)
Q Consensus 83 g~~~~La~a 91 (344)
|.- +|+.+
T Consensus 81 G~Q-lla~~ 88 (190)
T PRK06895 81 GHQ-TLCEF 88 (190)
T ss_pred HHH-HHHHH
Confidence 995 99987
No 204
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=83.68 E-value=0.65 Score=38.83 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHhcC--CeEEEEEeCCCceeee-ccceeeeeccccccccCCCccEEEEcCCccchHhhhcCH-----H
Q 019238 172 EEMEAVIIIDILRRAK--ANVVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK-----K 243 (344)
Q Consensus 172 ~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~-~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~-----~ 243 (344)
...| ..+...|.... .+++++-+..- .... +....-.--.++++.....||.+||-|.. ...+.-.+ +
T Consensus 11 ~~TE-~qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Yw~E 86 (175)
T cd03131 11 IQTE-RQFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEE 86 (175)
T ss_pred HHHH-HHHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccchHHH
Confidence 3455 34566666554 45666665542 2111 10000001135666666899999999974 33332222 4
Q ss_pred HHHHHHHHHhcCCcEEEEcchhhhhhhhc
Q 019238 244 LVNMLKKQKESNRPYGAICASPALVLEPH 272 (344)
Q Consensus 244 l~~~l~~~~~~~k~I~aic~G~~~lLa~a 272 (344)
+.+.+....++...+..+|-|....|-..
T Consensus 87 l~~i~dwa~~~v~stl~iCWgaqaal~~~ 115 (175)
T cd03131 87 LTEILDWAKTHVTSTLFSCWAAMAALYYF 115 (175)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 55555555577899999999976544433
No 205
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=83.28 E-value=1.5 Score=38.17 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=39.3
Q ss_pred HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh---------------hhcCHH
Q 019238 179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---------------FAKSKK 243 (344)
Q Consensus 179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~---------------l~~~~~ 243 (344)
..+.+.++|.....+..... +..++.. ....|.|++|||..+.+. ..++.-
T Consensus 29 Yv~~i~~aG~~pv~ip~~~~-------------~~~~~~~-l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~ 94 (217)
T PF07722_consen 29 YVKAIEAAGGRPVPIPYDAD-------------DEELDEL-LDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIF 94 (217)
T ss_dssp HHHHHHHTT-EEEEE-SS---------------HHHHHHH-HHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEccCCC-------------HHHHHHH-HhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHH
Confidence 45566666666655544421 1122222 256899999999522210 112223
Q ss_pred HHHHHHHHHhcCCcEEEEcchhhhh
Q 019238 244 LVNMLKKQKESNRPYGAICASPALV 268 (344)
Q Consensus 244 l~~~l~~~~~~~k~I~aic~G~~~l 268 (344)
=+.+++.+.++++||.+||-|..++
T Consensus 95 e~~l~~~a~~~~~PilGICrG~Q~l 119 (217)
T PF07722_consen 95 ELALIRNALGRGKPILGICRGMQLL 119 (217)
T ss_dssp HHHHHHHHCCTT--EEEETHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcHHHHHH
Confidence 3567777788999999999998773
No 206
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.54 E-value=9.3 Score=35.07 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCcch--hHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGSEE--MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~--~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
++||+++.-++-.. ..+..+.+.|.+.|+++.+...... .. +... +.......+|++++.||.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~~-----~~~~~~~~~d~vi~~GGDG---- 68 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYPV-----FLASASELIDLAIVLGGDG---- 68 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----cccc-----hhhccccCcCEEEEECCcH----
Confidence 47899998886533 2355667778888988766443321 10 1110 1111124689999999954
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcc-hhhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICA-SPALVLEP 271 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~-G~~~lLa~ 271 (344)
.++..++.+...+.+|.++-. |..-+|+.
T Consensus 69 -----T~l~~~~~~~~~~~pv~gin~~G~lGFL~~ 98 (305)
T PRK02645 69 -----TVLAAARHLAPHDIPILSVNVGGHLGFLTH 98 (305)
T ss_pred -----HHHHHHHHhccCCCCEEEEecCCcceEecC
Confidence 345566666677899999987 64322543
No 207
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=81.75 E-value=1.7 Score=36.57 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=30.9
Q ss_pred CCc-hhhhcccCChHHHHHHHHHhhCC-CEEEEEchhHHHHHHHc
Q 019238 49 CGM-PGATNLKESEVLESIVKKQASDG-RLYAAICVFLAVALGSW 91 (344)
Q Consensus 49 gG~-~~~~~~~~~~~~~~~l~~~~~~g-~~i~aiC~g~~~~La~a 91 (344)
||. .....+.+...+.+-|+++.++| +++-+.|+|. .+||+.
T Consensus 41 GGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~~ 84 (188)
T PF01174_consen 41 GGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAKE 84 (188)
T ss_dssp SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEEE
T ss_pred CCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhhh
Confidence 663 23344555678899999999998 9999999999 577753
No 208
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=81.69 E-value=3.2 Score=43.18 Aligned_cols=71 Identities=30% Similarity=0.326 Sum_probs=50.4
Q ss_pred HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcE
Q 019238 179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPY 258 (344)
Q Consensus 179 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I 258 (344)
.+..|...|++++++..+- .+++ .+||.|++..|.+++.. -+.+.+-+++....++||
T Consensus 186 ~IRcL~~RGa~vtVvPw~~----------------~i~~---~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~Pv 243 (1435)
T KOG0370|consen 186 QIRCLVKRGAEVTVVPWDY----------------PIAK---EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVPV 243 (1435)
T ss_pred HHHHHHHhCceEEEecCCc----------------cccc---cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCCe
Confidence 4556666777777665443 2444 38999999999765543 345677777777778999
Q ss_pred EEEcchhhhhhhhc
Q 019238 259 GAICASPALVLEPH 272 (344)
Q Consensus 259 ~aic~G~~~lLa~a 272 (344)
.+||.|-.+ ||.+
T Consensus 244 fGIClGHQl-lA~A 256 (1435)
T KOG0370|consen 244 FGICLGHQL-LALA 256 (1435)
T ss_pred EEEehhhHH-HHHh
Confidence 999999755 7754
No 209
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=81.09 E-value=3.2 Score=40.06 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=26.6
Q ss_pred ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+.++... +.|+++.++|++|.++|.|-. +|++.
T Consensus 292 L~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~~ 324 (433)
T PRK13896 292 LADSPAL-DELADRAADGLPVLGECGGLM-ALAES 324 (433)
T ss_pred HHhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhcc
Confidence 4445455 889999999999999999995 77763
No 210
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=80.28 E-value=3.1 Score=35.39 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCch-hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHH
Q 019238 8 DVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMP-GATNLKESEVLESIVKKQASDGRLYAAICVFLAV 86 (344)
Q Consensus 8 ~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~ 86 (344)
..|+|.|+++.+..-. +.+....++-+.-- |-+. .+..+++. .+.+.|++....|+|+.+||-|--
T Consensus 19 ~Aler~G~~~~vs~d~--~~i~~AD~liLPGV---------Gaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ- 85 (204)
T COG0118 19 KALERLGAEVVVSRDP--EEILKADKLILPGV---------GAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGMQ- 85 (204)
T ss_pred HHHHHcCCeeEEecCH--HHHhhCCEEEecCC---------CCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhHH-
Confidence 4466667666555433 13333333333221 2222 34555544 889999999999999999999995
Q ss_pred HHHHcCC
Q 019238 87 ALGSWGL 93 (344)
Q Consensus 87 ~La~aGl 93 (344)
+|.+.+.
T Consensus 86 lLfe~Se 92 (204)
T COG0118 86 LLFERSE 92 (204)
T ss_pred hhhhccc
Confidence 8887665
No 211
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=80.25 E-value=3.5 Score=40.97 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
..+.+.|+++.+.++|+.+||.|.- +|+++
T Consensus 66 ~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 66 RGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred cCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 3577788888899999999999995 99975
No 212
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=80.06 E-value=15 Score=31.56 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=59.0
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcC---CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~---~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+|.|.--+|.+...+-..+..|+..- +.+..+. +. .+..+ .|.+ .--+|++|||..-+..
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~--~~---------~Li~E-pW~~----~T~lLV~pGGaDlpY~ 64 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVD--AQ---------FLIKE-PWEE----TTLLLVFPGGADLPYV 64 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEee--eh---------eeecC-cchh----ceEEEEecCCCCchHH
Confidence 567777778999999999999888753 2333332 21 12222 2433 2468999999432222
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
-.-++..-+.|..+.++|..-.+||+|..|
T Consensus 65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 223455567777788899999999999744
No 213
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.00 E-value=13 Score=33.55 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=52.4
Q ss_pred CeEEEEeCCCc-chh-HHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIANGS-EEM-EAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~-~~~-e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
|||+|+.-++- ... .+..+.+.|+..|+++.+...... .. +. . ......+....++|++++.||.+.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~----~~-~-~~~~~~~~~~~~~d~vi~iGGDGT---- 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HL----PE-F-SEEDVLPLEEMDVDFIIAIGGDGT---- 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Cc-c-cccccccccccCCCEEEEEeCcHH----
Confidence 57888877765 233 344666778889988877543221 10 00 0 000111221236899999999543
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
++..++ .+..+.+|.++-.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 344555 556688999998886
No 214
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=79.09 E-value=4.2 Score=34.30 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHhCCCeEEEEEecCC-cceecCC--CCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238 7 IDVLRRSGADVVVASVEKQ-LRVDACH--GVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~-~~v~~~~--g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
.+.|++.|++++++..+.. +.+.... |+-+. ||.... .+.....|+++..++++++.+||-|
T Consensus 15 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~-----------Gg~~~~----~~~~~~~~i~~~~~~~~PilGIC~G 79 (188)
T TIGR00888 15 ARRLRELGVYSELVPNTTPLEEIREKNPKGIILS-----------GGPSSV----YAENAPRADEKIFELGVPVLGICYG 79 (188)
T ss_pred HHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEEC-----------CCCCCc----CcCCchHHHHHHHhCCCCEEEECHH
Confidence 4667888998888776521 1111100 11111 552221 1223467888888999999999999
Q ss_pred HHHHHHHc
Q 019238 84 LAVALGSW 91 (344)
Q Consensus 84 ~~~~La~a 91 (344)
.- +|+.+
T Consensus 80 ~Q-ll~~~ 86 (188)
T TIGR00888 80 MQ-LMAKQ 86 (188)
T ss_pred HH-HHHHh
Confidence 95 89876
No 215
>PRK09271 flavodoxin; Provisional
Probab=78.86 E-value=17 Score=29.67 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=48.7
Q ss_pred CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
|||.|+-.. |....=...+.+.|+..|.++++...... .+ .....+. .+||+|+|.........+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~----------~~~~~~~--~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TL----------AEYPLDP--EDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-cc----------cccccCc--ccCCEEEEECcccCCCcC
Confidence 466666654 44443344567888888888765544321 10 0001222 578999997631111111
Q ss_pred h-cCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 239 A-KSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 239 ~-~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
+ .-..++++|.....++|.++.+++|
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 1 1234555555544478888888876
No 216
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=78.18 E-value=1.6 Score=37.26 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 62 VLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+.++|+++.++++++.+||.|.- +|+.+
T Consensus 60 ~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 60 GLDEALKEHVEKKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred ChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence 467889998999999999999994 99987
No 217
>PRK06703 flavodoxin; Provisional
Probab=78.11 E-value=8.2 Score=31.13 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCc--chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGS--EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~--~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+||.|+-+... ...=.-.+.+.|+..|+++++.....- ..+++ .+||.|++.........
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~viigspt~~~g~ 63 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM---------------DAEEL--LAYDGIILGSYTWGDGD 63 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC---------------CHHHH--hcCCcEEEEECCCCCCc
Confidence 357777776543 333333456677777888776655331 11233 67898888542111111
Q ss_pred hh-cCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 238 FA-KSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 238 l~-~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
++ .-..+++++++...+++.++.+++|.
T Consensus 64 ~p~~~~~f~~~l~~~~l~~k~~~vfg~g~ 92 (151)
T PRK06703 64 LPYEAEDFHEDLENIDLSGKKVAVFGSGD 92 (151)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEccCC
Confidence 11 12334555554445678888887663
No 218
>PRK05665 amidotransferase; Provisional
Probab=77.35 E-value=3 Score=36.84 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (344)
..+.+||++..++++++.+||-|-- +||.+-
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~GhQ-lla~Al 108 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGHQ-LLALLL 108 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHHH-HHHHHh
Confidence 5678999999999999999999995 888663
No 219
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=77.19 E-value=15 Score=30.69 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=49.3
Q ss_pred CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
||++|+-+. |....=.-.+.+.|.. |.+++++....- ...+. .+||.||+.++.. ...
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~~l--~~yD~vIlGspi~-~G~- 60 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEPDL--SDYDRVVIGASIR-YGH- 60 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------CccCH--HHCCEEEEECccc-cCC-
Confidence 355555544 3333323345666766 777766654421 01223 6799988866531 112
Q ss_pred hcCHHHHHHHHHHH--hcCCcEEEEcch
Q 019238 239 AKSKKLVNMLKKQK--ESNRPYGAICAS 264 (344)
Q Consensus 239 ~~~~~l~~~l~~~~--~~~k~I~aic~G 264 (344)
-.+.+.+|+++.. -++|+++.+|.|
T Consensus 61 -~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 61 -FHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred -cCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3577888887754 378999999987
No 220
>PRK05568 flavodoxin; Provisional
Probab=77.15 E-value=24 Score=27.93 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=49.3
Q ss_pred CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
+++.|+-+. |....=.-.+.+.+...|.+++++..... . ..++ .+||.|++..... ....
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~-~--------------~~~~--~~~d~iilgsp~y-~~~~ 63 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA-S--------------VDDV--KGADVVALGSPAM-GDEV 63 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC-C--------------HHHH--HhCCEEEEECCcc-Cccc
Confidence 456666555 33443344556777778888877765431 1 1244 6899999966521 1111
Q ss_pred hcCHHHHHHHHHHH--hcCCcEEEEcch
Q 019238 239 AKSKKLVNMLKKQK--ESNRPYGAICAS 264 (344)
Q Consensus 239 ~~~~~l~~~l~~~~--~~~k~I~aic~G 264 (344)
.....+.+++.+.. .++|.++.+|+.
T Consensus 64 ~~~~~~~~f~~~~~~~~~~k~~~~f~t~ 91 (142)
T PRK05568 64 LEEGEMEPFVESISSLVKGKKLVLFGSY 91 (142)
T ss_pred ccchhHHHHHHHhhhhhCCCEEEEEEcc
Confidence 11234556665543 368888888874
No 221
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=77.06 E-value=35 Score=31.85 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=72.3
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
+|+.|+.-++....-...+.+.|...|+++.++...++.+-.+.....-..+ .+.+....+.|.|+-.|| +...+
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~~r~d~IIaiGG-Gsv~D--- 99 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYD-ALLEAGLDRKSLIIALGG-GVVGD--- 99 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHH-HHHHcCCCCCCeEEEECC-hHHHh---
Confidence 6787777767766444556777888887776655544322111111000000 111112234588888887 32333
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-CCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCC
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSR 310 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-GlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~ 310 (344)
+-.++...+.++.++..+.|- + ++.. .-..++....+...+ .+.........++.|-.++.+-
T Consensus 100 ---~ak~vA~~~~rgip~i~VPTT--~-~a~vds~~~~k~~i~~~~~k-n~~g~~~~P~~viiD~~~l~tl 163 (345)
T cd08195 100 ---LAGFVAATYMRGIDFIQIPTT--L-LAQVDSSVGGKTGVNHPLGK-NLIGAFYQPKLVLIDTDFLKTL 163 (345)
T ss_pred ---HHHHHHHHHhcCCCeEEcchh--H-HHHhhccCCCcceecCCCCC-ceecccCCCCEEEEehHHhhhC
Confidence 234555556779999999974 2 4442 234444333232222 1223445566777887666443
No 222
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=76.91 E-value=14 Score=35.38 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=55.6
Q ss_pred CCCeEEEEe-CCCcchhHHHHHHHHHHhcC------CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238 159 NSPQILVPI-ANGSEEMEAVIIIDILRRAK------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 159 ~~~~v~ill-~~g~~~~e~~~~~~~l~~~~------~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
...+|+++- |.++.+.=++. ...|.-+. .++..+....= .-.+..-....-...+..+ ...|.|+||||
T Consensus 297 ~~V~IalVGKYt~l~DsY~Sv-~KAL~Ha~~~~~~kl~i~wi~s~dL-E~~t~~e~~~~~~~aW~~l--~~adGilvPGG 372 (585)
T KOG2387|consen 297 VPVRIALVGKYTKLSDSYLSV-VKALEHAALAINRKLEIVWIDSSDL-EPETEQEDPRKYHAAWQKL--KSADGILVPGG 372 (585)
T ss_pred CcEEEEEEeccccchHHHHHH-HHHHHHHHHHhcccceEEEEehhcc-cccccccChhHHHHHHHHh--ccCCeEEeCCc
Confidence 346777665 55666654444 44444332 44555443220 1001100011112234444 56899999999
Q ss_pred ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
++. +.-+--+.-++.+.+++.|..+||-|..+
T Consensus 373 FG~----RGveG~i~Aak~ARen~iP~LGiCLGmQ~ 404 (585)
T KOG2387|consen 373 FGD----RGVEGKILAAKWARENKIPFLGICLGMQL 404 (585)
T ss_pred ccc----cchhHHHHHHHHHHhcCCCeEeeehhhhH
Confidence 863 22344566677788899999999999643
No 223
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=76.62 E-value=14 Score=29.75 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC---c-eeeeccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK---L-EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~---~-~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
...+|.+.=.+|++..=+-.+.-..|..+.+..++....- + -..+..|+.+ +++....+.|+|++-||.+.
T Consensus 18 ~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~-----~~~~~~~~~D~vVlmGGLAM 92 (147)
T PF09897_consen 18 DGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQV-----LGEKKDPHPDVVVLMGGLAM 92 (147)
T ss_dssp T-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE------EEEE--S-EEEEEEEGGGGS
T ss_pred CCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCccccc-----ccccCCCCCCEEEEEccccc
Confidence 4689999999999864322222233333345544433210 1 1233446554 22332244899999999765
Q ss_pred hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCC
Q 019238 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (344)
Q Consensus 235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL 275 (344)
+..-...+.+.+.|.+...+. |.++|-=+ + +.++|..
T Consensus 93 P~~~v~~e~v~~li~ki~~~~--iiGiCFms-~-F~kagW~ 129 (147)
T PF09897_consen 93 PKSGVTPEDVNELIKKISPKK--IIGICFMS-M-FEKAGWD 129 (147)
T ss_dssp TTTS--HHHHHHHHHHHEEEE--EEEEEETT-H-HHHTTHH
T ss_pred CCCCCCHHHHHHHHHHhCcCC--EEEEehHH-H-HHHcCCc
Confidence 444345567788888766544 99999875 4 7777743
No 224
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=76.13 E-value=6.6 Score=33.18 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 62 VLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
...++++++ ++++|+.+||.|-- +|+.+
T Consensus 61 ~~~~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 61 ISLEAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred hhHHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 347788877 67899999999995 88866
No 225
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.86 E-value=21 Score=32.76 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=57.8
Q ss_pred CCCeEEEEeCCCcc-hhHH-HHHHHHHHhcCCeEEEEEeCCCceeeecc-----ceeeeeccccccccCCCccEEEEcCC
Q 019238 159 NSPQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASC-----QVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 159 ~~~~v~ill~~g~~-~~e~-~~~~~~l~~~~~~v~~~s~~~~~~v~~~~-----g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
++++|+|+.-++-. ..++ ..+.+.|...|+++.+...... ...... |..+..-....+. ..+.|++++.||
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGG 81 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGG 81 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccccccccchhhc-ccCCCEEEEEcC
Confidence 56789999876542 2333 3556668888888876553321 110000 0000000000111 135799999999
Q ss_pred ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.+ .++...+.+...+.||.+|-.|..-+|+
T Consensus 82 DG---------T~L~aar~~~~~~~PilGIN~G~lGFL~ 111 (306)
T PRK03372 82 DG---------TILRAAELARAADVPVLGVNLGHVGFLA 111 (306)
T ss_pred CH---------HHHHHHHHhccCCCcEEEEecCCCceec
Confidence 54 3456667777788999999998644444
No 226
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=75.09 E-value=3.3 Score=35.32 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHHhhCCCEEEEEchhHHHHHHHcC
Q 019238 63 LESIVKKQASDGRLYAAICVFLAVALGSWG 92 (344)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (344)
+.++++ +.++++.+||.|.- +|+++.
T Consensus 62 l~~~i~---~~~~PilGIClG~Q-ll~~~~ 87 (196)
T PRK13170 62 LIDLIK---ACTQPVLGICLGMQ-LLGERS 87 (196)
T ss_pred hHHHHH---HcCCCEEEECHHHH-HHhhhc
Confidence 444444 44799999999994 999874
No 227
>PRK05569 flavodoxin; Provisional
Probab=74.80 E-value=15 Score=29.03 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=48.4
Q ss_pred CeEEEEeCCCc--chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIANGS--EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~--~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
.+|.|+-+.+. ...=.-.+.+.+...|.++++...... ...++ .+||.|++...... ...
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~---------------~~~~~--~~~d~iilgsPty~-~~~ 63 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA---------------KVEDV--LEADAVAFGSPSMD-NNN 63 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC---------------CHHHH--hhCCEEEEECCCcC-CCc
Confidence 46666666543 232233455667777877776655431 12344 68999999664211 111
Q ss_pred hcCHHHHHHHHHHH---hcCCcEEEEcchh
Q 019238 239 AKSKKLVNMLKKQK---ESNRPYGAICASP 265 (344)
Q Consensus 239 ~~~~~l~~~l~~~~---~~~k~I~aic~G~ 265 (344)
...+.+..++..+. .++|.++.++++.
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g 93 (141)
T PRK05569 64 IEQEEMAPFLDQFKLTPNENKKCILFGSYG 93 (141)
T ss_pred CChHHHHHHHHHhhccCcCCCEEEEEeCCC
Confidence 11234455555543 3688988888754
No 228
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=74.69 E-value=5.4 Score=34.13 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+...+||++....+++|.+||.|.- +||.+
T Consensus 65 ~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~ 95 (198)
T COG0518 65 LPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA 95 (198)
T ss_pred chhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence 67889999999999999999999995 88754
No 229
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=73.66 E-value=12 Score=31.33 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=40.2
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
.+.|++.|+++.++..+...... . .+.+.+-. ||.... .++. ....+++...+++++.+||-|
T Consensus 15 ~~~l~~~G~~~~~~~~~~~~~~~--------~--~~~~~dgvil~gG~~~~---~~~~-~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 15 VQYLRELGAEVVVVRNDEITLEE--------L--ELLNPDAIVISPGPGHP---EDAG-ISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred HHHHHHcCCceEEEeCCCCCHHH--------H--hhcCCCEEEECCCCCCc---ccch-hHHHHHHHHhcCCCEEEECHh
Confidence 35567889999988886421100 0 11122211 442221 1122 344555556778999999999
Q ss_pred HHHHHHHc
Q 019238 84 LAVALGSW 91 (344)
Q Consensus 84 ~~~~La~a 91 (344)
.- +|+.+
T Consensus 81 ~Q-lla~~ 87 (184)
T cd01743 81 HQ-AIAEA 87 (184)
T ss_pred HH-HHHHH
Confidence 95 89876
No 230
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=72.85 E-value=39 Score=35.38 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=66.2
Q ss_pred CCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc----
Q 019238 158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---- 233 (344)
Q Consensus 158 ~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~---- 233 (344)
++.+||+||--+|.+-. ..+...|.++||+..=++-+. -.. | + ...++|-.|+.+||+.
