Query 019240
Match_columns 344
No_of_seqs 185 out of 1890
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02235 ATP citrate (pro-S)-l 100.0 1.6E-92 3.5E-97 694.6 32.8 334 1-338 1-343 (423)
2 COG0045 SucC Succinyl-CoA synt 100.0 1.1E-90 2.4E-95 666.4 30.3 309 4-337 1-322 (387)
3 PLN00124 succinyl-CoA ligase [ 100.0 1E-82 2.2E-87 631.9 31.5 311 2-337 26-358 (422)
4 PRK14046 malate--CoA ligase su 100.0 9.2E-77 2E-81 587.3 32.1 310 4-337 1-323 (392)
5 KOG1447 GTP-specific succinyl- 100.0 1.2E-73 2.7E-78 522.9 22.3 310 4-337 20-349 (412)
6 TIGR01016 sucCoAbeta succinyl- 100.0 1.2E-69 2.6E-74 536.7 31.8 310 4-337 1-323 (386)
7 KOG2799 Succinyl-CoA synthetas 100.0 6.6E-72 1.4E-76 527.3 11.5 310 4-337 23-353 (434)
8 PRK00696 sucC succinyl-CoA syn 100.0 7.8E-64 1.7E-68 495.5 32.0 308 4-335 1-321 (388)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 2.5E-49 5.4E-54 358.6 17.2 191 5-204 1-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 2.8E-36 6.2E-41 277.1 13.9 199 3-218 7-222 (222)
11 KOG1254 ATP-citrate lyase [Ene 99.8 1.7E-22 3.7E-27 198.2 1.7 274 47-321 74-395 (600)
12 COG1042 Acyl-CoA synthetase (N 99.2 2.7E-12 6E-17 133.1 2.5 122 3-150 468-591 (598)
13 PF00549 Ligase_CoA: CoA-ligas 99.1 8.4E-11 1.8E-15 102.4 5.5 60 275-336 1-85 (153)
14 PF01071 GARS_A: Phosphoribosy 98.9 4.4E-09 9.5E-14 95.0 9.6 99 10-127 5-104 (194)
15 COG0151 PurD Phosphoribosylami 98.7 7.1E-08 1.5E-12 95.3 9.2 98 11-127 107-204 (428)
16 TIGR00514 accC acetyl-CoA carb 98.6 2.3E-06 5E-11 86.7 18.7 109 7-133 115-225 (449)
17 PRK12815 carB carbamoyl phosph 98.6 5.2E-07 1.1E-11 100.4 14.7 103 9-133 130-232 (1068)
18 PF02786 CPSase_L_D2: Carbamoy 98.6 1.2E-06 2.6E-11 80.4 14.2 109 9-133 3-111 (211)
19 PRK01372 ddl D-alanine--D-alan 98.6 3.4E-06 7.4E-11 80.6 17.8 102 7-133 98-199 (304)
20 PLN02257 phosphoribosylamine-- 98.5 8.8E-07 1.9E-11 89.6 11.9 101 7-126 102-202 (434)
21 TIGR01161 purK phosphoribosyla 98.5 7.6E-06 1.6E-10 80.2 18.2 100 7-132 98-198 (352)
22 PRK09288 purT phosphoribosylgl 98.5 7.8E-06 1.7E-10 81.0 17.7 104 9-132 115-219 (395)
23 PRK07178 pyruvate carboxylase 98.5 4.5E-06 9.8E-11 85.2 16.4 110 7-132 114-223 (472)
24 PRK13789 phosphoribosylamine-- 98.5 6.9E-07 1.5E-11 90.1 10.2 101 7-126 108-208 (426)
25 PLN02735 carbamoyl-phosphate s 98.5 4E-06 8.6E-11 93.6 16.8 104 8-132 145-248 (1102)
26 PRK08462 biotin carboxylase; V 98.5 6.6E-06 1.4E-10 83.2 17.0 108 7-132 117-226 (445)
27 PRK00885 phosphoribosylamine-- 98.5 1.4E-06 3.1E-11 87.4 11.8 101 7-126 102-202 (420)
28 PRK13790 phosphoribosylamine-- 98.4 1.3E-06 2.8E-11 86.7 11.1 98 6-126 66-163 (379)
29 PRK08654 pyruvate carboxylase 98.4 1.4E-05 3E-10 82.3 18.9 111 7-133 115-225 (499)
30 PRK08591 acetyl-CoA carboxylas 98.4 1.5E-05 3.3E-10 80.6 18.5 108 7-132 115-224 (451)
31 PRK14569 D-alanyl-alanine synt 98.4 7.5E-06 1.6E-10 78.5 15.1 94 6-128 97-190 (296)
32 PRK05586 biotin carboxylase; V 98.4 2.2E-05 4.7E-10 79.6 19.2 109 7-133 115-225 (447)
33 TIGR00877 purD phosphoribosyla 98.4 1.7E-06 3.7E-11 86.6 10.9 100 7-126 104-204 (423)
34 PRK06019 phosphoribosylaminoim 98.4 2.1E-05 4.5E-10 77.9 18.1 99 8-132 101-200 (372)
35 TIGR02712 urea_carbox urea car 98.4 6.2E-06 1.3E-10 92.6 15.5 109 7-133 114-223 (1201)
36 PLN02948 phosphoribosylaminoim 98.4 2.4E-05 5.2E-10 81.9 18.6 102 7-132 121-223 (577)
37 PRK06524 biotin carboxylase-li 98.3 2.4E-05 5.2E-10 79.8 17.5 100 6-129 141-242 (493)
38 TIGR01142 purT phosphoribosylg 98.3 4.2E-05 9E-10 75.4 18.6 102 8-129 101-203 (380)
39 PF13535 ATP-grasp_4: ATP-gras 98.2 7.7E-06 1.7E-10 71.5 9.7 101 7-129 4-104 (184)
40 PRK08463 acetyl-CoA carboxylas 98.2 7.6E-05 1.6E-09 76.4 18.2 111 7-133 114-225 (478)
41 TIGR01369 CPSaseII_lrg carbamo 98.2 8.6E-06 1.9E-10 90.7 11.2 103 8-132 128-230 (1050)
42 PF02222 ATP-grasp: ATP-grasp 98.2 5.1E-05 1.1E-09 67.5 14.0 93 15-133 1-94 (172)
43 PLN02735 carbamoyl-phosphate s 98.2 6.1E-05 1.3E-09 84.3 17.7 102 8-131 703-804 (1102)
44 PRK12999 pyruvate carboxylase; 98.2 4.6E-05 9.9E-10 85.4 16.7 109 7-133 119-229 (1146)
45 TIGR01235 pyruv_carbox pyruvat 98.2 4.6E-05 1E-09 85.2 16.6 110 7-132 115-224 (1143)
46 TIGR01369 CPSaseII_lrg carbamo 98.2 4.1E-05 8.9E-10 85.4 15.7 96 9-126 671-766 (1050)
47 PRK14573 bifunctional D-alanyl 98.1 9.9E-05 2.1E-09 80.2 18.1 100 6-127 567-671 (809)
48 PRK06111 acetyl-CoA carboxylas 98.1 2E-05 4.4E-10 79.5 11.5 109 6-132 114-224 (450)
49 PRK05294 carB carbamoyl phosph 98.1 1.6E-05 3.5E-10 88.7 11.4 103 8-132 129-231 (1066)
50 TIGR01205 D_ala_D_alaTIGR D-al 98.1 0.0004 8.6E-09 66.6 19.2 97 7-126 105-205 (315)
51 COG1042 Acyl-CoA synthetase (N 98.1 6.1E-07 1.3E-11 93.6 -0.3 298 2-332 20-381 (598)
52 PRK12833 acetyl-CoA carboxylas 98.1 1.6E-05 3.6E-10 81.0 10.0 103 7-127 118-222 (467)
53 TIGR02068 cya_phycin_syn cyano 98.0 2.9E-05 6.2E-10 84.9 9.8 91 7-122 213-304 (864)
54 PRK14016 cyanophycin synthetas 98.0 3E-05 6.5E-10 83.3 9.5 91 7-122 214-305 (727)
55 KOG0237 Glycinamide ribonucleo 98.0 3E-05 6.5E-10 79.3 8.8 100 9-126 110-209 (788)
56 PRK06395 phosphoribosylamine-- 97.9 5.7E-05 1.2E-09 76.5 10.8 96 7-127 105-205 (435)
57 PF07478 Dala_Dala_lig_C: D-al 97.9 0.00011 2.5E-09 66.9 11.4 90 14-126 1-92 (203)
58 PRK12815 carB carbamoyl phosph 97.9 0.00025 5.4E-09 79.3 16.1 93 9-126 672-764 (1068)
59 PRK01966 ddl D-alanyl-alanine 97.9 8.7E-05 1.9E-09 72.4 10.9 96 6-124 122-219 (333)
60 PRK07206 hypothetical protein; 97.9 8.8E-05 1.9E-09 74.0 11.0 99 7-123 108-209 (416)
61 COG0439 AccC Biotin carboxylas 97.9 0.00012 2.6E-09 74.2 11.7 111 7-133 115-225 (449)
62 COG0458 CarB Carbamoylphosphat 97.9 7.8E-05 1.7E-09 73.8 10.0 105 9-137 118-223 (400)
63 PRK12767 carbamoyl phosphate s 97.9 0.00012 2.5E-09 70.6 11.2 92 9-129 113-206 (326)
64 PRK14572 D-alanyl-alanine synt 97.9 0.00012 2.5E-09 72.0 11.1 96 6-124 129-228 (347)
65 PRK05784 phosphoribosylamine-- 97.8 0.00012 2.6E-09 75.2 11.3 103 6-126 108-219 (486)
66 PRK10446 ribosomal protein S6 97.8 0.0001 2.2E-09 70.8 10.2 94 7-123 99-194 (300)
67 TIGR01435 glu_cys_lig_rel glut 97.8 6.5E-05 1.4E-09 80.3 9.5 95 8-126 476-573 (737)
68 PRK02186 argininosuccinate lya 97.8 0.00013 2.7E-09 80.2 11.4 97 7-127 107-203 (887)
69 PRK05294 carB carbamoyl phosph 97.8 0.00014 3E-09 81.4 11.5 96 9-126 671-766 (1066)
70 TIGR02717 AcCoA-syn-alpha acet 97.8 5.8E-05 1.3E-09 76.7 7.8 63 269-333 295-378 (447)
71 PRK02471 bifunctional glutamat 97.8 0.00012 2.6E-09 78.8 10.0 92 7-122 488-582 (752)
72 PRK14568 vanB D-alanine--D-lac 97.7 0.00027 5.9E-09 69.2 11.4 93 7-126 132-224 (343)
73 PRK13278 purP 5-formaminoimida 97.7 0.00033 7.1E-09 69.3 11.3 96 9-133 125-221 (358)
74 PRK14570 D-alanyl-alanine synt 97.7 0.00024 5.3E-09 70.3 10.5 97 6-125 128-229 (364)
75 PF08443 RimK: RimK-like ATP-g 97.6 0.00012 2.5E-09 65.8 6.3 90 10-122 6-97 (190)
76 TIGR02144 LysX_arch Lysine bio 97.5 0.0005 1.1E-08 64.7 9.8 95 8-122 88-183 (280)
77 COG0026 PurK Phosphoribosylami 97.5 0.0041 8.9E-08 61.2 16.0 97 11-132 103-200 (375)
78 PRK14571 D-alanyl-alanine synt 97.5 0.00092 2E-08 64.0 11.0 91 7-127 95-185 (299)
79 COG0027 PurT Formate-dependent 97.5 0.00017 3.7E-09 69.1 5.4 81 24-119 126-206 (394)
80 TIGR00768 rimK_fam alpha-L-glu 97.4 0.0011 2.4E-08 61.9 10.8 87 7-114 88-174 (277)
81 TIGR03103 trio_acet_GNAT GNAT- 97.3 0.0011 2.3E-08 69.2 9.2 91 7-123 297-388 (547)
82 PRK13277 5-formaminoimidazole- 97.2 0.0038 8.2E-08 61.6 11.3 94 13-133 132-228 (366)
83 COG0189 RimK Glutathione synth 97.1 0.0015 3.3E-08 63.6 7.4 96 11-128 123-219 (318)
84 COG4770 Acetyl/propionyl-CoA c 96.9 0.042 9.2E-07 56.7 15.8 160 8-198 116-275 (645)
85 KOG0238 3-Methylcrotonyl-CoA c 96.6 0.062 1.3E-06 54.9 14.2 110 8-133 112-221 (670)
86 PRK06849 hypothetical protein; 96.2 0.032 7E-07 55.4 10.0 96 7-130 116-211 (389)
87 COG1181 DdlA D-alanine-D-alani 95.4 0.29 6.4E-06 47.7 12.8 97 7-126 103-201 (317)
88 COG1038 PycA Pyruvate carboxyl 95.1 0.33 7.3E-06 52.2 13.0 163 10-204 124-300 (1149)
89 PLN02941 inositol-tetrakisphos 94.8 0.16 3.4E-06 49.8 9.1 77 11-115 111-197 (328)
90 TIGR02291 rimK_rel_E_lig alpha 94.7 0.9 2E-05 44.3 14.1 54 9-75 39-94 (317)
91 PF15632 ATPgrasp_Ter: ATP-gra 93.8 0.29 6.2E-06 48.0 8.5 103 9-130 109-223 (329)
92 COG1759 5-formaminoimidazole-4 93.1 0.31 6.7E-06 47.3 7.1 100 6-127 118-217 (361)
93 KOG0369 Pyruvate carboxylase [ 93.1 3.1 6.8E-05 44.3 14.8 162 11-204 151-326 (1176)
94 PRK12458 glutathione synthetas 91.0 0.82 1.8E-05 44.9 7.6 70 25-113 139-210 (338)
95 PF02655 ATP-grasp_3: ATP-gras 90.7 0.44 9.4E-06 41.5 4.9 83 8-128 4-86 (161)
96 COG3919 Predicted ATP-grasp en 90.7 0.76 1.7E-05 44.4 6.8 94 24-133 126-223 (415)
97 KOG0368 Acetyl-CoA carboxylase 84.9 9.2 0.0002 44.3 11.5 81 40-133 228-308 (2196)
98 TIGR01380 glut_syn glutathione 78.9 6.7 0.00014 37.9 7.1 75 26-119 133-210 (312)
99 PF13607 Succ_CoA_lig: Succiny 76.7 5.9 0.00013 33.9 5.4 60 270-332 2-61 (138)
100 PLN00125 Succinyl-CoA ligase [ 73.5 9.7 0.00021 36.9 6.5 61 269-332 150-212 (300)
101 TIGR01019 sucCoAalpha succinyl 71.8 11 0.00024 36.3 6.4 63 269-333 143-206 (286)
102 PRK05246 glutathione synthetas 71.5 13 0.00028 35.9 7.0 69 26-113 134-203 (316)
103 PTZ00187 succinyl-CoA syntheta 70.6 9.8 0.00021 37.2 5.8 62 269-332 169-231 (317)
104 KOG0370 Multifunctional pyrimi 69.6 1.4 3.1E-05 48.3 -0.1 86 31-133 515-600 (1435)
105 PRK05678 succinyl-CoA syntheta 63.1 20 0.00044 34.5 6.4 62 269-332 145-207 (291)
106 PRK06091 membrane protein FdrA 62.1 18 0.00038 38.1 6.0 63 269-333 193-260 (555)
107 TIGR02717 AcCoA-syn-alpha acet 53.0 28 0.00062 35.4 5.8 62 269-333 150-211 (447)
108 TIGR02049 gshA_ferroox glutama 52.5 33 0.00071 34.3 5.8 60 53-118 257-317 (403)
109 PLN02522 ATP citrate (pro-S)-l 51.3 32 0.00069 36.7 5.9 62 269-332 167-229 (608)
110 PF10941 DUF2620: Protein of u 49.2 26 0.00056 29.2 3.8 44 271-317 48-91 (117)
111 PF02955 GSH-S_ATP: Prokaryoti 45.5 28 0.00061 30.9 3.9 71 22-112 8-79 (173)
112 PF05770 Ins134_P3_kin: Inosit 34.9 74 0.0016 31.0 5.2 70 24-115 112-183 (307)
113 PF14403 CP_ATPgrasp_2: Circul 34.5 1.7E+02 0.0037 30.1 7.9 51 53-119 339-391 (445)
114 PF08886 GshA: Glutamate-cyste 34.1 39 0.00084 33.9 3.1 58 55-118 263-320 (404)
115 COG0074 SucD Succinyl-CoA synt 32.8 83 0.0018 30.4 5.0 71 260-332 134-207 (293)
116 PF14397 ATPgrasp_ST: Sugar-tr 31.1 1E+02 0.0022 29.4 5.5 56 9-75 28-92 (285)
117 PF11379 DUF3182: Protein of u 28.5 1.2E+02 0.0025 30.1 5.3 71 40-121 123-194 (355)
118 KOG1255 Succinyl-CoA synthetas 27.7 44 0.00095 31.6 2.2 31 293-332 208-238 (329)
119 COG2012 RPB5 DNA-directed RNA 26.0 92 0.002 24.2 3.3 16 6-26 21-36 (80)
120 KOG3019 Predicted nucleoside-d 23.2 1.2E+02 0.0026 28.7 4.2 57 271-331 178-238 (315)
121 KOG0370 Multifunctional pyrimi 20.5 87 0.0019 35.3 3.1 82 13-119 1039-1123(1435)
No 1
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.6e-92 Score=694.63 Aligned_cols=334 Identities=83% Similarity=1.273 Sum_probs=310.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEe-ecCCHHhHHhhccc---cCCCcEEEEeccccCcccCcCeEEEeC
Q 019240 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVT-ESTDFSELTNKEPW---LSSSRLVVKPDMLFGKRGKSGLVALNL 76 (344)
Q Consensus 1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~-~~~~~~ea~~aa~~---lg~~pvVvKaqv~~g~Rgk~GgV~l~~ 76 (344)
||+++|||||||+||++||++++|||+| .+.++ +++ +|+.+++++ |++.++|||||+++|||||+|||+++.
T Consensus 1 ~~~~~l~EyqaK~ll~~~~~~~~gipvP--~~~v~~~~~--ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~ 76 (423)
T PLN02235 1 MARKKIREYDSKRLLKEHLKRLAGIDLP--IRSAQVTES--TDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL 76 (423)
T ss_pred CCcccccHHHHHHHHHHhhcccCCCCCC--CCeeccCCH--HHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence 9999999999999999999999999999 88777 554 477666655 876578999999999999999999999
Q ss_pred CHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcC
Q 019240 77 DLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEK 156 (344)
Q Consensus 77 s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~ 156 (344)
|++|+++++++|++++++|+++.|++++|||||++++.+|||+|++.||..+.+++|.+||||||+.|+++.++++||..
T Consensus 77 s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~ 156 (423)
T PLN02235 77 DLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA 156 (423)
T ss_pred CHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC
Confidence 99999999999999999877777799999999999999999999999999878999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCceEEEeeeeeeccchhhhcccccccccCC
Q 019240 157 HMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 236 (344)
Q Consensus 157 ~l~~~~a~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v~~g~~~alDaki~iDd~A~fR~~~~~~~~~~~ 236 (344)
+++++++++++.+++....+++.+++.+||++|.++|++++|||||++.||+++|+|||+.+||||.|||++.|..++||
T Consensus 157 gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~ 236 (423)
T PLN02235 157 PLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFP 236 (423)
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccc
Confidence 99999999999999888889999999999999999999999999999988899999999999999999999879899999
Q ss_pred CCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHH
Q 019240 237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY 316 (344)
Q Consensus 237 ~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a 316 (344)
.||+|+.+|+|.++.++|+++...+++++|+||||||||||||||+|+|||+|+++|.+|+||||||+||+||.++|+++
T Consensus 237 ~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a 316 (423)
T PLN02235 237 LPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY 316 (423)
T ss_pred ccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHH
Confidence 99999999999988888877766665555999999999999999999999999994433999999999999999999999
Q ss_pred HHHHh----cccCccEE-EEeecceee
Q 019240 317 ARVVI----DVRDFTNF-GLFFGTQAL 338 (344)
Q Consensus 317 ~~~il----~d~~v~~~-~~~~~~~~~ 338 (344)
+++|| +||+|+++ ||||||++-
T Consensus 317 ~~iil~~~~~~~~vk~ilvnIfGGI~r 343 (423)
T PLN02235 317 ARVVIDCATANPDGRKRALLIGGGIAN 343 (423)
T ss_pred HHHHHhhhhcCCCCcEEEEEEeccccc
Confidence 99999 89999975 999999873
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-90 Score=666.37 Aligned_cols=309 Identities=26% Similarity=0.379 Sum_probs=282.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
|+|||||+|+||++| |||+| ++.+++++ +|+.++++++|+.|+|||+|+++|||||+|||+++.|++|+.+
T Consensus 1 M~lhEYqaKelf~~~-----GiPvp--~g~v~~s~--eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKY-----GIPVP--PGYVATSP--EEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHc-----CCCCC--CceeeeCH--HHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH
Confidence 789999999999999 99998 89999886 5999999999878999999999999999999999999999999
Q ss_pred HHHHHhcccchhcCCCc-ceeeEEEEeecCC-CceEEEEEEEcCC--CceEEeeccCccccccc----ccceeEEEcCCc
Q 019240 84 FVKGRLGTEVEMGGCKG-PITTFIVEPFVPH-NQEYYLSIVSDRL--GCTISFSECGGIEIEEN----WDKVKTIFLPTE 155 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~-~v~~vLVee~~~~-~~Elylgi~~Dr~--~p~il~s~~GGv~iE~~----~d~~~~~~l~~~ 155 (344)
++++|+|++.. +++.+ .++.+|||+++++ .+|||+|+.+||+ .|++|+|.+||||||+. |+++.+.++||.
T Consensus 72 ~a~~~lg~~~q-~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~ 150 (387)
T COG0045 72 AAEEILGKNYQ-TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPL 150 (387)
T ss_pred HHHHHhCcccc-cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCc
Confidence 99999997743 34455 8999999999995 4599999999998 48899999999999995 678999999999
Q ss_pred CCCCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-c-CCceEEEeeeeeeccchhhhcccccc
Q 019240 156 KHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-V-NGEPYPLDMRGELDDTAAFKNFKKWA 231 (344)
Q Consensus 156 ~~l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~-~g~~~alDaki~iDd~A~fR~~~~~~ 231 (344)
.+++++++|+++. |++....+++.+++.+||++|.++|++++|||||++ . +|+++|+|||+++||||+||||+ +.
T Consensus 151 ~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~-~~ 229 (387)
T COG0045 151 TGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPD-LA 229 (387)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcc-hh
Confidence 9999999999998 566678899999999999999999999999999999 6 44899999999999999999998 44
Q ss_pred cccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHH
Q 019240 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (344)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~ 311 (344)
.++.. .+++|. |..+++++|+||+||||||||+|||||+|+|||+|++ +||+||||||+||+||.|
T Consensus 230 ~~~d~----~~ed~~--------e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~--~Gg~PANFLDvGGgA~~e 295 (387)
T COG0045 230 ELRDE----SEEDPR--------EAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKL--YGGKPANFLDVGGGATAE 295 (387)
T ss_pred hhhcc----cccChh--------HHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHH--cCCCCcceeecCCCCCHH
Confidence 55443 567777 5567899999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHhcccCccE-EEEeeccee
Q 019240 312 EVLQYARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 312 ~v~~a~~~il~d~~v~~-~~~~~~~~~ 337 (344)
+|++||++|++||+|++ |||||||+-
T Consensus 296 ~v~~a~~~il~d~~vk~IfVNIfGGI~ 322 (387)
T COG0045 296 RVKEAFKLILSDPNVKAIFVNIFGGIT 322 (387)
T ss_pred HHHHHHHHHhcCCCccEEEEEEccCcC
Confidence 99999999999999996 699999963
No 3
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=1e-82 Score=631.85 Aligned_cols=311 Identities=22% Similarity=0.323 Sum_probs=281.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccC--CCcEEEEeccccCcccCc-------CeE
Q 019240 2 ARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS--SSRLVVKPDMLFGKRGKS-------GLV 72 (344)
Q Consensus 2 ~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg--~~pvVvKaqv~~g~Rgk~-------GgV 72 (344)
-+|+|+|||+|+||++| |||+| ++.+++++ +||.+++++++ ++|+|+|+|+++|||||+ |||
T Consensus 26 ~~m~l~EyqaK~LL~~~-----GIpvp--~~~va~t~--eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV 96 (422)
T PLN00124 26 RRLNIHEYQGAELMSKY-----GVNVP--KGAAASSL--DEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGV 96 (422)
T ss_pred cccCCCHHHHHHHHHHc-----CCCCC--CceeeCCH--HHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeE
Confidence 36899999999999999 99998 88888775 59999999985 589999999999999976 999
Q ss_pred EEeCCHHHHHHHHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC--CceEEeeccCcccccc----c
Q 019240 73 ALNLDLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE----N 143 (344)
Q Consensus 73 ~l~~s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~--~p~il~s~~GGv~iE~----~ 143 (344)
+++.+ +|+.+++++|+++++.+ +++.+ .+++|||+|++.+.+|+|+|+++||. +|++++|++|||+||+ .
