BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019240
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 198/326 (60%), Gaps = 3/326 (0%)
Query: 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
M+ K I E K LL + + + + + A+VT TD++ L PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 118
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 177
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 237
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEEEVLQYARVVIDV 323
L NY EYSGAP+E++ YA+ ++ +
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSL 326
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 198/326 (60%), Gaps = 3/326 (0%)
Query: 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
M+ K I E K LL + + + + + A+VT TD++ L PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 118
L +RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 177
+ I + R G + F GG+++ + K + + + ++ + D L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 237
+ FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEEEVLQYARVVIDV 323
L NY EYSGAP+E++ YA+ ++ +
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSL 326
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 195/323 (60%), Gaps = 3/323 (0%)
Query: 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF 63
K I E K LL + + + + + A+VT TD++ L PWL S LVVKPD L
Sbjct: 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLI 63
Query: 64 GKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYYLSI 121
+RGK GLV +NL L V ++K RLG E +G G + F++EPFVPH+Q E+Y+ I
Sbjct: 64 KRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCI 123
Query: 122 VSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGKIGD 180
+ R G + F GG+++ + K + + + ++ + D L+ P + + +
Sbjct: 124 YATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILAS 183
Query: 181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 240
FI G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP PFG
Sbjct: 184 FISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFG 243
Query: 241 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R E++I LD K+ ASLK T+LNPKGRIWT VAGGGASV+Y+DT+ DLG +EL N
Sbjct: 244 REAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTICDLGGVNELAN 303
Query: 301 YAEYSGAPNEEEVLQYARVVIDV 323
Y EYSGAP+E++ YA+ ++ +
Sbjct: 304 YGEYSGAPSEQQTYDYAKTILSL 326
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 130/337 (38%), Gaps = 54/337 (16%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVT--ESTDFSELTNKEPWLSSSRLVVKPDMLF 63
+ EY +K+L + GL + A T E+ + + PW VVK +
Sbjct: 3 LHEYQAKQLFARY-----GLPAPVGYACTTPREAEEAASKIGAGPW------VVKCQVHA 51
Query: 64 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 120
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 121 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 175
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 176 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 224
GK+ MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
Query: 225 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVI 321
D V + E N+ + G +E V + ++++
Sbjct: 272 TMDIVKL--HGGEPANFLDVGGGATKERVTEAFKIIL 306
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 130/337 (38%), Gaps = 54/337 (16%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVT--ESTDFSELTNKEPWLSSSRLVVKPDMLF 63
+ EY +K+L + GL + A T E+ + + PW VVK +
Sbjct: 3 LHEYQAKQLFARY-----GLPAPVGYACTTPREAEEAASKIGAGPW------VVKCQVHA 51
Query: 64 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 120
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 121 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 175
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 176 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 224
GK+ MG+ +F + D + IE+NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
Query: 225 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVI 321
D V + E N+ + G +E V + ++++
Sbjct: 272 TMDIVKL--HGGEPANFLDVGGGATKERVTEAFKIIL 306
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 129/337 (38%), Gaps = 54/337 (16%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVT--ESTDFSELTNKEPWLSSSRLVVKPDMLF 63
+ EY +K+L + GL + A T E+ + + PW VVK +
Sbjct: 3 LHEYQAKQLFARY-----GLPAPVGYACTTPREAEEAASKIGAGPW------VVKCQVHA 51
Query: 64 GKRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLS 120
G RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 52 GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 121 IVSDRLGCTISF--SECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR--- 175
V DR + F S GG+EIE+ ++ + + LD PL +P + R
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLI----HKVALD---PLTGPMPYQGRELA 164
Query: 176 ------GKI----GDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 224
GK+ MG+ +F + D + I +NP + G+ LD + D A F
Sbjct: 165 FKLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALF 224
Query: 225 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
+ P R + E +A + + G I MV G G ++
Sbjct: 225 RQ-----------PDLREMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMG 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVI 321
D V + E N+ + G +E V + ++++
Sbjct: 272 TMDIVKL--HGGEPANFLDVGGGATKERVTEAFKIIL 306
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 52 SSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKG-PITTFIVEPF 110