T Consensus 1056 s~~PkVAilREeGvNg~--rEMa~af~~AgF~~~DVtmtD--lL~---G-----~-----~~ld~frGlaf~GGFSYaDv 1118 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGD--REMAAAFYAAGFETVDVTMTD--LLA---G-----R-----HHLDDFRGLAFCGGFSYADV 1118 (1320)
T ss_pred cCCCceEEeeccccccH--HHHHHHHHHcCCceeeeeeeh--hhc---C-----c-----eeHhHhcceeeecCcchHhh
Confidence 34579999999998542 345677888998876554433 110 1 1 1124567777777753
Q ss_pred ------chHhhhcCHHHHHHHHHHHhc-CCcEEEEcchhhhhhhhcCCCC
Q 019238 234 ------GAQAFAKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLK 276 (344)
Q Consensus 234 ------~~~~l~~~~~l~~~l~~~~~~-~k~I~aic~G~~~lLa~aGlL~ 276 (344)
+...+.-++.++.-..+|+++ ...-.+||+|-.+ ++..|.+-
T Consensus 1119 LgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQl-ms~Lg~i~ 1167 (1320)
T KOG1907|consen 1119 LGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQL-MSRLGWIG 1167 (1320)
T ss_pred hccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHH-HHHhcccC
Confidence 233446678888888888764 4557789999655 99988653
No 231
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=72.78 E-value=11 Score=32.16 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHH-hhCCCEEEEEchhHHHHHHHcCC
Q 019238 64 ESIVKKQ-ASDGRLYAAICVFLAVALGSWGL 93 (344)
Q Consensus 64 ~~~l~~~-~~~g~~i~aiC~g~~~~La~aGl 93 (344)
...|++. .++++++.+||.|.- +|+.++.
T Consensus 62 ~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~~~ 91 (201)
T PRK13152 62 IEALKEQVLVQKKPILGICLGMQ-LFLERGY 91 (201)
T ss_pred HHHHHHHHHhCCCcEEEECHhHH-HHhhccc
Confidence 4455554 588999999999994 9998743
No 232
>PRK06756 flavodoxin; Provisional
Probab=72.44 E-value=17 Score=29.19 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCeEEEEeCCCcchhH--HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGSEEME--AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e--~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+||.|+-+...--.+ .-.+.+.++..|.++++...... + ...+. .+||.|++.........
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~--~~~d~vi~gspt~~~g~ 64 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASIL--EQYDGIILGAYTWGDGD 64 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHH--hcCCeEEEEeCCCCCCC
Confidence 3577777766442222 23456778777888776655431 1 12334 67899988653211111
Q ss_pred hhcCHHHHHHHHHH---HhcCCcEEEEcchh
Q 019238 238 FAKSKKLVNMLKKQ---KESNRPYGAICASP 265 (344)
Q Consensus 238 l~~~~~l~~~l~~~---~~~~k~I~aic~G~ 265 (344)
-.+.+.+|+.+. .-++|+++.+++|.
T Consensus 65 --~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 65 --LPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred --CcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 122466776654 33689999888753
No 233
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=72.18 E-value=4.3 Score=34.33 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
....++++++.++++++.+||.|.. +|+.+
T Consensus 87 ~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~ 116 (189)
T cd01745 87 AFELALLRAALERGKPILGICRGMQ-LLNVA 116 (189)
T ss_pred HHHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence 4557899999999999999999995 77754
No 234
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=71.92 E-value=6 Score=37.22 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+...++++++.++++|+.+||.|.. +|+.+
T Consensus 234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a 264 (360)
T PRK12564 234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA 264 (360)
T ss_pred HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 36778899999988999999999995 77754
No 235
>PRK05670 anthranilate synthase component II; Provisional
Probab=70.55 E-value=10 Score=32.00 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHHH
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAV 86 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~ 86 (344)
.+.|++.|++++++..+......- . .+.+|..+ -.||.....+ .....++++++ .+++++.+||-|.-
T Consensus 16 ~~~l~~~g~~~~v~~~~~~~~~~~-~--~~~~dglI----lsgGpg~~~d---~~~~~~~l~~~-~~~~PvLGIClG~Q- 83 (189)
T PRK05670 16 VQYLGELGAEVVVYRNDEITLEEI-E--ALNPDAIV----LSPGPGTPAE---AGISLELIREF-AGKVPILGVCLGHQ- 83 (189)
T ss_pred HHHHHHCCCcEEEEECCCCCHHHH-H--hCCCCEEE----EcCCCCChHH---cchHHHHHHHh-cCCCCEEEECHHHH-
Confidence 455678899999888763111000 0 00011100 0055333322 23456788764 56799999999995
Q ss_pred HHHHc
Q 019238 87 ALGSW 91 (344)
Q Consensus 87 ~La~a 91 (344)
+|+.+
T Consensus 84 lla~a 88 (189)
T PRK05670 84 AIGEA 88 (189)
T ss_pred HHHHH
Confidence 88876
No 236
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.44 E-value=37 Score=31.13 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCeEEEEeCCCcc-hhHH-HHHHHHHHhcCCeEEEEEeCCCceeeeccce--ee---eec-cccccccCCCccEEEEcCC
Q 019238 160 SPQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASCQV--KL---VAD-MLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 160 ~~~v~ill~~g~~-~~e~-~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~--~v---~~~-~~~~~~~~~~~D~liipGG 231 (344)
|++|+|+.-++-. ..++ ..+.+.|.+.|+++.+-..... ... .... .+ ..+ ....+. ..+.|.+++.||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-ILG-YANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcC-ccccccccccccccccChhhc-ccCcCEEEEEeC
Confidence 4678988776552 3333 3556668888988866543221 110 0000 00 000 011121 135799999999
Q ss_pred ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.+ .++...+.+...+.||.+|-.|..-+|+
T Consensus 78 DG---------TlL~aar~~~~~~iPilGIN~G~lGFLt 107 (305)
T PRK02649 78 DG---------TVLSAARQLAPCGIPLLTINTGHLGFLT 107 (305)
T ss_pred cH---------HHHHHHHHhcCCCCcEEEEeCCCCcccc
Confidence 54 3556667777788999999988644343
No 237
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=69.80 E-value=12 Score=31.51 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=41.3
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc-cC----CCchhhhcccCChHHHHHHHHHhhCCCEEEEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-DA----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~-~~----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (344)
.++.|++.|++++++..+.. +... +++.. +. ||...+.+ ......+++. .++++|+.+|
T Consensus 15 l~~~l~~~~~~~~v~~~~~~-~~~~-----------~~~~~~~~iilsgGP~~~~~---~~~~~~~i~~-~~~~~PiLGI 78 (191)
T PRK06774 15 LYQYFCELGTEVMVKRNDEL-QLTD-----------IEQLAPSHLVISPGPCTPNE---AGISLAVIRH-FADKLPILGV 78 (191)
T ss_pred HHHHHHHCCCcEEEEeCCCC-CHHH-----------HHhcCCCeEEEcCCCCChHh---CCCchHHHHH-hcCCCCEEEE
Confidence 45677888999988876521 1100 11111 11 55333332 2334566665 5678999999
Q ss_pred chhHHHHHHHc
Q 019238 81 CVFLAVALGSW 91 (344)
Q Consensus 81 C~g~~~~La~a 91 (344)
|-|.- +|+.+
T Consensus 79 C~G~Q-lla~~ 88 (191)
T PRK06774 79 CLGHQ-ALGQA 88 (191)
T ss_pred CHHHH-HHHHH
Confidence 99995 89877
No 238
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=69.72 E-value=5.7 Score=34.21 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238 64 ESIVKKQASDGRLYAAICVFLAVALGSWGL 93 (344)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~~~La~aGl 93 (344)
..+++...++++++.+||.|.- +|++++.
T Consensus 67 ~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~ 95 (209)
T PRK13146 67 EAVIEAVLAAGRPFLGICVGMQ-LLFERGL 95 (209)
T ss_pred HHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence 3445555578999999999995 9999864
No 239
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=69.58 E-value=15 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.5
Q ss_pred HHHhhCCCEEEEEchhHHHHHHHc
Q 019238 68 KKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
++..+.++++.+||.|.- +|+.+
T Consensus 64 ~~~~~~~~PilGIC~G~Q-ll~~~ 86 (181)
T cd01742 64 PEIFELGVPVLGICYGMQ-LIAKA 86 (181)
T ss_pred HHHHhcCCCEEEEcHHHH-HHHHh
Confidence 444556999999999995 89884
No 240
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.79 E-value=36 Score=30.99 Aligned_cols=100 Identities=17% Similarity=0.056 Sum_probs=55.2
Q ss_pred CeEEEEeCCCcc-hhHH-HHHHHHHHhcCCeEEEEEeCCCceeeeccce--eeeeccccccccCCCccEEEEcCCccchH
Q 019238 161 PQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASCQV--KLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 161 ~~v~ill~~g~~-~~e~-~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~--~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
|+|+|+.-++-. ..++ ..+.+.|.+.|+++.+-..... ........ ........++. ..++|.+++.||.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGGDG--- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGGDG--- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhc-ccCCCEEEEECCcH---
Confidence 578888776542 2233 3455668888888766443221 11000000 00000011222 13589999999954
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.++.-.+.+...+.||.+|-.|..-+|+.
T Consensus 76 ------T~L~aa~~~~~~~~PilGIN~G~lGFLt~ 104 (292)
T PRK01911 76 ------TFLRTATYVGNSNIPILGINTGRLGFLAT 104 (292)
T ss_pred ------HHHHHHHHhcCCCCCEEEEecCCCCcccc
Confidence 34556676667789999999996433543
No 241
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.44 E-value=50 Score=30.14 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=55.6
Q ss_pred CCeEEEEeCCCc-chhH-HHHHHHHHHhcCCeEEEEEeCCC-ceeee--ccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 160 SPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADK-LEILA--SCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 160 ~~~v~ill~~g~-~~~e-~~~~~~~l~~~~~~v~~~s~~~~-~~v~~--~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
++||+|+.-++- ...+ +..+.+.|.+.|+++.+-..... ..... ..+... ....+. ..+.|++++.||.+
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~D~vi~lGGDG- 79 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI---VNKTEL-GQYCDLVAVLGGDG- 79 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc---cchhhc-CcCCCEEEEECCcH-
Confidence 578999987655 3333 33556668888888765432110 00000 011111 011222 13579999999954
Q ss_pred hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++.-.+.+...+.||.++-.|..-+|+
T Consensus 80 --------T~L~aa~~~~~~~~PilGIN~G~lGFL~ 107 (296)
T PRK04539 80 --------TFLSVAREIAPRAVPIIGINQGHLGFLT 107 (296)
T ss_pred --------HHHHHHHHhcccCCCEEEEecCCCeEee
Confidence 3455666666778999999998643344
No 242
>PRK09065 glutamine amidotransferase; Provisional
Probab=68.28 E-value=6.8 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
..+++||++..+.++++.+||-|.- +|+.+
T Consensus 75 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 75 ERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred HHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 5678999999999999999999995 88865
No 243
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=67.68 E-value=79 Score=27.12 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeecc--------ce--eeeeccccccccCCCccEEEE-
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASC--------QV--KLVADMLIDEAAKLSYDLIVL- 228 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~--------g~--~v~~~~~~~~~~~~~~D~lii- 228 (344)
.++|.|++-+|-+--|-......|...|+.++++-.....+..+.. +. .+... ...+ .+.++|+||=
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~-~~~~-~~~~~dvIVDa 126 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIK-ELED-EPESADVIVDA 126 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeec-cccc-ccccCCEEEEe
Confidence 4799999999999999999999999999988887765432333211 11 11111 1111 2345666552
Q ss_pred ---cCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCC
Q 019238 229 ---PGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (344)
Q Consensus 229 ---pGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL 275 (344)
.|..+ .-.+++...|+...+++++|.|+.-=+-+ -+..|-.
T Consensus 127 lfG~G~~g-----~lrep~a~~Ie~iN~~~~pivAVDiPSGl-~~dtG~~ 170 (203)
T COG0062 127 LFGTGLSG-----PLREPFASLIEAINASGKPIVAVDIPSGL-DADTGEV 170 (203)
T ss_pred ceecCCCC-----CCccHHHHHHHHHHhcCCceEEEeCCCCc-CCCCCcc
Confidence 23222 12446677788888999999999865433 5666643
No 244
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=67.67 E-value=6.3 Score=33.13 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEchh
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (344)
...|++.+.+++++..+.. ...- .+ .+++.+.. ||.....+ .+..+.++++..++++++.+||.|
T Consensus 14 ~~~l~~~~~~~~v~~~~~~-~~~~-------~~-~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~PilGIC~G 81 (192)
T PF00117_consen 14 VRALRELGIDVEVVRVDSD-FEEP-------LE-DLDDYDGIIISGGPGSPYD---IEGLIELIREARERKIPILGICLG 81 (192)
T ss_dssp HHHHHHTTEEEEEEETTGG-HHHH-------HH-HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTSEEEEETHH
T ss_pred HHHHHHCCCeEEEEECCCc-hhhh-------hh-hhcCCCEEEECCcCCcccc---ccccccccccccccceEEEEEeeh
Confidence 4556788888888887631 1100 00 11122111 55333322 578889999999999999999999
Q ss_pred HHHHHHHcC
Q 019238 84 LAVALGSWG 92 (344)
Q Consensus 84 ~~~~La~aG 92 (344)
-- +|+.+-
T Consensus 82 ~Q-~la~~~ 89 (192)
T PF00117_consen 82 HQ-ILAHAL 89 (192)
T ss_dssp HH-HHHHHT
T ss_pred hh-hhHHhc
Confidence 95 888653
No 245
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.29 E-value=40 Score=30.78 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCCeEEEEeCCCc-chhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238 159 NSPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 159 ~~~~v~ill~~g~-~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
.+++|+|+.-++- ...+ +..+.+.|.+.|+++.+...... .. ........ ...+. ...+|.+++.||.+.
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-~~-~~~~~~~~---~~~~~-~~~~d~vi~~GGDGt-- 74 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-VL-PGHGLQTV---SRKLL-GEVCDLVIVVGGDGS-- 74 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Cccccccc---chhhc-ccCCCEEEEEeCcHH--
Confidence 3568999987765 3333 33556668888888765433221 00 00001100 01111 135899999999543
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
++..++.+.....+|.++-.|..-+|.
T Consensus 75 -------~l~~~~~~~~~~~Pvlgin~G~lGFl~ 101 (295)
T PRK01231 75 -------LLGAARALARHNVPVLGINRGRLGFLT 101 (295)
T ss_pred -------HHHHHHHhcCCCCCEEEEeCCcccccc
Confidence 344456566678899999988633343
No 246
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=67.19 E-value=4.2 Score=34.07 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.2
Q ss_pred CCch-hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 49 CGMP-GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 49 gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
||.- ....+.+...+.+-|+++..+|+|+.+.|+|. ++||+-
T Consensus 46 GGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLake 88 (194)
T COG0311 46 GGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGL-ILLAKE 88 (194)
T ss_pred CccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhh-hhhhhh
Confidence 6632 23445566788889999999999999999999 577753
No 247
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=66.97 E-value=37 Score=26.92 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.+||.+++......... ..+.+..|++....++|.++.+|+|
T Consensus 49 ~~~d~iilgs~t~~~g~--~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 49 ENYDLVFLGTWTWERGR--TPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhCCEEEEEcCeeCCCc--CCHHHHHHHHHhcccCCEEEEEEcC
Confidence 57899988764211111 2346777887766688988888877
No 248
>PRK11914 diacylglycerol kinase; Reviewed
Probab=65.81 E-value=25 Score=32.11 Aligned_cols=88 Identities=24% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCCeEEEEeCCCc----chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIANGS----EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~~g~----~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
.++|+.+++-|.. .........+.|+..|+++.++..+.. + .......+.....+|.|++.||.+.
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-------~---~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-------H---DARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-------H---HHHHHHHHHHhcCCCEEEEECCchH
Confidence 3588888887733 223344667889999988776554431 0 0011112222356899999999764
Q ss_pred hHhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
... .++.......+++-+=.|+
T Consensus 77 i~e---------vv~~l~~~~~~lgiiP~GT 98 (306)
T PRK11914 77 ISN---------ALQVLAGTDIPLGIIPAGT 98 (306)
T ss_pred HHH---------HhHHhccCCCcEEEEeCCC
Confidence 432 2233334456666655554
No 249
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=65.52 E-value=43 Score=31.45 Aligned_cols=133 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCc---cEEEEcCCccchHh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY---DLIVLPGGLGGAQA 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~---D~liipGG~~~~~~ 237 (344)
+|+.|+.-++....-...+.+.|+..|+++.++...++.+-.+.... +...+......+ |+|+-.|| +...+
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v----~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D 98 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTL----SDLVERALALGATRRSVIVALGG-GVVGN 98 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHH----HHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 57777766666655445677888888887655444332121111100 011111111234 48887777 22322
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeC-cCchhhhccCCcCCCcEEEeCCeEeC
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAF-PAMCNKLSNQSEIENRVVVDGNLVTS 309 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~-~~~~~~~~~~~~~~~~~v~dg~liT~ 309 (344)
+-.++...+.++.++..+.+. + ++... .+.++. ..+ ...+ .+....+....++.|-.++.+
T Consensus 99 ------~ak~~A~~~~rgip~I~IPTT--l-la~~da~i~~k~-~vn~~~~k-n~~g~~~~P~~vivDp~~l~t 161 (355)
T cd08197 99 ------IAGLLAALLFRGIRLVHIPTT--L-LAQSDSVLSLKQ-AVNSTYGK-NLIGLYYPPSFIFIDTRVLRT 161 (355)
T ss_pred ------HHHHHHHHhccCCCEEEecCc--c-cccccccccCce-eeeCCCCc-ceeecCCCCcEEEEcHHHHhh
Confidence 223344445578999999984 2 34322 222222 111 1111 122344556667777665543
No 250
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=65.44 E-value=19 Score=30.45 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=41.6
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEchhHH
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (344)
.++.|++.|+++.++..+...... -. .+.++. +-..||..... ++.....+++. .++++|+.+||-|.-
T Consensus 15 ~~~~l~~~g~~~~~~~~~~~~~~~-~~--~~~~~~----iilsgGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Q 83 (193)
T PRK08857 15 LYQYFCELGAQVKVVRNDEIDIDG-IE--ALNPTH----LVISPGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGHQ 83 (193)
T ss_pred HHHHHHHCCCcEEEEECCCCCHHH-Hh--hCCCCE----EEEeCCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHHH
Confidence 356678889999998876211100 00 000110 00005532332 23334567766 578899999999995
Q ss_pred HHHHHc
Q 019238 86 VALGSW 91 (344)
Q Consensus 86 ~~La~a 91 (344)
+|+.+
T Consensus 84 -lia~a 88 (193)
T PRK08857 84 -AIAQV 88 (193)
T ss_pred -HHHHH
Confidence 88865
No 251
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=64.68 E-value=7.3 Score=33.72 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=43.7
Q ss_pred HHHHHhCCCeEEEEEecCCcceecCCCCEEEcCc--cccccccC---CCchhhhcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADA--LVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 7 ~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~--~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
.+.|++.|+++.++..+. +.. ++. .+++.+-. ||..... +.....+|+++..++++++.+||
T Consensus 17 ~~~l~~~G~~~~~~~~~~--~~~--------~~~~~~~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~PiLGIC 83 (214)
T PRK07765 17 VQYLGQLGVEAEVWRNDD--PRL--------ADEAAVAAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTPLLGVC 83 (214)
T ss_pred HHHHHHcCCcEEEEECCC--cCH--------HHHHHhhcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCCCEEEEc
Confidence 355677788888887652 110 110 01121111 5532222 23456789999999999999999
Q ss_pred hhHHHHHHHc
Q 019238 82 VFLAVALGSW 91 (344)
Q Consensus 82 ~g~~~~La~a 91 (344)
-|.- +|+.+
T Consensus 84 ~G~Q-lla~a 92 (214)
T PRK07765 84 LGHQ-AIGVA 92 (214)
T ss_pred cCHH-HHHHH
Confidence 9995 77754
No 252
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=64.56 E-value=54 Score=29.87 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=55.0
Q ss_pred CCeEEEEeCCCcch-hH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGSEE-ME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~~-~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
+++|+|+.-++-.. .+ +..+.+.|+..|+++.+...... ... ..... .....+. ...+|++++.||.+
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~~-~~~~~---~~~~~~~-~~~~d~vi~~GGDG---- 74 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NIG-LTGYP---ALTPEEI-GARADLAVVLGGDG---- 74 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcC-ccccc---ccChhHh-ccCCCEEEEECCcH----
Confidence 46799988776532 22 44556668888888655332211 110 00000 0011222 24689999999954
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++..++.+...+.++.+|-.|..-+|+
T Consensus 75 -----t~l~~~~~~~~~~~pilGIn~G~lGFL~ 102 (291)
T PRK02155 75 -----TMLGIGRQLAPYGVPLIGINHGRLGFIT 102 (291)
T ss_pred -----HHHHHHHHhcCCCCCEEEEcCCCccccc
Confidence 3456666666678899999888633343
No 253
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=64.04 E-value=41 Score=27.07 Aligned_cols=64 Identities=22% Similarity=0.096 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHH
Q 019238 172 EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ 251 (344)
Q Consensus 172 ~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~ 251 (344)
...++......|.+.|+.+++++++. +. .+|++||+|.-.. .++...+.|+++
T Consensus 24 y~~~~~~~~~~l~~~gi~~d~v~~~~-------------------~l--~~y~~vi~P~~~~------~~~~~~~~l~~~ 76 (154)
T cd03143 24 YLDLALALYRALRELGIPVDVVPPDA-------------------DL--SGYKLVVLPDLYL------LSDATAAALRAY 76 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC-------------------Cc--ccCCEEEECchhc------CCHHHHHHHHHH
Confidence 34577888999999999999887432 11 4799999998632 245778888888
Q ss_pred HhcCCcEEEEc
Q 019238 252 KESNRPYGAIC 262 (344)
Q Consensus 252 ~~~~k~I~aic 262 (344)
.++|..+.+-+
T Consensus 77 v~~GG~li~~~ 87 (154)
T cd03143 77 VENGGTLVAGP 87 (154)
T ss_pred HHCCCEEEEec
Confidence 88877655543
No 254
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.86 E-value=55 Score=29.75 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCeEEEEeCCCcchhHHH-HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 159 NSPQILVPIANGSEEMEAV-IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~-~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
++++|+|+.-++-...++. .+.+.|.+.|+++.+-..... .. ...+. ..++. ..++|++++.||.+
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~-~~~~~------~~~~~-~~~~Dlvi~iGGDG---- 75 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-IL-DLPGY------GLDEL-FKISDFLISLGGDG---- 75 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hh-ccccc------chhhc-ccCCCEEEEECCCH----
Confidence 3578999987764444433 345557777877755432221 11 01111 11222 13689999999954
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++...+.+...+.||.++-.|..-+|+
T Consensus 76 -----T~L~aa~~~~~~~~PilGIN~G~lGFLt 103 (287)
T PRK14077 76 -----TLISLCRKAAEYDKFVLGIHAGHLGFLT 103 (287)
T ss_pred -----HHHHHHHHhcCCCCcEEEEeCCCcccCC
Confidence 3456667777778999999988643344
No 255
>PRK07308 flavodoxin; Validated
Probab=63.76 E-value=33 Score=27.38 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=43.4
Q ss_pred eEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 162 QILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 162 ~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
+|.|+-+. |....=...+.+.|...|..+++.....- ..++. .++|.|++.....+...++
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~---------------~~~~l--~~~d~vi~g~~t~g~G~~p 65 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV---------------DASDF--EDADIAIVATYTYGDGELP 65 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC---------------CHhHh--ccCCEEEEEeCccCCCCCC
Confidence 45555443 33333334556777777777665544331 11233 5789988854321111111
Q ss_pred -cCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 240 -KSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 240 -~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.-..++++|+...-+++.++.++.|
T Consensus 66 ~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 66 DEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 1223344444433457888877775
No 256
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.67 E-value=68 Score=29.22 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=52.6
Q ss_pred CCeEEEEeCCCcc-hhHH-HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~g~~-~~e~-~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
+++|+|+.-++-. ..++ ..+.+.|.+.|+++.+-..... .. +..........+. ..+.|.+++.||.+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~-~~~~d~vi~lGGDG---- 74 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEI-GQQADLAIVVGGDG---- 74 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Ccccccccchhhc-CCCCCEEEEECCcH----
Confidence 5779998776553 3333 3456668888888765432211 11 0000000111222 13589999999954
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
.++.-.+.+...+.+|.++..|.