T Consensus 97 ~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~ 175 (422)
T PLN00124 97 HIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKF 175 (422)
T ss_pred EECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhC
Confidence 99966 99999999999998755 44545 79999999888899999999999995 7999889999999994 6
Q ss_pred ccceeEEEcCCcCCCCHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeecc
Q 019240 144 WDKVKTIFLPTEKHMTLDACAPLIATLP--LEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDD 220 (344)
Q Consensus 144 ~d~~~~~~l~~~~~l~~~~a~~ll~g~~--~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd 220 (344)
||.+.+++++|..+++++++++++.+++ +.+++++++++.+||++|.++|++++|||||++ ++|+++|+|||+.+||
T Consensus 176 pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~Dd 255 (422)
T PLN00124 176 PEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDD 255 (422)
T ss_pred chheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCC
Confidence 7889999999999999999999999765 578999999999999999999999999999999 8888999999999999
Q ss_pred chhhhcccccccccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcce
Q 019240 221 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300 (344)
Q Consensus 221 ~A~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pAN 300 (344)
||.|||+++| .++.+ ++.+|. |.++.+++++||+||||||||||||||+|+|||+|++ +||+|||
T Consensus 256 nA~~R~~~~~-~~~~~----~~~~~~--------E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~--~Gg~pAN 320 (422)
T PLN00124 256 NAAFRQKEIF-ALRDT----SQEDPR--------EVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKL--HGGSPAN 320 (422)
T ss_pred chhhcChhhh-hccCc----ccCChh--------HHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHH--cCCCcce
Confidence 9999999866 44443 455666 4567888999999999999999999999999999999 8999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcccCccE-EEEeeccee
Q 019240 301 YAEYSGAPNEEEVLQYARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 301 FlD~GG~a~~~~v~~a~~~il~d~~v~~-~~~~~~~~~ 337 (344)
|||+||+||.++|++||++|++||+|+. |||||||+.
T Consensus 321 FlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~ 358 (422)
T PLN00124 321 FLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIM 358 (422)
T ss_pred eeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCcc
Confidence 9999999999999999999999999997 599999985
No 4
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=9.2e-77 Score=587.29 Aligned_cols=310 Identities=24% Similarity=0.347 Sum_probs=281.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
|+|+|||+|+||++| |||+| ++.+++++ +|+.++++++|..|||||+|++++||||+|||+++.|++|+++
T Consensus 1 m~l~E~eak~lL~~y-----GIpvp--~~~~~~~~--~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~ 71 (392)
T PRK14046 1 MDIHEYQAKELLASF-----GVAVP--RGALAYSP--EQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD 71 (392)
T ss_pred CCCcHHHHHHHHHHc-----CCCCC--CceEECCH--HHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH
Confidence 799999999999999 99998 88888775 5999999999844679999999999999999999999999999
Q ss_pred HHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC-CceEEe-eccCccccccc----ccceeEEEcCC
Q 019240 84 FVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-GCTISF-SECGGIEIEEN----WDKVKTIFLPT 154 (344)
Q Consensus 84 ~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il~-s~~GGv~iE~~----~d~~~~~~l~~ 154 (344)
++++|+++.+.+ ++|.+ ++++||||+|+++++|+|+|+++||. +|++++ |++||++||++ |+++.+++++|
T Consensus 72 a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~ 151 (392)
T PRK14046 72 AAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEP 151 (392)
T ss_pred HHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCC
Confidence 999999997644 45555 89999999999999999999999999 676555 68999999985 78999999999
Q ss_pred cCCCCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhcccccc
Q 019240 155 EKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (344)
Q Consensus 155 ~~~l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~ 231 (344)
..+++++++++++. |++....+++.+++.+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.|||+++|
T Consensus 152 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~- 230 (392)
T PRK14046 152 AVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA- 230 (392)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHH-
Confidence 99999999999987 456688999999999999999999999999999999 89999999999999999999999844
Q ss_pred cccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHH
Q 019240 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (344)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~ 311 (344)
.++++ ++.+|+ |.++++++|+||+||||||||+|||||+|+|||+|+. +||+|+||+|+||+++++
T Consensus 231 ~~~~~----~~~~~~--------e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~--~gg~paNPlDlgg~a~~e 296 (392)
T PRK14046 231 EMRDP----SQEDPR--------EAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKL--AGGEPANFLDVGGGASPE 296 (392)
T ss_pred hhcCc----ccCChh--------HHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHh--cCCCCcCCEEecCCCCHH
Confidence 56555 456777 4456789999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHhcccCccEE-EEeeccee
Q 019240 312 EVLQYARVVIDVRDFTNF-GLFFGTQA 337 (344)
Q Consensus 312 ~v~~a~~~il~d~~v~~~-~~~~~~~~ 337 (344)
.+.++++++++||+|+++ +|+||++.
T Consensus 297 ~~~~aL~~ll~Dp~VdaVlv~i~ggi~ 323 (392)
T PRK14046 297 RVAKAFRLVLSDRNVKAILVNIFAGIN 323 (392)
T ss_pred HHHHHHHHHHcCCCCCEEEEEcCCCCC
Confidence 999999999999999985 89997643
No 5
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-73 Score=522.92 Aligned_cols=310 Identities=21% Similarity=0.320 Sum_probs=282.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCc-------CeEEEeC
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKS-------GLVALNL 76 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~-------GgV~l~~ 76 (344)
.+|.|||+|+||.+| |+.+. ...++++. .|+.++++.++...+|+|+|+++|||||. |||.+.+
T Consensus 20 LNLqEfQSK~~l~k~-----Gv~vQ--~F~Va~n~--kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk 90 (412)
T KOG1447|consen 20 LNLQEFQSKEILSKN-----GVRVQ--RFFVADNA--KEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITK 90 (412)
T ss_pred ccHHHhhhHHHHHhc-----CeeEE--EEEEecCc--HHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEec
Confidence 468999999999999 98776 77777664 48888889998788999999999999995 9999999
Q ss_pred CHHHHHHHHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC--CceEEeeccCcccccc----cccce
Q 019240 77 DLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE----NWDKV 147 (344)
Q Consensus 77 s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~--~p~il~s~~GGv~iE~----~~d~~ 147 (344)
++.++-+.+++|+|..+.| +...+ +|+.|.|.+.+++.+|-|++|..||+ ||+++.|+.||||||. .|+.+
T Consensus 91 ~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~I 170 (412)
T KOG1447|consen 91 DKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELI 170 (412)
T ss_pred CHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhh
Confidence 9999999999999999887 22334 89999999999999999999999998 7999999999999997 58899
Q ss_pred eEEEcCCcCCCCHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhh
Q 019240 148 KTIFLPTEKHMTLDACAPLIATLP--LEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAF 224 (344)
Q Consensus 148 ~~~~l~~~~~l~~~~a~~ll~g~~--~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~f 224 (344)
++.|+|..+++.+.++.++...+. .....+.++-|.+||.+|...|++.+|||||.. .+|+++|+|||+++||||.|
T Consensus 171 fk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~f 250 (412)
T KOG1447|consen 171 FKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEF 250 (412)
T ss_pred ccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhh
Confidence 999999999999999999998544 466788899999999999999999999999999 89999999999999999999
Q ss_pred hcccccccccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeec
Q 019240 225 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 304 (344)
Q Consensus 225 R~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~ 304 (344)
||+++| .|... .+.+|+ |.++++++|+||-+||||+|+||||||+|+|||+|++ +||+||||||+
T Consensus 251 RQKdIF-amd~~----eE~dPr--------EveAakynLnYigmDGNIaClVNGAGLAMATmDiIkL--nGGePANFLDv 315 (412)
T KOG1447|consen 251 RQKDIF-AMDDK----EENDPR--------EVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKL--NGGEPANFLDV 315 (412)
T ss_pred hhccee-ecccc----cccCch--------hhhhhhcCcceeeccCceEEEEccchhhhheeeeEEe--cCCCCcceeec
Confidence 999987 44433 566777 6678899999999999999999999999999999999 89999999999
Q ss_pred CCCCCHHHHHHHHHHHhcccCccEE-EEeeccee
Q 019240 305 SGAPNEEEVLQYARVVIDVRDFTNF-GLFFGTQA 337 (344)
Q Consensus 305 GG~a~~~~v~~a~~~il~d~~v~~~-~~~~~~~~ 337 (344)
||+.++++|++||++|.+||+|+++ ||||||+-
T Consensus 316 GGgV~EdqV~~Af~ilTaDPkVk~iLvNiFGGIV 349 (412)
T KOG1447|consen 316 GGGVKEDQVYQAFKILTADPKVKAILVNIFGGIV 349 (412)
T ss_pred cCcccHHHHHHHhhhhccCCceeEEEEehhccee
Confidence 9999999999999999999999986 99999973
No 6
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=1.2e-69 Score=536.68 Aligned_cols=310 Identities=24% Similarity=0.348 Sum_probs=276.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
|+|+|||+|++|++| |||+| ++.++++ .+|+.++++++|.+|+|||+|+++||||+.|||+++.|++|+.+
T Consensus 1 m~L~E~~aK~ll~~~-----GIpvp--~~~~~~~--~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKY-----GIPVP--RGYVATS--VEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHc-----CCCCC--CceeeCC--HHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 789999999999999 99998 8888765 46888888899647999999999999999999999999999999
Q ss_pred HHHHHhcccchhc--C-CCcceeeEEEEeecCCCceEEEEEEEcCC--CceEEeeccCccccccc----ccceeEEEcCC
Q 019240 84 FVKGRLGTEVEMG--G-CKGPITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEEN----WDKVKTIFLPT 154 (344)
Q Consensus 84 ~a~~~l~~~~~~~--g-~~~~v~~vLVee~~~~~~Elylgi~~Dr~--~p~il~s~~GGv~iE~~----~d~~~~~~l~~ 154 (344)
++++++++.+.+. + +...+++||||+|+++++|+|+|++.||. +|+|+||.+||++||++ |+++.++.++|
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p 151 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP 151 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence 9999998766542 2 23478899999999999999999999995 69999999999999986 45677788899
Q ss_pred cCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhcccccc
Q 019240 155 EKHMTLDACAPLIAT--LPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (344)
Q Consensus 155 ~~~l~~~~a~~ll~g--~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~ 231 (344)
..+++.++++.+... ++..+.+++.+++.+||++|.++|++++|||||++ .+|+++|+|||+++||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~-~~ 230 (386)
T TIGR01016 152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPD-LE 230 (386)
T ss_pred CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHH-HH
Confidence 999999999999874 55789999999999999999999999999999999 787899999999999999999998 44
Q ss_pred cccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHH
Q 019240 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (344)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~ 311 (344)
.++.+ ++.++. |.++++++|+||+|+||||||+||||++|+|||+|+. +|++|+||+|+||+++.+
T Consensus 231 ~~~~~----~~~~~~--------e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~--~g~~~aNplDlgg~a~~~ 296 (386)
T TIGR01016 231 EMRDY----SQEDPR--------EVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKL--YGGEPANFLDVGGGASAE 296 (386)
T ss_pred HhhcC----CcCChh--------hhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHH--cCCCCCCcEEecCCCCHH
Confidence 44433 445555 5567889999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHhcccCccEE-EEeeccee
Q 019240 312 EVLQYARVVIDVRDFTNF-GLFFGTQA 337 (344)
Q Consensus 312 ~v~~a~~~il~d~~v~~~-~~~~~~~~ 337 (344)
.+.++++++++||+|+++ +|+||++.
T Consensus 297 ~~~~al~~l~~dp~vd~ilv~i~gg~~ 323 (386)
T TIGR01016 297 RVREALKLVLSDKSVKVVFINIFGGIT 323 (386)
T ss_pred HHHHHHHHHHcCCCCCEEEEECCCCCC
Confidence 999999999999999985 89998753
No 7
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6.6e-72 Score=527.35 Aligned_cols=310 Identities=23% Similarity=0.303 Sum_probs=287.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCc-------CeEEEeC
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKS-------GLVALNL 76 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~-------GgV~l~~ 76 (344)
..+|||.+.+||++| ||.+| .++++.++ |||.+++++||+..+|||+|+++|||||. |||++..
T Consensus 23 L~~hey~~~~ll~~~-----Gv~vp--~g~vA~sp--eEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf 93 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKY-----GINVP--LGYVAKSP--EEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVF 93 (434)
T ss_pred hhHHHHHHHHHHHHc-----CCCCC--CCcccCCH--HHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEe
Confidence 458999999999999 99999 99999886 59999999999899999999999999996 9999999
Q ss_pred CHHHHHHHHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC--CceEEeeccCcccccc----cccce
Q 019240 77 DLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE----NWDKV 147 (344)
Q Consensus 77 s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~--~p~il~s~~GGv~iE~----~~d~~ 147 (344)
+|+|+++.+.+|+|+.+.| +|+.+ .++.|+|++......|+|++++.||. +|+++.|..||+.||+ .||.+
T Consensus 94 ~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai 173 (434)
T KOG2799|consen 94 SPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAI 173 (434)
T ss_pred ChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccch
Confidence 9999999999999999988 78888 78999999999999999999999997 7999999999999998 48899
Q ss_pred eEEEcCCcCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCC-ceEEEeeeeeeccchh
Q 019240 148 KTIFLPTEKHMTLDACAPLIATL--PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNG-EPYPLDMRGELDDTAA 223 (344)
Q Consensus 148 ~~~~l~~~~~l~~~~a~~ll~g~--~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g-~~~alDaki~iDd~A~ 223 (344)
.+.|++...||++..+..+...+ .+..++.+++.+.+||++|.+.|++.+|||||+. +++ .++|.|||+.+||||.
T Consensus 174 ~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~ 253 (434)
T KOG2799|consen 174 IKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAA 253 (434)
T ss_pred hcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHH
Confidence 99999999999999999998854 5688999999999999999999999999999999 655 8999999999999999
Q ss_pred hhcccccccccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeee
Q 019240 224 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (344)
Q Consensus 224 fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD 303 (344)
|||..+| .+++ ..|++|+ |.+++++++||+.||||||||||||||+|+|||+|++ +||.||||||
T Consensus 254 fRq~~iF-~~rd----~~QEd~r--------e~~aak~~ln~igldG~igC~vngaglamaTmdiikl--hgg~panfld 318 (434)
T KOG2799|consen 254 FRQKKIF-LLRD----LSQEDPR--------EVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKL--HGGTPANFLD 318 (434)
T ss_pred HHhhhhh-hccc----hhhcCch--------hhhHHHhccceeccCCccceeeccchhhhhheeeeee--cCCCCcceee
Confidence 9999754 3443 3678887 6688999999999999999999999999999999999 8999999999
Q ss_pred cCCCCCHHHHHHHHHHHhcccCccE-EEEeeccee
Q 019240 304 YSGAPNEEEVLQYARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 304 ~GG~a~~~~v~~a~~~il~d~~v~~-~~~~~~~~~ 337 (344)
+||+||.|++.++|++|++||+|.+ +|||||++-
T Consensus 319 VGg~Atve~v~eaf~litsd~kv~ailvnifGgi~ 353 (434)
T KOG2799|consen 319 VGGGATVEQVREAFSLITSDKKVMAILVNIFGGIM 353 (434)
T ss_pred eCCCCcHHHHHHHHHHHhcChhHHHHHHHHhcCee
Confidence 9999999999999999999999997 599999974
No 8
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=7.8e-64 Score=495.50 Aligned_cols=308 Identities=26% Similarity=0.383 Sum_probs=272.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
|+|+||++|++|++| |||+| ++.++++. +|+.+++.+++++|||||+|++++||||+|||+++.|++|+.+
T Consensus 1 m~l~e~~ak~lL~~~-----gIpvp--~~~~~~~~--~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 1 MNLHEYQAKELFAKY-----GVPVP--RGIVATTP--EEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE 71 (388)
T ss_pred CCCCHHHHHHHHHHc-----CCCCC--CCeeeCCH--HHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH
Confidence 789999999999999 99998 88888764 6999999999338999999999999999999999999999999
Q ss_pred HHHHHhcccchh--cCCC-cceeeEEEEeecCCCceEEEEEEEcCC-CceEE-eeccCccccccccc----ceeEEEcCC
Q 019240 84 FVKGRLGTEVEM--GGCK-GPITTFIVEPFVPHNQEYYLSIVSDRL-GCTIS-FSECGGIEIEENWD----KVKTIFLPT 154 (344)
Q Consensus 84 ~a~~~l~~~~~~--~g~~-~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il-~s~~GGv~iE~~~d----~~~~~~l~~ 154 (344)
++++|+++.+.+ +++. ..+++||||||++++.|+|+|+++||. +|+++ +|++||+++|.++| ++.++.++|
T Consensus 72 a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p 151 (388)
T PRK00696 72 FAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDP 151 (388)
T ss_pred HHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCC
Confidence 999999875422 2223 378899999999999999999999999 78764 77899999999877 767788899
Q ss_pred cCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhcccccc
Q 019240 155 EKHMTLDACAPLIAT--LPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (344)
Q Consensus 155 ~~~l~~~~a~~ll~g--~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~ 231 (344)
..++++.++++|+.. +++.+++++++++.+||++|.+++++++|||||++ ++|+++|+|||+.+||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~-~~ 230 (388)
T PRK00696 152 LTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPD-LA 230 (388)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHh-HH
Confidence 888999999999875 56799999999999999999999999999999999 777799999999999999999997 65
Q ss_pred cccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHH
Q 019240 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (344)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~ 311 (344)
.++.. .+.++. |..+..++++||+|+||||+|+||||++|+|+|++.. +|++|+||+|+||.++.+
T Consensus 231 ~~~~~----~~~~~~--------e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~--~g~~~~NPvDl~g~~~~e 296 (388)
T PRK00696 231 ELRDL----SEEDPL--------EAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKL--YGGEPANFLDVGGGATAE 296 (388)
T ss_pred hhcCC----CcCChh--------hhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHH--cCCCcCCeEEecCCCCHH
Confidence 55433 223333 5566788999999999999999999999999999999 789999999999999999
Q ss_pred HHHHHHHHHhcccCccEE-EEeecc
Q 019240 312 EVLQYARVVIDVRDFTNF-GLFFGT 335 (344)
Q Consensus 312 ~v~~a~~~il~d~~v~~~-~~~~~~ 335 (344)
.+.++++++++||+|+++ +|+||+
T Consensus 297 ~~~~aL~~l~~d~~vd~vlv~~~~~ 321 (388)
T PRK00696 297 RVAEAFKIILSDPNVKAILVNIFGG 321 (388)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 999999999999999985 777755
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=2.5e-49 Score=358.63 Aligned_cols=191 Identities=31% Similarity=0.489 Sum_probs=165.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 5 ~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+|||||||+||++| ||||| ++.+++++ +|+.+++++++..++|||||+++|||||+|||+++.|++|++++
T Consensus 1 ~l~EyqaK~ll~~~-----gi~vp--~g~~a~s~--eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKY-----GIPVP--RGVVATSP--EEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCT-----T------SEEEESSH--HHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHc-----CCCCC--CeeecCCH--HHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHH
Confidence 58999999999999 99998 99999875 69999999998778999999999999999999999999999999
Q ss_pred HHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC--CceEEeeccCcccccc----cccceeEEEcCCc
Q 019240 85 VKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE----NWDKVKTIFLPTE 155 (344)
Q Consensus 85 a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~--~p~il~s~~GGv~iE~----~~d~~~~~~l~~~ 155 (344)
+++|+|+++.| +++.+ ++++|||||++++.+|||+++++||. +|++++|.+|||+||+ .|+++.++|+||.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999999987 67777 89999999999999999999999998 5899999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee
Q 019240 156 KHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL 204 (344)
Q Consensus 156 ~~l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v 204 (344)
.+++++++++++. |++....+++.+++.+||++|.++|++++|||||++
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 9999999999997 555678999999999999999999999999999985
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=2.8e-36 Score=277.14 Aligned_cols=199 Identities=19% Similarity=0.242 Sum_probs=141.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEe-CCHHH
Q 019240 3 RKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALN-LDLAQ 80 (344)
Q Consensus 3 ~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~-~s~ee 80 (344)
|..|+|+|+|++|+.| ||++| ++.+++++ +|+.++++++| +|||+|..++ .-||+++|||+++ .|+++
T Consensus 7 ~~~L~e~e~~~lL~~y-----GI~~~--~~~~~~~~--~ea~~~a~~ig-~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~ 76 (222)
T PF13549_consen 7 RGWLTEAEAKELLAAY-----GIPVP--PTRLVTSA--EEAVAAAEEIG-FPVVLKIVSPDIAHKSDVGGVRLNLNSPEE 76 (222)
T ss_dssp --EE-HHHHHHHHHTT-----T--------EEESSH--HHHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHH
T ss_pred CCccCHHHHHHHHHHc-----CcCCC--CeeEeCCH--HHHHHHHHHhC-CCEEEEEecCCCCcCCCCCcEEECCCCHHH
Confidence 5679999999999999 99998 88888764 69999999997 8999998765 5699999999999 69999
Q ss_pred HHHHHHHHhcccchhcCCCcceeeEEEEeecC-CCceEEEEEEEcCC-CceEEeeccCcccccccccceeEEEcCCcCCC
Q 019240 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVP-HNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTIFLPTEKHM 158 (344)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~-~~~Elylgi~~Dr~-~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~l 158 (344)
+++++++|..+... +.|...+.+|+||+|++ .+.|+++|+++||. ||+|+|| .||+.+|.+.|.++++ +| +
T Consensus 77 v~~a~~~l~~~~~~-~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G-~GG~~vE~~~D~~~~l--~P---l 149 (222)
T PF13549_consen 77 VREAFERLRERVAA-HHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG-LGGIFVELLKDVAFRL--PP---L 149 (222)
T ss_dssp HHHHHHHHHHHHHH-H-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE-E-STTHHHH---EEEE--SS----
T ss_pred HHHHHHHHHHHHHH-hCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc-CCCceeeeecceEEee--CC---C
Confidence 99999999877543 44666889999999999 89999999999999 8999999 9999999999998886 35 4
Q ss_pred CHHHHHHHHc---------CCC---hHHHHHHHHHHHHHHHHhhcc-CcceeeeeeeeecCCceEEEeeeeee
Q 019240 159 TLDACAPLIA---------TLP---LEFRGKIGDFIMGVFAVFQDL-DFSFIEMNPFTLVNGEPYPLDMRGEL 218 (344)
Q Consensus 159 ~~~~a~~ll~---------g~~---~~~~~~l~~~l~~L~~lf~e~-d~~~lEINPL~v~~g~~~alDaki~i 218 (344)
+..++++|+. |++ +.|++++++++.+|+++..++ ++.++|||||++..++++|+||+|++
T Consensus 150 ~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g~~avDa~i~l 222 (222)
T PF13549_consen 150 SEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDGAVAVDARIRL 222 (222)
T ss_dssp -HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS-EEE--EEEEE
T ss_pred CHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCceEEEEEEEEC
Confidence 5777777753 443 479999999999999999987 69999999999933459999999975
No 11
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.85 E-value=1.7e-22 Score=198.16 Aligned_cols=274 Identities=42% Similarity=0.499 Sum_probs=234.5
Q ss_pred ccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCC------CceEEEE
Q 019240 47 EPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH------NQEYYLS 120 (344)
Q Consensus 47 a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~------~~Elylg 120 (344)
-.|+.+...|.|++.+++.|+|.|.|.++.+..+..++.+.+.+...+..+..++.+.+.|||.+++ -.|+|+.
