Query 019240
Match_columns 344
No_of_seqs 185 out of 1890
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 9.6E-88 3.3E-92 668.8 23.9 334 1-337 1-345 (425)
2 3pff_A ATP-citrate synthase; p 100.0 1.9E-84 6.5E-89 685.8 22.8 333 1-337 1-345 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 6.4E-77 2.2E-81 588.0 31.8 309 4-337 1-330 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 2.4E-76 8.1E-81 583.1 30.0 309 4-337 1-323 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 3.5E-74 1.2E-78 569.0 28.9 304 4-337 1-314 (397)
6 1wr2_A Hypothetical protein PH 100.0 3.5E-35 1.2E-39 270.7 17.4 204 1-221 15-237 (238)
7 2csu_A 457AA long hypothetical 99.2 7.1E-12 2.4E-16 125.7 6.2 173 127-332 150-376 (457)
8 4eg0_A D-alanine--D-alanine li 98.9 7.5E-08 2.6E-12 91.0 17.0 103 7-133 107-213 (317)
9 3ouz_A Biotin carboxylase; str 98.8 4.7E-08 1.6E-12 96.8 13.6 109 7-133 119-229 (446)
10 2cqy_A Propionyl-COA carboxyla 98.8 4E-10 1.4E-14 89.5 -1.9 99 5-121 6-106 (108)
11 4e4t_A Phosphoribosylaminoimid 98.7 9.1E-08 3.1E-12 94.6 13.9 100 7-133 133-237 (419)
12 3e5n_A D-alanine-D-alanine lig 98.7 3E-07 1E-11 89.9 16.8 101 7-130 159-261 (386)
13 3aw8_A PURK, phosphoribosylami 98.7 4.9E-08 1.7E-12 94.1 11.0 102 6-133 95-197 (369)
14 3i12_A D-alanine-D-alanine lig 98.7 4.1E-07 1.4E-11 88.1 16.9 98 6-126 139-238 (364)
15 1ehi_A LMDDL2, D-alanine:D-lac 98.7 5.1E-07 1.7E-11 87.8 17.3 98 7-126 135-234 (377)
16 3glk_A Acetyl-COA carboxylase 98.7 1.5E-07 5.2E-12 96.1 13.7 106 6-133 163-297 (540)
17 1a9x_A Carbamoyl phosphate syn 98.7 2.2E-07 7.7E-12 101.9 15.5 104 7-132 128-231 (1073)
18 3mjf_A Phosphoribosylamine--gl 98.7 8.1E-08 2.8E-12 95.2 11.0 101 7-126 107-207 (431)
19 3lp8_A Phosphoribosylamine-gly 98.7 1.1E-07 3.9E-12 94.4 12.0 102 7-127 123-224 (442)
20 3jrx_A Acetyl-COA carboxylase 98.7 2.2E-07 7.5E-12 95.8 14.4 105 7-133 180-313 (587)
21 3k5i_A Phosphoribosyl-aminoimi 98.6 7.8E-07 2.7E-11 87.3 15.9 97 7-127 123-220 (403)
22 3tqt_A D-alanine--D-alanine li 98.6 3.7E-07 1.3E-11 89.0 13.3 96 7-125 140-238 (372)
23 1vkz_A Phosphoribosylamine--gl 98.6 2.1E-07 7.3E-12 91.3 11.5 101 7-126 106-206 (412)
24 1w96_A ACC, acetyl-coenzyme A 98.6 4.3E-07 1.5E-11 92.8 13.6 106 7-132 173-302 (554)
25 3q2o_A Phosphoribosylaminoimid 98.6 2.4E-06 8.3E-11 82.9 17.8 101 6-132 111-212 (389)
26 2z04_A Phosphoribosylaminoimid 98.5 1.2E-07 4.3E-12 91.0 8.1 101 6-132 91-192 (365)
27 3se7_A VANA; alpha-beta struct 98.5 2.2E-06 7.5E-11 82.1 15.7 94 7-127 132-225 (346)