T Consensus 75 -----T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 -----NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHHhcCCCCeEEEEECCC
Confidence 34555566666678999999986
No 257
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=61.80 E-value=20 Score=28.87 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCeEEEEeCCCcc---hhHHHHHHHHHHhcCC---eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC---
Q 019238 160 SPQILVPIANGSE---EMEAVIIIDILRRAKA---NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG--- 230 (344)
Q Consensus 160 ~~~v~ill~~g~~---~~e~~~~~~~l~~~~~---~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG--- 230 (344)
..||+|+...-.. +.-+....+.|...|. +++++.+.|- .-+.+.....+.. .+||+++..|
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa------~ElP~a~~~l~~~---~~~Davi~lG~VI 73 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGA------FELPLAAKRLAES---GRYDAVIALGCVI 73 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSG------GGHHHHHHHHHHC---STESEEEEEEEEE
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCH------HHHHHHHHHHhcc---cCccEEEEecccc
Confidence 4789999876442 2233457888888887 7888877662 1222223322322 5799999988
Q ss_pred -CccchHhhhcCHHHHHHHHHHHhcCCcEE
Q 019238 231 -GLGGAQAFAKSKKLVNMLKKQKESNRPYG 259 (344)
Q Consensus 231 -G~~~~~~l~~~~~l~~~l~~~~~~~k~I~ 259 (344)
|......+..+.....+.+-..+.++||.
T Consensus 74 ~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 74 RGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 22223344445555666666678888875
No 258
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=61.79 E-value=28 Score=29.80 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHH
Q 019238 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK 252 (344)
Q Consensus 173 ~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~ 252 (344)
..++...+..|.+.|+.+++++++. +. ..|.+||+|+-. .-++.+.+.|+++.
T Consensus 29 ~~~~~~~y~al~~~gi~vDvv~~~~-------------------dL--~~Ykllv~P~~~------~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 29 RDQVRGWYRALRELGIPVDVVSPDD-------------------DL--SGYKLLVLPSLY------ILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHHHHHTTT--EEEE-TTS-----------------------TT-SEEEES--S------C--HHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEecCcC-------------------Cc--ccCcEEEEeeEE------EEChHHHHHHHHHH
Confidence 4457788899999999999998753 22 569999999853 24677888899998
Q ss_pred hcCCcEE-EEcch
Q 019238 253 ESNRPYG-AICAS 264 (344)
Q Consensus 253 ~~~k~I~-aic~G 264 (344)
++|..+. .-.+|
T Consensus 82 ~~GG~li~~~~tg 94 (207)
T PF08532_consen 82 ENGGTLILTPRTG 94 (207)
T ss_dssp T-SS-EEE-TTTT
T ss_pred HCCCEEEEEcccC
Confidence 8766554 44444
No 259
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=60.96 E-value=22 Score=34.81 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=52.9
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcC-C-eEEEEEeCCCceeeeccceeeeeccccccc-cCCCccEEEEcCCccchHh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAK-A-NVVVASVADKLEILASCQVKLVADMLIDEA-AKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~-~-~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~-~~~~~D~liipGG~~~~~~ 237 (344)
.|+-+|+.|.++...+. +++.+...+ . -+.++..+ ++.+| .+... ....||+|+|.-|.+.+.-
T Consensus 13 ~rl~~LlID~YDSyTfN-iy~ll~~~~~vp~V~~vh~~-----------~~~~d-~~~~l~q~~~FDaIVVgPGPG~P~~ 79 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFN-IYQLLSTINGVPPVVIVHDE-----------WTWED-AYHYLYQDVAFDAIVVGPGPGSPMC 79 (767)
T ss_pred hheeEEEEecccchhhh-HHHHHHHhcCCCcEEEEecc-----------ccCHH-HHHHHhhccccceEEecCCCCCCCc
Confidence 45667777877776654 456666553 2 22222222 12222 23333 1145999999666554421
Q ss_pred hhcCHHHHHHHHHHHhc--CCcEEEEcchhhhhhhhcCCCCCCeee
Q 019238 238 FAKSKKLVNMLKKQKES--NRPYGAICASPALVLEPHGLLKGKKAT 281 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~--~k~I~aic~G~~~lLa~aGlL~g~~~T 281 (344)
++-+..+.+.... ..||.+||-|-. +.|+..|-.+.
T Consensus 80 ----a~d~gI~~rl~~~~~~iPilGICLGfQ----al~l~hGA~v~ 117 (767)
T KOG1224|consen 80 ----AADIGICLRLLLECRDIPILGICLGFQ----ALGLVHGAHVV 117 (767)
T ss_pred ----HHHHHHHHHHHHhcCCCceeeeehhhH----hHhhhccccee
Confidence 2223344444433 489999999843 33455554443
No 260
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=60.18 E-value=6 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHhhCCCEEEEEchhHH
Q 019238 64 ESIVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~ 85 (344)
.+.|+++.++|+++.+||.|+.
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy 88 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAY 88 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCcc
Confidence 7888888899999999999994
No 261
>PRK00758 GMP synthase subunit A; Validated
Probab=59.93 E-value=16 Score=30.51 Aligned_cols=27 Identities=11% Similarity=-0.014 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
..+.+|++ +.++++.+||-|.- +|+.+
T Consensus 57 ~~~~~~l~---~~~~PilGIC~G~Q-~L~~a 83 (184)
T PRK00758 57 GNCPEYLK---ELDVPILGICLGHQ-LIAKA 83 (184)
T ss_pred cccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence 34566776 45799999999995 99977
No 262
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=59.22 E-value=16 Score=31.07 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=40.6
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccCCC-ch--hhhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACG-MP--GATNLKESEVLESIVKKQASDGRLYAAICV 82 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~gG-~~--~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (344)
..+.|++.++++.++... +.+....++ +-| |+ .. ....+++ ..+.+.|++ ..|+++.+||.
T Consensus 15 ~~~al~~~g~~~~~v~~~--~~l~~~D~l-IlP----------G~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGICl 78 (192)
T PRK13142 15 VKRAIEHLGYEVVVSNTS--KIIDQAETI-ILP----------GVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGICL 78 (192)
T ss_pred HHHHHHHcCCCEEEEeCH--HHhccCCEE-EEC----------CCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEECH
Confidence 345677788887777533 233222222 111 32 11 1222222 245677776 56899999999
Q ss_pred hHHHHHHHcC
Q 019238 83 FLAVALGSWG 92 (344)
Q Consensus 83 g~~~~La~aG 92 (344)
|- -+|++..
T Consensus 79 Gm-QlL~~~~ 87 (192)
T PRK13142 79 GM-QLMYEHS 87 (192)
T ss_pred HH-HHHhhhc
Confidence 99 4898876
No 263
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=59.12 E-value=1.2e+02 Score=28.20 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=65.5
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
+|+.|+.-++....-...+.+.|+..|+++......++.+-.+.....-. -..+.+....+.|.|+-.|| +...+.
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~-~~~~~~~~~~r~d~IIavGG-Gsv~D~-- 96 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRL-YDQLLEAGLDRSSTIIALGG-GVVGDL-- 96 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHH-HHHHHHcCCCCCCEEEEEcC-hHHHHH--
Confidence 67777776666554444566778888876644333332111111110000 00111112234689998887 323222
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-CCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeC
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTS 309 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-GlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~ 309 (344)
-.++...+.++.++.++.+- + ++.. .-..++....++..+. ..........++.|-.++.+
T Consensus 97 ----aK~iA~~~~~~~p~i~VPTT--~-~a~~ds~~~~k~~i~~~~~kn-~~~~~~~P~~viiDp~l~~t 158 (344)
T TIGR01357 97 ----AGFVAATYMRGIRFIQVPTT--L-LAMVDSSVGGKTGINFPGGKN-LIGTFYQPKAVLIDPDFLKT 158 (344)
T ss_pred ----HHHHHHHHccCCCEEEecCc--h-hheeccccCcceeEeCCCCce-EEeeccCCceEEEcHHHHhh
Confidence 23333345678999999984 1 2321 1233433333322221 11223455667777766543
No 264
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=57.18 E-value=26 Score=36.26 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
....+++++..+.++|+.+||-|.- +|+++
T Consensus 575 ~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 575 FDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred cccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 3557889998999999999999995 89887
No 265
>PRK13055 putative lipid kinase; Reviewed
Probab=57.14 E-value=61 Score=30.06 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCeEEEEeCCCcc----hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 160 SPQILVPIANGSE----EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 160 ~~~v~ill~~g~~----~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
++|+.|++-|..- ...+..+...|+..++++++...+.. + + .......+.....+|+|++.||.+..
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-~-----~---~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE-P-----N---SAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC-C-----c---cHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 4788888877332 23345667888999988776544321 0 0 00000111112457899999986643
No 266
>PRK12361 hypothetical protein; Provisional
Probab=57.13 E-value=1.2e+02 Score=30.30 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhH
Q 019238 61 EVLESIVKKQASDGRLYAAICVFL 84 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~ 84 (344)
++..+||.+..++|+.|..-|.+.
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCC
Confidence 677889999999999999999876
No 267
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=56.70 E-value=14 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHcC
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (344)
..+..+|+++.++++++.+||.|. -+|+++.
T Consensus 59 ~gl~~~i~~~~~~~~pilGiC~G~-Q~l~~~~ 89 (210)
T PRK14004 59 TGLRSTIDKHVESGKPLFGICIGF-QILFESS 89 (210)
T ss_pred cCcHHHHHHHHHcCCCEEEECHhH-HHHHHhc
Confidence 357888999999999999999999 4999865
No 268
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=56.31 E-value=1.5e+02 Score=27.84 Aligned_cols=138 Identities=13% Similarity=0.072 Sum_probs=65.8
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
+|+.|+.-++....-...+.+.|+..|+++..+...++.+-.+.....-.. ..+.+....+.|+|+-.|| +...+.
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~-~~~~~~~~~r~d~IIavGG-Gsv~D~-- 107 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIY-DALLEAGLDRSDTLIALGG-GVIGDL-- 107 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHH-HHHHHcCCCCCCEEEEEcC-cHHHHH--
Confidence 677777766665554445667788888877654333321111111000000 0111112235699998887 323222
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCC
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSR 310 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~ 310 (344)
-.++...+.++.++.++-+-. ++... -..++.+-.++..+ .+.........++.|-.++.+.
T Consensus 108 ----aK~iA~~~~~gip~i~IPTT~---~s~~ds~~~~k~~i~~~~~K-~~~g~~~~P~~vi~Dp~l~~tl 170 (358)
T PRK00002 108 ----AGFAAATYMRGIRFIQVPTTL---LAQVDSSVGGKTGINHPLGK-NLIGAFYQPKAVLIDLDFLKTL 170 (358)
T ss_pred ----HHHHHHHhcCCCCEEEcCchh---hhccccCcCCceecCCcccc-eeeeecCCCceEEEcHHHHccC
Confidence 233344466788998888742 33311 11222222222222 1222334556667776665443
No 269
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=56.06 E-value=10 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
++..+.+.|+++.++|.+|.+||.|-. +|.+.
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~~ 335 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQ-MLGKE 335 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhhh
Confidence 456678899999999999999999995 88765
No 270
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=56.03 E-value=25 Score=30.00 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=52.1
Q ss_pred hhhcccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC------CCCEEcCCCCCcHHHHHHHHHHHHcC
Q 019238 53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------DGKVVTTRGPGTPMEFVVALVEQLYG 124 (344)
Q Consensus 53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~------dg~~iT~~g~~~~~~~~~~lv~~~~g 124 (344)
++.++.-.+.++.||....+.||..-=.-.||. ||+.||| .|.+++-+ |. ++|+...-++.++|
T Consensus 96 PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~------GLl~gKKv~~l~srGG~y~~~-p~-~~~~~~~YLr~ilg 165 (202)
T COG1182 96 PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPV------GLLTGKKVLILTSRGGIYSEG-PA-SMDHGEPYLRTILG 165 (202)
T ss_pred cccccCCCHHHHHHHHHHhcCCceEEeccCCcc------cccCCceEEEEECCCCcCCCC-cc-chhhhHHHHHHHhh
Confidence 456666689999999999999999888889995 9999988 77888665 66 48888888877664
No 271
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=54.78 E-value=99 Score=27.56 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=50.1
Q ss_pred CCeEEEEeCCCcc---------hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC
Q 019238 160 SPQILVPIANGSE---------EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (344)
Q Consensus 160 ~~~v~ill~~g~~---------~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG 230 (344)
.++|+++..+|-. ...+..+...|+.. |++..+.... .++ |+++|+|+|+|
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~------------------~~I-P~~~d~Lvi~~ 205 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLAN------------------EEI-PDDADVLVIAG 205 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcc------------------ccc-CCCCCEEEEEC
Confidence 5778877766544 46778888888888 8876555432 223 46789999998
Q ss_pred CccchHhhhcCHHHHHHHHHHHhcCCc-EEEEcc
Q 019238 231 GLGGAQAFAKSKKLVNMLKKQKESNRP-YGAICA 263 (344)
Q Consensus 231 G~~~~~~l~~~~~l~~~l~~~~~~~k~-I~aic~ 263 (344)
... . -.+.-+.-|.++..+|.. +..+..
T Consensus 206 P~~---~--ls~~e~~~l~~yl~~GG~ll~~~d~ 234 (271)
T PF09822_consen 206 PKT---D--LSEEELYALDQYLMNGGKLLILLDP 234 (271)
T ss_pred CCC---C--CCHHHHHHHHHHHHcCCeEEEEECC
Confidence 632 1 133445566666655554 444443
No 272
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=53.92 E-value=14 Score=29.27 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
.+.|+++|-|... .++....++++++.++.|.|.|+++=+
T Consensus 44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtCA 83 (131)
T PF01058_consen 44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTCA 83 (131)
T ss_dssp TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHHH
T ss_pred cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCcc
Confidence 5789999999852 133677999999999999999998764
No 273
>PRK07567 glutamine amidotransferase; Provisional
Probab=53.33 E-value=18 Score=31.94 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 64 ESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.++++...++++++.+||-|.- +|+.+
T Consensus 83 ~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 83 SGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred HHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 3445555589999999999995 99987
No 274
>PRK13054 lipid kinase; Reviewed
Probab=52.85 E-value=94 Score=28.23 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCc-chhHHHHHHHHHHhcCCeEEEEEeCC-CceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVAD-KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 159 ~~~~v~ill~~g~-~~~e~~~~~~~l~~~~~~v~~~s~~~-~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
+|+|+.+++-+.. ....+......|.+.++++++...+. + . ......+.....+|.|++.||.+..
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~-~----------a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKG-D----------AARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCC-c----------HHHHHHHHHHcCCCEEEEECCccHH
Confidence 3577777776644 23445566777888888876544332 1 0 0001112222468999999997643
No 275
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=52.78 E-value=14 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 62 VLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+.+.|++..++|++++++|.|+. ++.+.
T Consensus 102 ~l~~~l~~~~~~g~~i~G~SAGa~-i~~~~ 130 (212)
T cd03146 102 GLDAILKAALERGVVYIGWSAGSN-CWFPS 130 (212)
T ss_pred CHHHHHHHHHHCCCEEEEECHhHH-hhCCC
Confidence 677888888999999999999995 77764
No 276
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=52.37 E-value=54 Score=29.19 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=49.4
Q ss_pred CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh------------
Q 019238 170 GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA------------ 237 (344)
Q Consensus 170 g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~------------ 237 (344)
...+.....+.+.|...|+++.....-+..+ . .|. ..+... ..++|+||+.||.++..+
T Consensus 17 ~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~-~-----~I~--~~l~~a-~~r~D~vI~tGGLGPT~DDiT~e~vAka~g 87 (255)
T COG1058 17 RIVDTNAAFLADELTELGVDLARITTVGDNP-D-----RIV--EALREA-SERADVVITTGGLGPTHDDLTAEAVAKALG 87 (255)
T ss_pred ceecchHHHHHHHHHhcCceEEEEEecCCCH-H-----HHH--HHHHHH-HhCCCEEEECCCcCCCccHhHHHHHHHHhC
Confidence 4566788889999999999887666544311 0 000 012222 245999999999764321
Q ss_pred --hhcCHHHHHHHHHHHhc
Q 019238 238 --FAKSKKLVNMLKKQKES 254 (344)
Q Consensus 238 --l~~~~~l~~~l~~~~~~ 254 (344)
+..|+..+++|++++.+
T Consensus 88 ~~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 88 RPLVLDEEALAMIEEKYAK 106 (255)
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 24577889999998864
No 277
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=51.90 E-value=32 Score=31.25 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCeEEEEeC-CCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceee-eccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIA-NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~-~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
++.||+||-. |.=...| ..+...|.... ++++++....- ..+ ++....-.--.+++++....||.+||.|..
T Consensus 34 rpL~I~ILNLMP~K~~TE-~Q~lRlL~ntplqv~i~~~~~~sh-~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAP-- 109 (300)
T TIGR01001 34 RPLEILILNLMPKKIETE-NQFLRLLSNSPLQVNITLLRTDSR-KSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAP-- 109 (300)
T ss_pred cceeEEEEecCCccHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCC--
Confidence 5688888754 4445555 44666776555 44666665441 111 111111111235777777899999999963
Q ss_pred hHhhh-cC----HHHHHHHHHHHhcCCcEEEEcchhh
Q 019238 235 AQAFA-KS----KKLVNMLKKQKESNRPYGAICASPA 266 (344)
Q Consensus 235 ~~~l~-~~----~~l~~~l~~~~~~~k~I~aic~G~~ 266 (344)
.+.+. ++ +.+.+.+....++..-...+|=|+.
T Consensus 110 vE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAq 146 (300)
T TIGR01001 110 VELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQ 146 (300)
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 22221 11 3455555555556677888998753
No 278
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=51.75 E-value=37 Score=28.80 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=52.5
Q ss_pred CeEEEEeCCCc--chhHHHHHHHHHHh-cCCeEEEEEeCCCce--eeeccceee---eeccccccccCCCccEEEEcCCc
Q 019238 161 PQILVPIANGS--EEMEAVIIIDILRR-AKANVVVASVADKLE--ILASCQVKL---VADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 161 ~~v~ill~~g~--~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~--v~~~~g~~v---~~~~~~~~~~~~~~D~liipGG~ 232 (344)
+||+|+-+... ...=+-.+.+.+.. .|.+++++......+ +....+... .+....+++ .++|.|++....
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsPt 79 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIFGTPT 79 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEEEecc
Confidence 58888887644 33333355666776 788888887643111 000001000 011124555 689999886542
Q ss_pred cchHhhhcCHHHHHHHHHHH-------hcCCcEEEEcchh
Q 019238 233 GGAQAFAKSKKLVNMLKKQK-------ESNRPYGAICASP 265 (344)
Q Consensus 233 ~~~~~l~~~~~l~~~l~~~~-------~~~k~I~aic~G~ 265 (344)
. .-.-.+.+..|+.+.. -.+|+++.++++.
T Consensus 80 y---~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 116 (200)
T PRK03767 80 R---FGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTG 116 (200)
T ss_pred c---CCCchHHHHHHHHHhccccccCCccCCEEEEEEeCC
Confidence 1 1112445566666542 2378877777653
No 279
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=51.37 E-value=7.1 Score=31.96 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=29.0
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
..+||.|+|..- .+...-.+.+..||++..-+||.|+-+|+
T Consensus 71 ~~~YD~I~lG~P---vW~~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 71 LSDYDTIFLGTP---VWWGTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp GGG-SEEEEEEE---EETTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred cccCCEEEEech---HHcCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 378999999542 22223466889999988778999998886
No 280
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=51.15 E-value=19 Score=32.85 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCCeEEEEeC-CCcchhHHHHHHHHHHhcC--CeEEEEEeCCCceeee-ccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIA-NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~-~g~~~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~-~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
++.||+||-. |.-...| ..+..+|.... ++++++.+..- ..+. +....-.--.+++++....||++||.|..
T Consensus 33 rpL~I~IlNLMP~K~~TE-~Q~lrlL~~tplqv~v~f~~~~sh-~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAP-- 108 (298)
T PF04204_consen 33 RPLKIGILNLMPDKEETE-RQFLRLLSNTPLQVEVTFLYPASH-KSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAP-- 108 (298)
T ss_dssp --EEEEEE---SSHHHHH-HHHHHHCCSSSS-EEEEEE--S------SS-HHHHHHHEE-HHHCTTS-EEEEEE---T--
T ss_pred cceEEEEEecccchHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCC--
Confidence 5678888754 3334444 34555555554 45556554431 1111 11111111235777777899999999863
Q ss_pred hHhhh-c----CHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 235 AQAFA-K----SKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 235 ~~~l~-~----~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
.+.+. + =+.+.+.+.....+......+|=|+..
T Consensus 109 vE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 109 VEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp TTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 22221 1 134555555555667788999988644
No 281
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=49.88 E-value=70 Score=26.13 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCCeEEEEeCCCcch---hHHHHHHHHHHhcC---CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238 159 NSPQILVPIANGSEE---MEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 159 ~~~~v~ill~~g~~~---~e~~~~~~~l~~~~---~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
.+.||+|+...-... .-+....+.|.+.| .+++++.+.|- .-+.+.... +... .+||+++..|-.
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~-l~~~--~~~DavIalG~V 81 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGA------FEIPLAAKK-LAES--GKYDAVIALGAV 81 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCH------HHHHHHHHH-HHHc--CCCCEEEEEeeE
Confidence 457999999875443 55677888999888 56677766552 111222222 2222 579999998842
Q ss_pred --c--chHhhhcCHHHHHHHHHHHhcCCcEE
Q 019238 233 --G--GAQAFAKSKKLVNMLKKQKESNRPYG 259 (344)
Q Consensus 233 --~--~~~~l~~~~~l~~~l~~~~~~~k~I~ 259 (344)
+ ....+..+.-...+.+-..+.++||+
T Consensus 82 IrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 82 IRGETPHFDYVANEVAKGLADVSLETGVPVG 112 (154)
T ss_pred EcCCCchHHHHHHHHHHHHHHHHhccCCCEE
Confidence 1 12233334444455555567888865
No 282
>PRK13566 anthranilate synthase; Provisional
Probab=49.61 E-value=42 Score=34.78 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
..+..++++..++++||.+||-|.- +|+.+
T Consensus 585 ~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 585 FDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred CCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 3468999999999999999999995 88877
No 283
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=48.69 E-value=51 Score=31.32 Aligned_cols=30 Identities=20% Similarity=-0.032 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+...+.++++.+.+.++.+||-|-- +|+.+
T Consensus 250 ~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a 279 (382)
T CHL00197 250 HYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA 279 (382)
T ss_pred HHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence 4566777777777899999999995 77754
No 284
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=48.45 E-value=1.6e+02 Score=27.74 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=92.0
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
..|+.|+.-+.....-.....+.|...++.+..+...+|...++-..+.-.-+. +-+...++-|.||-.|| +...