R+V+K + G RGK+G V L + E + LG + KG + +V
Sbjct: 39 GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNI-----KGLTVKKVLVAEA 93
Query: 111 VPHNQEYYLSIVSDRLG--CTISFSECGGIEIE----ENWDKVKTIFLPTEKHMTLDACA 164
V +EYY ++ DR + S+ GG++IE E + + ++ K
Sbjct: 94 VDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAR 153
Query: 165 PLIATLPLEFR-GKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTA 222
++ LE K+ ++ ++ ++ +D S E+NP + +G D + LDD A
Sbjct: 154 EMVKRAGLEGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNA 213
Query: 223 AFKN 226
F++
Sbjct: 214 LFRH 217
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 48/249 (19%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGK 65
++EY SK+L+ ++ G+ +Q + + +E L++ +V+K +L G
Sbjct: 4 LQEYQSKKLMSDN-----GVKVQ----RFFVADTANEALEAAKRLNAKEIVLKAQILAGG 54
Query: 66 RGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVEPFVPH 113
RGK SGL V L D V + K +G + G K + +V +
Sbjct: 55 RGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVAEALDI 112
Query: 114 NQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPTEKHM- 158
++E YL+I+ DR G + S GG++IEE D ++ I + M
Sbjct: 113 SRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMA 172
Query: 159 -TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRG 216
L PL + + D I ++ +F +D + +E+NPF G+ D +
Sbjct: 173 ENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKI 224
Query: 217 ELDDTAAFK 225
DD A F+
Sbjct: 225 NFDDNAEFR 233
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 48/249 (19%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGK 65
++EY SK+L+ ++ G+ +Q + + +E L++ +V+K +L G
Sbjct: 4 LQEYQSKKLMSDN-----GVKVQ----RFFVADTANEALEAAKRLNAKEIVLKAQILAGG 54
Query: 66 RGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVEPFVPH 113
RGK SGL V L D V + K +G + G K + +V +
Sbjct: 55 RGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVAEALDI 112
Query: 114 NQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPTEKHM- 158
++E YL+I+ DR G + S GG++IEE D ++ I + M
Sbjct: 113 SRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMA 172
Query: 159 -TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRG 216
L PL + + D I ++ +F +D + +E+NPF G+ D +
Sbjct: 173 ENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKI 224
Query: 217 ELDDTAAFK 225
DD A F+
Sbjct: 225 NFDDNAEFR 233
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 48/249 (19%)
Query: 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGK 65
++EY SK+L+ ++ G+ +Q + + +E L++ +V+K +L G
Sbjct: 3 LQEYQSKKLMSDN-----GVKVQ----RFFVADTANEALEAAKRLNAKEIVLKAQILAGG 53
Query: 66 RGK----SGL---VALNLDLAQVAEFVKGRLG-----TEVEMGGCKGPITTFIVEPFVPH 113
RGK SGL V L D V + K +G + G K + +V +
Sbjct: 54 RGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVK--VNKVMVAEALDI 111
Query: 114 NQEYYLSIVSDRL--GCTISFSECGGIEIEE------------NWDKVKTIFLPTEKHM- 158
++E YL+I+ DR G + S GG++IEE D ++ I + M
Sbjct: 112 SRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMA 171
Query: 159 -TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRG 216
L PL + + D I ++ +F +D + +E+NPF G+ D +
Sbjct: 172 ENLGFLGPL--------QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKI 223
Query: 217 ELDDTAAFK 225
DD A F+
Sbjct: 224 NFDDNAEFR 232
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 213 DMRGELDDTAAFKNFKKW-ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT-VLNPKG 270
D++G+ DTAA + K + A E + V+S+ + I + E + SL ++ + P G
Sbjct: 13 DVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANI--VKEAVAKSLLYSDITRPGG 70
Query: 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN--EEEVLQ 315
++T + YA + DL Y YA +G P+ +E VL
Sbjct: 71 XMYT-------TRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLN 110
>pdb|3UVE|A Chain A, Crystal Structure Of Carveol Dehydrogenase
((+)-Trans-Carveol Dehydrogenase) From Mycobacterium
Avium
pdb|3UVE|B Chain B, Crystal Structure Of Carveol Dehydrogenase
((+)-Trans-Carveol Dehydrogenase) From Mycobacterium
Avium
pdb|3UVE|C Chain C, Crystal Structure Of Carveol Dehydrogenase
((+)-Trans-Carveol Dehydrogenase) From Mycobacterium
Avium
pdb|3UVE|D Chain D, Crystal Structure Of Carveol Dehydrogenase
((+)-Trans-Carveol Dehydrogenase) From Mycobacterium
Avium
Length = 286
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 2 ARKKIREYDS-KRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPW-------LSSS 53
A +R+YD+ K + +++L LD+ + +A + D + T++E W L+
Sbjct: 81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGV 140
Query: 54 RLVVK---PDMLFGKRGKS 69
VK P M+ G RG S
Sbjct: 141 WKTVKAGVPHMIAGGRGGS 159
>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SWX|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SWX|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 265
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 23 AGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82
AGLDL +A++ + PW R + KP +L GK ++ L ++LA A
Sbjct: 68 AGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKP-LLVAVHGK--VLTLGIELALAA 124
Query: 83 EFV 85
+ V
Sbjct: 125 DIV 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,474,438
Number of Sequences: 62578
Number of extensions: 437061
Number of successful extensions: 898
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 17
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)