28 2dwc_A PH0318, 433AA long hypo 98.5 6.8E-07 2.3E-11 88.0 12.4 98 8-125 121-219 (433)
29 3n6r_A Propionyl-COA carboxyla 98.5 1.8E-07 6.3E-12 98.0 8.7 110 6-133 114-225 (681)
30 3ln6_A Glutathione biosynthesi 98.5 1.6E-07 5.5E-12 99.4 8.2 111 8-143 485-604 (750)
31 1a9x_A Carbamoyl phosphate syn 98.5 9.5E-07 3.3E-11 96.9 14.5 98 8-127 675-772 (1073)
32 3u9t_A MCC alpha, methylcroton 98.5 2.2E-07 7.4E-12 97.3 8.1 109 7-133 141-251 (675)
33 3orq_A N5-carboxyaminoimidazol 98.4 6.7E-07 2.3E-11 86.9 9.8 100 7-132 110-210 (377)
34 1ulz_A Pyruvate carboxylase N- 98.4 7.4E-07 2.5E-11 88.1 9.7 109 7-133 114-224 (451)
35 2qf7_A Pyruvate carboxylase pr 98.4 3.1E-07 1.1E-11 101.5 7.6 108 7-132 134-243 (1165)
36 2w70_A Biotin carboxylase; lig 98.4 1E-06 3.5E-11 87.0 10.2 109 7-133 115-226 (449)
37 2vpq_A Acetyl-COA carboxylase; 98.4 8.2E-07 2.8E-11 87.8 9.3 109 7-133 114-224 (451)
38 3hbl_A Pyruvate carboxylase; T 98.4 7.1E-07 2.4E-11 98.4 9.7 109 7-133 118-228 (1150)
39 2xcl_A Phosphoribosylamine--gl 98.4 1.2E-06 4.2E-11 85.7 10.5 101 7-126 102-202 (422)
40 3va7_A KLLA0E08119P; carboxyla 98.4 9.2E-07 3.2E-11 98.0 10.4 108 8-133 145-253 (1236)
41 2pvp_A D-alanine-D-alanine lig 98.4 3.7E-06 1.3E-10 81.6 13.4 94 7-123 149-243 (367)
42 3k3p_A D-alanine--D-alanine li 98.4 8.2E-06 2.8E-10 79.7 15.9 97 7-126 161-260 (383)
43 2yrx_A Phosphoribosylglycinami 98.4 1.3E-06 4.4E-11 86.6 10.2 101 7-126 123-223 (451)
44 2dzd_A Pyruvate carboxylase; b 98.3 1E-06 3.4E-11 87.5 9.1 108 6-131 119-228 (461)
45 1kjq_A GART 2, phosphoribosylg 98.3 7E-07 2.4E-11 86.3 7.7 100 8-127 113-213 (391)
46 2ip4_A PURD, phosphoribosylami 98.3 1.5E-06 5.1E-11 85.1 10.2 97 7-126 101-197 (417)
47 2yw2_A Phosphoribosylamine--gl 98.3 1.9E-06 6.6E-11 84.3 10.6 101 7-126 102-202 (424)
48 2qk4_A Trifunctional purine bi 98.3 2.4E-06 8.3E-11 84.6 10.2 101 7-126 128-229 (452)
49 3vmm_A Alanine-anticapsin liga 98.3 1.5E-05 5.3E-10 79.9 15.8 95 6-114 138-234 (474)
50 4fu0_A D-alanine--D-alanine li 98.3 8.8E-06 3E-10 78.3 13.2 97 7-126 139-236 (357)
51 4dim_A Phosphoribosylglycinami 98.2 2.8E-06 9.6E-11 82.5 9.3 95 7-124 109-203 (403)
52 3r5x_A D-alanine--D-alanine li 98.2 3E-06 1E-10 79.1 9.0 91 7-122 97-188 (307)
53 3eth_A Phosphoribosylaminoimid 98.2 2.7E-06 9.3E-11 82.4 7.7 95 8-132 80-177 (355)
54 1e4e_A Vancomycin/teicoplanin 98.1 1.3E-05 4.3E-10 76.6 10.5 94 7-127 132-225 (343)
55 3lwb_A D-alanine--D-alanine li 98.1 6.7E-06 2.3E-10 79.9 7.9 98 7-127 151-248 (373)