T Consensus 33 ~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~-ll~~~~~R~s~iialGG-Gvig--- 107 (360)
T COG0337 33 GRKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDA-LLEAGLDRKSTLIALGG-GVIG--- 107 (360)
T ss_pred CCeEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHH-HHHcCCCCCcEEEEECC-hHHH---
Confidence 458999988888888777888899999998855555554455543322111111 11223355677777777 3222
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcC-CCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCcccHHHH
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGPGTSMEF 318 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aG-lL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~~~~~~~ 318 (344)
.+..|....|.+|-...-+=+- + ||+-- -+-||. ..+...-..+-..+++++.|..|-.....=.......-
T Consensus 108 ---DlaGF~Aaty~RGv~fiqiPTT--L-LAqVDSSVGGKt-gIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G 180 (360)
T COG0337 108 ---DLAGFAAATYMRGVRFIQIPTT--L-LAQVDSSVGGKT-GINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAG 180 (360)
T ss_pred ---HHHHHHHHHHHcCCCeEeccch--H-HHHhhccccccc-ccCCCCCcceeecccCCcEEEEchHHhccCCHHHHHHh
Confidence 3577889999999999888874 5 88733 233433 33333333444567777777777655544433333333
Q ss_pred HHHHHH
Q 019238 319 ALAIVE 324 (344)
Q Consensus 319 ~~~li~ 324 (344)
+-++|+
T Consensus 181 ~AEvIK 186 (360)
T COG0337 181 MAEVIK 186 (360)
T ss_pred HHHHHH
Confidence 444443
No 285
>PLN02204 diacylglycerol kinase
Probab=48.10 E-value=40 Score=33.92 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=40.9
Q ss_pred CCCeEEEEeCC----CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIAN----GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~~----g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
++|++.|++-| |-....+-.+...|.+++++++++-.+.. |.....-..+.+.....||.||+.||.+.
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a-------ghA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA-------GHAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc-------chHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 56888888877 22222233578889999988776554431 11111111122222367999999999764
Q ss_pred h
Q 019238 235 A 235 (344)
Q Consensus 235 ~ 235 (344)
.
T Consensus 231 ~ 231 (601)
T PLN02204 231 F 231 (601)
T ss_pred H
Confidence 3
No 286
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=48.04 E-value=4.9 Score=28.50 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=40.7
Q ss_pred ccCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-----------CCCEEcCCCCCcHHH
Q 019238 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------DGKVVTTRGPGTPME 113 (344)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------dg~~iT~~g~~~~~~ 113 (344)
+..++++...-+.|.+.+..-.+.|+-. ++++...||+..+ +||+--|.|....++
T Consensus 5 l~~~~~~~~iq~af~~~~a~QCGfCtpG-~im~~~~ll~~~~~p~~~ei~~al~gnlCRCTgY~~I~~ 71 (75)
T PF01799_consen 5 LASDGELHPIQQAFVEHGAVQCGFCTPG-MIMAAYALLRRNPDPTEEEIREALSGNLCRCTGYRPIVE 71 (75)
T ss_dssp SSBTTB--HHHHHHHHTT--SSSSSHHH-HHHHHHHHHHHSSS-CHHHHHHHTTTS--SSSTSHHHHH
T ss_pred CCCCCCcCHHHHHHHHhCCCcCCcchHH-HHHHHHHHhhcccchhhHHHHHHHHcCccCCCCcHHHHH
Confidence 3457788888888999999999999999 5999999998544 899998888765443
No 287
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=47.74 E-value=52 Score=27.93 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=40.0
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC-----CCchhhhcccCChHHHHHHHHHhhCCCEEEEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (344)
..+.|++.++++.++-.+.. ... .+.+.+.. ||...+.+ .......++.+ ++++|+.+|
T Consensus 15 l~~~l~~~g~~v~v~~~~~~-~~~-----------~~~~~~~d~iIlsgGP~~p~~---~~~~~~~i~~~-~~~~PvLGI 78 (195)
T PRK07649 15 LVQFLGELGQELVVKRNDEV-TIS-----------DIENMKPDFLMISPGPCSPNE---AGISMEVIRYF-AGKIPIFGV 78 (195)
T ss_pred HHHHHHHCCCcEEEEeCCCC-CHH-----------HHhhCCCCEEEECCCCCChHh---CCCchHHHHHh-cCCCCEEEE
Confidence 35667888888888886521 110 01111111 55333332 22344566643 578999999
Q ss_pred chhHHHHHHHc
Q 019238 81 CVFLAVALGSW 91 (344)
Q Consensus 81 C~g~~~~La~a 91 (344)
|-|.- +|+.+
T Consensus 79 ClG~Q-lla~~ 88 (195)
T PRK07649 79 CLGHQ-SIAQV 88 (195)
T ss_pred cHHHH-HHHHH
Confidence 99995 88875
No 288
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.68 E-value=1.6e+02 Score=24.24 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=62.6
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCcee----------eeccceeeeecccccccc--CCCccEE
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEI----------LASCQVKLVADMLIDEAA--KLSYDLI 226 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v----------~~~~g~~v~~~~~~~~~~--~~~~D~l 226 (344)
..++|.|++-+|-+--+-......|...|+++.++........ ....|..+.......+.. ..++|+|
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 4689999999999999999999999999999988544321011 112344444332222221 1256666
Q ss_pred EEcC-CccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCC
Q 019238 227 VLPG-GLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (344)
Q Consensus 227 iipG-G~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~ 276 (344)
|=.= |.+ ... .-.+.+.++++...+...++.|+.--+-+ =+..|-..
T Consensus 104 IDal~G~G-~~~-~l~~~~~~~i~~iN~~~~~viAiDiPSGl-~~dtG~~~ 151 (169)
T PF03853_consen 104 IDALFGTG-FSG-PLRGPIAELIDWINASRAPVIAIDIPSGL-DADTGEVD 151 (169)
T ss_dssp EEES-STT-GGS-CGSTCHHHHHHHHHHHCSEEEEESS-TTC-BTTTB-BS
T ss_pred EEecccCC-CCC-CcCHHHHHHHHHHhccCCcEEEecCCCCc-cCCCCCcC
Confidence 5321 111 111 12233555555555558889999854322 45555443
No 289
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=46.56 E-value=1.5e+02 Score=27.75 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccC-CCccEEEEcCCccchHhh
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK-LSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~-~~~D~liipGG~~~~~~l 238 (344)
.+|+.|+.-++....-...+.+.|...|+++..+..+++.+-.+.....-..+ .+.+... .++|+|+-.|| +...+
T Consensus 26 ~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~-~l~~~~~~r~~d~IVaiGG-G~v~D- 102 (354)
T cd08199 26 SGRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVD-ALDAFGISRRREPVLAIGG-GVLTD- 102 (354)
T ss_pred CCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCCCCEEEEECC-cHHHH-
Confidence 46777777556654434467788888888876544333312111111100000 1111111 23499997777 22222
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhc-CCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeC
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTS 309 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~a-GlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~ 309 (344)
+-.++...+.+|.++..+.+- + +|.. +-..++....+...+..+ ........++.|-.++..
T Consensus 103 -----~ak~~A~~~~rg~p~i~VPTT--~-lA~vD~~~g~K~~i~~~~~kn~i-g~~~~P~~viiD~~~l~t 165 (354)
T cd08199 103 -----VAGLAASLYRRGTPYVRIPTT--L-VGLIDAGVGIKTGVNFGGYKNRL-GAYHPPTLTLLDRSFLAT 165 (354)
T ss_pred -----HHHHHHHHhcCCCCEEEEcCc--c-ceeeecCCCCceEEeCCCCcccc-ccCCCCCEEEEcHHHHhh
Confidence 334555557779999999984 2 3321 222334444443322222 233445566677665543
No 290
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=46.56 E-value=1.3e+02 Score=26.97 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=38.7
Q ss_pred CCeEEEEeCC--Ccc--hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 160 SPQILVPIAN--GSE--EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 160 ~~~v~ill~~--g~~--~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
|+|+++++-| |-. ...+..+.+.|.+.++++.+...+...... .+ ........+|.|++.||.+.
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~-----~~-----~~~~~~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAA-----RY-----VEEARKFGVDTVIAGGGDGT 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHH-----HH-----HHHHHhcCCCEEEEECCCCh
Confidence 4688888888 542 223445677888889888776655420110 00 11111245899999999664
No 291
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=45.50 E-value=24 Score=30.97 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCC
Q 019238 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL 93 (344)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl 93 (344)
+...+.+.|++..++|+++++.|+|+. +++....
T Consensus 98 ~~~gl~~~l~~~~~~G~~~~G~SAGAi-i~~~~i~ 131 (233)
T PRK05282 98 YERGLLAPIREAVKNGTPYIGWSAGAN-VAGPTIR 131 (233)
T ss_pred HHCCcHHHHHHHHHCCCEEEEECHHHH-hhhccce
Confidence 345677889999999999999999995 7665443
No 292
>PRK13337 putative lipid kinase; Reviewed
Probab=45.37 E-value=1.3e+02 Score=27.42 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCc--c--hhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 160 SPQILVPIANGS--E--EMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 160 ~~~v~ill~~g~--~--~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
++|+.+++-|.. . ...+......|...++++++...+
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~ 41 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT 41 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 367888777732 1 223445667788888887765554
No 293
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=44.97 E-value=1.4e+02 Score=22.79 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=49.1
Q ss_pred CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (344)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~ 247 (344)
.-|.+..-...+...|...|..+....... .+ . ...... .+-|++|+.+-.+ .++.+.++
T Consensus 7 G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~--~~--------~--~~~~~~--~~~d~vi~iS~sG------~t~~~~~~ 66 (128)
T cd05014 7 GVGKSGHIARKIAATLSSTGTPAFFLHPTE--AL--------H--GDLGMV--TPGDVVIAISNSG------ETDELLNL 66 (128)
T ss_pred eCcHhHHHHHHHHHHhhcCCCceEEcccch--hh--------c--cccCcC--CCCCEEEEEeCCC------CCHHHHHH
Confidence 345555555566666777776666553211 10 0 012222 4558888887533 57788999
Q ss_pred HHHHHhcCCcEEEEcchh
Q 019238 248 LKKQKESNRPYGAICASP 265 (344)
Q Consensus 248 l~~~~~~~k~I~aic~G~ 265 (344)
++...+++.++.+++...
T Consensus 67 ~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 67 LPHLKRRGAPIIAITGNP 84 (128)
T ss_pred HHHHHHCCCeEEEEeCCC
Confidence 999999999999999753
No 294
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=44.59 E-value=25 Score=31.25 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
|...+++++...+++++|.+||-|.- +|+.+
T Consensus 93 D~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 93 DLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 34567999999999999999999995 88765
No 295
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.80 E-value=1.4e+02 Score=30.07 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=56.5
Q ss_pred CCCCeEEEEeCCCc-chhH-HHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 158 DNSPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 158 ~~~~~v~ill~~g~-~~~e-~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
.+++||+|+.-++- ...+ +..+.+.|...++++.+-..... .+... ..-... ...+. .+.|.+++.||.+
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~~--~~~~~~-~~~~~--~~~dlvi~lGGDG-- 359 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKNR--LNEECN-LIDDI--EEISHIISIGGDG-- 359 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhccc--cccccc-ccccc--cCCCEEEEECCcH--
Confidence 35789999877654 2333 33456667777877765432221 11100 000000 01112 3579999999954
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~ 271 (344)
.++.-.+.+...+.||.+|-.|..-+|+.
T Consensus 360 -------T~L~aa~~~~~~~~PilGin~G~lGFL~~ 388 (569)
T PRK14076 360 -------TVLRASKLVNGEEIPIICINMGTVGFLTE 388 (569)
T ss_pred -------HHHHHHHHhcCCCCCEEEEcCCCCCcCcc
Confidence 34556666667789999999987444543
No 296
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.36 E-value=1.8e+02 Score=28.77 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCeEEEEeCCCcc-hhHHH-HHHHHHH-hcCCeEEEEEeCCCceeeec---ccee-e-eeccccccccCCCccEEEEcC
Q 019238 159 NSPQILVPIANGSE-EMEAV-IIIDILR-RAKANVVVASVADKLEILAS---CQVK-L-VADMLIDEAAKLSYDLIVLPG 230 (344)
Q Consensus 159 ~~~~v~ill~~g~~-~~e~~-~~~~~l~-~~~~~v~~~s~~~~~~v~~~---~g~~-v-~~~~~~~~~~~~~~D~liipG 230 (344)
.+++|+|+.-++-. ..++. .+.+.|. ..|+++.+-..... ..... .+.. . .+...+.+. ..++|++|+.|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIsiG 270 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLL-HTKVDLVITLG 270 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhc-ccCCCEEEEEC
Confidence 47899999877553 33332 3455566 46777655332211 11100 0100 0 000111111 13589999999
Q ss_pred CccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 231 GLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 231 G~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
|.+ .++.-.+.+.....||.+|-.|..-+|+
T Consensus 271 GDG---------TlL~Aar~~~~~~iPILGIN~G~LGFLt 301 (508)
T PLN02935 271 GDG---------TVLWAASMFKGPVPPVVPFSMGSLGFMT 301 (508)
T ss_pred CcH---------HHHHHHHHhccCCCcEEEEeCCCcceec
Confidence 954 3455556666678899999888543344
No 297
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.12 E-value=60 Score=28.53 Aligned_cols=85 Identities=6% Similarity=-0.047 Sum_probs=46.6
Q ss_pred eEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 162 ~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
+|++++.+ .|...-...+.+.+++.|+++.+...... + . .....++.......|+|++.+..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~-~-~-------~~~~~i~~~~~~~~Dgiii~~~~------ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGD-L-T-------KQIADVEDLLTRGVNVLIINPVD------ 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC-H-H-------HHHHHHHHHHHcCCCEEEEecCC------
Confidence 46666653 44555556777888888998876544321 1 0 00112333334578999986531
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
.+.+.+.+++..+++.+|..+..
T Consensus 66 --~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 66 --PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred --ccchHHHHHHHHHCCCCEEEecC
Confidence 11223345555566777666653
No 298
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=42.94 E-value=69 Score=25.74 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCCc---chhHHHHHHHHHHhcCCe---EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238 159 NSPQILVPIANGS---EEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 159 ~~~~v~ill~~g~---~~~e~~~~~~~l~~~~~~---v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
...||+|+...-. .+.-+....+.|.+.|.. ++++.+.|- .-+.+...... . ..+||+++..|-.
T Consensus 6 ~~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~l~-~--s~~~DavIaLG~V 76 (141)
T PLN02404 6 EGLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGS------FEIPVVAQRLA-K--SGKYDAILCIGAV 76 (141)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcH------HHHHHHHHHHH-h--cCCCCEEEEEEEE
Confidence 4589999997633 344455778888888864 666666552 11112222111 1 2579999988842
Q ss_pred ----cchHhhhcCHHHHHHHHHHHhcCCcEE
Q 019238 233 ----GGAQAFAKSKKLVNMLKKQKESNRPYG 259 (344)
Q Consensus 233 ----~~~~~l~~~~~l~~~l~~~~~~~k~I~ 259 (344)
.....+..+.-...+.+-..+.++||+
T Consensus 77 IrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 107 (141)
T PLN02404 77 IRGDTTHYDAVANSAASGVLSAGLNSGVPCI 107 (141)
T ss_pred EeCCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 222233344444555555567788865
No 299
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=42.40 E-value=77 Score=26.86 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=49.1
Q ss_pred eEEEEeCCCc--chhHHHHHHHHHHhc-CCeEEEEEeCCCc--eeee-ccc--eeeeeccccccccCCCccEEEEcCCcc
Q 019238 162 QILVPIANGS--EEMEAVIIIDILRRA-KANVVVASVADKL--EILA-SCQ--VKLVADMLIDEAAKLSYDLIVLPGGLG 233 (344)
Q Consensus 162 ~v~ill~~g~--~~~e~~~~~~~l~~~-~~~v~~~s~~~~~--~v~~-~~g--~~v~~~~~~~~~~~~~~D~liipGG~~ 233 (344)
||+|+-+... ...=.-.+.+.++.. |.++++....... .+.. ... ....+....+++ .++|+|++.....
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~GSPty 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIFGTPTR 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEEEeccc
Confidence 6777766643 222233455566664 8888776653310 0000 000 001111223444 6799999966421
Q ss_pred chHhhhcCHHHHHHHHHHH-------hcCCcEEEEcchh
Q 019238 234 GAQAFAKSKKLVNMLKKQK-------ESNRPYGAICASP 265 (344)
Q Consensus 234 ~~~~l~~~~~l~~~l~~~~-------~~~k~I~aic~G~ 265 (344)
. . .-.+.+..|+.+.. -.+|+.+.++++.
T Consensus 80 ~-g--~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 115 (197)
T TIGR01755 80 F-G--NMASQMRNFLDQTGGLWASGALVGKVGSVFTSTG 115 (197)
T ss_pred c-c--CccHHHHHHHHhccccccccccCCCEEEEEEECC
Confidence 1 1 12334555555542 2378888888764
No 300
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.28 E-value=70 Score=25.22 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCeEEEEeCCCcchhHHHHHHH-HHHhcCCeEEEEEeCCC----c-eeeeccceeeeeccccccccCCCccEEEEcCCcc
Q 019238 160 SPQILVPIANGSEEMEAVIIID-ILRRAKANVVVASVADK----L-EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~-~l~~~~~~v~~~s~~~~----~-~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~ 233 (344)
--||++.-.+|++.. ++.... ..+.. + .+..++.. + -..+..|+.+. ..++. ...|+|++-||.+
T Consensus 26 ~eki~fvG~~GvCtP-FAeL~~favRDk--e-~~fipd~d~ek~rkl~~~d~G~ql~---e~e~~--n~aDvvVLlGGLa 96 (154)
T COG4090 26 EEKIVFVGCPGVCTP-FAELLAFAVRDK--E-QYFIPDLDFEKARKLELTDHGYQLG---EREEL--NSADVVVLLGGLA 96 (154)
T ss_pred cceEEEecCCccccc-HHHHHHHHhhch--h-eeecCCcChhHhheeeeeccceecC---Ccccc--ccccEEEEEcccc
Confidence 467787778887642 222111 12211 1 22333321 0 22344565551 23333 4579999999975
Q ss_pred chHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCC
Q 019238 234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274 (344)
Q Consensus 234 ~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGl 274 (344)
.+..-.......+++.+. .++.+.++|--. + ..++|.
T Consensus 97 MP~~gv~~d~~kel~ee~--~~kkliGvCfm~-m-F~ragW 133 (154)
T COG4090 97 MPKIGVTPDDAKELLEEL--GNKKLIGVCFMN-M-FERAGW 133 (154)
T ss_pred cCcCCCCHHHHHHHHHhc--CCCceEEeeHHH-H-HHHcCc
Confidence 433323445566677643 356799999864 4 677773
No 301
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.16 E-value=73 Score=27.78 Aligned_cols=34 Identities=9% Similarity=-0.102 Sum_probs=22.3
Q ss_pred eEEEEeC---CCcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 162 QILVPIA---NGSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 162 ~v~ill~---~g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
+|++++. +.|...-+..+.+.+++.|+++.+...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDA 37 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4677765 234444455777788888999877644
No 302
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.96 E-value=1.2e+02 Score=27.19 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=28.2
Q ss_pred CccEEEEcCCccchHhhhcCHHHHHHHHHHHh--cCCcEEEEcchhhhhhh
Q 019238 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE--SNRPYGAICASPALVLE 270 (344)
Q Consensus 222 ~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~--~~k~I~aic~G~~~lLa 270 (344)
++|.+++.||.+ .++.-++.+.. .+.||.+|-.|..-+|+
T Consensus 35 ~~Dlvi~iGGDG---------T~L~a~~~~~~~~~~iPilGIN~G~lGFL~ 76 (265)
T PRK04885 35 NPDIVISVGGDG---------TLLSAFHRYENQLDKVRFVGVHTGHLGFYT 76 (265)
T ss_pred CCCEEEEECCcH---------HHHHHHHHhcccCCCCeEEEEeCCCceecc
Confidence 579999999954 34555666555 58899999888644444
No 303
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=41.63 E-value=1.2e+02 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.+||+||+...... . -++.-.+-|+++.++|+.+.++..+
T Consensus 51 ~~~Dvvv~~~~~~~--~--l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 51 KGYDVVVFYNTGGD--E--LTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp CT-SEEEEE-SSCC--G--S-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred cCCCEEEEECCCCC--c--CCHHHHHHHHHHHHcCCCEEEEccc
Confidence 78999999876321 1 2556677778888899999999844
No 304
>PLN02834 3-dehydroquinate synthase
Probab=41.09 E-value=2.1e+02 Score=27.78 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=69.1
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEE--EeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVA--SVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~--s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
+|+.|+.-++....-...+.+.|+..|+++.+. ...++..-.+...+.- .-..+.+...++.|+||-.|| +...+
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~-~~~~l~~~~~dr~~~VIAiGG-Gsv~D- 177 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMK-VFDKALESRLDRRCTFVALGG-GVIGD- 177 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHH-HHHHHHhcCCCcCcEEEEECC-hHHHH-
Confidence 678777766666654445677888888765542 2222211111100000 000111111234568888887 32322
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCC-CCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCCc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL-LKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRGP 312 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGl-L~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g~ 312 (344)
+-.++...+.+|.++..+.+-. ++..-- ..++..--++..+. +-..++....++.|-.++.+...
T Consensus 178 -----~ak~~A~~y~rgiplI~VPTTl---lA~vDss~ggK~~i~~~~~KN-lig~f~~P~~VivDp~~l~tlP~ 243 (433)
T PLN02834 178 -----MCGFAAASYQRGVNFVQIPTTV---MAQVDSSVGGKTGVNHPLGKN-MIGAFYQPQCVLIDTDTLATLPD 243 (433)
T ss_pred -----HHHHHHHHhcCCCCEEEECCcC---CeEEecCCCceeEEecCCccc-ccccccCCCEEEEcHHHHhhCCH
Confidence 2334444567799999999852 433221 12233333333322 33345566677777766654433
No 305
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=40.97 E-value=43 Score=31.64 Aligned_cols=105 Identities=8% Similarity=-0.004 Sum_probs=60.6
Q ss_pred HHHHHHHHcChhHHHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEE
Q 019238 115 VVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVAS 194 (344)
Q Consensus 115 ~~~lv~~~~g~~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s 194 (344)
+.++++++.|...++.... ..+....|+...-.+.+ .+...||+++--||.=..=......+|+..++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~ 75 (372)
T PLN00118 2 AAQLLRRLLGNRLAQILGA----SSSSSGAFSSSARAFSS--SSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEE 75 (372)
T ss_pred hHHHHHHHhcccchhhhcc----ccccCCCCcHHHHhhcc--CCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEE
Confidence 4577888888766544222 11111112111111111 12347899999999876666678888888776665555
Q ss_pred eCCCceeeeccceeeeeccccccccCCCccEEEE
Q 019238 195 VADKLEILASCQVKLVADMLIDEAAKLSYDLIVL 228 (344)
Q Consensus 195 ~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~lii 228 (344)
..-|.......|- ..|+.+++.+ .++|+++.
T Consensus 76 ~~~G~~~~~~~G~-~lp~~~l~~~--~~~da~L~ 106 (372)
T PLN00118 76 HYVGTTVDPRTGS-FLTWESLESV--RRNKVGLK 106 (372)
T ss_pred EeCcHHHHHhcCC-cCCHHHHHHH--HHCCEEEE
Confidence 4433232233453 3466678888 78999988
No 306
>PRK00861 putative lipid kinase; Reviewed
Probab=40.19 E-value=1.6e+02 Score=26.70 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCeEEEEeCCCc---c-hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 160 SPQILVPIANGS---E-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 160 ~~~v~ill~~g~---~-~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
++++.|++-|.. . ..+...+...|+. ++++++...+.... ...-..+.....+|.|++.||.+..