T Consensus 74 ~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~ 153 (600)
T KOG1254|consen 74 EPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILN 153 (600)
T ss_pred eechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhh
Confidence 3455556789999999999999999999977777777888888877653333457889999999997 5799999
Q ss_pred EEEcCCCceEEeeccCcccccccccceeEEEcCCcCCC----CHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhccCcce
Q 019240 121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHM----TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSF 196 (344)
Q Consensus 121 i~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~l----~~~~a~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~ 196 (344)
+..+|.|.++.||..|||++|+..+.+.+.-. |.+++ +.+....++++++....+.+.++++.|+.++.+.+.+.
T Consensus 154 ~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g-~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~ 232 (600)
T KOG1254|consen 154 SKLYRPGSVIYVSRSGGMSNELNNIISRTTDG-PYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTF 232 (600)
T ss_pred hcccCCccEEEEecCCCcchhhhhhhhheecc-ceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeeh
Confidence 99999999999999999999998877666422 22321 34566777888877778889999999999999999999
Q ss_pred eeee-------eeee-cCC---ceEEEeeeeeeccchhhhcccccc--------------------------cccCCCCC
Q 019240 197 IEMN-------PFTL-VNG---EPYPLDMRGELDDTAAFKNFKKWA--------------------------NIEFPLPF 239 (344)
Q Consensus 197 lEIN-------PL~v-~~g---~~~alDaki~iDd~A~fR~~~~~~--------------------------~~~~~~~~ 239 (344)
+|+| ||++ .-| ..+-+|.....|+++.|.+-+.|. .++++.++
T Consensus 233 ~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~ 312 (600)
T KOG1254|consen 233 LEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPF 312 (600)
T ss_pred hhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhccccc
Confidence 9999 9999 544 368889999999999999888887 77888899
Q ss_pred CCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCC-hhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHHHH
Q 019240 240 GRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGG-GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYAR 318 (344)
Q Consensus 240 ~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGa-Glamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a~~ 318 (344)
++.....|....-+++..+..++|..++..|+|||++.|. |..+.+.|+....|+.-+-+|+-.+||-+..+++.+..+
T Consensus 313 Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~ 392 (600)
T KOG1254|consen 313 GRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYAR 392 (600)
T ss_pred ceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHH
Confidence 9999999999999999999999999999999999999999 999999999988777778999999999999999988877
Q ss_pred HHh
Q 019240 319 VVI 321 (344)
Q Consensus 319 ~il 321 (344)
..+
T Consensus 393 kfi 395 (600)
T KOG1254|consen 393 KFI 395 (600)
T ss_pred HHH
Confidence 664
No 12
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.23 E-value=2.7e-12 Score=133.09 Aligned_cols=122 Identities=22% Similarity=0.283 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHH
Q 019240 3 RKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQV 81 (344)
Q Consensus 3 ~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea 81 (344)
+..+.++|+|+++++| ||++| ++ ++++. +|+.++++.++ |...+ ..||+++|||.++.|..++
T Consensus 468 ~~~~~~~e~~~~l~~~-----gi~~~--~~-~~~~~--~ea~~~a~~~~------Kl~s~~i~hksev~gv~l~~~~~~v 531 (598)
T COG1042 468 GTTLDEPEAKELLEAY-----GIPVP--AT-IASTL--DEAVHIAESIG------KLRSPDIDHKSEVGGVMLNRTADAV 531 (598)
T ss_pred ccccCchhhhhHHHHh-----cCccc--cc-ccCCH--HHHHHHHHHhh------hccCCccchhhhccceeecCcHHHH
Confidence 4568999999999999 99998 77 77665 48888888874 76555 6799999999999999999
Q ss_pred HHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-CceEEeeccCcccccccccceeEE
Q 019240 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTI 150 (344)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il~s~~GGv~iE~~~d~~~~~ 150 (344)
+++++.++.+ | ..+.+++||+|.. .|+++++..|+. +|++++| .||+.+|.+.|.+.++
T Consensus 532 ~~a~~~~~~~------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fgp~i~~G-~Gg~~ve~l~d~~~~~ 591 (598)
T COG1042 532 EKAADDILAR------P-ARIAGVLVQTMAK--LELIVGVKNDPTFGPLILFG-EGGIEVEVLKDVVVAL 591 (598)
T ss_pred HHHHHhHhcc------c-chhhhhhhHhhhh--ccceeeccCCCcchhHHHhc-CCceEEEeecceeecc
Confidence 9999999875 5 6789999999999 999999999999 7999998 9999999999988875
No 13
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.11 E-value=8.4e-11 Score=102.36 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=56.7
Q ss_pred EeeCChhhHHHHHHHhhhcc--------------CCCcceeeecCCCCC----------HHHHHHHHHHHhcccCccE-E
Q 019240 275 MVAGGGASVIYADTVGDLGY--------------ASELGNYAEYSGAPN----------EEEVLQYARVVIDVRDFTN-F 329 (344)
Q Consensus 275 ~vnGaGlamat~D~i~~~g~--------------gg~pANFlD~GG~a~----------~~~v~~a~~~il~d~~v~~-~ 329 (344)
|.|||||+|.|||+|+. + |+.++||||+||++. .+.+.++++.+++||+++. +
T Consensus 1 l~~GgtL~~Ea~~~i~~--~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIl 78 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISD--ALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVIL 78 (153)
T ss_dssp EESSHHHHHHHHHHHHH--TTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEE
T ss_pred CcCcHHHHHHHHHHHHH--hhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEE
Confidence 68999999999999999 7 899999999999999 7999999999999999997 5
Q ss_pred EEeecce
Q 019240 330 GLFFGTQ 336 (344)
Q Consensus 330 ~~~~~~~ 336 (344)
+|+|+|+
T Consensus 79 vd~~~G~ 85 (153)
T PF00549_consen 79 VDIVGGI 85 (153)
T ss_dssp EEEESSS
T ss_pred EEecccc
Confidence 9999984
No 14
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.94 E-value=4.4e-09 Score=94.96 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred HHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcE-EEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRL-VVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 10 qak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pv-VvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
=+|+++++| |||++ ....+++ .++|.+..+..+ .|+ |||++.+++|| ||.++.|.+||.++.+++
T Consensus 5 faK~fm~~~-----~IPTa--~~~~f~~--~~~A~~~l~~~~-~p~~ViKadGla~GK----GV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 5 FAKEFMKRY-----GIPTA--KYKVFTD--YEEALEYLEEQG-YPYVVIKADGLAAGK----GVVIADDREEALEALREI 70 (194)
T ss_dssp HHHHHHHHT-----T-SB----EEEESS--HHHHHHHHHHHS-SSEEEEEESSSCTTT----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCCC--CeeEECC--HHHHHHHHHhcC-CCceEEccCCCCCCC----EEEEeCCHHHHHHHHHHh
Confidence 379999999 99887 8877765 568888888886 688 99999998888 899999999999999999
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+..... + ..-+.|+|||++. +.|+.+.+..|...
T Consensus 71 ~~~~~f--g--~~~~~vvIEE~l~-G~E~S~~a~~dG~~ 104 (194)
T PF01071_consen 71 FVDRKF--G--DAGSKVVIEEFLE-GEEVSLFALTDGKN 104 (194)
T ss_dssp HTSSTT--C--CCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred cccccc--C--CCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence 974332 2 1236799999998 89999999999875
No 15
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.68 E-value=7.1e-08 Score=95.33 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=82.5
Q ss_pred HHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhc
Q 019240 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLG 90 (344)
Q Consensus 11 ak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~ 90 (344)
+|+++++| |||++ ...+.+ ++++|.+..++.+ .|+||||+-+++|| ||+++.+.+||.+++++|+.
T Consensus 107 aK~fm~k~-----~IPta--~y~~f~--~~e~a~ayi~~~g-~piVVKadGLaaGK----GV~V~~~~eeA~~a~~~~l~ 172 (428)
T COG0151 107 AKDFMKKY-----GIPTA--EYEVFT--DPEEAKAYIDEKG-APIVVKADGLAAGK----GVIVAMTLEEAEAAVDEMLE 172 (428)
T ss_pred HHHHHHHc-----CCCcc--cccccC--CHHHHHHHHHHcC-CCEEEecccccCCC----CeEEcCCHHHHHHHHHHHHh
Confidence 68999999 99865 666665 4679999999987 79999999999888 99999999999999999987
Q ss_pred ccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 91 TEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 91 ~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
.... + .....|+|||++. +.|+.+-..+|...
T Consensus 173 ~~~f--g--~~g~~VVIEEfL~-GeE~S~~a~~DG~~ 204 (428)
T COG0151 173 GNAF--G--SAGARVVIEEFLD-GEEFSLQAFVDGKT 204 (428)
T ss_pred hccc--c--CCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence 6543 2 1224699999999 88999999999874
No 16
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.62 E-value=2.3e-06 Score=86.67 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| ++. .+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.++
T Consensus 115 DK~~~r~~l~~~-----gip~p--p~~~~~~~~--~~e~~~~~~~ig-~PvvvKP~~g~gs~----Gv~~v~~~~el~~~ 180 (449)
T TIGR00514 115 DKVSAIETMKKA-----GVPCV--PGSDGLVED--EEENVRIAKRIG-YPVIIKATAGGGGR----GMRVVREPDELVKS 180 (449)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcccCcCC--HHHHHHHHHHhC-CCEEEEeCCCCCCC----ccEEECCHHHHHHH
Confidence 457789999999 99987 543 3333 467877888886 89999998876666 89999999999998
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
++........ . .....++||++++..+|+.+.+..|..+.++.++
T Consensus 181 ~~~~~~~~~~--~--~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~ 225 (449)
T TIGR00514 181 ISMTRAEAKA--A--FGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLG 225 (449)
T ss_pred HHHHHHHHHH--h--CCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEe
Confidence 8876542211 0 1124699999999888999999999877665553
No 17
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.61 E-value=5.2e-07 Score=100.45 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
+.-|++|+++ |||+| +...+++. +++.+.++.+| +|+||||....||| |+.++.|++|+.+++++.
T Consensus 130 ~~~k~~l~~~-----GIpvp--~~~~v~s~--ee~~~~~~~ig-yPvVVKP~~g~gG~----Gv~iv~~~eEL~~a~~~~ 195 (1068)
T PRK12815 130 ERFRALMKEL-----GEPVP--ESEIVTSV--EEALAFAEKIG-FPIIVRPAYTLGGT----GGGIAENLEELEQLFKQG 195 (1068)
T ss_pred HHHHHHHHHc-----CcCCC--CceeeCCH--HHHHHHHHHcC-CCEEEEECcCCCCC----ceEEECCHHHHHHHHHHH
Confidence 4457888898 99988 87777654 57877788886 89999998666665 566788999999998877
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
++.. +...+|||+++++.+|+.+.+.+|+.+.++.++
T Consensus 196 ~~~s--------~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~ 232 (1068)
T PRK12815 196 LQAS--------PIHQCLLEESIAGWKEIEYEVMRDRNGNCITVC 232 (1068)
T ss_pred HhcC--------CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEE
Confidence 6532 235799999999879999999999887655443
No 18
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.59 E-value=1.2e-06 Score=80.40 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
..+++++++. |||+| ++......+.+++.++++++| |||++||-.--||| |.++..|.+|..++.++.
T Consensus 3 ~~~~~~~~~~-----gvp~~--pg~~~~~~~~eea~~~a~~iG-yPVliKas~ggGG~----gm~iv~~~~eL~~~~~~~ 70 (211)
T PF02786_consen 3 IRFRKLAKKL-----GVPVP--PGSTVPISSVEEALEFAEEIG-YPVLIKASAGGGGR----GMRIVHNEEELEEAFERA 70 (211)
T ss_dssp HHHHHHHHHT-----T-BBS--SBESSSBSSHHHHHHHHHHH--SSEEEEETTSSTTT----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-----CCCcC--CCCCCCCCCHHHHHHHHHhcC-CceEEeeccccccc----ccccccchhhhhhhhhhc
Confidence 4678999999 99888 776552234679999999997 99999998877777 888999999999888877
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
....... . .-..++||+++...+|+=+=+..|..+-++.++
T Consensus 71 ~~~s~~~-f---g~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~ 111 (211)
T PF02786_consen 71 QRESPAA-F---GDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLG 111 (211)
T ss_dssp HHHHHHH-H---STS-EEEEE--SSEEEEEEEEEEETTSEEEEEE
T ss_pred cccCccc-c---ccceEEEeeehhhhhhhhhhhhhccccceeeee
Confidence 6543210 0 124699999999889999999999988565544
No 19
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.59 E-value=3.4e-06 Score=80.60 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| ++..+.+.+ ++...+..++ +|+|+||..-.+++ ||....|.+|+.++.+
T Consensus 98 dK~~~k~~l~~~-----gIp~p--~~~~~~~~~--~~~~~~~~~~-~P~ivKP~~g~~s~----Gv~~v~~~~el~~~~~ 163 (304)
T PRK01372 98 DKLRTKLVWQAA-----GLPTP--PWIVLTREE--DLLAAIDKLG-LPLVVKPAREGSSV----GVSKVKEEDELQAALE 163 (304)
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeCcc--hHHHHHhhcC-CCEEEeeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 456788999999 99988 888877654 5666677786 89999999876655 6888889999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
+.... -..++|||+++ ++|+.+.+..|...+++-..
T Consensus 164 ~~~~~----------~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~ 199 (304)
T PRK01372 164 LAFKY----------DDEVLVEKYIK-GRELTVAVLGGKALPVIEIV 199 (304)
T ss_pred HHHhc----------CCcEEEEcccC-CEEEEEEEECCCccceEEEE
Confidence 66321 13599999998 78999998877655554333
No 20
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.51 E-value=8.8e-07 Score=89.56 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-..+|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 102 dK~~~K~~l~~~-----GIptp--~~~~~~~--~~e~~~~~~~~g-~PvVVKp~~~~~Gk----GV~iv~~~~el~~a~~ 167 (434)
T PLN02257 102 SKNFMKDLCDKY-----KIPTA--KYETFTD--PAAAKKYIKEQG-APIVVKADGLAAGK----GVVVAMTLEEAYEAVD 167 (434)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEeCC--HHHHHHHHHHcC-CCEEEEcCCCCCCC----CEEEECCHHHHHHHHH
Confidence 456789999999 99988 7777655 457877777886 89999999877777 8999999999999998
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... + ..-..++|||++.+ .|+.+.+..|..
T Consensus 168 ~~~~~~~f--g--~~~~~vlIEefi~G-~E~Sv~~~~dG~ 202 (434)
T PLN02257 168 SMLVKGAF--G--SAGSEVVVEEFLDG-EEASFFALVDGE 202 (434)
T ss_pred HHHhhhhc--c--CCCCeEEEEECCCC-CEEEEEEEECCC
Confidence 88653221 1 11246999999994 599998888864
No 21
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.51 E-value=7.6e-06 Score=80.16 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++. +++.++++.++ +|+|+||... .++| ||.+..|.+|+.++.
T Consensus 98 dK~~~k~~l~~~-----gip~p--~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~~g~~g~----Gv~~v~~~~el~~a~ 163 (352)
T TIGR01161 98 DRLTQKQFLQKL-----GLPVP--PFLVIKDE--EELDAALQELG-FPVVLKARTGGYDGR----GQYRIRNEADLPQAA 163 (352)
T ss_pred CHHHHHHHHHHc-----CCCCC--CccEeCCH--HHHHHHHHHcC-CCEEEEeCCCCCCCC----CEEEECCHHHHHHHH
Confidence 456678899998 99888 87777654 57777777886 8999999865 2444 899999999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+++.. ..++|||+++.+.|+.+.+.+|..|.+..+
T Consensus 164 ~~~~~------------~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~ 198 (352)
T TIGR01161 164 KELGD------------RECIVEEFVPFERELSVIVARSADGETAFY 198 (352)
T ss_pred HhcCC------------CcEEEEecCCCCeEEEEEEEEcCCCCEEEE
Confidence 76421 158999999988999888888877654443
No 22
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.48 E-value=7.8e-06 Score=80.97 Aligned_cols=104 Identities=22% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHH-HHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 9 YDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 9 yqak~lL-~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
+..|++| +++ |||+| +...+++. +++.+.+..++ +|+|+||....++| ||.+..|.+|+.++.+.
T Consensus 115 ~~~k~~l~~~~-----gip~p--~~~~~~s~--~~l~~~~~~~g-~P~VvKP~~g~~s~----Gv~~v~~~~el~~~~~~ 180 (395)
T PRK09288 115 EGIRRLAAEEL-----GLPTS--PYRFADSL--EELRAAVEEIG-YPCVVKPVMSSSGK----GQSVVRSPEDIEKAWEY 180 (395)
T ss_pred HHHHHHHHHhC-----CCCCC--CceEECCH--HHHHHHHHhcC-CCEEEEeCCCcCCC----CeEEECCHHHHHHHHHH
Confidence 4456666 467 99888 77777654 57777777886 89999998666555 79999999999999888
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+..... . .-..+||||+++.+.|+.+.+..|..+...++
T Consensus 181 ~~~~~~---~---~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~ 219 (395)
T PRK09288 181 AQEGGR---G---GAGRVIVEEFIDFDYEITLLTVRAVDGGTHFC 219 (395)
T ss_pred HHhhcc---c---cCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence 754211 0 11359999999988899998888876444333
No 23
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.48 E-value=4.5e-06 Score=85.22 Aligned_cols=110 Identities=11% Similarity=0.155 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| ++....-.+.+++.+.++++| +||||||-.-.|+| ||.+..|.+|+.++++
T Consensus 114 DK~~~r~~l~~~-----GIp~p--p~~~~~~~~~~e~~~~~~~ig-yPvvvKp~~ggGg~----Gv~~v~~~~eL~~a~~ 181 (472)
T PRK07178 114 DKTEARRAMIKA-----GVPVT--PGSEGNLADLDEALAEAERIG-YPVMLKATSGGGGR----GIRRCNSREELEQNFP 181 (472)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcCcCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCC----CceEeCCHHHHHHHHH
Confidence 456788999998 99987 554211123567878888886 89999997766666 8999999999998877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
..........+ ...++||+++...+|+-+.+..|..+.++.+
T Consensus 182 ~~~~~~~~~~~----~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~ 223 (472)
T PRK07178 182 RVISEATKAFG----SAEVFLEKCIVNPKHIEVQILADSHGNVVHL 223 (472)
T ss_pred HHHHHHHHhcC----CCCEEEEEcCCCCeEEEEEEEEECCCCEEEE
Confidence 65432211001 1358999999888999899999987765443
No 24
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.48 E-value=6.9e-07 Score=90.13 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+-+|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||.-..++| ||.++.|.+|+.++++
T Consensus 108 dK~~~K~~l~~~-----gIpt~--~~~~~~~--~~ea~~~~~~~~-~PvVVKp~~~~~gk----GV~vv~~~eel~~a~~ 173 (426)
T PRK13789 108 SKHFAKSLMKEA-----KIPTA--SYKTFTE--YSSSLSYLESEM-LPIVIKADGLAAGK----GVTVATEKKMAKRALK 173 (426)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEeeCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 556789999999 99887 7766654 457877777886 89999999887777 8999999999999999
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... +. .-..++|||++. +.|+.+.+..|..
T Consensus 174 ~~~~~~~~--g~--~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 174 EIFKDKKF--GQ--SGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHhhccc--cC--CCCeEEEEECcC-CeEEEEEEEECCC
Confidence 98743221 11 123699999999 4899999988764
No 25
>PLN02735 carbamoyl-phosphate synthase
Probab=98.47 E-value=4e-06 Score=93.56 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|+++ |||+| +...+++ .+++.+.++++|.+||||||....||+ ||.++.|.+|+.++.++
T Consensus 145 K~~~k~~l~~~-----GIpvp--~~~~v~s--~eea~~~~~~iG~yPvVVKP~~~~GG~----Gv~iv~n~eEL~~a~~~ 211 (1102)
T PLN02735 145 RELFKQAMEKI-----GLKTP--PSGIATT--LDECFEIAEDIGEFPLIIRPAFTLGGT----GGGIAYNKEEFETICKA 211 (1102)
T ss_pred HHHHHHHHHHC-----CCCCC--CeeEeCC--HHHHHHHHHHhCCCCEEEEeCCCCCCC----ceEEECCHHHHHHHHHH
Confidence 35678888998 99988 7777765 357777788886589999998777777 67788999999998877
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+... ....+|||+++.+.+|+-+.+..|..+.++.+
T Consensus 212 a~~~s--------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v 248 (1102)
T PLN02735 212 GLAAS--------ITSQVLVEKSLLGWKEYELEVMRDLADNVVII 248 (1102)
T ss_pred HHhcC--------CCCeEEEEEecCCCeEEEEEEEEcCCCCEEEE
Confidence 65321 23579999999976999999999987655443
No 26
>PRK08462 biotin carboxylase; Validated
Probab=98.46 E-value=6.6e-06 Score=83.17 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|++. |||+| ++. .+.+ .+++.+++++++ +|+||||..-.|+| ||.+..|.+|+.++
T Consensus 117 dK~~~r~~l~~~-----gIp~p--p~~~~~~~~--~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~~v~~~~eL~~~ 182 (445)
T PRK08462 117 DKSKAKEVMKRA-----GVPVI--PGSDGALKS--YEEAKKIAKEIG-YPVILKAAAGGGGR----GMRVVEDESDLENL 182 (445)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHH
Confidence 456778889998 99987 543 3333 457777788886 89999998776666 89999999999887
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
............+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 183 ~~~~~~~~~~~~~----~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~ 226 (445)
T PRK08462 183 YLAAESEALSAFG----DGTMYMEKFINNPRHIEVQILGDKHGNVIHV 226 (445)
T ss_pred HHHHHHHHHhccC----CCcEEEeccCCCCeEEEEEEEECCCCCEEEE
Confidence 6554322111001 1258999999878898898888877665554
No 27
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.45 E-value=1.4e-06 Score=87.36 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++. +++.+.++.++ +|+||||....|+| ||.+..|.+|+.++.+
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~~--~~~~~~~~~~~-~P~VvKP~~~~gs~----Gv~~v~~~~el~~~~~ 167 (420)
T PRK00885 102 SKAFAKDFMARY-----GIPTA--AYETFTDA--EEALAYLDEKG-APIVVKADGLAAGK----GVVVAMTLEEAKAAVD 167 (420)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEeCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----cEEEeCCHHHHHHHHH
Confidence 446678899999 99988 77777653 57777777786 89999998777777 7999999999999998
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... + ..-..+||||+++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--~--~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 168 DMLAGNKF--G--DAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHhhcccc--c--CCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 88753221 1 1124699999999 5899999998765
No 28
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.44 E-value=1.3e-06 Score=86.72 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
-+-+-+|++|+++ |||+| +...+++ .+++.+.++.++ +|+||||....++| ||.+..|.+|+.++.
T Consensus 66 ~dK~~~k~~l~~~-----gIptp--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~~gk----GV~iv~~~~el~~a~ 131 (379)
T PRK13790 66 GSKLFAKKIMEKY-----NIPTA--DYKEVER--KKDALTYIENCE-LPVVVKKDGLAAGK----GVIIADTIEAARSAI 131 (379)
T ss_pred CCHHHHHHHHHHC-----CCCCC--CEEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHH
Confidence 3456678999999 99988 7766654 357777777886 89999999877777 899999999999999
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++++... -..+||||++. +.|+-+.+..|..