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~----------a~~~a~~~~~~~~d~vv~~GGDGTl 70 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTTPEIG----------ADQLAQEAIERGAELIIASGGDGTL 70 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEccCCCC----------HHHHHHHHHhcCCCEEEEECChHHH
Confidence 468888877632 1 2233444555655 35555443332100 0111112222567888888886533
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
.. -+.....++.+++-+=.|+
T Consensus 71 ~e---------vv~~l~~~~~~lgviP~GT 91 (300)
T PRK00861 71 SA---------VAGALIGTDIPLGIIPRGT 91 (300)
T ss_pred HH---------HHHHHhcCCCcEEEEcCCc
Confidence 22 2233333455566555554
No 307
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=39.50 E-value=79 Score=30.50 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcC-----CeEEEEEeCCCceeeecc-ceeee-eccccccccCCCccEEEEcCC
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASC-QVKLV-ADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~-g~~v~-~~~~~~~~~~~~~D~liipGG 231 (344)
.+++|||+..+ .-+.+.|+++... +++.++.. .|.+.+ +..|. .-..++.. .++|+|||.=|
T Consensus 134 ~p~~IGVITS~-----tgAairDIl~~~~rR~P~~~viv~pt----~VQG~~A~~eIv~aI~~an~~--~~~DvlIVaRG 202 (440)
T COG1570 134 FPKKIGVITSP-----TGAALRDILHTLSRRFPSVEVIVYPT----LVQGEGAAEEIVEAIERANQR--GDVDVLIVARG 202 (440)
T ss_pred CCCeEEEEcCC-----chHHHHHHHHHHHhhCCCCeEEEEec----cccCCCcHHHHHHHHHHhhcc--CCCCEEEEecC
Confidence 46999999987 2234455554432 44444332 222211 11111 11122333 55999999844
Q ss_pred ccchHhh--hcCHHHHHHHHHHHhcCCc-EEEEcchhhhhhhhcCCCCCCeeeeCcCchh
Q 019238 232 LGGAQAF--AKSKKLVNMLKKQKESNRP-YGAICASPALVLEPHGLLKGKKATAFPAMCN 288 (344)
Q Consensus 232 ~~~~~~l--~~~~~l~~~l~~~~~~~k~-I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~ 288 (344)
-++.+++ ++++.+. +..++...| |-|++|=+-+.|+ -+..+.++.|+....|
T Consensus 203 GGSiEDLW~FNdE~va---RAi~~s~iPvISAVGHEtD~tL~--DfVAD~RApTPTaAAE 257 (440)
T COG1570 203 GGSIEDLWAFNDEIVA---RAIAASRIPVISAVGHETDFTLA--DFVADLRAPTPTAAAE 257 (440)
T ss_pred cchHHHHhccChHHHH---HHHHhCCCCeEeecccCCCccHH--HhhhhccCCCchHHHH
Confidence 3556665 4566544 666666777 5677777655443 3456777777655444
No 308
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=39.47 E-value=47 Score=26.39 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=47.1
Q ss_pred HHHHHHhcCCeEEEEEeCC--------Cceeeeccce-eeeecccccc--ccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238 179 IIDILRRAKANVVVASVAD--------KLEILASCQV-KLVADMLIDE--AAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (344)
Q Consensus 179 ~~~~l~~~~~~v~~~s~~~--------~~~v~~~~g~-~v~~~~~~~~--~~~~~~D~liipGG~~~~~~l~~~~~l~~~ 247 (344)
+...|.++|.++.+++... |..+....|- .+.+...... .....||.|||.-=. .+.+..++.
T Consensus 13 ~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa------~~~~~~l~~ 86 (151)
T PF02558_consen 13 YAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA------YQLEQALQS 86 (151)
T ss_dssp HHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG------GGHHHHHHH
T ss_pred HHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc------cchHHHHHH
Confidence 3455667888888887654 1112222211 1222222211 133789999997521 234567778
Q ss_pred HHHHHhcCCcEEEEcchh
Q 019238 248 LKKQKESNRPYGAICASP 265 (344)
Q Consensus 248 l~~~~~~~k~I~aic~G~ 265 (344)
|+.......+|..+.+|.
T Consensus 87 l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 87 LKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp HCTGEETTEEEEEESSSS
T ss_pred HhhccCCCcEEEEEeCCC
Confidence 888887777899999984
No 309
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=39.33 E-value=46 Score=29.49 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.6
Q ss_pred cCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 219 ~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
++.++|++++.||.+ .++..++.+...+.||.+|-.|.
T Consensus 22 ~~~~~Dlvi~iGGDG---------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDG---------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCH---------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 336789999999954 45667777777789999998886
No 310
>PRK13059 putative lipid kinase; Reviewed
Probab=38.92 E-value=1.9e+02 Score=26.15 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=36.4
Q ss_pred CeEEEEeCCCc----chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 161 PQILVPIANGS----EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 161 ~~v~ill~~g~----~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
+|+.+++-|.. ...++..+.+.|++.|+++.+...+.. . .. ....+. ....+|.|++.||.+..
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~-----~~----~~~~~~-~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLE-Y-----DL----KNAFKD-IDESYKYILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCc-c-----hH----HHHHHH-hhcCCCEEEEECCccHH
Confidence 57777776632 123445677888899988766554432 1 00 111111 12457888888886643
No 311
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=38.84 E-value=77 Score=32.28 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH---hhhcCHHHHHH
Q 019238 171 SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ---AFAKSKKLVNM 247 (344)
Q Consensus 171 ~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~---~l~~~~~l~~~ 247 (344)
-+..++.++++.|+-+.++|+++|-+. . ..+--+++.|+||=.|.-.... ....|+.+.+.
T Consensus 465 kq~ysy~GvlE~LSG~p~dV~FisFdD--i--------------~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~a 528 (719)
T TIGR02336 465 KQTYSYYGILECLSGMPVEVEFISFDD--I--------------LEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVET 528 (719)
T ss_pred hhhhhHHHHHHHhcCCCeeEEEecHHH--H--------------hhcCCCcCCcEEEecCcccccccCccccCCHHHHHH
Confidence 355677778888888888888888654 1 0111235678888877432211 24679999999
Q ss_pred HHHHHhcCCcEEEEcchh
Q 019238 248 LKKQKESNRPYGAICASP 265 (344)
Q Consensus 248 l~~~~~~~k~I~aic~G~ 265 (344)
|+++..+|.-+.+++.-.
T Consensus 529 Lr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 529 VRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred HHHHHHcCCeEEEEECCc
Confidence 999999998888888764
No 312
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=38.74 E-value=73 Score=22.86 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc
Q 019238 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (344)
Q Consensus 173 ~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~ 232 (344)
+..++.+.+.|+..||++.-.... .+. ..+|+++|-|-.
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~-------------------~~~--~~~daiVvtG~~ 45 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENE-------------------QDL--QNVDAIVVTGQD 45 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCc-------------------ccc--CCcCEEEEECCC
Confidence 345677889999999988643311 122 568888887753
No 313
>PRK06934 flavodoxin; Provisional
Probab=38.51 E-value=29 Score=30.21 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.+||.|+|.-- .+.-.-.+.+..||.+..-.||.|+.+|+-
T Consensus 128 ~~YD~I~IG~P---IWwg~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 128 ADYDQIFIGYP---IWWYKMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred HhCCEEEEEcc---hhhccccHHHHHHHHhcCCCCCEEEEEEec
Confidence 78999999432 222235678899999988899999999973
No 314
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=38.19 E-value=44 Score=26.62 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHH--hcCCcEEEEcch
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK--ESNRPYGAICAS 264 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~--~~~k~I~aic~G 264 (344)
..+||.||+.++... . .-.+.+.+||++.. -+++.++.++.|
T Consensus 41 ~~~yD~vi~gspiy~-g--~~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 41 LSDYDAVIFGSPIYA-G--RIPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred cccCCEEEEEEEEEC-C--cCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 378999999776321 1 23566888888654 466777776666
No 315
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=37.91 E-value=2.2e+02 Score=26.55 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=67.1
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHh-cCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
+|+.|+.-++....-...+.+.|.. .+.++.++ +++.+..+.....-.. ..+.+....+.|.|+-.|| +...+
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~~~~--~~~e~~k~~~~v~~~~-~~~~~~~~~r~d~IIaiGG-Gsv~D-- 97 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHILVI--EGGEEYKTFETVTRIL-ERAIALGANRRTAIVAVGG-GATGD-- 97 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceEEEe--CCCCCCCCHHHHHHHH-HHHHHcCCCCCcEEEEECC-cHHHH--
Confidence 6777777666665444456677766 55555443 2221211111000000 0111211255899998887 32322
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCC
Q 019238 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSR 310 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~ 310 (344)
+-.++...+.++.++..+-+- + ++...---|-+++........+...++....++.|-.++.+.
T Consensus 98 ----~ak~vA~~~~rgip~i~VPTT--l-la~~ds~~g~k~~i~~~~~kn~~g~~~~P~~viiDp~~l~tl 161 (344)
T cd08169 98 ----VAGFVASTLFRGIAFIRVPTT--L-LAQSDSGVGGKTGINLKGGKNLLGTFYPPRAVFLDLRFLKTL 161 (344)
T ss_pred ----HHHHHHHHhccCCcEEEecCC--c-ccccccCccceEeEecCCCceeecccCCCCEEEEcHHHHhhC
Confidence 233444455678899988874 2 443322233344433222222223345566677777666443
No 316
>PLN02727 NAD kinase
Probab=37.90 E-value=1.6e+02 Score=31.49 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCCcchhHH-HHHHHHHHhc-CCeEEEEEeCCCceeeecccee-eee--ccccccccCCCccEEEEcCCcc
Q 019238 159 NSPQILVPIANGSEEMEA-VIIIDILRRA-KANVVVASVADKLEILASCQVK-LVA--DMLIDEAAKLSYDLIVLPGGLG 233 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~-~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~-v~~--~~~~~~~~~~~~D~liipGG~~ 233 (344)
++++|+|+.-++-...+. ..+.+.|... |+++.+-..... ......+.. ... ....++. ....|++|+.||.+
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDG 754 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDG 754 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhc-ccCCCEEEEECCcH
Confidence 579999999876533332 2356666665 766643222110 110111110 000 0111222 13689999999954
Q ss_pred chHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 234 ~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++.-.+.+.....||.+|-.|..-+|+
T Consensus 755 ---------TlLrAar~~~~~~iPILGINlGrLGFLT 782 (986)
T PLN02727 755 ---------VILHASNLFRGAVPPVVSFNLGSLGFLT 782 (986)
T ss_pred ---------HHHHHHHHhcCCCCCEEEEeCCCccccc
Confidence 3455666666778899999988644454
No 317
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=37.83 E-value=1e+02 Score=25.32 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCeEEEEeCCCc---chhHHHHHHHHHHhcCC---eEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc-
Q 019238 160 SPQILVPIANGS---EEMEAVIIIDILRRAKA---NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL- 232 (344)
Q Consensus 160 ~~~v~ill~~g~---~~~e~~~~~~~l~~~~~---~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~- 232 (344)
..||+|+...-. .+.-+.+..+.|.+.|. +++++.+.|- .-+.+...... . ..+||++|..|-.
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA------~EiP~~a~~l~-~--~~~yDaiIaLG~VI 80 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGA------FEIPLHAQTLA-K--TGRYAAIVAAALVV 80 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH------HHHHHHHHHHH-h--cCCCCEEEEEEEEE
Confidence 479999997633 44456678888999884 4666666552 11122222222 2 2579999998842
Q ss_pred ---cchHhhhcCHHHHHHHHHHHhcCCcEE
Q 019238 233 ---GGAQAFAKSKKLVNMLKKQKESNRPYG 259 (344)
Q Consensus 233 ---~~~~~l~~~~~l~~~l~~~~~~~k~I~ 259 (344)
.....+-.+.-.....+-..+.+.||+
T Consensus 81 rGeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 81 DGGIYRHEFVAQAVIDGLMRVQLDTEVPVF 110 (158)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 112222333334444454556677765
No 318
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=37.80 E-value=26 Score=29.46 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=40.4
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccc-cC----CCchhhhcccCChHHHHHHHHHhhCCCEEEEE
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-DA----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~-~~----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (344)
.++.|++.|.++.++..+.. +.. .+...+ +. ||...+.+ ......+++. .++++|+.+|
T Consensus 15 l~~~l~~~g~~v~v~~~~~~-~~~-----------~~~~~~~d~iils~GPg~p~~---~~~~~~~~~~-~~~~~PiLGI 78 (187)
T PRK08007 15 LYQYFCELGADVLVKRNDAL-TLA-----------DIDALKPQKIVISPGPCTPDE---AGISLDVIRH-YAGRLPILGV 78 (187)
T ss_pred HHHHHHHCCCcEEEEeCCCC-CHH-----------HHHhcCCCEEEEcCCCCChHH---CCccHHHHHH-hcCCCCEEEE
Confidence 34567778888888776521 110 011111 11 55333332 3345667776 5678999999
Q ss_pred chhHHHHHHHc
Q 019238 81 CVFLAVALGSW 91 (344)
Q Consensus 81 C~g~~~~La~a 91 (344)
|-|-- +|+.+
T Consensus 79 ClG~Q-~la~a 88 (187)
T PRK08007 79 CLGHQ-AMAQA 88 (187)
T ss_pred CHHHH-HHHHH
Confidence 99995 88865
No 319
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.72 E-value=85 Score=28.85 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=53.7
Q ss_pred EEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-------
Q 019238 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA------- 235 (344)
Q Consensus 163 v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~------- 235 (344)
+.|+..|.+.+.-.+.++..+-.+ .+. +.+ .| +.....+++...-..|-|+|.||....
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA--~Vl-ttp-wg----------~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~ 95 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNA--PVL-TTP-WG----------IYNESVLDEIIELNPDLVLIIGGPIAVSPNYENA 95 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCC--eeE-ecC-cc----------cccHHHHHHHHhhCCceEEEECCCCcCChhHHHH
Confidence 788889988777766665554433 332 222 22 122223444444567888888885221
Q ss_pred --------------HhhhcCHHHHHHHHHHHhcCC--cEEEEcchhhhhhh
Q 019238 236 --------------QAFAKSKKLVNMLKKQKESNR--PYGAICASPALVLE 270 (344)
Q Consensus 236 --------------~~l~~~~~l~~~l~~~~~~~k--~I~aic~G~~~lLa 270 (344)
++....+.+..++++.|+++- ..+.+|+| |- ++
T Consensus 96 Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~G-wD-y~ 144 (337)
T COG2247 96 LKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYG-WD-YA 144 (337)
T ss_pred HHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEec-cc-cH
Confidence 112234567888887775432 47889999 65 54
No 320
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=37.65 E-value=51 Score=27.62 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=30.2
Q ss_pred cCCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 219 ~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
.+.++|+++|-|... .+....++.+.++..+-|+|.|+++
T Consensus 72 sPR~ADillVeG~VT-----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVN-----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCC-----ccchHHHHHHHHHcccCCEEEEecc
Confidence 346799999998742 1334567788888899999999975
No 321
>CHL00101 trpG anthranilate synthase component 2
Probab=37.64 E-value=32 Score=28.97 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 66 IVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 66 ~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+.+..++++|+.+||-|.- +|+.+
T Consensus 64 ~i~~~~~~~~PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 64 DVISSYAPYIPILGVCLGHQ-SIGYL 88 (190)
T ss_pred HHHHHhcCCCcEEEEchhHH-HHHHH
Confidence 33345678999999999995 88874
No 322
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=37.62 E-value=85 Score=25.68 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
.+|+.|++.||....++..+...|+..|..+..++.
T Consensus 106 ~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~ 141 (165)
T cd01481 106 VPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGA 141 (165)
T ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC
Confidence 479999999999888899999999999977765554
No 323
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.40 E-value=81 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=32.2
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~ 198 (344)
|||++---||+...-+..+.+.|++.|.++.++++...
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 68888888899999999999999888899999999874
No 324
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=37.08 E-value=52 Score=27.67 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
+.+.|+++|-|... .+....+..+.++..+-|+|.|+++
T Consensus 72 Pr~aDvllV~G~vt-----~~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 72 PRQADLMIVAGTLT-----NKMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCceeEEEEEeCCC-----ccchHHHHHHHHHcCcCCeEEEEec
Confidence 46689999999852 1235556666677778999999875
No 325
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=37.08 E-value=1.8e+02 Score=22.51 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHH---h
Q 019238 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK---E 253 (344)
Q Consensus 177 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~---~ 253 (344)
-.+.+.+...|.++++.....- ...+. .++|.|++........... .+.+..|+++.. -
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~---------------~~~~l--~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~ 78 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADA---------------DAEDL--LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDL 78 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccC---------------CHHHH--hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCC
Confidence 3455667777777776665431 12233 5689998876431111111 134455555443 3
Q ss_pred cCCcEEEEcchh
Q 019238 254 SNRPYGAICASP 265 (344)
Q Consensus 254 ~~k~I~aic~G~ 265 (344)
+++.++.+++|.
T Consensus 79 ~gk~~~vfgt~g 90 (140)
T TIGR01753 79 GGKKVALFGSGD 90 (140)
T ss_pred CCCEEEEEecCC
Confidence 688888888764
No 326
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=36.57 E-value=42 Score=31.31 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
-+..++.++++..+.+|+.+||-|=- +||-|
T Consensus 236 ~~~~i~~ik~l~~~~iPifGICLGHQ-llalA 266 (368)
T COG0505 236 LDYAIETIKELLGTKIPIFGICLGHQ-LLALA 266 (368)
T ss_pred HHHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence 47788999999999999999999995 88854
No 327
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.71 E-value=2e+02 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCCeEEEEeCC--Cc-chhHH-H-HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc
Q 019238 159 NSPQILVPIAN--GS-EEMEA-V-IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (344)
Q Consensus 159 ~~~~v~ill~~--g~-~~~e~-~-~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~ 233 (344)
+++|+.|++-| |- ..... . .+...|+.++++++++-.+.. .+...+ ..+.....||.|++.||.+
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-----ghA~~l-----a~~~~~~~~D~VV~vGGDG 179 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-----LHAKEV-----VRTMDLSKYDGIVCVSGDG 179 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-----cHHHHH-----HHHhhhcCCCEEEEEcCCC
Confidence 56888888877 22 22232 2 355689999988776544431 000111 1111225699999999976
Q ss_pred ch
Q 019238 234 GA 235 (344)
Q Consensus 234 ~~ 235 (344)
..
T Consensus 180 Tl 181 (481)
T PLN02958 180 IL 181 (481)
T ss_pred HH
Confidence 43
No 328
>PLN02929 NADH kinase
Probab=35.30 E-value=1.8e+02 Score=26.64 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHHHHHHH
Q 019238 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK 252 (344)
Q Consensus 173 ~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~ 252 (344)
..-+..+.+.|+..|+++..+.... + -.. ..+.|++++.||.+. ++...+.+
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r~~-----------~-----~~~--~~~~Dlvi~lGGDGT---------~L~aa~~~- 84 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLRNE-----------L-----SQP--IRDVDLVVAVGGDGT---------LLQASHFL- 84 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeccc-----------c-----ccc--cCCCCEEEEECCcHH---------HHHHHHHc-
Confidence 3445567888999998875443211 0 011 146799999999543 34444555
Q ss_pred hcCCcEEEEcchh
Q 019238 253 ESNRPYGAICASP 265 (344)
Q Consensus 253 ~~~k~I~aic~G~ 265 (344)
....||.+|-.|+
T Consensus 85 ~~~iPvlGIN~Gp 97 (301)
T PLN02929 85 DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCcEEEEECCC
Confidence 6789999999883
No 329
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=35.29 E-value=77 Score=25.35 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=50.2
Q ss_pred CeEEEEeCCCc---chhHHHHHHHHHHhcCCe---EEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCc--
Q 019238 161 PQILVPIANGS---EEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL-- 232 (344)
Q Consensus 161 ~~v~ill~~g~---~~~e~~~~~~~l~~~~~~---v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~-- 232 (344)
.||+|+...-. .+.-+....+.|.+.|.. ++++.+.|- .-+.+.... +.. ..+||+++..|-.
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa------~EiP~a~~~-l~~--~~~~DavI~LG~VIr 71 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGA------FELPLAVKK-LAE--TGKYDAVIALGCVIR 71 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH------HHHHHHHHH-HHh--cCCCCEEEEEeeEEe
Confidence 47888876633 334456778888888865 455555442 112222222 222 2579999998842
Q ss_pred --cchHhhhcCHHHHHHHHHHHhcCCcEE
Q 019238 233 --GGAQAFAKSKKLVNMLKKQKESNRPYG 259 (344)
Q Consensus 233 --~~~~~l~~~~~l~~~l~~~~~~~k~I~ 259 (344)
.....+..+.-...+.+-..+.++||+
T Consensus 72 G~T~H~e~v~~~v~~gl~~~sl~~~~PV~ 100 (138)
T TIGR00114 72 GGTPHFEYVADEAAKGIADLALDYDKPVI 100 (138)
T ss_pred CCCchhHHHHHHHHHHHHHHHhhhCCCEE
Confidence 222233344444555555567788865
No 330
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.15 E-value=99 Score=28.37 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCCeEEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccce-eeeeccccccccC----CCccEEEEcCCc
Q 019238 159 NSPQILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV-KLVADMLIDEAAK----LSYDLIVLPGGL 232 (344)
Q Consensus 159 ~~~~v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~-~v~~~~~~~~~~~----~~~D~liipGG~ 232 (344)
.+++|||+..+ |.-..|+...++. +.-.+++.++... |++..-. .|. ..+..++. .+||+|||.=|-
T Consensus 13 ~p~~I~vITs~~gAa~~D~~~~~~~-r~~~~~~~~~p~~----vQG~~A~~~I~--~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAIQDFLRTLKR-RNPIVEIILYPAS----VQGEGAAASIV--SALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCCEEEEEeCCchHHHHHHHHHHHH-hCCCcEEEEEecc----ccccchHHHHH--HHHHHHHhccccccccEEEEecCC
Confidence 46899999987 4444554443333 2222455544332 2211100 010 11222211 369999998332
Q ss_pred cchHhh--hcCHHHHHHHHHHHhcCCc-EEEEcchhhhhhhhcCCCCCCeeeeCcCchh
Q 019238 233 GGAQAF--AKSKKLVNMLKKQKESNRP-YGAICASPALVLEPHGLLKGKKATAFPAMCN 288 (344)
Q Consensus 233 ~~~~~l--~~~~~l~~~l~~~~~~~k~-I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~ 288 (344)
++..++ ++++.+...|- +...| |.||+|=.-+.|+ -+..++++.|+....+
T Consensus 86 Gs~eDL~~FN~e~varai~---~~~~PvisaIGHe~D~ti~--D~vAd~ra~TPtaaAe 139 (319)
T PF02601_consen 86 GSIEDLWAFNDEEVARAIA---ASPIPVISAIGHETDFTIA--DFVADLRAPTPTAAAE 139 (319)
T ss_pred CChHHhcccChHHHHHHHH---hCCCCEEEecCCCCCchHH--HHHHHhhCCCHHHHHH
Confidence 444554 46666665444 43455 6677776543222 2344556666544433
No 331
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=34.55 E-value=1.1e+02 Score=31.15 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch---HhhhcCHHHHHHHH
Q 019238 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA---QAFAKSKKLVNMLK 249 (344)
Q Consensus 173 ~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~---~~l~~~~~l~~~l~ 249 (344)
..++.++.+.|+-+.++|+++|-+. . ..+--+++.|+||=.|--... -....|+.++.-||
T Consensus 464 ~ysy~GilEaLSGlp~dV~FISFdD--i--------------~~~gi~~didViINaGdA~TA~SGG~~W~d~~iv~~lr 527 (716)
T PF09508_consen 464 IYSYIGILEALSGLPFDVEFISFDD--I--------------RENGILEDIDVIINAGDAGTAWSGGENWKDPKIVTALR 527 (716)
T ss_dssp THHHHHHHHHHHTSSSEEEEEEHHH--H--------------HHH-S-TT--EEEEEESTTSTTT-GGGGG-HHHHHHHH
T ss_pred hhhHHHHHHHhcCCCceeEEecHHH--H--------------hhcCCcccCCEEEecCcccccccCccccCCHHHHHHHH
Confidence 3788999999999999999999764 1 111123678999988742222 13468999999999
Q ss_pred HHHhcCCcEEEEcchh
Q 019238 250 KQKESNRPYGAICASP 265 (344)
Q Consensus 250 ~~~~~~k~I~aic~G~ 265 (344)
++..+|.-..+++.-+
T Consensus 528 ~fV~~GGGfIGVGEPs 543 (716)
T PF09508_consen 528 EFVYNGGGFIGVGEPS 543 (716)
T ss_dssp HHHHTT-EEEEEESTE
T ss_pred HHHHcCCCEEEcCCCc
Confidence 9999988888887654
No 332
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=34.31 E-value=1.4e+02 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~ 198 (344)
++|||++---||+...-+..+.+.|+..| +|.++++...
T Consensus 4 ~~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 4 KKPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 45788887788999999999999999887 8999988764
No 333
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=34.10 E-value=1.2e+02 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=23.6
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
+.+.|++++.+ .|+..=+.++.+.+...|+++.+....
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~ 100 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSD 100 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45789988854 222222335666677789998776543
No 334
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=33.80 E-value=1.3e+02 Score=23.25 Aligned_cols=85 Identities=28% Similarity=0.273 Sum_probs=45.0
Q ss_pred eEEEEeCCCc--chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCc-cEEEEcCCccchHhh
Q 019238 162 QILVPIANGS--EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY-DLIVLPGGLGGAQAF 238 (344)
Q Consensus 162 ~v~ill~~g~--~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~-D~liipGG~~~~~~l 238 (344)
|+.|++-|.. ...++..+...|+..+.++++...+...... .+ . ..... .++ |.|++.||.+.
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~-----~~--~-~~~~~--~~~~~~ivv~GGDGT---- 66 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAE-----AL--A-RILAL--DDYPDVIVVVGGDGT---- 66 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHH-----HH--H-HHHHH--TTS-SEEEEEESHHH----
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHH-----HH--H-HHHhh--ccCccEEEEEcCccH----
Confidence 3555665522 2222456778888888777665554320100 00 0 01222 455 99999999653
Q ss_pred hcCHHHHHHHHHHHhcCC----cEEEEcchh
Q 019238 239 AKSKKLVNMLKKQKESNR----PYGAICASP 265 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k----~I~aic~G~ 265 (344)
+.+.+........ +++-+-.|+
T Consensus 67 -----l~~vv~~l~~~~~~~~~~l~iiP~GT 92 (130)
T PF00781_consen 67 -----LNEVVNGLMGSDREDKPPLGIIPAGT 92 (130)
T ss_dssp -----HHHHHHHHCTSTSSS--EEEEEE-SS
T ss_pred -----HHHHHHHHhhcCCCccceEEEecCCC
Confidence 3445555565555 666555554
No 335
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.77 E-value=2.2e+02 Score=21.78 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=41.1
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
|+|+|+-...-...--..++..|.+.|+++..++++.+ .+ .|....+ ++.+ .+...|.++|.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~-~i---~G~~~y~--sl~e-~p~~iDlavv~~~--------- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG-EI---LGIKCYP--SLAE-IPEPIDLAVVCVP--------- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS-EE---TTEE-BS--SGGG-CSST-SEEEE-S----------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce-EE---CcEEeec--cccC-CCCCCCEEEEEcC---------
Confidence 35555553322111223466777778999998888775 33 4544443 3555 3678898888643
Q ss_pred CHHHHHHHHHHHhcC
Q 019238 241 SKKLVNMLKKQKESN 255 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~ 255 (344)
.+.+.+++++..+.|
T Consensus 65 ~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 65 PDKVPEIVDEAAALG 79 (116)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 123455666666555
No 336
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=33.70 E-value=1.2e+02 Score=27.36 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhCC--CEEEEEchhHHHHHHH
Q 019238 62 VLESIVKKQASDG--RLYAAICVFLAVALGS 90 (344)
Q Consensus 62 ~~~~~l~~~~~~g--~~i~aiC~g~~~~La~ 90 (344)
.+.++..+..++| .|+-++|-|.- +|+.
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHH-HHHH
Confidence 3334444444445 79999999994 7775
No 337
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.44 E-value=1.5e+02 Score=27.29 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=52.4
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
...+|++++.+ .|+..-+.++.+.++..|+++.++..... + . .....+.......+|.+++.+...
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~-~-~-------~~~~~i~~l~~~~vDGiIi~~~~~-- 92 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-E-E-------TQMSQIENMINRGVDVLVIIPYNG-- 92 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC-H-H-------HHHHHHHHHHHcCCCEEEEeCCCh--
Confidence 35889999864 56666777888889999999988765432 1 0 001122333335789998865311
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEc
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAIC 262 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic 262 (344)
....++++...+++.+|..+.
T Consensus 93 ------~~~~~~l~~~~~~~iPvV~id 113 (330)
T PRK10355 93 ------QVLSNVIKEAKQEGIKVLAYD 113 (330)
T ss_pred ------hhHHHHHHHHHHCCCeEEEEC
Confidence 112244555556666766664
No 338
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=33.42 E-value=3e+02 Score=24.83 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
..+|++++.||.+ -++...+.+.+.+.+|.++-.|.
T Consensus 54 ~~~d~ivvlGGDG---------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDG---------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcH---------HHHHHHHHhccCCCCEEEEeCCC
Confidence 6789999999843 45667788888889999999995
No 339
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=33.41 E-value=56 Score=28.73 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.2
Q ss_pred cCChHHHHHHHHHhhCCCEEEEEchhHHHHHH
Q 019238 58 KESEVLESIVKKQASDGRLYAAICVFLAVALG 89 (344)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La 89 (344)
.+|.--+..|++..++|+||.+||=|.- +|.
T Consensus 91 ~RD~~E~aLi~~ALe~~iPILgICRG~Q-llN 121 (243)
T COG2071 91 ERDAFELALIRAALERGIPILGICRGLQ-LLN 121 (243)
T ss_pred cccHHHHHHHHHHHHcCCCEEEEccchH-HHH
Confidence 3466678999999999999999999995 554
No 340
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=33.40 E-value=65 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
+.+.|+++|-|.... +....+.-+.++..+-|.|.|+++
T Consensus 55 Pr~aDvllVtG~vt~-----~~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 55 PRQADVMIVAGTVTK-----KMAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCcceEEEEecCCcH-----HHHHHHHHHHHhccCCceEEEecc
Confidence 356899999997431 123334444445556899998875
No 341
>PRK03673 hypothetical protein; Provisional
Probab=33.18 E-value=2.1e+02 Score=27.44 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH--------------h
Q 019238 172 EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--------------A 237 (344)
Q Consensus 172 ~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~--------------~ 237 (344)
.+.....+...|...|+++...+.-+..+- .+. ..+... ..++|+||+.||.+... .
T Consensus 19 ~dtN~~~la~~L~~~G~~v~~~~~v~D~~~------~i~--~~l~~a-~~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~ 89 (396)
T PRK03673 19 VDTNAAWLADFFFHQGLPLSRRNTVGDNLD------ALV--AILRER-SQHADVLIVNGGLGPTSDDLSALAAATAAGEG 89 (396)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEcCCCHH------HHH--HHHHHH-hccCCEEEEcCCCCCCCcccHHHHHHHHcCCC
Confidence 355666777889999988765544332010 000 012222 25789999999964321 1
Q ss_pred hhcCHHHHHHHHHHHhc
Q 019238 238 FAKSKKLVNMLKKQKES 254 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~ 254 (344)
+..|+..+++|++++++
T Consensus 90 L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 90 LVLHEEWLAEMERFFAE 106 (396)
T ss_pred ceeCHHHHHHHHHHHHh
Confidence 35578899999988854
No 342
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.76 E-value=1.2e+02 Score=26.49 Aligned_cols=85 Identities=20% Similarity=0.073 Sum_probs=44.5
Q ss_pred eEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC-CCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA-DKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 162 ~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~-~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
||++++.+ .|+..-...+.+.+++.|+++.+.... .+.+- . ....++.....+.|.+|+.+.. .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----~----~~~~i~~l~~~~vdgvii~~~~--~-- 68 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVA----G----QVNLLENAIARGPDAILLAPTD--A-- 68 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHH----H----HHHHHHHHHHhCCCEEEEcCCC--h--
Confidence 67888754 234444456677788889998877532 11010 0 0111222223568988886531 1
Q ss_pred hhcCHHHHHHHHHHHhcCCcEEEEc
Q 019238 238 FAKSKKLVNMLKKQKESNRPYGAIC 262 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~~k~I~aic 262 (344)
....+.++.....+.++..+.
T Consensus 69 ----~~~~~~l~~~~~~~ipvV~~~ 89 (273)
T cd06310 69 ----KALVPPLKEAKDAGIPVVLID 89 (273)
T ss_pred ----hhhHHHHHHHHHCCCCEEEec
Confidence 112234455455566666664
No 343
>PRK05637 anthranilate synthase component II; Provisional
Probab=32.70 E-value=41 Score=28.89 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=39.2
Q ss_pred hHHHHHhCCCeEEEEEecCC-cceecC--CCCEEEcCccccccccCCCchhhhcccCChHHHHHHHHHhhCCCEEEEEch
Q 019238 6 TIDVLRRSGADVVVASVEKQ-LRVDAC--HGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICV 82 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~-~~v~~~--~g~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (344)
.++.|++.|+++.++..+.. +.+... .|+-+. ||.....+ .....+++++.. .+++|.+||-
T Consensus 17 l~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIls-----------gGPg~~~d---~~~~~~li~~~~-~~~PiLGICl 81 (208)
T PRK05637 17 LVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLS-----------PGPGHPRD---AGNMMALIDRTL-GQIPLLGICL 81 (208)
T ss_pred HHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEe-----------CCCCCHHH---hhHHHHHHHHHh-CCCCEEEEcH
Confidence 34567888888888876520 011000 011110 55333322 223456665543 5799999999
Q ss_pred hHHHHHHHc
Q 019238 83 FLAVALGSW 91 (344)
Q Consensus 83 g~~~~La~a 91 (344)
|.- +|+.+
T Consensus 82 G~Q-lla~a 89 (208)
T PRK05637 82 GFQ-ALLEH 89 (208)
T ss_pred HHH-HHHHH
Confidence 995 89886
No 344
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=32.56 E-value=33 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHH
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALG 89 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La 89 (344)
.....-|+...++|+++.+||.|.- +|.
T Consensus 74 ~~k~~~l~~~i~~g~p~laiCgg~Q-lLG 101 (250)
T COG3442 74 LTKKEGLKDAIENGKPVLAICGGYQ-LLG 101 (250)
T ss_pred ccccHHHHHHHhcCCcEEEEccchh-hcc
Confidence 4556788999999999999999995 554
No 345
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=32.55 E-value=2.6e+02 Score=26.33 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=56.9
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCe-EEEEEeCCCceeee-ccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~-v~~~s~~~~~~v~~-~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
.+|+++..+.....|...+.+.++..|.. ++.-.......... ..|.. ....+++++ ++.|++++.|.. +.
T Consensus 88 ~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~-~~~~sl~di--e~ad~illiG~n--~~-- 160 (366)
T cd02774 88 SKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENY-LFNNSLKNL--DKSDLCLLIGSN--LR-- 160 (366)
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCC-ccCCCHHHH--hhCCEEEEEcCC--cc--
Confidence 57889999988888888887777765532 11100000000000 00111 123467777 789999999963 22
Q ss_pred hcCHHHHHHHHHHHhc-CCcEEEEcc
Q 019238 239 AKSKKLVNMLKKQKES-NRPYGAICA 263 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~-~k~I~aic~ 263 (344)
...|-+-..|++...+ +..|..+..
T Consensus 161 ~e~Pvl~~rlrka~~~~~~ki~vi~~ 186 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIGN 186 (366)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3567777888887754 567777764
No 346
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.35 E-value=3.4e+02 Score=24.10 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=45.7
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
|+++|.--|. .......+.+.|.+.|+.+... .+. . ... .+.|++++.||.+.
T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~--~---------------~~~--~~~d~vi~iGGDGT------ 53 (256)
T PRK14075 1 MKLGIFYREE-KEKEAKFLKEKISKEHEVVEFC-EAS--A---------------SGK--VTADLIIVVGGDGT------ 53 (256)
T ss_pred CEEEEEeCcc-HHHHHHHHHHHHHHcCCeeEee-ccc--c---------------ccc--CCCCEEEEECCcHH------
Confidence 5677774444 4455667777888877654422 111 0 111 46799999999653
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
++..++.+ ++||.+|-.|..-+|+
T Consensus 54 ---~L~a~~~~---~~Pilgin~G~lGfl~ 77 (256)
T PRK14075 54 ---VLKAAKKV---GTPLVGFKAGRLGFLS 77 (256)
T ss_pred ---HHHHHHHc---CCCEEEEeCCCCcccc
Confidence 23334443 7899999888633343
No 347
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=32.34 E-value=41 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+...++++++.+ ++|+.+||-|.- +|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence 4667888888887 899999999995 88754
No 348
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=32.19 E-value=71 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
+.++|+++|-|... .+....+..+.++..+-|+|.|+++
T Consensus 71 PR~aDillVeG~VT-----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 71 PRQADMLMVMGTIA-----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CccceEEEEEecCC-----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 46789999998742 2335667777777889999999865
No 349
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.83 E-value=1.2e+02 Score=26.94 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=48.1
Q ss_pred EEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 163 ILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 163 v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
|++++.+ .|+..-+..+.+.++..|+++.+.....+ +- .....+.......+|.+++.+...
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~--------~~~~~i~~~~~~~vdgiii~~~~~------ 66 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGD-PA--------KQISQIENMIAKGVDVLVIAPVDG------ 66 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HH--------HHHHHHHHHHHcCCCEEEEecCCh------
Confidence 6777754 45555556777888888999887655432 10 001122333335789999865321
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEc
Q 019238 240 KSKKLVNMLKKQKESNRPYGAIC 262 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~~k~I~aic 262 (344)
....+++++..+++.+|..+.
T Consensus 67 --~~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 67 --EALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred --hhHHHHHHHHHHCCCCEEEEC
Confidence 112345566666778877764
No 350
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.81 E-value=2.8e+02 Score=24.82 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=41.0
Q ss_pred CeEEEEeCCCcchhHHHH-HHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 161 PQILVPIANGSEEMEAVI-IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~-~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.+|+|+.-+.-...++.. +.+.|++.|+++..- . .+.|.+++.||.+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------------~--~~~D~vi~lGGDG------ 50 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------------P--KNANIIVSIGGDG------ 50 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------------C--CCccEEEEECCcH------
Confidence 477777665444444433 334466677655310 1 3468999999954
Q ss_pred cCHHHHHHHHHHHhc-CCcEEEEcc-hh
Q 019238 240 KSKKLVNMLKKQKES-NRPYGAICA-SP 265 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~-~k~I~aic~-G~ 265 (344)
.++..++.+... ..+|.+|-. |.
T Consensus 51 ---T~L~a~~~~~~~~~~pilgIn~~G~ 75 (264)
T PRK03501 51 ---TFLQAVRKTGFREDCLYAGISTKDQ 75 (264)
T ss_pred ---HHHHHHHHhcccCCCeEEeEecCCC
Confidence 334555555443 567888877 64
No 351
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.34 E-value=82 Score=23.81 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred EEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcC
Q 019238 163 ILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (344)
Q Consensus 163 v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipG 230 (344)
+.+...+ ......+..+...|++.|+++.++..... . +.-.+.+...++|+|.+-.
T Consensus 3 v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~-~-----------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 3 VVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP-P-----------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp EEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB--H-----------HHHHHHHHHTTCSEEEEEE
T ss_pred EEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC-H-----------HHHHHHHhcCCCcEEEEEc
Confidence 3444444 45678899999999999999998865431 1 2222333335788888854
No 352
>PRK09267 flavodoxin FldA; Validated
Probab=31.27 E-value=1.4e+02 Score=24.26 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=23.3
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHH---HhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ---KESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~---~~~~k~I~aic~G 264 (344)
.+||.|++......... ..+...+|+... .-++|+++.+++|
T Consensus 45 ~~~d~vi~g~pt~~~G~--~~~~~~~fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 45 EAYDLLILGIPTWGYGE--LQCDWDDFLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred hhCCEEEEEecCcCCCC--CCHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence 67999888754211111 123444555543 2357888877765
No 353
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=31.22 E-value=66 Score=28.24 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHH
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALG 89 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La 89 (344)
.+....++++..+.++|+.+||.|.- +|+
T Consensus 70 ~~~~~~~i~~~~~~~~PvlGIClG~Q-~l~ 98 (235)
T cd01746 70 VEGKILAIKYARENNIPFLGICLGMQ-LAV 98 (235)
T ss_pred hhhHHHHHHHHHHCCceEEEEEhHHH-HHH
Confidence 45667889999999999999999994 554
No 354
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=31.14 E-value=40 Score=31.92 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCCc-----chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCcc
Q 019238 159 NSPQILVPIANGS-----EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (344)
Q Consensus 159 ~~~~v~ill~~g~-----~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~ 233 (344)
+++||.|++-|-. ...=.-...-+|.-+|++|+++-.+..... ....+.++ ...|+|+|.||.+
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqa----------k~l~e~~~-t~~Dii~VaGGDG 127 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQA----------KALAEAVD-TQEDIIYVAGGDG 127 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHH----------HHHHHHhc-cCCCeEEEecCCC
Confidence 4689999987722 111113445567778888888866542111 11112221 2238888888765
Q ss_pred c
Q 019238 234 G 234 (344)
Q Consensus 234 ~ 234 (344)
.
T Consensus 128 T 128 (535)
T KOG4435|consen 128 T 128 (535)
T ss_pred c
Confidence 3
No 355
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.90 E-value=91 Score=20.67 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.0
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEE
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVV 192 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~ 192 (344)
++++.||+..++..+.+.+++.|..+.+
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~ 30 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPL 30 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcce
Confidence 4788999999999999999999875543
No 356
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=30.73 E-value=76 Score=29.92 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=63.1
Q ss_pred cCCCCEEEcCccccccccC--CCchhhhcc-cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCC---------C
Q 019238 30 ACHGVKIVADALVSNCRDA--CGMPGATNL-KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG---------L 97 (344)
Q Consensus 30 ~~~g~~~~~d~~~~~~~~~--gG~~~~~~~-~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g---------~ 97 (344)
...|+.+..+..++..... ||....... .+.+++...++...+++.++.-++.|+. +|..-+-++| .
T Consensus 9 ~~~~~~~~~~~~L~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSN-lLv~D~g~~GvVI~l~~~~i 87 (363)
T PRK13903 9 AFAGAEVAEDVPLAPLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSN-LVIADDGFDGTVVRVATRGV 87 (363)
T ss_pred cccCcEeeCCCCcccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCee-EeECCCCccEEEEEeCCCcE
Confidence 3456777777777666655 774332222 3457788888888888999999999998 6654431111 1
Q ss_pred C-C--CCEEcCCCCCcHHHHHHHHHHH
Q 019238 98 K-D--GKVVTTRGPGTPMEFVVALVEQ 121 (344)
Q Consensus 98 ~-d--g~~iT~~g~~~~~~~~~~lv~~ 121 (344)
+ + ++.+++++...+.++.....++
T Consensus 88 ~i~~~~~~v~vgAG~~~~~l~~~a~~~ 114 (363)
T PRK13903 88 TVDCGGGLVRAEAGAVWDDVVARTVEA 114 (363)
T ss_pred EEeCCCCEEEEEcCCCHHHHHHHHHHc
Confidence 1 4 7889999888888988888775
No 357
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=30.27 E-value=79 Score=27.62 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
++.|+++|-|... .++...++.+++..++.|.|.|+++
T Consensus 49 ~~~dil~VeG~i~-----~~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVC-----LQDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCC-----CCccHHHHHHHHHhccCCEEEEeec
Confidence 4689999988752 1344578899999999999999965
No 358
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=30.15 E-value=3.2e+02 Score=25.83 Aligned_cols=141 Identities=15% Similarity=0.059 Sum_probs=67.5
Q ss_pred CCeEEEEeCCCcchh--H-HHHHHHHHHhcCCeEE----EEEeCCCceeeec-cceeeeeccccccccCCCccEEEEcCC
Q 019238 160 SPQILVPIANGSEEM--E-AVIIIDILRRAKANVV----VASVADKLEILAS-CQVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 160 ~~~v~ill~~g~~~~--e-~~~~~~~l~~~~~~v~----~~s~~~~~~v~~~-~g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
.+|+.|+.-++.... . ...+.+.|+..|.++. .+....|....+. .... ..-..+.+....+.|.|+-.||
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~-~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVE-ALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHH-HHHHHHHHcCCCcCcEEEEECC
Confidence 367777776666542 1 2344566776774332 2222222111110 0000 0001122223355568888887
Q ss_pred ccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeCCC
Q 019238 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTSRG 311 (344)
Q Consensus 232 ~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~~g 311 (344)
+...+ +-.++...+.+|.+...+.|= + +++.----|-+.+..-.....+...++....++.|-.++.+-.
T Consensus 109 -G~v~D------~ag~vA~~~~rGip~I~IPTT--l-la~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP 178 (369)
T cd08198 109 -GAVLD------AVGYAAATAHRGVRLIRIPTT--V-LAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLP 178 (369)
T ss_pred -hHHHH------HHHHHHHHhcCCCCEEEECCC--c-hhhhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCC
Confidence 32322 234455456778999999874 3 6664322233333222112223334566777777877665443
No 359
>PRK08105 flavodoxin; Provisional
Probab=29.88 E-value=2.6e+02 Score=22.44 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=20.2
Q ss_pred CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
.||.|+-.. |....=.-.+.+.+.+.|+++.++..
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 466666544 33433333556777777888766543
No 360
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=29.79 E-value=3.3e+02 Score=25.07 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.5
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~ 267 (344)
.+.|+|++.|..+ .. .......+|++...++++.++-=|+|..+
T Consensus 128 ~~~d~VvlsGSlP--~g-~~~d~y~~li~~~~~~g~~vilD~Sg~~L 171 (310)
T COG1105 128 ESDDIVVLSGSLP--PG-VPPDAYAELIRILRQQGAKVILDTSGEAL 171 (310)
T ss_pred ccCCEEEEeCCCC--CC-CCHHHHHHHHHHHHhcCCeEEEECChHHH
Confidence 6679998888642 22 24556788999999999999999999754
No 361
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.72 E-value=1.4e+02 Score=24.00 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
.+|+.|++.||....++....+.++..|+++..++..