T Consensus 132 ~~~~~~~~--------~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 132 EIMYGDEE--------EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHHhcCC--------CCeEEEEEccc-CceEEEEEEeeCC
Confidence 88764221 13599999998 5899999888754
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.44 E-value=1.4e-05 Score=82.30 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+.+|++|+++ |||+| ++......+.+++.+.++++| +||+|||..-.||| ||++..|.+|+.++.+
T Consensus 115 DK~~~k~~l~~~-----GVpv~--p~~~~~v~~~~e~~~~a~~ig-yPvvIKp~~GgGG~----Gv~iv~~~~eL~~a~~ 182 (499)
T PRK08654 115 SKINAKKLMKKA-----GVPVL--PGTEEGIEDIEEAKEIAEEIG-YPVIIKASAGGGGI----GMRVVYSEEELEDAIE 182 (499)
T ss_pred CHHHHHHHHHHc-----CcCCC--CCcCcCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----eEEEeCCHHHHHHHHH
Confidence 456789999999 99987 554321123568888888996 89999997666666 9999999999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.........-+ -..++||+++...+|+-+.+..|..+.++.++
T Consensus 183 ~~~~~a~~~f~----~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~ 225 (499)
T PRK08654 183 STQSIAQSAFG----DSTVFIEKYLEKPRHIEIQILADKHGNVIHLG 225 (499)
T ss_pred HHHHHHHHhCC----CCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 65432111001 13599999999889999999999887766554
No 30
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.43 E-value=1.5e-05 Score=80.57 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCce--EEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSA--QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~--~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| +. ..+++ .+++.+.+..++ +||||||....|+| ||.+..|.+|+.++
T Consensus 115 DK~~~r~~l~~~-----gIp~p--p~~~~~v~~--~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~iv~~~~el~~~ 180 (451)
T PRK08591 115 DKVTAKATMKKA-----GVPVV--PGSDGPVDD--EEEALAIAKEIG-YPVIIKATAGGGGR----GMRVVRTEAELEKA 180 (451)
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCc----eEEEECCHHHHHHH
Confidence 456778889998 99987 54 23333 457777778886 89999997665555 89999999999988
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.++....... . ..-..++||++++..+|+.+.+..|..+.++.+
T Consensus 181 ~~~~~~~~~~--~--~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~ 224 (451)
T PRK08591 181 FSMARAEAKA--A--FGNPGVYMEKYLENPRHIEIQVLADGHGNAIHL 224 (451)
T ss_pred HHHHHHHHHH--h--cCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEE
Confidence 8876432110 0 011358999999977898899999988766544
No 31
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.41 E-value=7.5e-06 Score=78.54 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
.+-+-+|++|+++ |||+| +....+.. . ...+.++ +|+||||-.-.+++ ||.+..|.+|+.++.
T Consensus 97 ~DK~~~k~~l~~~-----gIptp--~~~~~~~~----~-~~~~~~~-~P~vVKP~~ggss~----Gv~~v~~~~eL~~a~ 159 (296)
T PRK14569 97 MDKMISKEILMHH-----RMPTP--MAKFLTDK----L-VAEDEIS-FPVAVKPSSGGSSI----ATFKVKSIQELKHAY 159 (296)
T ss_pred HCHHHHHHHHHHC-----CCCCC--CeEEEchh----h-hhHhhcC-CCEEEEeCCCCCCc----CeEEcCCHHHHHHHH
Confidence 4557789999999 99998 76665432 1 1234565 89999997543333 688889999999887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCc
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGC 128 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p 128 (344)
++... . ..+|||++++ ++|+.+++..|...+
T Consensus 160 ~~~~~------~-----~~~lvEefI~-G~E~tv~vl~~~~~~ 190 (296)
T PRK14569 160 EEASK------Y-----GEVMIEQWVT-GKEITVAIVNDEVYS 190 (296)
T ss_pred HHHHh------c-----CCEEEEcccc-cEEEEEEEECCcCcc
Confidence 76521 1 2489999998 699999998655433
No 32
>PRK05586 biotin carboxylase; Validated
Probab=98.41 E-value=2.2e-05 Score=79.57 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| +.. .+.+ .+++.++++.++ +|+||||..-.|+| ||.+..|.+|+.++
T Consensus 115 DK~~~k~~l~~~-----GIpvp--~~~~~~~~~--~~e~~~~~~~ig-yPvvvKP~~gggg~----Gv~~v~~~~el~~a 180 (447)
T PRK05586 115 NKSNAREIMIKA-----GVPVV--PGSEGEIEN--EEEALEIAKEIG-YPVMVKASAGGGGR----GIRIVRSEEELIKA 180 (447)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----eeEEECCHHHHHHH
Confidence 446778999999 99988 653 3333 457777778886 89999997655555 89999999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++........-+ -..++||++++..+|+-+.+..|..+.++.++
T Consensus 181 ~~~~~~~~~~~~~----~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~ 225 (447)
T PRK05586 181 FNTAKSEAKAAFG----DDSMYIEKFIENPKHIEFQILGDNYGNVVHLG 225 (447)
T ss_pred HHHHHHHHHHhcC----CCeEEEEecCCCCeEEEEEEEECCCCCEEEEe
Confidence 7765432211001 13589999999778988999999877666553
No 33
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.40 E-value=1.7e-06 Score=86.63 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCc-EEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++. +++.+.++.++ +| +|+||+...|+| ||.+..|.+|+.+++
T Consensus 104 dK~~~k~~l~~~-----gIp~p--~~~~~~~~--~~~~~~~~~~g-~P~~VvKp~~~~gg~----Gv~~v~~~~el~~~~ 169 (423)
T TIGR00877 104 SKAFAKDFMKRY-----GIPTA--EYEVFTDP--EEALSYIQEKG-APAIVVKADGLAAGK----GVIVAKTNEEAIKAV 169 (423)
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEECCH--HHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHHHH
Confidence 456778999999 99888 77777654 57877788886 89 999998877777 899999999999998
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
++++.... +. ....++|||+++ +.|+.+.+..|..
T Consensus 170 ~~~~~~~~---g~--~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 170 EEILEQKF---GD--AGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHhc---CC--CCCeEEEEECcc-CceEEEEEEEcCC
Confidence 88865431 11 124699999999 4899999998864
No 34
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.39 E-value=2.1e-05 Score=77.90 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+.-|++|+++ |||+| +...+++. +++.++++++| +|+|+||-.. .++| ||.+..|.+|+.++++
T Consensus 101 K~~~k~~l~~~-----Gip~p--~~~~v~s~--~~l~~~~~~~g-~P~vlKp~~~g~~g~----Gv~~v~~~~el~~a~~ 166 (372)
T PRK06019 101 RLTEKQFLDKL-----GIPVA--PFAVVDSA--EDLEAALADLG-LPAVLKTRRGGYDGK----GQWVIRSAEDLEAAWA 166 (372)
T ss_pred HHHHHHHHHHC-----CCCCC--CceEeCCH--HHHHHHHHHcC-CcEEEEeCCCCcCCC----CeEEECCHHHHHHHHH
Confidence 34568888888 99988 87777654 57777777886 8999998753 3444 7889999999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+. . ..++||++++.++|+.+.+.+|..|.+..+
T Consensus 167 ~~~-------~-----~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~ 200 (372)
T PRK06019 167 LLG-------S-----VPCILEEFVPFEREVSVIVARGRDGEVVFY 200 (372)
T ss_pred hcC-------C-----CCEEEEecCCCCeEEEEEEEECCCCCEEEe
Confidence 651 0 248999999988999999898887765544
No 35
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.37 E-value=6.2e-06 Score=92.63 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCc-eEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICS-AQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~-~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+.+|++|+++ |||+| + ..++++ .+++.+++.+++ +||||||....|+| ||.++.|.+|+.+++
T Consensus 114 DK~~ar~ll~~~-----GVPt~--p~~~lv~s--~dea~~~a~~ig-yPvVVKP~~ggGG~----GV~iv~~~eEL~~a~ 179 (1201)
T TIGR02712 114 LKHTARELAEAA-----GVPLL--PGTGLLSS--LDEALEAAKEIG-YPVMLKSTAGGGGI----GMQKCDSAAELAEAF 179 (1201)
T ss_pred CHHHHHHHHHHC-----CCCCC--CceeecCC--HHHHHHHHHhcC-CeEEEEECCCCCCC----CEEEECCHHHHHHHH
Confidence 557789999999 99876 4 334444 458888888886 89999998776666 899999999999887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
++.........+ -.+++||++++.++|+-+.+..|..+.++.++
T Consensus 180 ~~~~~~~~~~f~----~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg 223 (1201)
T TIGR02712 180 ETVKRLGESFFG----DAGVFLERFVENARHVEVQIFGDGKGKVVALG 223 (1201)
T ss_pred HHHHHHHHHhcC----CCcEEEEecCCCCEEEEEEEEECCCCeEEEee
Confidence 776432110001 13599999999889999999999887666553
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.36 E-value=2.4e-05 Score=81.87 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++ .+++.++.+++| +|+||||-.. .++| |+.+..|.+|+.++.
T Consensus 121 DK~~~K~~l~~~-----GIptp--~~~~v~~--~~el~~~~~~ig-~P~VvKP~~ggs~g~----Gv~~v~~~~eL~~a~ 186 (577)
T PLN02948 121 DKYAQKVHFSKH-----GIPLP--EFMEIDD--LESAEKAGDLFG-YPLMLKSRRLAYDGR----GNAVAKTEEDLSSAV 186 (577)
T ss_pred CHHHHHHHHHHC-----CcCCC--CeEEeCC--HHHHHHHHHhcC-CcEEEEeCCCCCCCC----CeEEECCHHHHHHHH
Confidence 456678899999 99888 8777665 357777778886 8999999754 3455 688889999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+.+... . ..++||++++..+|+.+.+..|..+.+..+
T Consensus 187 ~~~~~~-----~-----~~vlvEefI~~~~EisV~v~r~~~G~i~~~ 223 (577)
T PLN02948 187 AALGGF-----E-----RGLYAEKWAPFVKELAVMVARSRDGSTRCY 223 (577)
T ss_pred HHhhCC-----C-----CcEEEEecCCCCeEEEEEEEECCCCCEEEe
Confidence 776321 1 248999999988999999998877655443
No 37
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.34 E-value=2.4e-05 Score=79.84 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccc--cCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPW--LSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~--lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
.+-+.+|+++++. |||+| +.......+.+++..+++. +| +||||||-.-.+++ ||.+..+.+|...
T Consensus 141 mDK~~tK~l~~~a-----GIPtp--p~~~~~~~~~eel~~~~~~~~IG-yPvVVKP~~GGSS~----GV~~Vkn~eELe~ 208 (493)
T PRK06524 141 DSKIVTTRLANEA-----GVPSV--PHVLGRVDSYDELSALAHGAGLG-DDLVVQTPYGDSGS----TTFFVRGQRDWDK 208 (493)
T ss_pred CCHHHHHHHHHHc-----CCCCC--CcccccCCCHHHHHHHHHhccCC-CcEEEEECCCCCCc----CEEEeCCHHHHHH
Confidence 3556789999998 99988 7665322233455544443 76 89999998543333 8889999999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCce
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~ 129 (344)
+++++.+. ..++||++++ +.|+-|.+.+|..+.+
T Consensus 209 a~~~~~~~-----------~~viVEe~I~-GrEitVev~vd~dG~V 242 (493)
T PRK06524 209 YAGGIVGQ-----------PEIKVMKRIR-NVEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHhcCC-----------CCEEEEeccC-cEEEEEEEEEeCCCCE
Confidence 88776431 2488999997 7999998888877654
No 38
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.33 E-value=4.2e-05 Score=75.42 Aligned_cols=102 Identities=23% Similarity=0.161 Sum_probs=73.7
Q ss_pred HHHHHHHH-HHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL-~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+..|+++ +++ |||+| +...+++. +++.+++++++ +|+|+||-...++| ||.+..|.+|+.++++
T Consensus 101 K~~~~~~~~~~~-----gip~p--~~~~~~~~--~~~~~~~~~~g-~P~VvKP~~g~~s~----gv~~v~~~~el~~~~~ 166 (380)
T TIGR01142 101 REGIRRLAAEEL-----GLPTS--RYMFADSL--DELREAVEKIG-YPCVVKPVMSSSGK----GQSVVRGPEDIEKAWE 166 (380)
T ss_pred HHHHHHHHHHHC-----CCCCC--CceEeCCH--HHHHHHHHHcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHH
Confidence 34456654 777 99888 77777653 47777777886 89999997655555 8999999999999888
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCce
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~ 129 (344)
....... . .-..+||||+++...|+-+-+..+..+.+
T Consensus 167 ~~~~~~~---~---~~~~~ivEe~i~~~~E~sv~~~~~~~g~~ 203 (380)
T TIGR01142 167 YAQEGAR---G---GAGRVIVEEFIDFDYEITLLTVRHVDGNT 203 (380)
T ss_pred HHHhhcc---C---CCCCEEEEEecCCCEEEEEEEEEcCCCCE
Confidence 7643211 0 11359999999977899887777665533
No 39
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.23 E-value=7.7e-06 Score=71.49 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..+++++++ |||+| +...+++. +++.+....++ +|+||||..-.|++ ||.+..|+++..++.+
T Consensus 4 dK~~~~~~~~~~-----gv~~P--~~~~~~~~--~~~~~~~~~~~-~p~vvKp~~g~gs~----gv~~~~~~~~l~~~~~ 69 (184)
T PF13535_consen 4 DKYRMRELLKKA-----GVPVP--KTRIVDSE--EELRAFAEDLG-FPFVVKPVDGSGSR----GVFIVHSPEELEAALA 69 (184)
T ss_dssp CHHHHHHHHHHH-----TS------EEEECSH--HHHHHHHHHSS-SSEEEEESS-STTT----T-EEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CEEEECCH--HHHHHHHHHcC-CCEEEEcCccccCC----CEEEeCCHHHHHHHHH
Confidence 346678999999 99988 88777654 57778888887 89999998876655 8999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCce
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~ 129 (344)
++..... .....++|||+++ +.|+.+-+..+ .+.+
T Consensus 70 ~~~~~~~------~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~ 104 (184)
T PF13535_consen 70 EIREDSP------LGNGPVIVQEYIP-GDEYSVDGVVD-DGEV 104 (184)
T ss_dssp HHHHHHS-------HSSSEEEEE----SEEEEEEEEEE-TTEE
T ss_pred HHHHhcc------cCCccEEEEEeee-eeeEEEEEEEE-cceE
Confidence 8754321 0124699999999 68999998888 5544
No 40
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.22 E-value=7.6e-05 Score=76.43 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEe-ecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVT-ESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~-~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| ++... ...+.+++.+.++.+| +||+|||-.-.|+| ||.+..|.+|+.++.
T Consensus 114 DK~~~k~~l~~~-----gIpvp--p~~~~~~~~~~~~~~~~~~~ig-yPvvvKP~~ggGg~----Gv~iv~~~~eL~~a~ 181 (478)
T PRK08463 114 NKNIARYLMKKN-----GIPIV--PGTEKLNSESMEEIKIFARKIG-YPVILKASGGGGGR----GIRVVHKEEDLENAF 181 (478)
T ss_pred cHHHHHHHHHHc-----CCCCC--CCccccCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ceEEeCCHHHHHHHH
Confidence 346778899999 99987 54332 1123567777788886 89999997766666 899999999998877
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
...........+ -..++||+++...+|+-+.+..|..+.++.+.
T Consensus 182 ~~~~~~a~~~~~----~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~ 225 (478)
T PRK08463 182 ESCKREALAYFN----NDEVFMEKYVVNPRHIEFQILGDNYGNIIHLC 225 (478)
T ss_pred HHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 654221110001 13589999998778888888888877665554
No 41
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.18 E-value=8.6e-06 Score=90.71 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|++. |||+| ++..+++. +++.++++++| +|+||||..-.|+| |+.++.|++|+.+++++
T Consensus 128 K~~~k~~l~~~-----Gipvp--~~~~v~s~--~e~~~~~~~ig-yPvIVKP~~g~gg~----Gv~iv~~~eeL~~~~~~ 193 (1050)
T TIGR01369 128 RELFREAMKEI-----GEPVP--ESEIAHSV--EEALAAAKEIG-YPVIVRPAFTLGGT----GGGIAYNREELKEIAER 193 (1050)
T ss_pred HHHHHHHHHHC-----CCCCC--CeeecCCH--HHHHHHHHHhC-CCeEEECCCCCCCC----CeEEECCHHHHHHHHHH
Confidence 34568888888 99888 88777654 57878888886 89999998666666 67788899999988777
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+... +...+|||+++++.+|+.+.+.+|..+.++.+
T Consensus 194 ~~~~s--------~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 194 ALSAS--------PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred HHhcC--------CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 76421 23469999999977999999999988766554
No 42
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.18 E-value=5.1e-05 Score=67.51 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=67.3
Q ss_pred HHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHHHHHHHHHhcccc
Q 019240 15 LKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVKGRLGTEV 93 (344)
Q Consensus 15 L~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~ 93 (344)
|++. |||+| +...+.+. +++.+++.++| +|+|+|+-.. ..|| |..+..+.+++..+++.+-.
T Consensus 1 l~~~-----gip~~--~~~~i~~~--~~l~~a~~~iG-~P~vlK~~~~GYDGk----Gq~~i~~~~dl~~a~~~~~~--- 63 (172)
T PF02222_consen 1 LDEL-----GIPTA--PYATIDSL--EDLEEAAESIG-FPAVLKTRRGGYDGK----GQFVIRSEEDLEKAWQELGG--- 63 (172)
T ss_dssp HHHT-----T--B---EEEEESSH--HHHHHHHHHHT-SSEEEEESSSSCTTT----TEEEESSGGGHHHHHHHTTT---
T ss_pred Cccc-----CCCCC--CeEEECCH--HHHHHHHHHcC-CCEEEEccCcCcCCC----ccEEECCHHHHHHHHHhcCC---
Confidence 5667 99888 88888764 58888889997 8999995443 3344 77788898999888877711
Q ss_pred hhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 94 EMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 94 ~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
..+++|++++..+|+-+-+.+|.+|.+..+-
T Consensus 64 ---------~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp 94 (172)
T PF02222_consen 64 ---------GPCILEEFVPFDREISVIVARDQDGEIRFYP 94 (172)
T ss_dssp ---------SCEEEEE---ESEEEEEEEEEETTSEEEEEE
T ss_pred ---------CcEEEEeccCCcEEEEEEEEEcCCCCEEEEc
Confidence 2489999999999999999999998665554
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=98.18 E-value=6.1e-05 Score=84.25 Aligned_cols=102 Identities=12% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|+++ |||+| ++..+++ .+++.+.++.+| +||+|||....||| |+.+..|.+|+.++.++
T Consensus 703 K~~~k~~l~~~-----GIp~p--~~~~v~s--~eea~~~a~~iG-yPvvVKP~~g~gG~----G~~iV~~~eeL~~al~~ 768 (1102)
T PLN02735 703 RERFNAILNEL-----KIEQP--KGGIARS--EADALAIAKRIG-YPVVVRPSYVLGGR----AMEIVYSDDKLKTYLET 768 (1102)
T ss_pred HHHHHHHHHHc-----CCCCC--CeeEeCC--HHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHH
Confidence 45678889998 99988 7777665 458888888897 89999998776777 88999999999988877
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEE
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 131 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il 131 (344)
..... + -..++||++++.++|+-+.+..|..+.+++
T Consensus 769 a~~~~-----~---~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~ 804 (1102)
T PLN02735 769 AVEVD-----P---ERPVLVDKYLSDATEIDVDALADSEGNVVI 804 (1102)
T ss_pred HHHhc-----C---CCCEEEEEecCCcEEEEEEEEECCCCCEEE
Confidence 65321 1 124899999988899999999998765544
No 44
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.18 E-value=4.6e-05 Score=85.39 Aligned_cols=109 Identities=11% Similarity=0.116 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEE--eecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQV--TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~--~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+.+|++++++ |||+| ++.. +.+ .+++.++++++| +||++||-.-.|+| ||++..+.+|+.++
T Consensus 119 DK~~~r~~l~~~-----GVPv~--P~~~~~v~s--~eea~~~a~~iG-yPvVVKP~~GgGGr----Gv~vV~~~eEL~~a 184 (1146)
T PRK12999 119 DKVAARNAAIKA-----GVPVI--PGSEGPIDD--IEEALEFAEEIG-YPIMLKASAGGGGR----GMRIVRSEEELEEA 184 (1146)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcccCCCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----CeEEeCCHHHHHHH
Confidence 456788999998 99986 5442 333 468888888997 89999998766666 89999999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++........-+ -..++||++++..+|+-+.+..|..+.++.+.
T Consensus 185 ~~~a~~ea~~~fg----~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~ 229 (1146)
T PRK12999 185 FERAKREAKAAFG----NDEVYLEKYVENPRHIEVQILGDKHGNVVHLY 229 (1146)
T ss_pred HHHHHHHHHhhcC----CCcEEEecCCCCCeEEEEEEEEECCCCEEEEE
Confidence 7765432211001 13599999999778888888888877665543
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.18 E-value=4.6e-05 Score=85.16 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+.+|++++++ |||+| ++......+.+++.+.++++| +|++|||-.-.||| |+.+..+.+|+.++.+
T Consensus 115 DK~~ar~la~~~-----GVPvp--p~t~~~v~~~eea~~~ae~iG-yPvIVKP~~GGGGr----G~riV~~~eEL~~a~~ 182 (1143)
T TIGR01235 115 DKVAARNLAIKA-----GVPVV--PGTDGPPETMEEVLDFAAAIG-YPVIIKASWGGGGR----GMRVVRSEADVADAFQ 182 (1143)
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcccCcCCHHHHHHHHHHcC-CCEEEEECCCCCCC----ccEEeCCHHHHHHHHH
Confidence 456789999999 99987 543211113468888888886 89999996655555 8999999999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+........-+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 183 ~a~~ea~~~fg----~~~vlIEefI~g~reIeVqVlgD~~G~vv~l 224 (1143)
T TIGR01235 183 RAKSEAKAAFG----NDEVYVEKLIERPRHIEVQLLGDKHGNVVHL 224 (1143)
T ss_pred HHHHHHHHhcC----CCcEEEEEcCCCCeEEEEEEEEeCCCCEEEE
Confidence 66432211001 1358999999888899999999988766543
No 46
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.15 E-value=4.1e-05 Score=85.38 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
+..+++|+++ |||+| ++..+++. +|+.+.+.+++ +||+|||....|+| ||.++.|.+|..++.++.
T Consensus 671 ~~f~~lL~~~-----GIp~P--~~~~v~s~--ee~~~~~~~ig-yPvIVKP~~~~Gg~----gv~iv~~~eeL~~~l~~a 736 (1050)
T TIGR01369 671 EKFSELLDEL-----GIPQP--KWKTATSV--EEAVEFASEIG-YPVLVRPSYVLGGR----AMEIVYNEEELRRYLEEA 736 (1050)
T ss_pred HHHHHHHHHC-----CcCCC--CeEEECCH--HHHHHHHHhcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 4457788888 99988 88777664 58888888886 89999997766666 788899999999988877
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
..... -..+|||++++.+.|+-+.+..|..