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 4788999999998777777888899999988877764
No 362
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.61 E-value=3.5e+02 Score=24.67 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCeEEEEeCC----CcchhHHHHHHHHHHhcCCeEEEEEeCC
Q 019238 160 SPQILVPIAN----GSEEMEAVIIIDILRRAKANVVVASVAD 197 (344)
Q Consensus 160 ~~~v~ill~~----g~~~~e~~~~~~~l~~~~~~v~~~s~~~ 197 (344)
++++.++.-+ +-.........+.|+.+|++++..-.+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~ 43 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEE 43 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeec
Confidence 3555555544 2345566677888888888776655443
No 363
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.49 E-value=51 Score=29.96 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=57.5
Q ss_pred EcCccccccccC--CCchhhhcccCC-hHHHHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC-------------CC
Q 019238 37 VADALVSNCRDA--CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------DG 100 (344)
Q Consensus 37 ~~d~~~~~~~~~--gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------dg 100 (344)
.++.+++....+ ||.........+ +++.+.++.....+.++.-+..|+. +|-.-+-.++-- ++
T Consensus 4 ~~~~~L~~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSN-lLv~d~g~~gvvi~~~~~~~~~~~~~~ 82 (291)
T COG0812 4 KTNVPLKRYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSN-LLVRDGGIGGVVIKLGKLNFIEIEGDD 82 (291)
T ss_pred ccCCccccceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCce-EEEecCCCceEEEEcccccceeeeccC
Confidence 344444444443 663333333444 8899999999989999999999998 665555222211 33
Q ss_pred CEEcCCCCCcHHHHHHHHHHH
Q 019238 101 KVVTTRGPGTPMEFVVALVEQ 121 (344)
Q Consensus 101 ~~iT~~g~~~~~~~~~~lv~~ 121 (344)
..|++.+...+.++....+++
T Consensus 83 ~~i~a~aG~~~~~l~~~~~~~ 103 (291)
T COG0812 83 GLIEAGAGAPWHDLVRFALEN 103 (291)
T ss_pred CeEEEccCCcHHHHHHHHHHc
Confidence 499999999999998888776
No 364
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.29 E-value=2.1e+02 Score=21.97 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=42.3
Q ss_pred CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (344)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~ 247 (344)
.......-...+...|+..||++......- .++...+.+...+.|+|.+.+-.. .....-+.+++.
T Consensus 8 ~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v------------p~e~~~~~a~~~~~d~V~iS~~~~--~~~~~~~~~~~~ 73 (122)
T cd02071 8 GLDGHDRGAKVIARALRDAGFEVIYTGLRQ------------TPEEIVEAAIQEDVDVIGLSSLSG--GHMTLFPEVIEL 73 (122)
T ss_pred CCChhHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcccch--hhHHHHHHHHHH
Confidence 335566777788889999999998765542 222233444446789999977532 222223445555
Q ss_pred HHHH
Q 019238 248 LKKQ 251 (344)
Q Consensus 248 l~~~ 251 (344)
|++.
T Consensus 74 L~~~ 77 (122)
T cd02071 74 LREL 77 (122)
T ss_pred HHhc
Confidence 5554
No 365
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=29.23 E-value=3.7e+02 Score=24.48 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeee------------ccccccccCCCccEE
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVA------------DMLIDEAAKLSYDLI 226 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~------------~~~~~~~~~~~~D~l 226 (344)
.+|||+|+ --|..-.- +...|.++|.++.+++.+.. ......|+.+.. ....+. ...+|.|
T Consensus 4 ~~m~I~Ii-G~GaiG~~---lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~v 76 (313)
T PRK06249 4 ETPRIGII-GTGAIGGF---YGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED--MPPCDWV 76 (313)
T ss_pred cCcEEEEE-CCCHHHHH---HHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh--cCCCCEE
Confidence 35788877 44444433 33456778899988887542 211122333221 111112 2578999
Q ss_pred EEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 227 VLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 227 iipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
||.-=. .+...+++.++.....+..|..+.+|
T Consensus 77 ilavK~------~~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 77 LVGLKT------TANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred EEEecC------CChHhHHHHHhhhcCCCCEEEEecCC
Confidence 887421 12234555666555555566666666
No 366
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=29.00 E-value=2.8e+02 Score=22.94 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHH
Q 019238 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (344)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l 244 (344)
|++.|+++........-..-+.|+.+.+.-.+. + +.+++...+++-|+|.-|.+.+. +..--
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDe-----------i----TV~El~~~NP~~LliSPGPG~P~---DsGIs 82 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDE-----------L----TVEELKRKNPRGLLISPGPGTPQ---DSGIS 82 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCc-----------c----cHHHHhhcCCCeEEecCCCCCCc---cccch
Confidence 345566655554433333356677776655443 1 23344334566666654433332 34445
Q ss_pred HHHHHHHHhcCCcEEEEcchhhhhhh-------hc--CCCCCCeeeeCcCc
Q 019238 245 VNMLKKQKESNRPYGAICASPALVLE-------PH--GLLKGKKATAFPAM 286 (344)
Q Consensus 245 ~~~l~~~~~~~k~I~aic~G~~~lLa-------~a--GlL~g~~~T~~~~~ 286 (344)
++-++++. ...|+.++|-|-..+.. .+ ++..|+.--.|.+.
T Consensus 83 ~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 83 LQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred HHHHHHhC-CCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 56666654 35789999999655322 22 36777665555443
No 367
>PRK09004 FMN-binding protein MioC; Provisional
Probab=28.99 E-value=2.6e+02 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=19.8
Q ss_pred CeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEE
Q 019238 161 PQILVPIAN--GSEEMEAVIIIDILRRAKANVVVA 193 (344)
Q Consensus 161 ~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~ 193 (344)
++|.|+-.. |....=...+.+.+.+.|++++++
T Consensus 2 ~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~ 36 (146)
T PRK09004 2 ADITLISGSTLGGAEYVADHLAEKLEEAGFSTETL 36 (146)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEe
Confidence 466666544 444444445667777778877654
No 368
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=28.78 E-value=2.3e+02 Score=23.04 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=55.9
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeE---EEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC-
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANV---VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG- 231 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v---~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG- 231 (344)
.+.||+|+... ...+.-+....+.|.+.|... +++...|- .-+.+... .+... .+||+++-.|-
T Consensus 11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa------~EiPl~a~-~La~~--~~yDAvv~lG~V 81 (152)
T COG0054 11 KGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGA------FEIPLAAK-KLART--GKYDAVVALGAV 81 (152)
T ss_pred CCceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCc------chhHHHHH-HHHhc--CCcceEEEEeeE
Confidence 45799999865 334455667888898888554 35555442 11121112 23333 67999998873
Q ss_pred ---ccchHhhhcCHHHHHHHHHHHhcCCcEEE
Q 019238 232 ---LGGAQAFAKSKKLVNMLKKQKESNRPYGA 260 (344)
Q Consensus 232 ---~~~~~~l~~~~~l~~~l~~~~~~~k~I~a 260 (344)
-.....+-.++......+-..+.++||..
T Consensus 82 IrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~ 113 (152)
T COG0054 82 IRGETYHFDYVANEVARGLMDVSLETGVPVTF 113 (152)
T ss_pred EeCCCccHHHHHHHHHHHHHHHHHhhCCCeEe
Confidence 12233444566666677777788888763
No 369
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.60 E-value=1.2e+02 Score=30.37 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=16.5
Q ss_pred hhCCCEEEEEchhHHHHHHHc
Q 019238 71 ASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~a 91 (344)
.+.++||.+||-|-- +|+.+
T Consensus 74 ~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 74 LRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred HhcCCCEEEEcHHHH-HHHHh
Confidence 456899999999994 88865
No 370
>PRK03094 hypothetical protein; Provisional
Probab=28.51 E-value=1.4e+02 Score=21.39 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhcCCeEEEE
Q 019238 173 EMEAVIIIDILRRAKANVVVA 193 (344)
Q Consensus 173 ~~e~~~~~~~l~~~~~~v~~~ 193 (344)
+..++.+.+.|+..||++.-+
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l 27 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQL 27 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEec
Confidence 346677889999999998644
No 371
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.09 E-value=82 Score=28.18 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa 270 (344)
.++|++++.||.+ .++..++.+...+.||.+|-.|..-+|+
T Consensus 32 ~~~D~vi~iGGDG---------T~L~a~~~~~~~~iPilGIN~G~lGFL~ 72 (259)
T PRK00561 32 DGADYLFVLGGDG---------FFVSTAANYNCAGCKVVGINTGHLGFYT 72 (259)
T ss_pred CCCCEEEEECCcH---------HHHHHHHHhcCCCCcEEEEecCCCcccc
Confidence 4579999999954 3455666666788999999988533333
No 372
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=28.08 E-value=65 Score=30.39 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+..-.+.||++.++|....+||+|+. +|..
T Consensus 68 ~~~g~~~Ir~fV~~GG~YlGiCAGaY--~as~ 97 (367)
T PF09825_consen 68 NGEGNRRIRQFVENGGGYLGICAGAY--YASS 97 (367)
T ss_pred ChHHHHHHHHHHHcCCcEEEECcchh--hhcc
Confidence 45667889999999999999999994 5543
No 373
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.35 E-value=3.7e+02 Score=26.91 Aligned_cols=136 Identities=17% Similarity=0.068 Sum_probs=68.5
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~ 240 (344)
.++.++..+... .-...+.+.|...|+.+.......+....+..... ..-..+.+....+.|+||-.|| +...
T Consensus 210 ~k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~-~~~~~l~~~~~~r~D~IIAIGG-Gsv~---- 282 (542)
T PRK14021 210 VKVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVAN-GIWQRLGNEGFTRSDAIVGLGG-GAAT---- 282 (542)
T ss_pred CeEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHH-HHHHHHHhcCCCCCcEEEEEcC-hHHH----
Confidence 567666655443 22345667777788765332222211101100000 0000112222246899997777 2222
Q ss_pred CHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCC-CCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeC
Q 019238 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGL-LKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTS 309 (344)
Q Consensus 241 ~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGl-L~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~ 309 (344)
.+-.++...+.+|.+...+.+- + ||..-- ..|+..--++..+. +...++....++.|-.++..
T Consensus 283 --D~AKfvA~~y~rGi~~i~vPTT--l-lA~vDss~ggkt~in~~~gkn-~ig~f~~P~~V~iD~~~l~t 346 (542)
T PRK14021 283 --DLAGFVAATWMRGIRYVNCPTS--L-LAMVDASTGGKTGINTPQGKN-LVGSFYTPAGVLADTKTLAT 346 (542)
T ss_pred --HHHHHHHHHHHcCCCEEEeCCh--H-HhhhccccCCceEEECCCCce-eEeeecCCCEEEEeHHHHhh
Confidence 2456777778889999999985 3 544322 23443333333322 23345566777777766643
No 374
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=27.32 E-value=1.4e+02 Score=26.82 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=28.1
Q ss_pred CCCeEEEEeCCCc-----chhHHHHHHHHHHhcCCeEEEEEeCC
Q 019238 159 NSPQILVPIANGS-----EEMEAVIIIDILRRAKANVVVASVAD 197 (344)
Q Consensus 159 ~~~~v~ill~~g~-----~~~e~~~~~~~l~~~~~~v~~~s~~~ 197 (344)
+++||+|+.-... +..+...+.+.|++.|+++..+....
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 4578997774433 33444788999999999998886554
No 375
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=27.26 E-value=95 Score=27.75 Aligned_cols=61 Identities=10% Similarity=-0.072 Sum_probs=37.0
Q ss_pred hHHHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 126 GKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 126 ~~a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
+...++.+.+.|.|+.... +....+.++|++++.+ .|...=+..+.+.+.+.|+++.+...
T Consensus 10 ~rV~~~a~elgY~pn~~a~---------~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 73 (309)
T PRK11041 10 QRVEQAVLEVGYSPQSLGR---------NLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDC 73 (309)
T ss_pred HHHHHHHHHHCCCcCHHHH---------HhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3455667777776643211 2223345789998864 23443445677778888988876544
No 376
>PRK06242 flavodoxin; Provisional
Probab=27.23 E-value=98 Score=24.52 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHh-cCCcEEEEcchh
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE-SNRPYGAICASP 265 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~-~~k~I~aic~G~ 265 (344)
.+||.|++.... ..-.-.+.+.+||.+... ++|.++.+|++.
T Consensus 42 ~~~d~ii~g~pv---y~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g 84 (150)
T PRK06242 42 SEYDLIGFGSGI---YFGKFHKSLLKLIEKLPPVSGKKAFIFSTSG 84 (150)
T ss_pred hHCCEEEEeCch---hcCCcCHHHHHHHHhhhhhcCCeEEEEECCC
Confidence 689999986532 112235677888877644 689998888874
No 377
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=27.15 E-value=48 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.9
Q ss_pred HHHHHhhCCCEEEEEchhHH
Q 019238 66 IVKKQASDGRLYAAICVFLA 85 (344)
Q Consensus 66 ~l~~~~~~g~~i~aiC~g~~ 85 (344)
.|-+.+++||.|.|+|-|-.
T Consensus 38 ~iP~~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 38 MIPQSFRRGKSIIAVLEGEC 57 (71)
T ss_pred EChHHHcCCceEEEEEcCce
Confidence 34456789999999999963
No 378
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=27.11 E-value=1.4e+02 Score=25.69 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 160 ~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
.+|+.|++.||....++..+...++..|+++..++.
T Consensus 108 ~~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~Vgv 143 (224)
T cd01475 108 VPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGV 143 (224)
T ss_pred CCeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeC
Confidence 379999999998777787888889999888776665
No 379
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.99 E-value=1.3e+02 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCcchh----HHHHHHHHHHhcCCeEEEEEeCC
Q 019238 160 SPQILVPIANGSEEM----EAVIIIDILRRAKANVVVASVAD 197 (344)
Q Consensus 160 ~~~v~ill~~g~~~~----e~~~~~~~l~~~~~~v~~~s~~~ 197 (344)
.+||+||+.||.+.. .+..+.+.++..|+++..++...
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 379999999998753 45667888999999998888743
No 380
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=26.90 E-value=1.3e+02 Score=28.52 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCc--chhHHHHHHHHHH--hcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch
Q 019238 160 SPQILVPIANGS--EEMEAVIIIDILR--RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (344)
Q Consensus 160 ~~~v~ill~~g~--~~~e~~~~~~~l~--~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~ 235 (344)
.++|.|+-...+ ...=.-.+.+-++ ..|.++++.....- .++....++ .++|+|++.......
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~-----------~~~~i~~~~--~~~d~ii~GspT~~~ 313 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKS-----------DKNDIITEV--FKSKAILVGSSTINR 313 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCC-----------CHHHHHHHH--HhCCEEEEECCCcCc
Confidence 467776665533 3333334456666 45666666555331 011112233 468999996542111
Q ss_pred HhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 236 QAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 236 ~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
..+..-..+++.++...-++|+++.+++-.
T Consensus 314 ~~~~~~~~~l~~l~~~~~~~K~~a~FGsyg 343 (394)
T PRK11921 314 GILSSTAAILEEIKGLGFKNKKAAAFGSYG 343 (394)
T ss_pred cccHHHHHHHHHhhccCcCCCEEEEEecCC
Confidence 122222344555555555789888888643
No 381
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=26.83 E-value=3e+02 Score=21.95 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCeEEEEeCC--CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHh
Q 019238 160 SPQILVPIAN--GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (344)
Q Consensus 160 ~~~v~ill~~--g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~ 237 (344)
|+||+|+-+. |-...=.-.+.+.|...++++.+..... ..+.....||.+++.........
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~d~~~~g~~t~~~ge 63 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPG-----------------IKDDLLESYDELLLGTPTWGAGE 63 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCC-----------------cchhhhccCCEEEEEeCCCCCCc
Confidence 4677777765 3333333355666666666663332222 12211146888888655322222
Q ss_pred hhcCHHHHHHHHHH---HhcCCcEEEEcch
Q 019238 238 FAKSKKLVNMLKKQ---KESNRPYGAICAS 264 (344)
Q Consensus 238 l~~~~~l~~~l~~~---~~~~k~I~aic~G 264 (344)
+. ....+|+... .-+++.++.++.|
T Consensus 64 ~~--~~~~~f~~~~~~~~~~~k~~a~~g~g 91 (151)
T COG0716 64 LP--DDWYDFIEELEPIDFKGKLVAVFGLG 91 (151)
T ss_pred CC--ccHHHHHHHhcccCcCCceEEEEecc
Confidence 22 2344444444 3456666666654
No 382
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=26.02 E-value=85 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.++.++++++....+.|++||-|=- ++|++
T Consensus 80 ~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 80 KKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred HHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 4677888888888899999999995 88865
No 383
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=25.82 E-value=61 Score=30.46 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.....++++++.++ +|+.+||-|-- +|+.+
T Consensus 224 ~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a 253 (354)
T PRK12838 224 LQPYLPEIKKLISS-YPILGICLGHQ-LIALA 253 (354)
T ss_pred hHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence 35667888888877 99999999995 78754
No 384
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=25.76 E-value=2.9e+02 Score=23.70 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=40.2
Q ss_pred CccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeee
Q 019238 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282 (344)
Q Consensus 222 ~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~ 282 (344)
.-|.+++.-. ++.+.-...|..||-.....||..--.-+|+ .||+.|+++-.
T Consensus 87 aAD~vVi~~P---M~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp------~GLl~gKKv~~ 138 (202)
T COG1182 87 AADKVVIAAP---MYNFNIPAQLKAYIDHIAVAGKTFKYTENGP------VGLLTGKKVLI 138 (202)
T ss_pred hcCeEEEEec---ccccCCCHHHHHHHHHHhcCCceEEeccCCc------ccccCCceEEE
Confidence 4577777543 5555567789999999999999999888886 48888888754
No 385
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.67 E-value=1.9e+02 Score=25.12 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=33.1
Q ss_pred eEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 162 ~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
+|++++.+ .|+..-+..+.+.+++.|+++.++..... +-. . ...+.......+|.+++.+.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~-~~~-------~-~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAENS-AKK-------E-LENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCCCC-HHH-------H-HHHHHHHHhcCCCEEEEcCC
Confidence 46666653 44444455666777788888877654332 100 0 01122222357899988653
No 386
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.65 E-value=3.7e+02 Score=23.65 Aligned_cols=94 Identities=7% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccce-eeeeccccc---cccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV-KLVADMLID---EAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~-~v~~~~~~~---~~~~~~~D~liipGG~~~ 234 (344)
.-+||+++.+ |.+.=-....+.|+..|+++.-...-+ ......+ .+.++...+ +...++.|+|++.+- +
T Consensus 119 g~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~---~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT--n 191 (239)
T TIGR02990 119 GVRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLG---LTDDREMARISPDCIVEAALAAFDPDADALFLSCT--A 191 (239)
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccC---CCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC--C
Confidence 4589987765 222222456788999999986553222 1111111 233332222 222467999999864 1
Q ss_pred hHhhhcCHHHHHHHHHHHhcCCcEEEEcchh
Q 019238 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (344)
Q Consensus 235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~ 265 (344)
.. .-.+++-|++. -||||.+.-...
T Consensus 192 Lr----t~~vi~~lE~~--lGkPVlsSNqat 216 (239)
T TIGR02990 192 LR----AATCAQRIEQA--IGKPVVTSNQAT 216 (239)
T ss_pred ch----hHHHHHHHHHH--HCCCEEEHHHHH
Confidence 22 22344445443 489998876553
No 387
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.13 E-value=2.1e+02 Score=24.88 Aligned_cols=85 Identities=15% Similarity=-0.015 Sum_probs=46.7
Q ss_pred eEEEEeCC----CcchhHHHHHHHHHHhcCCeEEEEEeCC-CceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238 162 QILVPIAN----GSEEMEAVIIIDILRRAKANVVVASVAD-KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 162 ~v~ill~~----g~~~~e~~~~~~~l~~~~~~v~~~s~~~-~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
||++++.+ .|...-+.++.+.++..|+++.+..... . + .. -...++.......|++++.+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~-~-~~-------~~~~i~~l~~~~vdgiii~~~~~--- 68 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFD-V-AD-------MARLIEAAIAAKPDGIVVTIPDP--- 68 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCC-H-HH-------HHHHHHHHHHhCCCEEEEeCCCh---
Confidence 46666643 2444445567777888889887765543 2 1 00 00122222335689999865421
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
..+.+.++...+++.++..+..
T Consensus 69 -----~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 69 -----DALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred -----HHhHHHHHHHHHCCCeEEEeCC
Confidence 1223345666666778877754
No 388
>PRK03670 competence damage-inducible protein A; Provisional
Probab=25.09 E-value=2.1e+02 Score=25.40 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccch-H-------------h
Q 019238 172 EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-Q-------------A 237 (344)
Q Consensus 172 ~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~-~-------------~ 237 (344)
.+.....+...|...|+++..+..-+...- .+. ..+.......+|+||+.||.+.. + .
T Consensus 18 ~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~------~I~--~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g~~ 89 (252)
T PRK03670 18 VDSNSAFIAQKLTEKGYWVRRITTVGDDVE------EIK--SVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALGRE 89 (252)
T ss_pred EehhHHHHHHHHHHCCCEEEEEEEcCCCHH------HHH--HHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhCCC
Confidence 455566788889999988765443221000 000 12222222358999999996421 1 1
Q ss_pred hhcCHHHHHHHHHHHhc
Q 019238 238 FAKSKKLVNMLKKQKES 254 (344)
Q Consensus 238 l~~~~~l~~~l~~~~~~ 254 (344)
+..++...+.|++++.+
T Consensus 90 l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 90 LVLCEDCLERIKEFYEE 106 (252)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 35578888899988854
No 389
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.83 E-value=2.5e+02 Score=23.75 Aligned_cols=89 Identities=8% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCeEEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 160 SPQILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 160 ~~~v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
.+||.+...+ ...+.-...+...|+..|+++......- .++.-.+.+...++|+|.+..-.. ..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~------------p~~~l~~~~~~~~~d~v~lS~~~~--~~~ 147 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV------------PPEEFVEAVKEHKPDILGLSALMT--TTM 147 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEecccc--ccH
Confidence 3577766666 4567777888999999999986655332 233334444446789888865321 222
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEc
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAIC 262 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic 262 (344)
..-+.+++.|++...+.++...+|
T Consensus 148 ~~~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 148 GGMKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHHHHHCCCCcCCeEEEE
Confidence 333455555555433224444444
No 390
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=24.82 E-value=1.7e+02 Score=21.20 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCCEEEEEchhHHHHHHHcCCCCCCC----------CCCE---EcCCCCCcHHHHHHHHHHHHcCh
Q 019238 64 ESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------DGKV---VTTRGPGTPMEFVVALVEQLYGK 125 (344)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------dg~~---iT~~g~~~~~~~~~~lv~~~~g~ 125 (344)
.+++++.+++...+..+|.-...+=.-+.+|.+|. +|+. +.++--+.+-+++.++-+.+.+.
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lga~ 76 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLGAQ 76 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-E
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCCE
Confidence 46889999999999999875544666778899888 5653 33444444677777776665543
No 391
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=24.81 E-value=36 Score=27.17 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=51.8
Q ss_pred CeEEEEeCC----CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeecc-ce------eeeeccccccccCCCccEEEEc
Q 019238 161 PQILVPIAN----GSEEMEAVIIIDILRRAKANVVVASVADKLEILASC-QV------KLVADMLIDEAAKLSYDLIVLP 229 (344)
Q Consensus 161 ~~v~ill~~----g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~-g~------~v~~~~~~~~~~~~~~D~liip 229 (344)
|||+++... +....=+-.+.+.+...|++++++....- +...-. +. .-......+.+ .+.|++|+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKL--KEADGIIFA 77 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHH--HHSSEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhce--ecCCeEEEe
Confidence 577777654 33444444566777777999999988763 222110 00 00011122333 567999886
Q ss_pred CCc--cchHhhhcCHHHHHHHH---HHHhcCCcEEEEcch
Q 019238 230 GGL--GGAQAFAKSKKLVNMLK---KQKESNRPYGAICAS 264 (344)
Q Consensus 230 GG~--~~~~~l~~~~~l~~~l~---~~~~~~k~I~aic~G 264 (344)
.-. .... ..-+.+++++. ...-++|+++.++.|
T Consensus 78 sP~y~~~~s--~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 78 SPVYNGSVS--GQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEEBTTBE---HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred ecEEcCcCC--hhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 421 1111 12234555554 233468888888665
No 392
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=24.77 E-value=2.7e+02 Score=25.15 Aligned_cols=38 Identities=21% Similarity=0.065 Sum_probs=24.6
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
++..|++++.+ .|...=+..+.+.+...||.+.+....