T Consensus 737 ~~~s~--------~~~vlVeefI~~G~E~~Vd~l~d~g 766 (1050)
T TIGR01369 737 VEVSP--------EHPVLIDKYLEDAVEVDVDAVSDGE 766 (1050)
T ss_pred HHhCC--------CCCEEEeecCCCCeEEEEEEEEeCC
Confidence 54211 1349999999988999999999864
No 47
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.14 E-value=9.9e-05 Score=80.23 Aligned_cols=100 Identities=16% Similarity=0.054 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecC----CHHh-HHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTEST----DFSE-LTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~----~~~e-a~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (344)
.+-+.+|++|+++ |||+| ++...+.. +.++ ..+..+.++ +|++|||-..- -| -||....+.+|
T Consensus 567 ~DK~~~K~~l~~~-----GIpt~--~~~~~~~~~~~~~~~~~~~~~~~~lg-~P~iVKP~~~G--sS--~Gv~~v~~~~e 634 (809)
T PRK14573 567 MDKVLTKRFASDV-----GVPVV--PYQPLTLAGWKREPELCLAHIVEAFS-FPMFVKTAHLG--SS--IGVFEVHNVEE 634 (809)
T ss_pred cCHHHHHHHHHHC-----CCCCC--CEEEEechhcccChHHHHHHHHHhcC-CCEEEeeCCCC--CC--CCEEEECCHHH
Confidence 4557789999999 99988 77666421 1112 234456776 89999998653 23 38989999999
Q ss_pred HHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
..++.++.+.. . ..+||||++..++|+-+++..|..+
T Consensus 635 l~~a~~~a~~~-----~-----~~vlVEe~i~~grEi~v~vl~~~~~ 671 (809)
T PRK14573 635 LRDKISEAFLY-----D-----TDVFVEESRLGSREIEVSCLGDGSS 671 (809)
T ss_pred HHHHHHHHHhc-----C-----CcEEEEeccCCCEEEEEEEEeCCCC
Confidence 99998876521 1 2489999998789999999988764
No 48
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.12 E-value=2e-05 Score=79.54 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCce--EEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSA--QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~--~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
-+-+..|++|+++ |||+| +. ...+ +.+++.+.++.++ +|+||||....|+| ||.+..|.+|+.+
T Consensus 114 ~dK~~~k~~l~~~-----gIp~p--~~~~~~~~--~~~e~~~~~~~~~-~P~VvKP~~g~gs~----Gv~iv~~~~el~~ 179 (450)
T PRK06111 114 GSKIEARRAMQAA-----GVPVV--PGITTNLE--DAEEAIAIARQIG-YPVMLKASAGGGGI----GMQLVETEQELTK 179 (450)
T ss_pred CCHHHHHHHHHHC-----CCCCC--CCcCcCcC--CHHHHHHHHHHhC-CCEEEEeCCCCCCc----eEEEECCHHHHHH
Confidence 3556778899999 99987 53 2233 3567777777886 89999998777666 8999999999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+.+..........+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 180 a~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~ 224 (450)
T PRK06111 180 AFESNKKRAANFFG----NGEMYIEKYIEDPRHIEIQLLADTHGNTVYL 224 (450)
T ss_pred HHHHHHHHHHHhcC----CCcEEEEcccCCCcEEEEEEEEcCCCCEEEE
Confidence 88775421110001 1258999999977888898998887655444
No 49
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.11 E-value=1.6e-05 Score=88.73 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|+++ |||+| +...+++. +++.++++++| +|+||||..-.|+| |+.+..|++|+.+++++
T Consensus 129 K~~~k~~l~~~-----Gipvp--~~~~v~s~--~e~~~~~~~ig-~PvVVKP~~g~gg~----Gv~iv~~~eeL~~a~~~ 194 (1066)
T PRK05294 129 RELFKEAMKKI-----GLPVP--RSGIAHSM--EEALEVAEEIG-YPVIIRPSFTLGGT----GGGIAYNEEELEEIVER 194 (1066)
T ss_pred HHHHHHHHHHC-----CcCCC--CeeeeCCH--HHHHHHHHHcC-CCeEEEcCCCCCCC----CeEEECCHHHHHHHHHH
Confidence 34558888888 99988 88777654 57777788886 89999998655555 67888999999988876
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+... ....++||+++++.+|+-+.+.+|..+.++.+
T Consensus 195 ~~~~s--------~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~ 231 (1066)
T PRK05294 195 GLDLS--------PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV 231 (1066)
T ss_pred HHhhC--------CCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence 65321 22469999999977899999999988765544
No 50
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.09 E-value=0.0004 Score=66.61 Aligned_cols=97 Identities=20% Similarity=0.151 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEee-cCC-HHhH--HhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTE-STD-FSEL--TNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~-~~~-~~ea--~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (344)
+-+..|++|+++ |||+| ++.+++ +.+ .+++ ......++ +|+||||-...+++ ||.+..|.+|+.
T Consensus 105 dK~~~~~~l~~~-----gip~p--~~~~~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~ 172 (315)
T TIGR01205 105 DKLLTKLLWKAL-----GLPTP--DYIVLTQNRASADELECEQVAEPLG-FPVIVKPAREGSSV----GVSKVKSEEELQ 172 (315)
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEecccccchhhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHH
Confidence 556788999999 99998 887765 432 1122 12234565 89999997765545 688889999999
Q ss_pred HHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
++.++.... . ..++|||+++ ++|+.+++..+..
T Consensus 173 ~~~~~~~~~-----~-----~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 173 AALDEAFEY-----D-----EEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHHHHhc-----C-----CcEEEEcCCC-CEEEEEEEECCCC
Confidence 888776421 1 2589999998 8899999987543
No 51
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=98.09 E-value=6.1e-07 Score=93.60 Aligned_cols=298 Identities=15% Similarity=0.032 Sum_probs=168.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCC----cccCCCceE------EeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcC
Q 019240 2 ARKKIREYDSKRLLKEHLKRLAG----LDLQICSAQ------VTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSG 70 (344)
Q Consensus 2 ~~~~L~Eyqak~lL~~~~~~~~G----I~vp~~~~~------~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~G 70 (344)
.|...-+|+.++.|.+| | +||+ +.. .+.+. ......+..++ .++|.|..++ +.|....+
T Consensus 20 ~~~~~vg~~i~~nL~~~-----g~g~i~PVn--p~~~~v~G~~ay~s--~~~lp~~~dla-v~~v~~~~~~~i~~~~~~k 89 (598)
T COG1042 20 ERPGKLGYEILRNLLEY-----GQGKIYPVN--PKYDEVLGVKAYTS--VADLPDAPDLA-VIVVPAKVVPEIVHELGEK 89 (598)
T ss_pred CCcchhHHHHHHHHHhc-----CCCceEecC--ccccccccccccch--HhhCCCCCCee-EEEechhhhHHHHHHhhcc
Confidence 35567899999999999 9 8877 433 34432 13334455664 7888885554 33455555
Q ss_pred eEEEe-CCHHHHHHHHHHHhccc--chhcCCCcceeeEEEEeecCCCceEEEE--EEEcCCCceEEeeccCccccccccc
Q 019240 71 LVALN-LDLAQVAEFVKGRLGTE--VEMGGCKGPITTFIVEPFVPHNQEYYLS--IVSDRLGCTISFSECGGIEIEENWD 145 (344)
Q Consensus 71 gV~l~-~s~eea~~~a~~~l~~~--~~~~g~~~~v~~vLVee~~~~~~Elylg--i~~Dr~~p~il~s~~GGv~iE~~~d 145 (344)
||+.+ ......+++.++..... +.. ...+-...++.|+.....+..+| .+.++..+.- +. -|++.++...+
T Consensus 90 Gv~~~i~is~gf~e~~~~~~~~e~~~~~--~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~-~~-g~~afvsqsga 165 (598)
T COG1042 90 GVKGAIVISAGFREAGEEGMELEKELVE--AARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLG-RG-GGGAFVSQSGA 165 (598)
T ss_pred CCceEEEechhhhHHhhhHhHHHHHHHH--HHHhcCceEeccccccccccccccccccCcccccc-cC-CCeEEEEechH
Confidence 65554 23333333333322111 100 00122468999999988899999 7777763222 33 55567776655
Q ss_pred ceeEE-EcCCcCCCC-HHHHHH--HHc-CCChHHHHHHHHHHHHHHHHhhcc-Ccceeeeeeeee-cCC-ceEEEeeeee
Q 019240 146 KVKTI-FLPTEKHMT-LDACAP--LIA-TLPLEFRGKIGDFIMGVFAVFQDL-DFSFIEMNPFTL-VNG-EPYPLDMRGE 217 (344)
Q Consensus 146 ~~~~~-~l~~~~~l~-~~~a~~--ll~-g~~~~~~~~l~~~l~~L~~lf~e~-d~~~lEINPL~v-~~g-~~~alDaki~ 217 (344)
...++ +....+++- ...+.. ..+ +........+.+...+.-.++.|. +....++||... +.+ .++++|+..+
T Consensus 166 v~~~il~~~~~~~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~kpii~lk~gr~ 245 (598)
T COG1042 166 VSFAILDWANEDGMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKKPIIALKAGRS 245 (598)
T ss_pred HHHhccchhhhcCCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 44432 221111000 000000 000 111112223333344444445543 233556777776 332 3888888766
Q ss_pred eccch------------------hhhcccccccccCCCCCCCCCCccccccCccchhhhccCCcEEEccC-CcEEEEeeC
Q 019240 218 LDDTA------------------AFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPK-GRIWTMVAG 278 (344)
Q Consensus 218 iDd~A------------------~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~-G~Ig~~vnG 278 (344)
..... +|||-- ..+..+..|.. ...+.-..+..+. -++..+.||
T Consensus 246 ~~~akAa~shTgslag~~~~y~Aa~~~ag----------vir~~~~~elf-------~~~k~l~~~~~~~g~~~~ivtn~ 308 (598)
T COG1042 246 EAGAKAAASHTGSLAGSDEAYDAAFKQAG----------VIRVESIEELF-------DAAKALSHQPPPAGDRVAIITNG 308 (598)
T ss_pred HHHHHHHhcccccccccchhhHHHHHhhC----------ceeccChHHHH-------HHHHHhccCCCCCCcceeEEecC
Confidence 55433 333322 11334444431 1112111233334 488999999
Q ss_pred ChhhHHHHHHHhhhccCCC---------------------cceeeecCCCCCHHHHHHHHHHHhcccCccEEEEe
Q 019240 279 GGASVIYADTVGDLGYASE---------------------LGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 279 aGlamat~D~i~~~g~gg~---------------------pANFlD~GG~a~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
+|......|.+-. .|.+ ..|=+|+-|.++.++-.++.++++.|++++.+..+
T Consensus 309 Gg~gvla~D~l~~--~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi 381 (598)
T COG1042 309 GGPGVLAADALEE--RGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVI 381 (598)
T ss_pred CCccccchhHHHH--cCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEE
Confidence 9999999999988 4554 56788999999999999999999999999986444
No 52
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.08 E-value=1.6e-05 Score=81.02 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| ++. .+++ .+++.++++++| +||||||..-.|+| ||.+..|++|+.++
T Consensus 118 DK~~~r~~l~~~-----GIp~~--p~~~~~v~~--~~e~~~~~~~ig-yPvvvKp~~gggg~----Gv~~v~~~~eL~~a 183 (467)
T PRK12833 118 DKARARRTARRA-----GVPTV--PGSDGVVAS--LDAALEVAARIG-YPLMIKAAAGGGGR----GIRVAHDAAQLAAE 183 (467)
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcCcCcCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----eEEEECCHHHHHHH
Confidence 557789999999 99987 553 4433 467888888886 89999998766666 89999999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
.+........ .. .-..++||++++.++|+-+.+..|..+
T Consensus 184 ~~~~~~~~~~--~~--~~~~vlvEefi~~~~ei~v~v~~dg~~ 222 (467)
T PRK12833 184 LPLAQREAQA--AF--GDGGVYLERFIARARHIEVQILGDGER 222 (467)
T ss_pred HHHHHHHHHH--hc--CCCcEEEEecCCCCEEEEEEEEeCCCc
Confidence 7665332110 00 123589999999889999999888764
No 53
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.97 E-value=2.9e-05 Score=84.92 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEE-eCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVAL-NLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a 85 (344)
+-+.+|++|+++ |||+| ++..+++. +++.++++++| +|+|+||..-.+|+ ||.+ ..|.+|+.++.
T Consensus 213 DK~~tk~lL~~~-----GIpvP--~~~~~~s~--~ea~~~~~~ig-~PvVVKP~~g~~G~----GV~l~v~s~~el~~a~ 278 (864)
T TIGR02068 213 DKDLTKEILSDA-----GVPVP--EGTVVQSA--EDAWEAAQDLG-YPVVIKPYDGNHGR----GVTINILTRDEIESAY 278 (864)
T ss_pred CHHHHHHHHHHc-----CcCCC--CEEEECCH--HHHHHHHHHcC-CCEEEEECCCCCcc----CEEEEeCCHHHHHHHH
Confidence 446789999999 99998 88877654 58888888896 89999998654333 8888 47999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEE
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~ 122 (344)
+..... -..+|||++++ ++|+.+.+.
T Consensus 279 ~~a~~~----------~~~vlVEefI~-G~e~rvlVv 304 (864)
T TIGR02068 279 EAAVEE----------SSGVIVERFIT-GRDHRLLVV 304 (864)
T ss_pred HHHHhh----------CCcEEEEEecc-CCEEEEEEE
Confidence 766321 13599999998 689988664
No 54
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.95 E-value=3e-05 Score=83.27 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEE-eCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVAL-NLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a 85 (344)
+-..+|++|+++ |||+| ++..+.+. +++.++++++| +|||+||..-.+|| ||.+ ..|.+|+.++.
T Consensus 214 DK~~tk~lL~~~-----GIPvP--~~~~v~s~--~~a~~~a~~iG-~PvVVKP~~G~~G~----GV~~~v~~~~el~~a~ 279 (727)
T PRK14016 214 DKELTKRLLAAA-----GVPVP--EGRVVTSA--EDAWEAAEEIG-YPVVVKPLDGNHGR----GVTVNITTREEIEAAY 279 (727)
T ss_pred CHHHHHHHHHHC-----CcCCC--CeeEeCCH--HHHHHHHHHcC-CCEEEEECCCCCCC----ceEEecCCHHHHHHHH
Confidence 446789999999 99998 88777654 58888888996 89999997643333 8998 47999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEE
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~ 122 (344)
+..... + ..++||++++ +.|+.+.+.
T Consensus 280 ~~a~~~-----~-----~~viVEe~I~-G~d~Rv~Vv 305 (727)
T PRK14016 280 AVASKE-----S-----SDVIVERYIP-GKDHRLLVV 305 (727)
T ss_pred HHHHHh-----C-----CeEEEEEecC-CceEEEEEE
Confidence 766421 1 3699999998 788887654
No 55
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=97.95 E-value=3e-05 Score=79.26 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
.=+|.++.+| |||+. .....++ +++|..-.+....+++|+||+-++.|| ||.+..|.+||-+++++|
T Consensus 110 ~fsK~fm~r~-----~IPTA--~y~~ft~--~e~a~sfi~~~~~~~~ViKAdGLAAGK----GViv~~~~~EA~eAv~sI 176 (788)
T KOG0237|consen 110 NFSKDFMHRH-----NIPTA--KYKTFTD--PEEAKSFIQSATDKALVIKADGLAAGK----GVIVAKSKEEAFEAVDSI 176 (788)
T ss_pred HHHHHHHHhc-----CCCcc--eeeeeCC--HHHHHHHHHhCCCcceEEeecccccCC----ceEeeccHHHHHHHHHHH
Confidence 3478889999 99776 5555544 467777666666679999999998788 999999999999999999
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
|..... |. .=..|+|||++. +.|+.+=...|..
T Consensus 177 l~~~~f--g~--AG~tvViEE~LE-GeEvS~laftDG~ 209 (788)
T KOG0237|consen 177 LVKKVF--GS--AGKTVVIEELLE-GEEVSFLAFTDGY 209 (788)
T ss_pred Hhhhhh--cc--ccceEehhhhcC-cceEEEEEEecCc
Confidence 987664 32 236899999999 7898888888875
No 56
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.95 E-value=5.7e-05 Score=76.50 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE-EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe----CCHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ-VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN----LDLAQV 81 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~-~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~----~s~eea 81 (344)
+.+.+|++|+++ |||+| +.. .+.+. +|+..++.+++ +||||||.-.+|+| ||.++ .+.+++
T Consensus 105 dK~~~k~~l~~~-----gIptp--~~~~~~~~~--~e~~~~~~~~~-~PvVVKP~~~sggk----GV~v~~~~~~~~~ea 170 (435)
T PRK06395 105 SKMFMRYLMERH-----NIPGN--INFNACFSE--KDAARDYITSM-KDVAVKPIGLTGGK----GVKVTGEQLNSVDEA 170 (435)
T ss_pred CHHHHHHHHHHC-----CcCCC--cccceeCCh--HHHHHHHHhhC-CCEEEEeCCCCCCC----CeEEecCchhhHHHH
Confidence 445678889999 99886 443 34332 46666666775 89999999998888 88887 345666
Q ss_pred HHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
..++.++... -..+||||++. +.|+-+-+..|...
T Consensus 171 ~~~~~~~~~~----------~~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 171 IRYAIEILDR----------DGVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred HHHHHHHhCC----------CCcEEEEeecC-CceEEEEEEEcCCe
Confidence 6666665311 13499999998 67999999988754
No 57
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.92 E-value=0.00011 Score=66.86 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=62.8
Q ss_pred HHHHhhhcCCCcccCCCceEEeecCCHHh--HHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcc
Q 019240 14 LLKEHLKRLAGLDLQICSAQVTESTDFSE--LTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGT 91 (344)
Q Consensus 14 lL~~~~~~~~GI~vp~~~~~~~~~~~~~e--a~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (344)
||+.. |||+| +..+....+... ..+....++ +|++|||-.. |-|. ||..+.|.+|...+.++.+.
T Consensus 1 l~~~~-----gI~tp--~~~~~~~~~~~~~~~~~~~~~l~-~P~~VKP~~~--GsS~--Gi~~v~~~~el~~ai~~~~~- 67 (203)
T PF07478_consen 1 LLKSA-----GIPTP--PYVVVKKNEDDSDSIEKILEDLG-FPLFVKPASE--GSSI--GISKVHNEEELEEAIEKAFK- 67 (203)
T ss_dssp HHHHT-----T-BB---SEEEEETTSHHHHHHHHHHHHHS-SSEEEEESST--STTT--TEEEESSHHHHHHHHHHHTT-
T ss_pred Chhhc-----CCCCC--CEEEEecccccchhHHHHHhhcC-CCEEEEECCC--CccE--EEEEcCCHHHHHHHHHHHhh-
Confidence 56777 99998 998887765322 234456776 8999998754 2222 67788899999998887652
Q ss_pred cchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 92 ~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
. . ..+||||+++ ++|+-+|+.-+..
T Consensus 68 -~---~-----~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 68 -Y---D-----DDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp -T---H-----SEEEEEE--S-SEEEEEEEEESSS
T ss_pred -h---c-----ceEEEEeeec-ccceEEEEEecCC
Confidence 1 1 3699999995 8999999998665
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.91 E-value=0.00025 Score=79.34 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
+.-+++|+++ |||+| ++..+++. +++.+.+..+| +||||||-...|+| ||.+..|.+|++++.++.
T Consensus 672 ~~f~~ll~~~-----GIp~P--~~~~~~s~--ee~~~~~~~ig-yPvVVKP~~~~Gg~----gv~iv~~~eeL~~~l~~~ 737 (1068)
T PRK12815 672 DRFYQLLDEL-----GLPHV--PGLTATDE--EEAFAFAKRIG-YPVLIRPSYVIGGQ----GMAVVYDEPALEAYLAEN 737 (1068)
T ss_pred HHHHHHHHHc-----CcCCC--CeEEeCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHh
Confidence 4457788888 99988 88877664 58888888886 89999997666666 788899999999888776
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
.. .-..+|||++++ +.|+-+.+..|..
T Consensus 738 ~s----------~~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 738 AS----------QLYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred hc----------CCCCEEEEEeec-CceEEEEEEEcCC
Confidence 11 113589999996 6799999988865
No 59
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.90 E-value=8.7e-05 Score=72.36 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCH--HhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF--SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~--~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
.+-+.+|++|+++ |||+| ++....+.+. .......+.++ +|+||||-...+++ ||.+..+.+|..+
T Consensus 122 ~DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~~~~~-~P~vVKP~~~gsS~----Gv~~v~~~~el~~ 189 (333)
T PRK01966 122 MDKILTKRLLAAA-----GIPVA--PYVVLTRGDWEEASLAEIEAKLG-LPVFVKPANLGSSV----GISKVKNEEELAA 189 (333)
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEeccccchhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHHH
Confidence 4567789999999 99998 7777655431 11233445675 89999997653333 7888899999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
+.++.+.. + ..+|||++++ ++|+-+++..|
T Consensus 190 a~~~~~~~-----~-----~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 190 ALDLAFEY-----D-----RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHhc-----C-----CcEEEEcCcC-CEEEEEEEECC
Confidence 88876431 1 3699999999 69999999976
No 60
>PRK07206 hypothetical protein; Provisional
Probab=97.89 E-value=8.8e-05 Score=74.05 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCC---cEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSS---RLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~---pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
.-+.-+++|+++ |||+| +...+++ .+++.+.++.++ + |+||||-.-.|++ ||.++.|.+|+++
T Consensus 108 dK~~~r~~l~~~-----gi~~p--~~~~~~~--~~e~~~~~~~~g-~~~~P~VvKP~~g~gs~----gv~~v~~~~el~~ 173 (416)
T PRK07206 108 NKAEMINALAEA-----GLPAA--RQINTAD--WEEAEAWLRENG-LIDRPVVIKPLESAGSD----GVFICPAKGDWKH 173 (416)
T ss_pred CHHHHHHHHHHc-----CCCcc--cEEecCC--HHHHHHHHHhcC-CCCCCEEEeCCCCCCCC----CEEEeCCHHHHHH
Confidence 445667788888 99988 7777655 357777777775 6 9999997766666 8999999999999
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEE
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVS 123 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~ 123 (344)
+.+++++..-. .+ ..-..+||||+++ +.|+.+....
T Consensus 174 ~~~~~~~~~~~-~~--~~~~~~lvEe~i~-G~E~sv~~~~ 209 (416)
T PRK07206 174 AFNAILGKANK-LG--LVNETVLVQEYLI-GTEYVVNFVS 209 (416)
T ss_pred HHHHHHhcccc-CC--CCCCeEEEEEccc-cEEEEEEEEE
Confidence 99888753211 01 1225799999998 6899887765
No 61
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.88 E-value=0.00012 Score=74.20 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+.+++++++. |||++ ++.-....+.+|+.+.++++| +||+|||-.-.||| ||+++.+.+|+.+++.
T Consensus 115 dK~~ar~~~~~a-----GVP~v--pgs~~~~~~~ee~~~~a~~iG-yPVivKa~~GgGg~----G~r~v~~~~el~~a~~ 182 (449)
T COG0439 115 DKITARRLMAKA-----GVPVV--PGSDGAVADNEEALAIAEEIG-YPVIVKAAAGGGGR----GMRVVRNEEELEAAFE 182 (449)
T ss_pred hHHHHHHHHHHc-----CCCcC--CCCCCCcCCHHHHHHHHHHcC-CCEEEEECCCCCcc----cEEEECCHHHHHHHHH
Confidence 346789999998 99987 554211123579999999998 99999999988888 9999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
...+.....-+ -..+++|+++...+=+-+-+.-|..+-+|=++
T Consensus 183 ~~~~ea~~~fg----~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~ 225 (449)
T COG0439 183 AARGEAEAAFG----NPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLG 225 (449)
T ss_pred HHHHHHHHhcC----CCcEEeeeeccCCceEEEEEEEcCcccEEEEE
Confidence 88765432101 12499999999766666677777766555443
No 62
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.87 E-value=7.8e-05 Score=73.79 Aligned_cols=105 Identities=16% Similarity=0.286 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
.-.|+.|++. |+|+| +.++++. +++.+.+..+| +||+|||-.-.||. |+.++.|.+|..+.....
T Consensus 118 ~~fke~m~ei-----gi~~P---~~~~~~~--~e~~~~~~~ig-~PvIVrP~~~lGG~----G~~i~~n~eel~~~~~~~ 182 (400)
T COG0458 118 KLFKEAMREI-----GIPVP---SRIAHSV--EEADEIADEIG-YPVIVKPSFGLGGS----GGGIAYNEEELEEIIEEG 182 (400)
T ss_pred HHHHHHHHHc-----CCCCC---ccccccH--HHHhhhHhhcC-CCEEEecCcCCCCC----ceeEEeCHHHHHHHHHhc
Confidence 3457888888 99988 3355554 58889999997 89999987765544 455667999988887777
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC-ceEEeeccCc
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG-CTISFSECGG 137 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~-p~il~s~~GG 137 (344)
+.. .+++.+|+|+.+.+.+|+..-+.+|... +.++++ .+-
T Consensus 183 l~~--------s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~-men 223 (400)
T COG0458 183 LRA--------SPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCN-MEN 223 (400)
T ss_pred ccc--------CccccceeeeeecCceEEEEEEEEeCCCCEEEEEe-CCc
Confidence 543 2467899999999999999999999995 445544 443
No 63
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.87 E-value=0.00012 Score=70.56 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHh--hccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN--KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~--aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+..+++|+++ |||+| +...+++. +++.+ ...+++ +|+|+||..-.+++ ||.+..|.+|+.++..
T Consensus 113 ~~~~~~l~~~-----gip~p--~~~~~~~~--~~~~~~~~~~~~~-~P~viKP~~g~~s~----gv~~v~~~~el~~~~~ 178 (326)
T PRK12767 113 WLTYEFLKEN-----GIPTP--KSYLPESL--EDFKAALAKGELQ-FPLFVKPRDGSASI----GVFKVNDKEELEFLLE 178 (326)
T ss_pred HHHHHHHHHc-----CCCCC--CEEcccCH--HHHHhhhhcccCC-CCEEEEeCCCCCcc----CeEEeCCHHHHHHHHH
Confidence 4567888888 99888 77766554 46655 446675 89999997655444 7888899999887754
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCce
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~ 129 (344)
+. ..++|||+++ +.|+.+.+..|..|-+
T Consensus 179 ~~--------------~~~lvqeyi~-G~e~~v~~~~~~~G~~ 206 (326)
T PRK12767 179 YV--------------PNLIIQEFIE-GQEYTVDVLCDLNGEV 206 (326)
T ss_pred hC--------------CCeEEEeccC-CceEEEEEEEcCCCCE
Confidence 32 2589999996 7899999999866543
No 64
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.86 E-value=0.00012 Score=71.95 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCC----HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTD----FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQV 81 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~----~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea 81 (344)
.+-+..|++|+++ |||+| +....++.+ .+++.+..+.++ +|+||||-...+.+ ||.+..|.+|+
T Consensus 129 ~DK~~~k~~l~~~-----GI~~p--~~~~~~~~~~~~~~~~~~~~~~~l~-~PvvVKP~~ggsS~----GV~~v~~~~el 196 (347)
T PRK14572 129 MDKTRANQIFLQS-----GQKVA--PFFELEKLKYLNSPRKTLLKLESLG-FPQFLKPVEGGSSV----STYKITNAEQL 196 (347)
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEEccccccChHHHHHHHHhcC-CCEEEecCCCCCCC----CEEEECCHHHH
Confidence 3557789999999 99988 776654321 123333345675 89999996542223 78888999999
Q ss_pred HHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
+++.+..+.. . ..+||||+++ ++|+-+++..+
T Consensus 197 ~~a~~~~~~~-----~-----~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 197 MTLLALIFES-----D-----SKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred HHHHHHHHhc-----C-----CCEEEEcCcc-cEEEEEEEEeC
Confidence 9888877421 1 2489999998 69999999865
No 65
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.85 E-value=0.00012 Score=75.22 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHH------
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA------ 79 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e------ 79 (344)
-+-+.+|++|+++ |||+|. ....+++ .+++.+.++.+ +||||||....++| ||.++.|.+
T Consensus 108 ~dK~~~K~~l~~~-----gIpt~~-~~~~~~~--~~ea~~~~~~~--~PvVVKP~~~aggk----GV~iv~~~~e~~~~~ 173 (486)
T PRK05784 108 KSKVWARELMWKY-----SIPGRL-RYKVFYD--VEEAAKFIEYG--GSVAIKPARQAGGK----GVKVIADLQAYLSQE 173 (486)
T ss_pred cCHHHHHHHHHHc-----CcCCCc-cceEeCC--HHHHHHHHhhc--CCEEEeeCCCCCCC----CEEEECChhHhcchh
Confidence 3456788999999 998751 3444443 45777766554 59999999998888 999998876
Q ss_pred --HHH-HHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 80 --QVA-EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 80 --ea~-~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
++. ++.++++..... .+ ..-..|||||++. +.|+-+.+..|..
T Consensus 174 ~~ea~~~a~~~~~~~~~~-~g--~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 174 KREALTKSVNDIKEGSAY-YK--DVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred HHHHHHHHHHHHHHhHhh-cc--CCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 333 444555532110 01 1224699999999 6899999998764
No 66
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.85 E-value=0.0001 Score=70.77 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..+++|+++ |||+| +..++.++ +++.+.+++++++|+|+||-.-.+++ ||.+..+.++...+.+
T Consensus 99 dK~~~~~~l~~~-----gip~P--~t~~~~~~--~~~~~~~~~~~~~P~VvKP~~g~~g~----GV~~v~~~~~~~~~~~ 165 (300)
T PRK10446 99 DKLRSMQLLARQ-----GIDLP--VTGIAHSP--DDTSDLIDMVGGAPLVVKLVEGTQGI----GVVLAETRQAAESVID 165 (300)
T ss_pred cHHHHHHHHHHc-----CCCCC--CEEEeCCH--HHHHHHHHHhCCCCEEEEECCCCCcc----cEEEEcCHHHHHHHHH
Confidence 445678899998 99988 77776543 46666666664589999998765555 8888888888776665
Q ss_pred HHhcccchhcCCCcceeeEEEEeecC--CCceEEEEEEE
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVP--HNQEYYLSIVS 123 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~--~~~Elylgi~~ 123 (344)
..... . ..++|||+++ .+.|+.+.+.-
T Consensus 166 ~~~~~-----~-----~~~lvQe~I~~~~g~d~rv~vig 194 (300)
T PRK10446 166 AFRGL-----N-----AHILVQEYIKEAQGCDIRCLVVG 194 (300)
T ss_pred HHHhc-----C-----CCEEEEeeeccCCCceEEEEEEC
Confidence 44211 1 2489999996 47899998764
No 67
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.84 E-value=6.5e-05 Score=80.27 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeC---CHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNL---DLAQVAEF 84 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~---s~eea~~~ 84 (344)
-.-+|++|++. ||||| ++.++++. +++.++...++++||||||.....|+ ||.+.. +.+++.++
T Consensus 476 K~~TK~iL~~a-----GIPVP--~g~~~~~~--~~a~~~~~~~~g~PVVVKP~~g~~G~----GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 476 KVVTKKVLAEA-----GFRVP--FGDEFSSQ--ALALEAFSLFENKAIVVKPKSTNYGL----GITIFKNGFTLEDFQEA 542 (737)
T ss_pred HHHHHHHHHHc-----CcCCC--CEEEECCH--HHHHHHHHHhcCCCEEEeeCCCCCcC----CeEEecCcCCHHHHHHH
Confidence 45679999999 99998 88777654 35655556664589999998765555 787753 47777777
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
....+.. -..|+||++++ +.|+.+.+.-+..
T Consensus 543 l~~A~~~----------~~~VLVEefI~-G~EyRv~VIg~kv 573 (737)
T TIGR01435 543 LNIAFSE----------DSSVIIEEFLP-GTEYRFFVLNDKV 573 (737)
T ss_pred HHHHHhc----------CCeEEEEeccc-CCEEEEEEECCeE
Confidence 6544311 13599999998 7899998876543
No 68
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.81 E-value=0.00013 Score=80.22 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+.-|++|+++ |||+| +...+++. +++.+.+..++ +|+||||-.-.|++ ||.++.|.+|+.++.+
T Consensus 107 dK~~~r~~L~~~-----GIp~P--~~~~v~~~--~e~~~~~~~~~-~PvVVKP~~g~gS~----GV~~v~~~~el~~a~~ 172 (887)
T PRK02186 107 DKKRLARTLRDH-----GIDVP--RTHALALR--AVALDALDGLT-YPVVVKPRMGSGSV----GVRLCASVAEAAAHCA 172 (887)
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEeCCH--HHHHHHHHhCC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHH
Confidence 345667888888 99988 87777654 47777777776 89999997766666 7999999999998888
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
++.... -..++|||+++ +.||.+.+..+..+
T Consensus 173 ~~~~~~---------~~~~lvEEfI~-G~E~sVe~i~~~g~ 203 (887)
T PRK02186 173 ALRRAG---------TRAALVQAYVE-GDEYSVETLTVARG 203 (887)
T ss_pred HHHhcC---------CCcEEEeeccc-CCcEEEEEEEECCc
Confidence 775421 13599999998 58999988877543
No 69
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.79 E-value=0.00014 Score=81.40 Aligned_cols=96 Identities=14% Similarity=0.244 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
+..+++|++. |||+| ++..+++. +++.+.++.++ +||||||....|+| ||.+..|.+|+..+.++.
T Consensus 671 ~~~~~~L~~~-----GIp~P--~~~~~~s~--ee~~~~~~~ig-yPvvVKP~~~~Gg~----Gv~iv~~~eeL~~~~~~a 736 (1066)
T PRK05294 671 ERFSKLLEKL-----GIPQP--PNGTATSV--EEALEVAEEIG-YPVLVRPSYVLGGR----AMEIVYDEEELERYMREA 736 (1066)
T ss_pred HHHHHHHHHc-----CcCCC--CeEEECCH--HHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHH
Confidence 4457788888 99988 88777654 57877788886 89999997767776 788999999999888876
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
..... -..+|||+++++.+|+-+.+..|..
T Consensus 737 ~~~s~--------~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 737 VKVSP--------DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HhhCC--------CCcEEEEecCCCCEEEEEEEEecCC
Confidence 54211 1359999999966699999988865
No 70
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.79 E-value=5.8e-05 Score=76.71 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=56.7
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcc---------------------eeeecCCCCCHHHHHHHHHHHhcccCcc
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELG---------------------NYAEYSGAPNEEEVLQYARVVIDVRDFT 327 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pA---------------------NFlD~GG~a~~~~v~~a~~~il~d~~v~ 327 (344)
..+|+++.|++|+++.+.|.+.. +|.+.+ |++|++|.++.+.+.++++++++||+++
T Consensus 295 g~rvaivs~sGG~g~l~aD~~~~--~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd 372 (447)
T TIGR02717 295 GNRVAIITNAGGPGVIATDACEE--NGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVD 372 (447)
T ss_pred CCeEEEEECCchHHHHHHHHHHH--cCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCC
Confidence 46899999999999999999998 666655 9999999999999999999999999999
Q ss_pred EEEEee
Q 019240 328 NFGLFF 333 (344)
Q Consensus 328 ~~~~~~ 333 (344)
+++.++
T Consensus 373 ~Vlv~~ 378 (447)
T TIGR02717 373 GVVVVL 378 (447)
T ss_pred EEEEEc
Confidence 975444
No 71
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.76 E-value=0.00012 Score=78.80 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe---CCHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN---LDLAQVAE 83 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~---~s~eea~~ 83 (344)
+-+.+|++|+++ |||+| ++.++.+. +++.++...+.++|+||||....+|+ ||.+. .+.+++.+
T Consensus 488 DK~~tk~lL~~~-----GIpvP--~~~~~~~~--e~a~~~~~~~~g~PvVVKP~~g~~G~----GV~~~~~~~~~eel~~ 554 (752)
T PRK02471 488 NKVVTKKILAEA-----GFPVP--AGDEFTSL--EEALADYSLFADKAIVVKPKSTNFGL----GISIFKEPASLEDYEK 554 (752)
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEcCH--HHHHHHHHHhcCCCEEEEECCCCCcC----CeEEecCcCCHHHHHH
Confidence 446789999999 99998 88777653 46666666653589999999876666 78764 46788887
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEE
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~ 122 (344)
+.+..... + ..++|||+++ +.|+.+.+.
T Consensus 555 A~~~a~~~-----~-----~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 555 ALEIAFRE-----D-----SSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred HHHHHHhc-----C-----CcEEEEeccc-CCEEEEEEE
Confidence 77665321 1 3599999998 789999776
No 72
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.74 E-value=0.00027 Score=69.20 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +....++.+ +.. .+.++ +|+||||-...+.+ ||....|.+|..++.+
T Consensus 132 DK~~~k~~l~~~-----GIp~p--~~~~~~~~~--~~~--~~~l~-~P~iVKP~~~gsS~----Gv~~v~~~~eL~~a~~ 195 (343)
T PRK14568 132 DKSLAYIVAKNA-----GIATP--AFWTVTADE--RPD--AATLT-YPVFVKPARSGSSF----GVSKVNSADELDYAIE 195 (343)
T ss_pred CHHHHHHHHHHc-----CcCcC--CEEEEECCc--hhh--hhhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 456789999999 99988 777776543 221 24565 89999997653333 8888899999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+.... + ..+|||++++ ++|+-+++..|+.
T Consensus 196 ~a~~~-----~-----~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 196 SARQY-----D-----SKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred HHHhc-----C-----CcEEEECCcC-CEEEEEEEEcCCC
Confidence 65321 1 3599999998 6899999887654
No 73
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.70 E-value=0.00033 Score=69.27 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
+.-|++|+++ |||+| +. ..++ ++ ++ +||||||....|+| ||.++.|.+|+.++.+++
T Consensus 125 ~~~k~~L~~a-----GIp~p--~~--~~~~--~~-------i~-~PvIVKp~~g~ggk----Gv~i~~s~~El~~~~~~l 181 (358)
T PRK13278 125 DKERKLLEEA-----GIRIP--RK--YESP--ED-------ID-RPVIVKLPGAKGGR----GYFIAKSPEEFKEKIDKL 181 (358)
T ss_pred HHHHHHHHHc-----CCCCC--CE--eCCH--HH-------cC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHHHHHH
Confidence 3457788888 99988 53 3322 22 33 79999996656655 999999999999999988
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-CceEEee
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFS 133 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il~s 133 (344)
+.+... +....++|||++. +.|+++-+...+- +.+-++|
T Consensus 182 ~~~~~~-----~~~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~ 221 (358)
T PRK13278 182 IERGLI-----TEVEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLG 221 (358)
T ss_pred Hhcccc-----CCCCeEEEEecCC-CcEEEEEEEEeccCCeEEEEe
Confidence 764331 1246799999998 7899999888763 5554444
No 74
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.70 E-value=0.00024 Score=70.32 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecC----CHHhHHh-hccccCCCcEEEEeccccCcccCcCeEEEeCCHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTEST----DFSELTN-KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~----~~~ea~~-aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (344)
.+-+.+|++|+++ |||+| +....+.. +.+++.+ ....++ +|++|||...-++. ||.++.|.+|
T Consensus 128 ~DK~~tK~~l~~~-----GIpt~--p~~~~~~~~~~~~~~~~~~~~~~~lg-~PviVKP~~~GsS~----Gv~~v~~~~e 195 (364)
T PRK14570 128 INKYFCKLLLKSF-----NIPLV--PFIGFRKYDYFLDKEGIKKDIKEVLG-YPVIVKPAVLGSSI----GINVAYNENQ 195 (364)
T ss_pred HCHHHHHHHHHHc-----CCCCC--CEEEEeccccccchHHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEeCCHHH
Confidence 3567789999999 99987 66554321 1234433 235676 89999996542222 7888899999
Q ss_pred HHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
+..+.++.+.. . ..+|||+++. ++|+-+++.-|.
T Consensus 196 l~~al~~a~~~-----~-----~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 196 IEKCIEEAFKY-----D-----LTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred HHHHHHHHHhC-----C-----CCEEEECCcC-CEEEEEEEECCC
Confidence 99988876531 1 3599999998 799999998654
No 75
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.62 E-value=0.00012 Score=65.76 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHh
Q 019240 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (344)
Q Consensus 10 qak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (344)
-..++|+++ |||+| ++.++.+. +++.+..++++++|+|+||..-..|+ ||.+..+.+++....+...
T Consensus 6 ~~~~~l~~~-----gipvP--~t~~~~~~--~~~~~~~~~~~~~p~ViKp~~g~~G~----gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 6 LTLQLLAKA-----GIPVP--ETRVTNSP--EEAKEFIEELGGFPVVIKPLRGSSGR----GVFLINSPDELESLLDAFK 72 (190)
T ss_dssp HHHHHHHHT-----T-------EEEESSH--HHHHHHHHHH--SSEEEE-SB-----------EEEESHCHHHHHHH---
T ss_pred HHHHHHHHC-----CcCCC--CEEEECCH--HHHHHHHHHhcCCCEEEeeCCCCCCC----EEEEecCHHHHHHHHHHHH
Confidence 357889999 99998 88888764 58888888884489999996544344 8888889998887655432
Q ss_pred cccchhcCCCcceeeEEEEeecCCCc--eEEEEEE
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQ--EYYLSIV 122 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~--Elylgi~ 122 (344)
... ..+++|++++... ++.+-+.
T Consensus 73 ~~~----------~~~~~Q~fI~~~~g~d~Rv~Vi 97 (190)
T PF08443_consen 73 RLE----------NPILVQEFIPKDGGRDLRVYVI 97 (190)
T ss_dssp --T----------TT-EEEE----SS---EEEEEE
T ss_pred hcc----------CcceEeccccCCCCcEEEEEEE
Confidence 111 2369999998653 6665443
No 76
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.54 E-value=0.0005 Score=64.71 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..+++|+++ |||+| +...+.+ .+++.+....++ +|+|+||..-.+|+ ||.+..+.+++.++.+.
T Consensus 88 K~~~~~~l~~~-----gip~P--~t~~~~~--~~~~~~~~~~~~-~P~vvKP~~g~~g~----gv~~v~~~~~l~~~~~~ 153 (280)
T TIGR02144 88 KIFTYLKLAKA-----GVPTP--RTYLAFD--REAALKLAEALG-YPVVLKPVIGSWGR----LVALIRDKDELESLLEH 153 (280)
T ss_pred HHHHHHHHHHC-----CcCCC--CeEeeCC--HHHHHHHHHHcC-CCEEEEECcCCCcC----CEEEECCHHHHHHHHHH
Confidence 34567788888 99988 8777654 346666666776 89999997755555 68888888887766543
Q ss_pred HhcccchhcCCCcceeeEEEEeecCC-CceEEEEEE
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~-~~Elylgi~ 122 (344)
... + .+ ..-..++|||+++. +.|+.+.+.
T Consensus 154 ~~~--~--~~--~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 154 KEV--L--GG--SQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred HHh--h--cC--CcCCeEEEEcccCCCCCceEEEEE
Confidence 210 0 00 01135899999984 567666553
No 77
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0041 Score=61.17 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCCHHHHHHHHHHHh
Q 019240 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVKGRL 89 (344)
Q Consensus 11 ak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (344)
=|++|++. |||+| +.+++++. +|+..+++.+| +|.|+|.--. --|| |..+..+.++....++...
T Consensus 103 eK~~l~~~-----Gi~va--~~~~v~~~--~el~~~~~~~g-~p~VlKtr~gGYDGk----GQ~~i~~~~~~~~~~~~~~ 168 (375)
T COG0026 103 EKQFLDKA-----GLPVA--PFQVVDSA--EELDAAAADLG-FPAVLKTRRGGYDGK----GQWRIRSDADLELRAAGLA 168 (375)
T ss_pred HHHHHHHc-----CCCCC--CeEEeCCH--HHHHHHHHHcC-CceEEEeccccccCC----CeEEeeCcccchhhHhhhh
Confidence 38899998 99988 88888765 48888889997 8999997643 3334 6666666666665444332
Q ss_pred cccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
. + + ..++|++++..+|+.+=+.+++.|-+..+
T Consensus 169 ~------~--~---~~vlE~fV~F~~EiSvi~aR~~~G~~~~y 200 (375)
T COG0026 169 E------G--G---VPVLEEFVPFEREISVIVARSNDGEVAFY 200 (375)
T ss_pred c------c--C---ceeEEeecccceEEEEEEEEcCCCCEEEe
Confidence 1 1 1 12899999999999998888887766555
No 78
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.50 E-value=0.00092 Score=63.98 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+-.|++|+ . |||+| +....... . .+..++ +|+||||..-.+++ ||.+..|.+|..++.+
T Consensus 95 DK~~~k~~l~-~-----~ip~p--~~~~~~~~--~----~~~~l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~ 155 (299)
T PRK14571 95 DKLLTYRFLK-G-----TVEIP--DFVEIKEF--M----KTSPLG-YPCVVKPRREGSSI----GVFICESDEEFQHALK 155 (299)
T ss_pred CHHHHHHHHh-c-----CCCCC--CEEEEech--h----hhhhcC-CCEEEecCCCCCcC----CEEEECCHHHHHHHHH
Confidence 3445566666 4 88887 76665432 1 124565 89999998765555 8888899999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.+.. -..+||||+++ ++|+.+++..+..+
T Consensus 156 ~~~~~----------~~~vlVEeyI~-G~E~sv~vl~~~~~ 185 (299)
T PRK14571 156 EDLPR----------YGSVIVQEYIP-GREMTVSILETEKG 185 (299)
T ss_pred HHHhh----------CCcEEEEcccc-ceEEEEEEEcCCCC
Confidence 65431 12599999998 78999999987544
No 79
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00017 Score=69.13 Aligned_cols=81 Identities=23% Similarity=0.164 Sum_probs=60.6
Q ss_pred CcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCccee
Q 019240 24 GLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPIT 103 (344)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~ 103 (344)
|+|+ .+...+++. +|..++++.+| +|||+||-....|| |--+..++|++..+++.-... ..+.-.
T Consensus 126 glpT--s~Y~fa~s~--~e~~~a~~~iG-fPcvvKPvMSSSGk----Gqsvv~~~e~ve~AW~~A~~g------~R~~~~ 190 (394)
T COG0027 126 GLPT--SKYRFADSL--EELRAAVEKIG-FPCVVKPVMSSSGK----GQSVVRSPEDVEKAWEYAQQG------GRGGSG 190 (394)
T ss_pred CCCC--ccccccccH--HHHHHHHHHcC-CCeecccccccCCC----CceeecCHHHHHHHHHHHHhc------CCCCCC
Confidence 7654 487788764 69999999997 99999998876566 445667999999888766532 223346
Q ss_pred eEEEEeecCCCceEEE
Q 019240 104 TFIVEPFVPHNQEYYL 119 (344)
Q Consensus 104 ~vLVee~~~~~~Elyl 119 (344)
.|+||++++...|+-+
T Consensus 191 RVIVE~fv~fd~EiTl 206 (394)
T COG0027 191 RVIVEEFVKFDFEITL 206 (394)
T ss_pred cEEEEEEecceEEEEE
Confidence 7999999998777654
No 80
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.45 E-value=0.0011 Score=61.86 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..+++|+++ |||+| +...+.+. +++.+..++++ +|+|+||..-.+++ ||.+..+.+++.+..+
T Consensus 88 dK~~~~~~l~~~-----gi~~P--~t~~~~~~--~~~~~~~~~~~-~p~vvKP~~g~~g~----gv~~i~~~~~l~~~~~ 153 (277)
T TIGR00768 88 DKFLTSQLLAKA-----GLPQP--RTGLAGSP--EEALKLIEEIG-FPVVLKPVFGSWGR----LVSLARDKQAAETLLE 153 (277)
T ss_pred hHHHHHHHHHHC-----CCCCC--CEEEeCCH--HHHHHHHHhcC-CCEEEEECcCCCCC----ceEEEcCHHHHHHHHH
Confidence 345567888888 99888 87776653 56766677776 89999998765555 7888888888877665
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHN 114 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~ 114 (344)
.+... +. .-..++|||+++..
T Consensus 154 ~~~~~-----~~--~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 154 HFEQL-----NG--PQNLFYVQEYIKKP 174 (277)
T ss_pred HHHHh-----cc--cCCcEEEEeeecCC
Confidence 44211 10 11468999999954
No 81
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.27 E-value=0.0011 Score=69.18 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEE-eCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVAL-NLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a 85 (344)
+-..+|++|++. ||||| ++..+.+. +++.+.++++| |+||||..-.+|| ||.+ ..+.+++.++.