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~ 99 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSD 99 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789998864 233333445666777889998776553
No 393
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=24.74 E-value=2.5e+02 Score=25.20 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=31.5
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCC
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~ 198 (344)
|||++-=-||+...-+..+.+.|+..+ ++.+++|...
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 467777778999999999999999887 8999998875
No 394
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=24.64 E-value=2.7e+02 Score=25.23 Aligned_cols=37 Identities=11% Similarity=-0.066 Sum_probs=23.6
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEe
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASV 195 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~ 195 (344)
+++.|++++.+ .|+..=+.++.+.+...|+.+.+...
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~ 102 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQG 102 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45789998864 23333334566777888888766543
No 395
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=24.53 E-value=91 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.+...+.+++.. .++++.+||-|-- +|+.+
T Consensus 297 ~~~~ie~ik~l~-~~iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 297 VPYAVETVKELL-GKVPVFGICMGHQ-LLGQA 326 (415)
T ss_pred hhHHHHHHHHHH-hCCCEEEEcHHHH-HHHHh
Confidence 356677777766 4789999999995 88865
No 396
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=24.48 E-value=4.8e+02 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeee
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~ 282 (344)
+.+|+++|... .| ..++-+|+.+ ++|+.++|.++.. .|. .-||+++.
T Consensus 68 ~GvdaiiIaCf--------~D-Pgl~~~Re~~--~~PviGi~eAsv~-~A~---~vgrrfsV 114 (230)
T COG4126 68 QGVDAIIIACF--------SD-PGLAAARERA--AIPVIGICEASVL-AAL---FVGRRFSV 114 (230)
T ss_pred cCCcEEEEEec--------CC-hHHHHHHHHh--CCCceehhHHHHH-HHH---HhcceEEE
Confidence 45899999664 23 5677788776 6899999999633 333 46777643
No 397
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=24.41 E-value=2.1e+02 Score=22.96 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
..+++.|++.||....+.......++..|+++..++..
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 102 GVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
Confidence 34788999999987767766677788888877766654
No 398
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=24.40 E-value=53 Score=26.55 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=44.5
Q ss_pred hHHHHHhCCCeEEEEEecCCcceecCCCCEEEcCccccccccC---CCchhh-hcccCChHHHHHHHHHhhCCCEEEEEc
Q 019238 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAIC 81 (344)
Q Consensus 6 ~~~~l~~~~~~~~~vs~~~~~~v~~~~g~~~~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (344)
..+.|++.|++++.+..... .. . .....+.+.+.- ||.+.. ....++..+.+.|++.+++|+++++..
T Consensus 5 ~~~~f~~~g~~v~~l~~~~~-~~--~-----~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~S 76 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSDR-ND--A-----DILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTS 76 (154)
T ss_dssp HHHHHHHCT-EEEECCCTSC-GH--H-----HHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHCCCEEEEEeccCC-Ch--H-----HHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEC
Confidence 35678888888776666531 10 0 111112222211 663221 112345668899999999999999999
Q ss_pred hhHHHHHHHcCC
Q 019238 82 VFLAVALGSWGL 93 (344)
Q Consensus 82 ~g~~~~La~aGl 93 (344)
+|++ ++...+.
T Consensus 77 AGA~-i~~~~~~ 87 (154)
T PF03575_consen 77 AGAM-ILGPSIE 87 (154)
T ss_dssp HHHH-CTSSBSC
T ss_pred hHHh-hccCcee
Confidence 9995 6544433
No 399
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=24.39 E-value=1.4e+02 Score=26.35 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred CeEEEEeCCCcc--hhHHHHHHHHHHhcC--CeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchH
Q 019238 161 PQILVPIANGSE--EMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 161 ~~v~ill~~g~~--~~e~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
.||+.+..-|+. ..++.-+.+.|-... +++.+ ++.. .|. .+. ++.|+.+|-|+..
T Consensus 4 ikva~~~L~gC~GC~~slldl~E~L~dll~~~div~-~~~l-------------~D~--kei--PEvDValVEGsV~--- 62 (247)
T COG1941 4 IKVATVWLTGCSGCHMSLLDLYEKLLDLLEDADIVY-CPTL-------------VDE--KEI--PEVDVALVEGSVC--- 62 (247)
T ss_pred eEEEEEEeccccchHHHHHhHHHHHHHhhhhhcEEE-eecc-------------ccc--ccC--CcccEEEEecccC---
Confidence 478888887663 334444455544332 23322 2211 121 123 4589999999842
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
|+.-++.+++..++.+.+.|+++=
T Consensus 63 ----~ee~lE~v~ElRekakivVA~GsC 86 (247)
T COG1941 63 ----DEEELELVKELREKAKIVVALGSC 86 (247)
T ss_pred ----cHHHHHHHHHHHHhCcEEEEEecc
Confidence 667788999999999999998753
No 400
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=24.16 E-value=1.2e+02 Score=25.56 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
+.++|+++|-|-.. . +....+.-+.++..+-|+|.|+++
T Consensus 71 PR~ADvllVtG~VT-~----~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 71 PRQADMILVLGTIT-Y----KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred cccceEEEEeccCc-h----hhHHHHHHHHHhcCCCCeEEEecc
Confidence 46789999998642 1 233445555556667899998865
No 401
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=24.11 E-value=1.3e+02 Score=27.99 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.6
Q ss_pred cCChHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
.....+.+-|++....|+++.+||-|-- +|-+-
T Consensus 58 L~~~Gf~eplr~YiesgkPfmgicvGlQ-aLF~g 90 (541)
T KOG0623|consen 58 LNRTGFAEPLRKYIESGKPFMGICVGLQ-ALFDG 90 (541)
T ss_pred HhhhhhHHHHHHHHhcCCCeEeehhhHH-HHhcc
Confidence 3567888899999999999999999995 66543
No 402
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.69 E-value=1.9e+02 Score=28.42 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=49.4
Q ss_pred CCCeEEEEeCC--CcchhHHHHHHHHHHhc--CCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccc
Q 019238 159 NSPQILVPIAN--GSEEMEAVIIIDILRRA--KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (344)
Q Consensus 159 ~~~~v~ill~~--g~~~~e~~~~~~~l~~~--~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~ 234 (344)
+.+||.|+-.. |....=.-.+.+-+++. |.++++...... .++....++ .++|+|++..-...
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~-----------~~~~i~~~~--~~ad~vilGspT~~ 316 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS-----------DKNEILTNV--FRSKGVLVGSSTMN 316 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCC-----------CHHHHHhHH--hhCCEEEEECCccC
Confidence 35677665544 44443344556667655 456655554331 011112222 46899888543211
Q ss_pred hHhhhcCHHHHHHHHHHHhcCCcEEEEcchhh
Q 019238 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (344)
Q Consensus 235 ~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~ 266 (344)
...+..-..+++.+....-++|.+++++++.|
T Consensus 317 ~~~~p~~~~fl~~l~~~~l~gK~~~vFGSygw 348 (479)
T PRK05452 317 NVMMPKIAGLLEEITGLRFRNKRASAFGSHGW 348 (479)
T ss_pred CcchHHHHHHHHHhhccCcCCCEEEEEECCCc
Confidence 11222223344555555567899999888754
No 403
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.62 E-value=3.3e+02 Score=23.00 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=48.7
Q ss_pred CeEEEEeCC-CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhh
Q 019238 161 PQILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (344)
Q Consensus 161 ~~v~ill~~-g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~ 239 (344)
.+|.+...+ ...+.-...+...|+..||++..+..+- .++.-.+.+...++|+|.+..-.. .
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v------------p~e~~v~~~~~~~pd~v~lS~~~~--~--- 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV------------PIDTVVEKVKKEKPLMLTGSALMT--T--- 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC------------CHHHHHHHHHHcCCCEEEEccccc--c---
Confidence 566666655 5688888899999999999998776543 223233444446789998865421 1
Q ss_pred cCHHHHHHHHHHHhc
Q 019238 240 KSKKLVNMLKKQKES 254 (344)
Q Consensus 240 ~~~~l~~~l~~~~~~ 254 (344)
..+.+.++++...+.
T Consensus 148 ~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 148 TMYGQKDINDKLKEE 162 (197)
T ss_pred CHHHHHHHHHHHHHc
Confidence 223345555555544
No 404
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.57 E-value=4.2e+02 Score=27.01 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeec--cccccccCCCccEEEEcCCccchH
Q 019238 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVAD--MLIDEAAKLSYDLIVLPGGLGGAQ 236 (344)
Q Consensus 159 ~~~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~--~~~~~~~~~~~D~liipGG~~~~~ 236 (344)
++-+|+++--.|.-..| +.+.+.+.|+-...+-.-|+.+.. |..+ .| .-+.+. ++-.+|++-|-.+
T Consensus 166 ~pG~VgiVSqSGtL~~e---i~~~~~~~GlG~S~~VsiGnd~~~---g~~~-~D~L~~~~~D--p~Tk~IvlygEiG--- 233 (608)
T PLN02522 166 RPGSVGFVSKSGGMSNE---MYNVIARVTDGIYEGIAIGGDVFP---GSTL-SDHVLRFNNI--PQIKMIVVLGELG--- 233 (608)
T ss_pred CCCcEEEEeccHHHHHH---HHHHHHHcCCCeEEEEEeCCCCCC---CCCH-HHHHHHHhcC--CCCCEEEEEEecC---
Confidence 35679999988876666 446677777655433333331221 1111 01 012222 4567777765311
Q ss_pred hhhcCHHHHHHHHHHHhcCCcEEEEcchhhh-------hhhhcCCCCCCeeeeCcCchhhhccCCcCCCcEEEeCCeEeC
Q 019238 237 AFAKSKKLVNMLKKQKESNRPYGAICASPAL-------VLEPHGLLKGKKATAFPAMCNKLSNQSEIENRVVVDGNLVTS 309 (344)
Q Consensus 237 ~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~-------lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~liT~ 309 (344)
..+.+++.+++++.. ..|||.+++.|..- ....+|-+-|....+.....+.|+++ .++-+
T Consensus 234 -g~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~a-----------Gv~vv 300 (608)
T PLN02522 234 -GRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDA-----------GAIVP 300 (608)
T ss_pred -chhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHC-----------CCeEe
Confidence 124567889998866 78999999988521 01112322222211111122333332 23444
Q ss_pred CCcccHHHHHHHHHHHhcCH
Q 019238 310 RGPGTSMEFALAIVEKFFGR 329 (344)
Q Consensus 310 ~g~~~~~~~~~~li~~l~g~ 329 (344)
.+.....+++.+++++|..+
T Consensus 301 ~s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 301 TSFEALEAAIKETFEKLVEE 320 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhC
Confidence 56667778888888777654
No 405
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=23.37 E-value=2.9e+02 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.073 Sum_probs=24.5
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
++..|++++.+ .|...=+..+.+.+...||.+.+....
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~ 98 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSD 98 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45789998864 223222345667777889998776544
No 406
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=23.06 E-value=3.4e+02 Score=24.33 Aligned_cols=38 Identities=8% Similarity=-0.122 Sum_probs=25.4
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
+++.|++++.+ .|...=+.++.+.+.+.||++.+....
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 95 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTE 95 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45789988864 344333456777888889998765443
No 407
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=22.87 E-value=2.6e+02 Score=25.79 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=37.2
Q ss_pred HHHHhhcccccccCCCcceeeeccceeeecCCCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCC
Q 019238 128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVAD 197 (344)
Q Consensus 128 a~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~ 197 (344)
..++.+.+.|.|+.... +-...++..|++++.+ .|...=+.++.+.+.+.||.+.+.....
T Consensus 35 V~~a~~elgY~pN~~Ar---------~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~ 98 (333)
T COG1609 35 VLAAIKELGYRPNAVAR---------SLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDD 98 (333)
T ss_pred HHHHHHHHCCCCCHHHH---------HHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 44555666666543111 1122356788988874 3344445567778888999998877654
No 408
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=22.80 E-value=95 Score=25.49 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.+||.|++..+ .+.-..++.+.+||++. ++|.|+-+++.
T Consensus 38 ~~yD~i~lG~w---~d~G~~d~~~~~fl~~l--~~KkV~lF~T~ 76 (160)
T PF12641_consen 38 EDYDLIFLGFW---IDKGTPDKDMKEFLKKL--KGKKVALFGTA 76 (160)
T ss_pred CCCCEEEEEcC---ccCCCCCHHHHHHHHHc--cCCeEEEEEec
Confidence 78999999554 23335688999999985 45667666654
No 409
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=22.66 E-value=65 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHhhCCCEEEEEchhH
Q 019238 67 VKKQASDGRLYAAICVFL 84 (344)
Q Consensus 67 l~~~~~~g~~i~aiC~g~ 84 (344)
|-+-+++||-|.|+|-|-
T Consensus 37 iPqeFkrGKsIiAV~EGe 54 (67)
T TIGR02922 37 IPQEFKRGKSIIAVCEGE 54 (67)
T ss_pred cchHHcCCCeEEEEEecc
Confidence 444578899999999986
No 410
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=22.58 E-value=74 Score=31.24 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
..+.++|+++ |+++.+||.|- -+|++.
T Consensus 55 ~~l~~~i~~~---g~pvlGICgG~-QmLg~~ 81 (476)
T PRK06278 55 DELKKEILNF---DGYIIGICSGF-QILSEK 81 (476)
T ss_pred HHHHHHHHHc---CCeEEEEcHHH-Hhcccc
Confidence 4556666666 89999999999 599987
No 411
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.36 E-value=3e+02 Score=24.19 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=35.1
Q ss_pred CeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCC
Q 019238 161 PQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (344)
Q Consensus 161 ~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG 231 (344)
++|++++.+ .|...-+..+.+.+++.|+++.+...... +- . -...++.....+.|.+|+.+.
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~-~~----~----~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGS-EA----G----QAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCC-HH----H----HHHHHHHHHHcCCCEEEEcCC
Confidence 467877764 33333444666778888998876544321 10 0 001233333367899999764
No 412
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=22.09 E-value=1.5e+02 Score=24.97 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.1
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
+.++|+++|-|... .+....+.-+.++..+-|+|.|+++
T Consensus 71 PR~ADillVtG~VT-----~~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 71 PRQADVMIVAGTVT-----YKMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CccccEEEEeCcCc-----hhhHHHHHHHHHhCCCCCEEEEecc
Confidence 46799999998642 1223445566667788899998864
No 413
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=21.65 E-value=4.7e+02 Score=21.76 Aligned_cols=112 Identities=24% Similarity=0.233 Sum_probs=61.9
Q ss_pred CeEEEEeCCCcc-----hhHHHHHHHHHHhcC-CeEEEEEeCCC-ceeeecc----------c--eeeeeccccccccCC
Q 019238 161 PQILVPIANGSE-----EMEAVIIIDILRRAK-ANVVVASVADK-LEILASC----------Q--VKLVADMLIDEAAKL 221 (344)
Q Consensus 161 ~~v~ill~~g~~-----~~e~~~~~~~l~~~~-~~v~~~s~~~~-~~v~~~~----------g--~~v~~~~~~~~~~~~ 221 (344)
|||+++...--. ..=...+.+.+...+ .+++++..... .|+.+.. + ..+..+. ++.. .
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l--~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEEL--L 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHH--H
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHH--H
Confidence 467777654222 222345667788888 78888877653 1221110 0 1122222 3444 5
Q ss_pred CccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcchhhhhhhhcCCCCCCeeee
Q 019238 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATA 282 (344)
Q Consensus 222 ~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G~~~lLa~aGlL~g~~~T~ 282 (344)
..|.||+.-- .....-...+..||.+....|... .--.|. -...|+|.||++..
T Consensus 78 ~AD~iV~~~P---l~~~~~Pa~lK~~iD~v~~~g~~~-~~~~g~---~~~~~~L~gKk~~~ 131 (199)
T PF02525_consen 78 WADHIVFAFP---LYWFSMPAQLKGWIDRVFTPGFTF-YTPDGK---YPSGGLLKGKKALL 131 (199)
T ss_dssp HSSEEEEEEE---EBTTBC-HHHHHHHHHHSHTTTSE-EETTST---TCGEESTTTSEEEE
T ss_pred HcCcceEecc---ceecccChhHHHHHHHhCcCCeee-eccccc---cccccccccccEEE
Confidence 6788888532 223334567889999999888866 444441 01247888998766
No 414
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.63 E-value=1.8e+02 Score=22.12 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.6
Q ss_pred CCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcch
Q 019238 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (344)
Q Consensus 221 ~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~G 264 (344)
.+-|++|+..-.+ ..+.+++.++...++|.++.+++..
T Consensus 45 ~~~d~~I~iS~sG------~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 45 DEDTLVIAISQSG------ETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCCcEEEEEeCCc------CCHHHHHHHHHHHHcCCeEEEEECC
Confidence 4557888877533 4567899999999999999999864
No 415
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.53 E-value=5.8e+02 Score=22.94 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=41.9
Q ss_pred CeEEEEeCCCc-chhHHH-HHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhh
Q 019238 161 PQILVPIANGS-EEMEAV-IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (344)
Q Consensus 161 ~~v~ill~~g~-~~~e~~-~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l 238 (344)
|||+|+.-++- ...++. .+.+.| ..|+++.+-..... ... ..+ ....+ .+.|++++.||.+..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~-~~~-~~~------~~~~~---~~~D~vi~lGGDGT~--- 65 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAK-ALG-MDG------LDIEE---INADVIITIGGDGTI--- 65 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhh-hcC-ccc------Ccccc---cCCCEEEEEcCcHHH---
Confidence 56888877654 333333 344445 45666654332211 110 000 01112 257999999996532
Q ss_pred hcCHHHHHHHHHHHhcCCcEEEEcchhh
Q 019238 239 AKSKKLVNMLKKQKESNRPYGAICASPA 266 (344)
Q Consensus 239 ~~~~~l~~~l~~~~~~~k~I~aic~G~~ 266 (344)
+.-.+ ....||.+|-.|..
T Consensus 66 ------L~a~~---~~~~PilGIN~G~l 84 (271)
T PRK01185 66 ------LRTLQ---RAKGPILGINMGGL 84 (271)
T ss_pred ------HHHHH---HcCCCEEEEECCCC
Confidence 22222 22359999988853
No 416
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.27 E-value=2.9e+02 Score=20.83 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeeccccccccCCCccEEEEcCCccchHhhhcCHHHHHH
Q 019238 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (344)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~liipGG~~~~~~l~~~~~l~~~ 247 (344)
........+..+...|+..|+++......- .+..-.+.+...++|+|.+..-.. .....-+.+++.
T Consensus 8 ~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~------------~~~~l~~~~~~~~pdvV~iS~~~~--~~~~~~~~~i~~ 73 (119)
T cd02067 8 GGDGHDIGKNIVARALRDAGFEVIDLGVDV------------PPEEIVEAAKEEDADAIGLSGLLT--THMTLMKEVIEE 73 (119)
T ss_pred CCchhhHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHH
Confidence 345577788888999999999986554321 122223333446789999866421 222233445555
Q ss_pred HHHH
Q 019238 248 LKKQ 251 (344)
Q Consensus 248 l~~~ 251 (344)
+++.
T Consensus 74 l~~~ 77 (119)
T cd02067 74 LKEA 77 (119)
T ss_pred HHHc
Confidence 5544
No 417
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.11 E-value=2.9e+02 Score=19.00 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeeccceeeeec
Q 019238 164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVAD 212 (344)
Q Consensus 164 ~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~~ 212 (344)
.+++|+ +..+...+-..|+..|+.++++.... .+.+..|+.+..+
T Consensus 4 ~~i~F~--st~~a~~~ek~lk~~gi~~~liP~P~--~i~~~CG~al~~~ 48 (73)
T PF11823_consen 4 YLITFP--STHDAMKAEKLLKKNGIPVRLIPTPR--EISAGCGLALRFE 48 (73)
T ss_pred EEEEEC--CHHHHHHHHHHHHHCCCcEEEeCCCh--hccCCCCEEEEEC
Confidence 345555 34566778889999999988876544 7778888877665
No 418
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=20.52 E-value=3.6e+02 Score=24.47 Aligned_cols=38 Identities=3% Similarity=-0.136 Sum_probs=24.9
Q ss_pred CCCeEEEEeCC---CcchhHHHHHHHHHHhcCCeEEEEEeC
Q 019238 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (344)
Q Consensus 159 ~~~~v~ill~~---g~~~~e~~~~~~~l~~~~~~v~~~s~~ 196 (344)
.++.|++++.+ .|+..=+.++.+.++..|+++.++...
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 98 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAW 98 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45788988864 334333456667777789988776543
No 419
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=20.42 E-value=2.5e+02 Score=23.66 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCcch---hHHHHHHHHHHhcCCeEEEEEeCC
Q 019238 160 SPQILVPIANGSEE---MEAVIIIDILRRAKANVVVASVAD 197 (344)
Q Consensus 160 ~~~v~ill~~g~~~---~e~~~~~~~l~~~~~~v~~~s~~~ 197 (344)
.+|+.|++.||.+. .+...+...|+..|+.+..++...
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~ 171 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQ 171 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 57999999986432 346677888999999998888754
No 420
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=20.36 E-value=2.5e+02 Score=21.76 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=56.8
Q ss_pred CeEEEEeCCCcchhHHHHHHHHHHhcCCeEEEEEeCCCceeeecc---ceeeeec-------cccccc-cCCCccEEEEc
Q 019238 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASC---QVKLVAD-------MLIDEA-AKLSYDLIVLP 229 (344)
Q Consensus 161 ~~v~ill~~g~~~~e~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~---g~~v~~~-------~~~~~~-~~~~~D~liip 229 (344)
|||.+.+.-..........+..|.+.|+++.++-.+....+.+.. +-.+..+ ...... ....+|+++|+
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~~vVa 80 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELSRWADAMVVA 80 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHHHTESEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhccccchhhhccccCCCCCCcCcccccccCCEEEEc
Confidence 688889988888888889999999999999866543322222211 2223322 000000 02468988886
Q ss_pred CCcc-chHhh---hcCHHHHHHHHHHHhcCCc-EEEEcch
Q 019238 230 GGLG-GAQAF---AKSKKLVNMLKKQKESNRP-YGAICAS 264 (344)
Q Consensus 230 GG~~-~~~~l---~~~~~l~~~l~~~~~~~k~-I~aic~G 264 (344)
--.. ...++ ..|-.+...+......+++ |.+.+.-
T Consensus 81 PaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn 120 (129)
T PF02441_consen 81 PATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMN 120 (129)
T ss_dssp EEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEES
T ss_pred ccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCC
Confidence 4321 11111 1233556666666665666 5555543
No 421
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=20.28 E-value=1.7e+02 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=25.8
Q ss_pred CCCccEEEEcCCccchHhhhcCHHHHHHHHHHHhcCCcEEEEcc
Q 019238 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (344)
Q Consensus 220 ~~~~D~liipGG~~~~~~l~~~~~l~~~l~~~~~~~k~I~aic~ 263 (344)
|.+.|+++|.|... . +....+.-+.++..+-|+|.|+++
T Consensus 79 PRhADvllVtG~VT-~----~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 79 PRQADMIMVCGTIT-N----KMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCcceEEEEecCCc-c----hhHHHHHHHHHhcCCCCEEEEecc
Confidence 35689999998742 1 222334445556678899999875
No 422
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=20.18 E-value=1.1e+02 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCEEEEEchhHHHHHHHc
Q 019238 63 LESIVKKQASDGRLYAAICVFLAVALGSW 91 (344)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (344)
+.+-|++.+++|.++++.|+|+. ++.+.
T Consensus 103 ~~~~i~~~~~~G~v~~G~SAGA~-~~~~~ 130 (210)
T cd03129 103 LLDAILKRVARGVVIGGTSAGAA-VMGET 130 (210)
T ss_pred hHHHHHHHHHcCCeEEEcCHHHH-Hhhhc
Confidence 44455556669999999999995 88875
Done!