T Consensus 297 DK~~tk~lL~~a-----GIpVP--~~~~~~~~--~~~~~~~~~~G--~vVVKP~~G~~G~----Gv~v~v~~~~eL~~a~ 361 (547)
T TIGR03103 297 DKRLTRRLVSEA-----GLQVP--EQQLAGNG--EAVEAFLAEHG--AVVVKPVRGEQGK----GISVDVRTPDDLEAAI 361 (547)
T ss_pred CHHHHHHHHHHc-----CcCCC--CEEEECCH--HHHHHHHHHhC--CEEEEECCCCCCc----CeEEecCCHHHHHHHH
Confidence 456789999999 99988 88877653 57777777875 6999997654455 7877 47899888877
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEE
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVS 123 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~ 123 (344)
+..... + ..++||++++ +.|+.+.+.-
T Consensus 362 ~~a~~~-----~-----~~vlvEe~i~-G~d~Rv~Vig 388 (547)
T TIGR03103 362 AKARQF-----C-----DRVLLERYVP-GEDLRLVVID 388 (547)
T ss_pred HHHHhc-----C-----CcEEEEEecc-CCeEEEEEEC
Confidence 655321 1 3599999998 6788886553
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.17 E-value=0.0038 Score=61.61 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=68.3
Q ss_pred HHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccC--cccCcCeEEEeCCHHHHHHHHHHHhc
Q 019240 13 RLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFG--KRGKSGLVALNLDLAQVAEFVKGRLG 90 (344)
Q Consensus 13 ~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g--~Rgk~GgV~l~~s~eea~~~a~~~l~ 90 (344)
++|++. ||++| +... ++ .++. +||+||+.-..| +| |+.++.|++|....++++..
T Consensus 132 k~L~~a-----GI~~P--k~~~--~p---------~eId-~PVIVKp~~asG~~sr----G~f~a~s~eEl~~~a~~l~~ 188 (366)
T PRK13277 132 WLLEKA-----GIPYP--KLFK--DP---------EEID-RPVIVKLPEAKRRLER----GFFTASSYEDFYEKSEELIK 188 (366)
T ss_pred HHHHHc-----CCCCc--eeec--Cc---------cccC-ccEEEEECCCCCcccc----CeEeeCCHHHHHHHHHhhhh
Confidence 477777 99998 5432 22 2344 799999998777 67 88899999999988888764
Q ss_pred ccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-CceEEee
Q 019240 91 TEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFS 133 (344)
Q Consensus 91 ~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il~s 133 (344)
....+ ...+...+|||++. +.|+++-+..|+- +.+-++|
T Consensus 189 ~g~I~---~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~ 228 (366)
T PRK13277 189 AGVID---REDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLG 228 (366)
T ss_pred cCccc---ccccccceeEeccC-CCEEEEEEEEeccCCcEEEEE
Confidence 32221 11346789999998 7899999999974 6554444
No 83
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0015 Score=63.57 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred HHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHH-HHHHHHHHHh
Q 019240 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA-QVAEFVKGRL 89 (344)
Q Consensus 11 ak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e-ea~~~a~~~l 89 (344)
+-++|++. |+|+| ++.++.+++ +.+...++.+| +|+|+||-.-.+|| ||.+..+.+ ++.+....+.
T Consensus 123 ~~~~l~~~-----~ipvP--~T~i~~~~~-~~~~~~~~~~g-~pvVlKp~~Gs~G~----gV~~v~~~d~~l~~~~e~~~ 189 (318)
T COG0189 123 TTQLLAKA-----GIPVP--PTLITRDPD-EAAEFVAEHLG-FPVVLKPLDGSGGR----GVFLVEDADPELLSLLETLT 189 (318)
T ss_pred HHHHHHhc-----CCCCC--CEEEEcCHH-HHHHHHHHhcC-CCEEEeeCCCCCcc----ceEEecCCChhHHHHHHHHh
Confidence 45677777 99888 888887752 33444455554 89999998777778 899998887 7666665553
Q ss_pred cccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCc
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGC 128 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p 128 (344)
... -+.++|||+++....-+..+.+....|
T Consensus 190 ~~~---------~~~~ivQeyi~~~~~~~rrivv~~~~~ 219 (318)
T COG0189 190 QEG---------RKLIIVQEYIPKAKRDDRRVLVGGGEV 219 (318)
T ss_pred ccc---------cceEehhhhcCcccCCcEEEEEeCCEE
Confidence 321 135999999998776666666544333
No 84
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.87 E-value=0.042 Score=56.72 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
--.||.+..+. |+|+. +++.-...|.+++...++++| |||.+||-.-=||| |.+++.+++|+.++.+.
T Consensus 116 K~~AK~l~~~A-----gVp~V--PG~~g~~qd~~~~~~~A~eiG-yPVlIKAsaGGGGK----GMRvv~~~~e~~e~l~s 183 (645)
T COG4770 116 KIAAKKLAAEA-----GVPTV--PGYHGPIQDAAELVAIAEEIG-YPVLIKASAGGGGK----GMRVVETPEEFAEALES 183 (645)
T ss_pred HHHHHHHHHHc-----CCCcc--CCCCCcccCHHHHHHHHHhcC-CcEEEEeccCCCCC----ceEeecCHHHHHHHHHH
Confidence 35789999998 98765 666544345678999999997 99999987655555 88999999988877654
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCCCCHHHHHHHH
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLI 167 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~l~~~~a~~ll 167 (344)
-...... .- --..++||.++...+-+=+-+.-|.-|-++.++ +=---+.-.-.++..- .| .
T Consensus 184 arrEA~a-sF---Gddrv~iEkyl~~PRHIEiQV~aD~HGNvv~Lg-ERdCSlQRRhQKVIEE--AP------------a 244 (645)
T COG4770 184 ARREAKA-SF---GDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLG-ERDCSLQRRHQKVIEE--AP------------A 244 (645)
T ss_pred HHHHHHh-hc---CCceEehhhhcCCCceEEEEEEecCCCCEEEee-ccccchhhhcchhhhc--CC------------C
Confidence 4322111 11 124689999998777777888999988777665 1100010001111110 01 0
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhccCcceee
Q 019240 168 ATLPLEFRGKIGDFIMGVFAVFQDLDFSFIE 198 (344)
Q Consensus 168 ~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lE 198 (344)
-++....++++.+..+++++..--..+-.+|
T Consensus 245 P~l~~~~R~amg~aAv~~a~avgY~gAGTVE 275 (645)
T COG4770 245 PFLTEETREAMGEAAVAAAKAVGYVGAGTVE 275 (645)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcCceEE
Confidence 1344566777778888888775544443444
No 85
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.55 E-value=0.062 Score=54.90 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-..+|+++++. |+|+- +++--...+.+++.+.+.+|| |||.+||..--||| |-+++.+++|.++..+.
T Consensus 112 K~~sk~im~~A-----gVp~v--pG~~g~~qs~e~~~~~a~eIg-yPvMiKa~~GGGGk----GMria~~~~ef~~~~~~ 179 (670)
T KOG0238|consen 112 KSTSKQIMKAA-----GVPLV--PGYHGEDQSDEEAKKVAREIG-YPVMIKATAGGGGK----GMRIAWSEEEFEEGLES 179 (670)
T ss_pred hHHHHHHHHhc-----CCccc--cCcccccccHHHHHHHHHhcC-CcEEEEeccCCCCc----ceEeecChHHHHHHHHH
Confidence 35789999998 98865 554333333579999999997 99999987654555 88999999888776554
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
-...... . ---.++|+|.+++..+-+=+-+.-|.-|-.+-+.
T Consensus 180 ak~Ea~~--s--FGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ 221 (670)
T KOG0238|consen 180 AKQEAAK--S--FGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLG 221 (670)
T ss_pred HHHHHHh--h--cCcchhhHHHhccCCceEEEEEEecCCCcEEEec
Confidence 3222111 0 1246899999999877777888888877777665
No 86
>PRK06849 hypothetical protein; Provisional
Probab=96.18 E-value=0.032 Score=55.37 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-++-++++++. |||+| +....++. +++.+...+..++|+|+||..-.+++ ||.+..+.++. +
T Consensus 116 DK~~~~~~~~~~-----GipvP--~t~~v~~~--~~l~~~~~~~~~~P~vlKP~~~~~~~----~v~~~~~~~~l----~ 178 (389)
T PRK06849 116 NKWEFAEQARSL-----GLSVP--KTYLITDP--EAIRNFMFKTPHTPYVLKPIYSRFVR----RVDLLPKEAAL----K 178 (389)
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEeCCH--HHHHHHhhcCCCCcEEEEeCcccCCC----eEEEecCHHHh----c
Confidence 345567777887 99998 88877654 46666555542489999997644333 56665552211 1
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceE
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~i 130 (344)
.+ .. ..-..++|||+++ +.|+.+-... +.|.++
T Consensus 179 ~~---~~------~~~~~~ivQe~I~-G~e~~~~~~~-~~G~v~ 211 (389)
T PRK06849 179 EL---PI------SKDNPWVMQEFIQ-GKEYCSYSIV-RSGELR 211 (389)
T ss_pred cc---cc------CCCCCeEEEEEec-CCeEEEEEEE-ECCEEE
Confidence 11 11 1113489999999 5576554443 334443
No 87
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.29 Score=47.69 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCC--HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~--~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
.-...|.+++.. |+|++ +..+.+..+ .....+....++ +|++|||.-.- -.=|+..+.+.++.+.+
T Consensus 103 dk~~~K~~~~~~-----g~~~a--~~~~~~~~~~~~~~~e~~~~~l~-~p~~Vkp~~~g----SSvg~~~v~~~~d~~~~ 170 (317)
T COG1181 103 DKIVTKRLFKAE-----GLPVA--PYVALTRDEYSSVIVEEVEEGLG-FPLFVKPAREG----SSVGRSPVNVEGDLQSA 170 (317)
T ss_pred cHHHHHHHHHHC-----CCCcc--ceeeeecccchhHHHHHhhcccC-CCEEEEcCCcc----ceeeEEEeeeccchHHH
Confidence 345678888888 99887 666554321 012234445665 89999987541 01144445566666655
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
.+...... +.+++|+++. ++|+=+++.-+..
T Consensus 171 ~e~a~~~d----------~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 171 LELAFKYD----------RDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHHHHHhC----------CceeeccCCC-cceEEEEecCCcc
Confidence 44443321 3589999999 8999999998754
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.15 E-value=0.33 Score=52.23 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhcCCCcccCCCceEEeecC-CHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 10 DSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 10 qak~lL~~~~~~~~GI~vp~~~~~~~~~~-~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
.|+.+-.+. |+||- ++.- ..+ +.+|+.+-+++.| ||+.+||-.--||| |-++..+.+++.+++.+-
T Consensus 124 ~Ar~~A~~a-----gvPvi--pgt~-~~~~~~ee~~~fa~~~g-yPvmiKA~~GGGGR----GMR~vr~~~~l~~~~~~A 190 (1149)
T COG1038 124 KARNAAIKA-----GVPVI--PGTD-GPIETIEEALEFAEEYG-YPVMIKAAAGGGGR----GMRVVRSEADLAEAFERA 190 (1149)
T ss_pred HHHHHHHHc-----CCCcc--CCCC-CCcccHHHHHHHHHhcC-CcEEEEEccCCCcc----ceeeecCHHHHHHHHHHH
Confidence 455555555 88764 3311 111 2678999999997 99999998777778 788888888877776655
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCCCCHHHHHHHHc
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIA 168 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~l~~~~a~~ll~ 168 (344)
-......-| -..|.||.++...+-+=+-|.-|..|-+|=+- +=.-.|.-...++.. +.|...
T Consensus 191 ksEAkaAFG----~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLf-ERDCSvQRRhQKVVE--~APa~~----------- 252 (1149)
T COG1038 191 KSEAKAAFG----NDEVYVEKLVENPKHIEVQILGDTHGNVVHLF-ERDCSVQRRHQKVVE--VAPAPY----------- 252 (1149)
T ss_pred HHHHHHhcC----CCcEEhhhhhcCcceeEEEEeecCCCCEEEEe-ecccchhhccceeEE--ecCCCC-----------
Confidence 332211011 23588999988777777888888877665332 111112222233332 334333
Q ss_pred CCChHHHHHHHHHHHHHHHHh-----------hcc--Ccceeeeeeeee
Q 019240 169 TLPLEFRGKIGDFIMGVFAVF-----------QDL--DFSFIEMNPFTL 204 (344)
Q Consensus 169 g~~~~~~~~l~~~l~~L~~lf-----------~e~--d~~~lEINPL~v 204 (344)
+.+..++++++-.++|.+-. .+. ..-.+|+||=+.
T Consensus 253 -L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQ 300 (1149)
T COG1038 253 -LSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQ 300 (1149)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCcee
Confidence 33445556666666665532 222 245799999765
No 89
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=94.83 E-value=0.16 Score=49.85 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHhhhcCCC-------cccCCCceEEeecCCHHhHH---hhccccCCCcEEEEeccccCcccCcCeEEEeCCHHH
Q 019240 11 SKRLLKEHLKRLAG-------LDLQICSAQVTESTDFSELT---NKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (344)
Q Consensus 11 ak~lL~~~~~~~~G-------I~vp~~~~~~~~~~~~~ea~---~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (344)
.-++|++. | |++| +..++.+.+ .+. .+...++ +|+|+||.+-. |.++.-++.+..+.+.
T Consensus 111 ~~~~L~~~-----~~~~~~~~i~~P--~t~v~~~~~--~al~~~~~~~~l~-~P~V~KPl~g~-Gss~gh~m~lv~~~~~ 179 (328)
T PLN02941 111 MLQVVADL-----KLSDGYGSVGVP--KQLVVYDDE--SSIPDAVALAGLK-FPLVAKPLVAD-GSAKSHKMSLAYDQEG 179 (328)
T ss_pred HHHHHHHc-----CCcccCCCCCCC--CEEEEcCHH--HHHHHHHHHhcCC-CCEEEeecccC-CCccccceEEecCHHH
Confidence 44566666 6 6666 888887653 222 3345675 89999998764 4555557888878766
Q ss_pred HHHHHHHHhcccchhcCCCcceeeEEEEeecCCCc
Q 019240 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ 115 (344)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~ 115 (344)
+.. +. . -+++||+++++-
T Consensus 180 L~~---------l~--~------p~~lQEfVnh~g 197 (328)
T PLN02941 180 LSK---------LE--P------PLVLQEFVNHGG 197 (328)
T ss_pred HHh---------cC--C------cEEEEEecCCCC
Confidence 553 21 1 289999998753
No 90
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=94.75 E-value=0.9 Score=44.34 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCC--HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN 75 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~--~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~ 75 (344)
+....+|++. |||+| +..++.+.+ .+++.+... +..+||+||..-.+|| ||.+.
T Consensus 39 ~~t~~lL~~a-----glpvP--~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~Gr----GI~~i 94 (317)
T TIGR02291 39 LKTKIIAQAA-----GITVP--ELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGK----GILVI 94 (317)
T ss_pred HHHHHHHHHc-----CCCCC--CEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCcc----CeEEE
Confidence 4567788888 99998 877766552 223333322 2237999998877677 66665
No 91
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=93.82 E-value=0.29 Score=48.04 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccC--CCcEEEEeccccCcccCcCeEEEeC-CHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS--SSRLVVKPDMLFGKRGKSGLVALNL-DLAQVAEFV 85 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg--~~pvVvKaqv~~g~Rgk~GgV~l~~-s~eea~~~a 85 (344)
+.-.+.+++. |||+| +...+++. +|..++.++++ +.|+.|||-.-.|++ |.++-. +.++.....
T Consensus 109 ~~~y~~~~~~-----~ipvp--~~~~v~t~--~el~~a~~~l~~~~~~~CvKP~~g~gg~----GFr~l~~~~~~l~~l~ 175 (329)
T PF15632_consen 109 AAFYEFMEAN-----GIPVP--PYWRVRTA--DELKAAYEELRFPGQPLCVKPAVGIGGR----GFRVLDESRDELDALF 175 (329)
T ss_pred HHHHHHHHhC-----CCCCC--CEEEeCCH--HHHHHHHHhcCCCCceEEEecccCCCcc----eEEEEccCcchHHHhc
Confidence 3345566666 99888 88888765 57777766663 246999999888887 666653 555444332
Q ss_pred H---------HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceE
Q 019240 86 K---------GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (344)
Q Consensus 86 ~---------~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~i 130 (344)
. +++ ..+ . .......++|.|+++ +.|+.|=+..++ |.++
T Consensus 176 ~~~~~~i~~~~~~-~~l--~-~~~~~~~llvMeyL~-G~EySVD~l~~~-G~vi 223 (329)
T PF15632_consen 176 EPDSRRISLDELL-AAL--Q-RSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVI 223 (329)
T ss_pred CCCcceeCHHHHH-HHH--h-ccCCCCCcEEecCCC-CCeEEEEEEecC-CEEE
Confidence 2 000 001 0 113456799999999 789999888877 5454
No 92
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=93.07 E-value=0.31 Score=47.31 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
|..+|+-+-+..+|..-|||++| + ..++| +| +. .||.||.+-.-|+| |-.++.|++|..+.+
T Consensus 118 lLrwE~~~~~~~~lLekAgi~~P--~--~~~~P--ee-------Id-r~VIVK~pgAkggR----GyFiA~s~eef~ek~ 179 (361)
T COG1759 118 LLRWEEDRKLEYKLLEKAGLRIP--K--KYKSP--EE-------ID-RPVIVKLPGAKGGR----GYFIASSPEEFYEKA 179 (361)
T ss_pred HhhhhcchhhHHHHHHHcCCCCC--c--ccCCh--HH-------cC-CceEEecCCccCCc----eEEEEcCHHHHHHHH
Confidence 44455544444444444599998 4 23333 34 34 69999987766666 888899999999999
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
++++.....+ ..-++...+||++- +.-+|+-....+-.
T Consensus 180 e~l~~~gvi~---~edlkna~IeEYv~-G~~f~~~yFyS~i~ 217 (361)
T COG1759 180 ERLLKRGVIT---EEDLKNARIEEYVV-GAPFYFHYFYSPIK 217 (361)
T ss_pred HHHHHcCCcc---hhhhhhceeeEEee-ccceeeeeeecccc
Confidence 9998866542 12356788999887 56777777776653
No 93
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=93.06 E-value=3.1 Score=44.32 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=97.0
Q ss_pred HHHHHHHhhhcCCCcccC-CCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHh
Q 019240 11 SKRLLKEHLKRLAGLDLQ-ICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (344)
Q Consensus 11 ak~lL~~~~~~~~GI~vp-~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (344)
|+.+--+. |+|+. -.++-+. ..+||.+-+++.| +|+++|+-.--||| |.++..+.|+++++.++-.
T Consensus 151 AR~~Ai~a-----gVpvVPGTpgPit---t~~EA~eF~k~yG-~PvI~KAAyGGGGR----GmRvVr~~e~vee~f~Ra~ 217 (1176)
T KOG0369|consen 151 ARAIAIEA-----GVPVVPGTPGPIT---TVEEALEFVKEYG-LPVIIKAAYGGGGR----GMRVVRSGEDVEEAFQRAY 217 (1176)
T ss_pred HHHHHHHc-----CCCccCCCCCCcc---cHHHHHHHHHhcC-CcEEEeecccCCCc----ceEEeechhhHHHHHHHHH
Confidence 44444454 88753 2222232 2579999898987 89999998877778 7888888888888877765
Q ss_pred cccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCCCCHHHHHHHHcC
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIAT 169 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~l~~~~a~~ll~g 169 (344)
...+..-|. | .+.||.++...+-+-+-+.-|..|-++=+- +-.-.+.....++.. +.|. ..
T Consensus 218 SEA~aaFGn-G---~~FvEkF~ekPrHIEvQllgD~~GNvvHLy-ERDCSvQRRHQKVVE--iAPA------------~~ 278 (1176)
T KOG0369|consen 218 SEALAAFGN-G---TLFVEKFLEKPRHIEVQLLGDKHGNVVHLY-ERDCSVQRRHQKVVE--IAPA------------KT 278 (1176)
T ss_pred HHHHHhcCC-c---eeeHHhhhcCcceeEEEEecccCCCEEEEe-ecccchhhhhcceeE--eccc------------cc
Confidence 544321121 2 478899998777666777777776665432 111112211223322 2332 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh-----------cc--Ccceeeeeeeee
Q 019240 170 LPLEFRGKIGDFIMGVFAVFQ-----------DL--DFSFIEMNPFTL 204 (344)
Q Consensus 170 ~~~~~~~~l~~~l~~L~~lf~-----------e~--d~~~lEINPL~v 204 (344)
+++.-++++..-.++|.+-.- +. .--.+||||=+.
T Consensus 279 Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQ 326 (1176)
T KOG0369|consen 279 LPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQ 326 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCcee
Confidence 555556666666666666432 11 123589999554
No 94
>PRK12458 glutathione synthetase; Provisional
Probab=90.97 E-value=0.82 Score=44.87 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=42.3
Q ss_pred cccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHH--HHHHHHHHhcccchhcCCCcce
Q 019240 25 LDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ--VAEFVKGRLGTEVEMGGCKGPI 102 (344)
Q Consensus 25 I~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee--a~~~a~~~l~~~~~~~g~~~~v 102 (344)
+++| +..++.+ .+++.+..++.++.|+|+||..-.||| ||.+..+.++ +....+.+.. .
T Consensus 139 ~~vP--~T~v~~~--~~~~~~~~~~~~~~pvVvKPl~G~gG~----gV~~v~~~~~~~~~~ile~~~~------~----- 199 (338)
T PRK12458 139 EVRP--TTHISRN--KEYIREFLEESPGDKMILKPLQGSGGQ----GVFLIEKSAQSNLNQILEFYSG------D----- 199 (338)
T ss_pred CCCC--CEEEeCC--HHHHHHHHHHcCCCeEEEEECCCCCcc----CeEEEecCChhhHHHHHHHHhh------C-----
Confidence 3455 7777654 356666666675445999998877777 7766643332 2223222211 0
Q ss_pred eeEEEEeecCC
Q 019240 103 TTFIVEPFVPH 113 (344)
Q Consensus 103 ~~vLVee~~~~ 113 (344)
..+++||+++.
T Consensus 200 ~~~ivQeyI~~ 210 (338)
T PRK12458 200 GYVIAQEYLPG 210 (338)
T ss_pred CCEEEEEcccC
Confidence 24899999984
No 95
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=90.69 E-value=0.44 Score=41.47 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+...++|++. |||+| ........+ .. .+|+|+||.--.|+. ||.+..+.++......
T Consensus 4 K~~~~~~L~~~-----gi~~P--~~~~~~~~~---------~~-~~~~viKp~~G~Gg~----~i~~~~~~~~~~~~~~- 61 (161)
T PF02655_consen 4 KLKTYKFLKEL-----GIPVP--TTLRDSEPE---------PI-DGPWVIKPRDGAGGE----GIRIVDSEDELEEFLN- 61 (161)
T ss_dssp HHHHHHHHTTT------S----------EESS------------SSSEEEEESS-----------B--SS--TTE-----
T ss_pred HHHHHHHHHcc-----CCCCC--Ccccccccc---------cc-CCcEEEEeCCCCCCC----CeEEECCchhhccccc-
Confidence 35667888888 99988 322222111 11 379999997655544 5666666654332211
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCc
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGC 128 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p 128 (344)
...++||++. +.++.+++..+..+.
T Consensus 62 ---------------~~~i~Qe~i~-G~~~Sv~~l~~~~~~ 86 (161)
T PF02655_consen 62 ---------------KLRIVQEFIE-GEPYSVSFLASGGGA 86 (161)
T ss_dssp ------------------EEEE----SEEEEEEEEE-SSSE
T ss_pred ---------------cceEEeeeeC-CEEeEEEEEEeCCce
Confidence 1128999998 789999998887643
No 96
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=90.68 E-value=0.76 Score=44.37 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=53.6
Q ss_pred CcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcC--eEEEeCCHHHHHHHHHHHhcccchhcCCCcc
Q 019240 24 GLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSG--LVALNLDLAQVAEFVKGRLGTEVEMGGCKGP 101 (344)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~G--gV~l~~s~eea~~~a~~~l~~~~~~~g~~~~ 101 (344)
|+|+| +.+.++|. +...+.++- +|+++||-.-. +++--+ -+..+.+.||.+.+.-...+. + +
T Consensus 126 gl~~P--~Ty~v~S~----~d~~~~el~-FPvILKP~mgg-~~~~~araKa~~a~d~ee~k~a~~~a~ee-i---g---- 189 (415)
T COG3919 126 GLPYP--KTYLVNSE----IDTLVDELT-FPVILKPGMGG-SVHFEARAKAFTAADNEEMKLALHRAYEE-I---G---- 189 (415)
T ss_pred CCCCc--ceEEecch----hhhhhhhee-eeEEecCCCCC-cceeehhhheeeccCHHHHHHHHHHHHHh-c---C----
Confidence 88887 88887753 333344564 89999987531 111111 133345666666554333221 1 2
Q ss_pred eeeEEEEeecCCCce--EEEEEEEcCCCceEEee
Q 019240 102 ITTFIVEPFVPHNQE--YYLSIVSDRLGCTISFS 133 (344)
Q Consensus 102 v~~vLVee~~~~~~E--lylgi~~Dr~~p~il~s 133 (344)
...++||+|+|++.| +......|...|+.+|.
T Consensus 190 pDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeft 223 (415)
T COG3919 190 PDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFT 223 (415)
T ss_pred CCceEEEEecCCCCcccchHHHHHhCCCchhhhh
Confidence 357999999998765 33344455555665553
No 97
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=84.93 E-value=9.2 Score=44.28 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=61.2
Q ss_pred HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEE
Q 019240 40 FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (344)
Q Consensus 40 ~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elyl 119 (344)
++|..++++.+| +|+.+||----||| |++-+.+.|+.....++..+.. |+.+ +.|-+-+...+-+=+
T Consensus 228 ~eegLeaae~IG-fPvMIKASEGGGGK----GIRkv~n~ddF~~lf~qv~~Ev-----PGSP---IFlMK~a~~ARHlEV 294 (2196)
T KOG0368|consen 228 VEEGLEAAEKIG-FPVMIKASEGGGGK----GIRKVENEDDFKALFKQVQNEV-----PGSP---IFLMKLADQARHLEV 294 (2196)
T ss_pred HHHHHHHHHhcC-CceEEEeccCCCCc----ceeeccchHHHHHHHHHHHhhC-----CCCc---eeeeecccCcceeee
Confidence 568889999997 99999987544555 8999999999998888876543 3333 455566667777778
Q ss_pred EEEEcCCCceEEee
Q 019240 120 SIVSDRLGCTISFS 133 (344)
Q Consensus 120 gi~~Dr~~p~il~s 133 (344)
-+..|.-|-+|.+.
T Consensus 295 QlLaDqYGn~IsLf 308 (2196)
T KOG0368|consen 295 QLLADQYGNVISLF 308 (2196)
T ss_pred ehhhhhcCCEeEee
Confidence 88999888776554
No 98
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=78.87 E-value=6.7 Score=37.92 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=42.6
Q ss_pred ccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe-CCHHHHHHHHHHHhcccchhcCCCcceee
Q 019240 26 DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITT 104 (344)
Q Consensus 26 ~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~~~l~~~~~~~g~~~~v~~ 104 (344)
++| +..++.+ .+++.+..++.+ |+|+||..-.+|+ ||... .+..+..... +.+.. . + -..
T Consensus 133 ~vP--~T~v~~~--~~~~~~~~~~~g--~vVvKPl~G~~G~----gv~~v~~~~~~~~~~~-~~~~~-~---~----~~~ 193 (312)
T TIGR01380 133 VIP--PTLVTRD--KAEIRAFLAEHG--DIVLKPLDGMGGE----GIFRLDPGDPNFNSIL-ETMTQ-R---G----REP 193 (312)
T ss_pred CCC--CEEEeCC--HHHHHHHHHHcC--CEEEEECCCCCCc----eEEEEcCCCccHHHHH-HHHHh-c---c----CCc
Confidence 455 7777654 356666666653 8999999876666 66644 3222222221 22110 0 1 135
Q ss_pred EEEEeecCC--CceEEE
Q 019240 105 FIVEPFVPH--NQEYYL 119 (344)
Q Consensus 105 vLVee~~~~--~~Elyl 119 (344)
+++||+++. ..++-+
T Consensus 194 ~~vQ~yI~~~~~~D~Rv 210 (312)
T TIGR01380 194 VMAQRYLPEIKEGDKRI 210 (312)
T ss_pred EEEEeccccccCCCEEE
Confidence 999999983 345554
No 99
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=76.74 E-value=5.9 Score=33.86 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=43.7
Q ss_pred CcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHHHHHHhcccCccEEEEe
Q 019240 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 270 G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
|+|+.+..-++++...++.... .|=-..-|.-+|..+.- .+.+.++.+.+||..+.+++.
T Consensus 2 G~valisQSG~~~~~~~~~~~~--~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly 61 (138)
T PF13607_consen 2 GGVALISQSGALGTAILDWAQD--RGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLY 61 (138)
T ss_dssp -SEEEEES-HHHHHHHHHHHHH--TT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHH--cCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEE
Confidence 8999999999999999999998 44457778888888866 788999999999999987654
No 100
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=73.46 E-value=9.7 Score=36.92 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=52.8
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCC--CCHHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~--a~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+|+.+.--+++++..++..... |---.-+.-+|+. +.. ++...++.+.+||..+.+++.
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~--giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~ly 212 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAV--GLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIILI 212 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHc--CCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEEE
Confidence 799999999999999999999984 4458888899998 765 688899999999999987654
No 101
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=71.77 E-value=11 Score=36.30 Aligned_cols=63 Identities=6% Similarity=0.022 Sum_probs=52.9
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEee
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLFF 333 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~~ 333 (344)
.|+|+.+.--++++++.+|..... |---.-|.-+|+.+. .-+....++.+.+||+.+.+++..
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~--giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lyl 206 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKA--GFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIG 206 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHc--CCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence 799999999999999999999984 445778999999853 137788899999999999876643
No 102
>PRK05246 glutathione synthetase; Provisional
Probab=71.46 E-value=13 Score=35.90 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred ccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe-CCHHHHHHHHHHHhcccchhcCCCcceee
Q 019240 26 DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITT 104 (344)
Q Consensus 26 ~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~~~l~~~~~~~g~~~~v~~ 104 (344)
++| +..++.+ .+++.+..++. +|+|+||..-.+|| ||.+. .+..+..... +.+.. . + -..
T Consensus 134 ~vP--~T~~~~~--~~~~~~~~~~~--~~vVlKP~~G~~G~----gV~~i~~~~~~~~~~~-~~l~~-~---~----~~~ 194 (316)
T PRK05246 134 LMP--PTLVTRD--KAEIRAFRAEH--GDIILKPLDGMGGA----GIFRVKADDPNLGSIL-ETLTE-H---G----REP 194 (316)
T ss_pred cCC--CEEEeCC--HHHHHHHHHHC--CCEEEEECCCCCcc----ceEEEeCCCccHHHHH-HHHHH-c---c----CCe
Confidence 455 7777654 34666666665 38999999877677 67665 3333332222 22211 0 1 135
Q ss_pred EEEEeecCC
Q 019240 105 FIVEPFVPH 113 (344)
Q Consensus 105 vLVee~~~~ 113 (344)
+++|++++.
T Consensus 195 ~lvQ~~I~~ 203 (316)
T PRK05246 195 VMAQRYLPE 203 (316)
T ss_pred EEEEecccc
Confidence 999999975
No 103
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=70.59 E-value=9.8 Score=37.20 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCC-CHHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a-~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++|+...++.+...|. --..+.-+||.+ ..-+....++.+.+||..+.++++
T Consensus 169 ~G~VgiVSqSGtl~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~ 231 (317)
T PTZ00187 169 KGKIGIVSRSGTLTYEAVAQTTAVGL--GQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILI 231 (317)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC--CEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEE
Confidence 79999999999999999999999543 477888899987 233678899999999999987654
No 104
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=69.65 E-value=1.4 Score=48.34 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=63.2
Q ss_pred ceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEee
Q 019240 31 SAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPF 110 (344)
Q Consensus 31 ~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~ 110 (344)
+...+++ .+||.++++++| +||++.+--..||= |--++.|.+|..+.+..-+.. -.++|||..
T Consensus 515 ~s~a~~s--ie~al~aae~l~-ypvivRaayalggl----gSgfa~n~eeL~~l~~~a~a~----------s~QilvekS 577 (1435)
T KOG0370|consen 515 PSEAVST--IEEALEAAERLG-YPVIVRAAYALGGL----GSGFANNEEELQDLAAQALAL----------SPQILVEKS 577 (1435)
T ss_pred chhhHhH--HHHHHHHHHhcC-cHHHHHHHHHhcCc----cccccccHHHHHHHHhhcccc----------Cceeeehhh
Confidence 5444444 469999999997 99999877665554 345678889988776655442 247999999
Q ss_pred cCCCceEEEEEEEcCCCceEEee
Q 019240 111 VPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 111 ~~~~~Elylgi~~Dr~~p~il~s 133 (344)
+.+-+|.=.-+.+|..+-+|.++
T Consensus 578 lkGwkevEyevvrDa~~nciTvc 600 (1435)
T KOG0370|consen 578 LKGWKEVEYEVVRDAYDNCITVC 600 (1435)
T ss_pred hccccceEEEEEeccccchhhhc
Confidence 99878888888999876565554
No 105
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=63.13 E-value=20 Score=34.53 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+|+.+.--++++.+.+|.... .|---..|.-+|..+. .=.....++.+.+||+.+.+++.
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~--~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~ly 207 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTD--LGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMI 207 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHH--cCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEE
Confidence 79999999999999999999998 4445788999998853 12677888999999999987654
No 106
>PRK06091 membrane protein FdrA; Validated
Probab=62.09 E-value=18 Score=38.08 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=53.2
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCC-----CCHHHHHHHHHHHhcccCccEEEEee
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA-----PNEEEVLQYARVVIDVRDFTNFGLFF 333 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~-----a~~~~v~~a~~~il~d~~v~~~~~~~ 333 (344)
.|+||++.--++++...++.+.. .|.-...+.-+||. +..-.+..+++.+.+||..+.++++.
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~--~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~ 260 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIAL--AGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVS 260 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--cCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence 89999999999999999999999 55668899999987 21225788899999999999988765
No 107
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=53.00 E-value=28 Score=35.45 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHHHHHHhcccCccEEEEee
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFF 333 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a~~~il~d~~v~~~~~~~ 333 (344)
.|+|+++.--++++...+|.... .|--..-|.-+|+.+.- +....++.+.+||+.+.+++..
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~--~g~g~s~~vs~Gn~~d~-~~~d~l~~l~~D~~t~~I~ly~ 211 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEK--NGVGFSYFVSLGNKADI-DESDLLEYLADDPDTKVILLYL 211 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHh--cCCCcceEEECCchhhC-CHHHHHHHHhhCCCCCEEEEEe
Confidence 79999999999999999999988 45568889999998864 7788999999999999886653
No 108
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=52.49 E-value=33 Score=34.31 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=41.1
Q ss_pred Cc-EEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEE
Q 019240 53 SR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (344)
Q Consensus 53 ~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Ely 118 (344)
.| |+|||+.-+=|- ||..+.+.+|+...-++-..+...++. .-.|+.|+|||-+. ..|.+
T Consensus 257 ~PfViVKADaGTYGM----GImtv~~~~ev~~LNrK~RnKM~~~Ke-g~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 257 QPYVIVKADAGTYGM----GIMTATSGEEVLGLNRKERNKMAKVKE-GLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred CCeEEEEcCCCCCCc----eEEEecCHHHHHHhhhhhhhhcccccC-CCccceEEEecCcc-eeeee
Confidence 45 568888643233 899999999998876666555433222 23899999999987 45654
No 109
>PLN02522 ATP citrate (pro-S)-lyase
Probab=51.30 E-value=32 Score=36.69 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=51.4
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++|+...+|.+...|. --.-+.-+||.+. --+....++.+.+||..+.++++
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~Ivly 229 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTD--GIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVL 229 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCC--CeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 79999999999999999999998554 3667788888874 23567888899999999988665
No 110
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=49.20 E-value=26 Score=29.20 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=28.7
Q ss_pred cEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHHH
Q 019240 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA 317 (344)
Q Consensus 271 ~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a~ 317 (344)
.||+=-.|||.|++. +|..+|+ ++++-+---|..+++|++.+..
T Consensus 48 Y~GACnTGgGgALam--AIallG~-~~C~Tvs~pg~~~~eeeI~~~v 91 (117)
T PF10941_consen 48 YLGACNTGGGGALAM--AIALLGY-GKCATVSMPGKIPSEEEIRKEV 91 (117)
T ss_pred eEeecCCCccHHHHH--HHHHhCc-cceeEeecCCCCCCHHHHHHHH
Confidence 355444444433333 2344454 6899999999999999998864
No 111
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=45.47 E-value=28 Score=30.95 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=35.1
Q ss_pred CCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe-CCHHHHHHHHHHHhcccchhcCCCc
Q 019240 22 LAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKG 100 (344)
Q Consensus 22 ~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~~~l~~~~~~~g~~~ 100 (344)
+|.+ +| +..++++ .++..+..++-+ -+||||-.-.||| ||..- .+........+.+... +
T Consensus 8 f~~~-~P--~T~vs~~--~~~i~~f~~~~~--~~VlKPl~g~gG~----gV~~i~~~~~n~~~i~e~~~~~-----~--- 68 (173)
T PF02955_consen 8 FPEL-IP--PTLVSRD--KEEIRAFIEEHG--DIVLKPLDGMGGR----GVFRISRDDPNLNSILETLTKN-----G--- 68 (173)
T ss_dssp GCCC-S----EEEES---HHHHHHHHHHHS--SEEEEESS--TTT----T-EEE-TT-TTHHHHHHHHTTT-----T---
T ss_pred cccc-Cc--CEEEECC--HHHHHHHHHHCC--CEEEEECCCCCCc----CEEEEcCCCCCHHHHHHHHHhc-----C---
Confidence 3443 45 7777654 456666665654 3999999988887 55554 4422233333323211 1
Q ss_pred ceeeEEEEeecC
Q 019240 101 PITTFIVEPFVP 112 (344)
Q Consensus 101 ~v~~vLVee~~~ 112 (344)
-..+++|++++
T Consensus 69 -~~~~mvQ~flp 79 (173)
T PF02955_consen 69 -ERPVMVQPFLP 79 (173)
T ss_dssp -TS-EEEEE--G
T ss_pred -CccEEEEeccc
Confidence 14699999998
No 112
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=34.94 E-value=74 Score=31.00 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=33.6
Q ss_pred CcccCCCceEEeecCCHHhHHhh--ccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcc
Q 019240 24 GLDLQICSAQVTESTDFSELTNK--EPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGP 101 (344)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~a--a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~ 101 (344)
.|.+| +..+..+. .++..+. ...+. +|+++||++..| ..++--..+.-+.+...+ +. .|
T Consensus 112 ~i~~P--~~v~i~~~-~~~~~~~l~~agL~-fPlI~KPlvA~G-sa~SH~Maivf~~~gL~~---------L~--~P--- 172 (307)
T PF05770_consen 112 RIRVP--KFVVINSD-AESLPELLKEAGLK-FPLICKPLVACG-SADSHKMAIVFNEEGLKD---------LK--PP--- 172 (307)
T ss_dssp TEE-S---EEEESSS-HCCHHHHHHCTTS--SSEEEEESB-SS-TSCCCEEEEE-SGGGGTT-------------SS---
T ss_pred cccCC--ceEEEcCC-HHHHHHHHHHCCCc-ccEEeeehhhcC-CccceEEEEEECHHHHhh---------cC--CC---
Confidence 56666 76666532 2222222 34554 899999999764 444544555555544321 21 12
Q ss_pred eeeEEEEeecCCCc
Q 019240 102 ITTFIVEPFVPHNQ 115 (344)
Q Consensus 102 v~~vLVee~~~~~~ 115 (344)
+++||+++|+-
T Consensus 173 ---~VlQeFVNHgg 183 (307)
T PF05770_consen 173 ---CVLQEFVNHGG 183 (307)
T ss_dssp ---EEEEE----TT
T ss_pred ---EEEEEeecCCC
Confidence 58999999874
No 113
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=34.46 E-value=1.7e+02 Score=30.06 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=37.3
Q ss_pred CcEEEEeccccCcccCcCeEEEe--CCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEE
Q 019240 53 SRLVVKPDMLFGKRGKSGLVALN--LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (344)
Q Consensus 53 ~pvVvKaqv~~g~Rgk~GgV~l~--~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elyl 119 (344)
-.+|+||--..|++ ||.++ .++++=+++.++.++ +.+++||++...+|-+.
T Consensus 339 ~~lVLKP~D~Ygg~----GV~~G~e~~~eeW~~~l~~a~~------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 339 DRLVLKPNDEYGGK----GVYIGWETSPEEWEAALEEAAR------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred hcEEeccccccCCC----CeEECCcCCHHHHHHHHHHHhc------------CCcEEEEEecCCccccc
Confidence 47999998887777 89998 477766666555433 25899999987666666
No 114
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=34.08 E-value=39 Score=33.91 Aligned_cols=58 Identities=12% Similarity=-0.042 Sum_probs=29.0
Q ss_pred EEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEE
Q 019240 55 LVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (344)
Q Consensus 55 vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Ely 118 (344)
|+|||+.-+-|- ||..+.+.+|+...-++-..+....+ .+-.|+.|+|||-+. ..|.+
T Consensus 263 V~VKAD~GTYGM----GImtV~~~~ev~~LNrK~RnKM~~~K-eg~~v~~VIIQEGV~-T~E~~ 320 (404)
T PF08886_consen 263 VFVKADAGTYGM----GIMTVKSGDEVLGLNRKQRNKMSVIK-EGLEVSEVIIQEGVY-TFERF 320 (404)
T ss_dssp EEEEEE-GGG-E----EEEEESSGGGGSS--HHHHHHHH-SS-SSS---EEEEEE------EEE
T ss_pred EEEEcCCCCCCc----eEEEecCHHHHHHHhHHHhhhhhhhc-CCCccceeEEecCcc-hhhhh
Confidence 678998643333 89999999998554444433332211 123799999999987 44543
No 115
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=32.78 E-value=83 Score=30.36 Aligned_cols=71 Identities=8% Similarity=0.100 Sum_probs=47.2
Q ss_pred cCCc--EEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 260 SLKF--TVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 260 ~~~l--~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
+.++ .++-..|+||++.-=+.|+-=..-.+..+|.|= .--.=+||.+- -.....+++++..||.-+++|+|
T Consensus 134 kiGimp~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~Gq--S~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi 207 (293)
T COG0074 134 KIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQ--STAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI 207 (293)
T ss_pred eeeechhhhccCCceEEEecCcchHHHHHHHHHhcCCce--EEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEE
Confidence 5566 566679999999988888887778888765321 11123333321 23456678888888888887765
No 116
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=31.06 E-value=1e+02 Score=29.42 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEee------c---CCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEe
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTE------S---TDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN 75 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~------~---~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~ 75 (344)
..-+++++++ |||+| +..... . .+.++..+........++|+||..-.+|+ ||.+.
T Consensus 28 ~~~~~l~~~~-----gi~vP--~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~----Gi~~i 92 (285)
T PF14397_consen 28 LLFKQLFRDY-----GIPVP--EAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGK----GILVI 92 (285)
T ss_pred HHHHHHHHHh-----cCCCC--ceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCcc----CEEEE
Confidence 4567888888 99998 422110 0 12234444444432268999997655555 55554
No 117
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.50 E-value=1.2e+02 Score=30.15 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=48.6
Q ss_pred HHhHHhhcccc-CCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEE
Q 019240 40 FSELTNKEPWL-SSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (344)
Q Consensus 40 ~~ea~~aa~~l-g~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Ely 118 (344)
.++|..++..| ...||=+|+---+||| |-.+..+.+|...+...+-...+. -.++.+|+-+..-.=+.
T Consensus 123 ~~DA~~A~~~LL~~G~VRlKp~~a~gG~----GQ~vv~~~~~Ld~~L~~~~~~~l~-------~~GlVLE~~L~~~~T~S 191 (355)
T PF11379_consen 123 REDARRAARRLLRDGPVRLKPVHATGGR----GQQVVADADELDAALAALDDAELA-------RHGLVLEEDLEEVVTYS 191 (355)
T ss_pred HHHHHHHHHHHhccCCeeeccCcccCCC----CceEecCHHHHHHHHHcCCHHHHH-------hCCEEEecccCCCceee
Confidence 35787777776 3469999998888888 445667888888887766554442 24677787776544444
Q ss_pred EEE
Q 019240 119 LSI 121 (344)
Q Consensus 119 lgi 121 (344)
||-
T Consensus 192 VGq 194 (355)
T PF11379_consen 192 VGQ 194 (355)
T ss_pred EEE
Confidence 543
No 118
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=27.69 E-value=44 Score=31.63 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=23.5
Q ss_pred ccCCCcceeeecCCCCCHHHHHHHHHHHhcccCccEEEEe
Q 019240 293 GYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 293 g~gg~pANFlD~GG~a~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
|.||+|.| -.....++++.|+||.-+|+++|
T Consensus 208 GiGGDpFn---------GT~FID~L~vFl~D~~t~GIili 238 (329)
T KOG1255|consen 208 GIGGDPFN---------GTNFIDCLEVFLEDPETEGIILI 238 (329)
T ss_pred eecCCCCC---------CccHHHHHHHHhcCcccceEEEE
Confidence 35777776 23567789999999999998776
No 119
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=26.03 E-value=92 Score=24.16 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHhhhcCCCcc
Q 019240 6 IREYDSKRLLKEHLKRLAGLD 26 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~ 26 (344)
|+|.|+|++|++| ||.
T Consensus 21 ls~eE~~~vLk~l-----~i~ 36 (80)
T COG2012 21 LSEEEAKEVLKEL-----GIE 36 (80)
T ss_pred cCHHHHHHHHHHh-----CCC
Confidence 7899999999999 885
No 120
>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]
Probab=23.18 E-value=1.2e+02 Score=28.72 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=40.1
Q ss_pred cEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCC----CCHHHHHHHHHHHhcccCccEEEE
Q 019240 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA----PNEEEVLQYARVVIDVRDFTNFGL 331 (344)
Q Consensus 271 ~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~----a~~~~v~~a~~~il~d~~v~~~~~ 331 (344)
+||+++.=+|-+|+.|=+--.+|.||-..| |-. .--++....+--+|..|.|+|++|
T Consensus 178 R~GvVlG~gGGa~~~M~lpF~~g~GGPlGs----G~Q~fpWIHv~DL~~li~~ale~~~v~GViN 238 (315)
T KOG3019|consen 178 RIGVVLGKGGGALAMMILPFQMGAGGPLGS----GQQWFPWIHVDDLVNLIYEALENPSVKGVIN 238 (315)
T ss_pred EEeEEEecCCcchhhhhhhhhhccCCcCCC----CCeeeeeeehHHHHHHHHHHHhcCCCCceec
Confidence 688887777778988877767777776443 111 124566667777788899998887
No 121
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=20.49 E-value=87 Score=35.25 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=53.4
Q ss_pred HHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecc-ccCcccCcCeEEEe--CCHHHHHHHHHHHh
Q 019240 13 RLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDM-LFGKRGKSGLVALN--LDLAQVAEFVKGRL 89 (344)
Q Consensus 13 ~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv-~~g~Rgk~GgV~l~--~s~eea~~~a~~~l 89 (344)
++|.+. ||.-| .+.-.++ .+||.+-+++.| |||.|.|-. +. |-..+ .+.++.+...++-.
T Consensus 1039 ~~Ld~i-----~v~Qp--~Wkelt~--~~eA~~F~~~Vg-YP~lvRPSYVLS-------GaAMnv~~~~~dl~~~L~~A~ 1101 (1435)
T KOG0370|consen 1039 RMLDSI-----GVDQP--AWKELTS--LEEAKKFAEKVG-YPVLVRPSYVLS-------GAAMNVVYSESDLKSYLEQAS 1101 (1435)
T ss_pred HHHHHc-----CCCch--hhhhhcc--HHHHHHHHHhcC-CceEecccceec-------chhhhhhhcHHHHHHHHHHHh
Confidence 566776 88877 5555544 569999999997 899999875 43 22222 46666655543331
Q ss_pred cccchhcCCCcceeeEEEEeecCCCceEEE
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~Elyl 119 (344)
. . .+=+-|.+.+++...+|+=+
T Consensus 1102 ~--v------s~dhPVVisKfie~AkEidv 1123 (1435)
T KOG0370|consen 1102 A--V------SPDHPVVISKFIEGAKEIDV 1123 (1435)
T ss_pred h--c------CCCCCEEhHHhhcccceech
Confidence 1 1 11234888999998899765
Done!