56 2i87_A D-alanine-D-alanine lig 98.1 1.7E-05 5.8E-10 76.3 10.6 97 7-126 129-230 (364)
57 3ln7_A Glutathione biosynthesi 98.0 8.4E-06 2.9E-10 86.3 8.5 92 9-125 491-587 (757)
58 3vot_A L-amino acid ligase, BL 98.0 1.1E-05 3.9E-10 78.9 8.9 101 8-125 113-214 (425)
59 2fb9_A D-alanine:D-alanine lig 98.0 4.1E-05 1.4E-09 72.5 11.8 93 7-126 118-210 (322)
60 2pn1_A Carbamoylphosphate synt 98.0 2.4E-05 8.1E-10 73.6 9.4 93 7-130 114-209 (331)
61 3ax6_A Phosphoribosylaminoimid 98.0 6.1E-06 2.1E-10 79.6 5.3 93 7-132 100-193 (380)
62 1iow_A DD-ligase, DDLB, D-ALA\ 98.0 2.8E-05 9.6E-10 72.0 9.7 90 7-122 96-193 (306)
63 1uc8_A LYSX, lysine biosynthes 97.8 7.6E-06 2.6E-10 74.7 2.7 94 7-122 88-184 (280)
64 2r7k_A 5-formaminoimidazole-4- 97.6 0.00011 3.7E-09 71.3 7.9 91 9-126 126-216 (361)
65 2r85_A PURP protein PF1517; AT 97.1 0.0014 4.8E-08 61.2 9.3 90 8-126 101-190 (334)
66 1z2n_X Inositol 1,3,4-trisphos 96.6 0.0039 1.3E-07 58.2 7.3 88 8-122 99-188 (324)
67 4ffl_A PYLC; amino acid, biosy 96.3 0.0085 2.9E-07 57.0 7.7 79 7-130 103-181 (363)
68 1i7n_A Synapsin II; synapse, p 96.2 0.016 5.5E-07 54.8 9.3 87 11-124 121-210 (309)
69 2p0a_A Synapsin-3, synapsin II 95.7 0.032 1.1E-06 53.6 8.7 87 11-124 138-227 (344)
70 1pk8_A RAT synapsin I; ATP bin 95.4 0.051 1.8E-06 53.5 9.1 89 11-124 233-322 (422)
71 2pbz_A Hypothetical protein; N 95.1 0.007 2.4E-07 57.6 1.8 84 11-131 102-186 (320)
72 2q7d_A Inositol-tetrakisphosph 94.6 0.051 1.7E-06 52.1 6.5 79 23-123 134-215 (346)
73 1gsa_A Glutathione synthetase; 94.2 0.043 1.5E-06 50.2 4.8 75 31-122 137-214 (316)
74 3df7_A Putative ATP-grAsp supe 92.0 0.23 7.8E-06 46.3 6.3 68 12-125 111-178 (305)
75 3dmy_A Protein FDRA; predicted 87.2 0.98 3.3E-05 45.1 6.7 60 269-331 249-334 (480)
76 3mwd_B ATP-citrate synthase; A 71.5 5.1 0.00017 38.0 5.6 65 269-336 168-236 (334)
77 3dmy_A Protein FDRA; predicted 67.3 11 0.00037 37.5 7.1 63 269-333 112-179 (480)
78 2yv1_A Succinyl-COA ligase [AD 60.4 13 0.00045 34.3 5.9 62 269-332 150-212 (294)
79 2fp4_A Succinyl-COA ligase [GD 58.7 11 0.00038 35.0 5.1 62 269-332 152-214 (305)
80 1oi7_A Succinyl-COA synthetase 57.9 13 0.00045 34.2 5.4 62 269-332 144-206 (288)
81 2yv2_A Succinyl-COA synthetase 55.5 15 0.00051 33.9 5.4 62 269-332 151-213 (297)
82 2csu_A 457AA long hypothetical 53.9 17 0.00057 35.7 5.7 60 270-332 150-209 (457)
83 3t7a_A Inositol pyrophosphate 52.1 7.5 0.00026 36.7 2.7 45 9-61 99-154 (330)
84 2nu8_A Succinyl-COA ligase [AD 50.1 17 0.00059 33.2 4.9 62 269-332 144-206 (288)
85 3pff_A ATP-citrate synthase; p 32.6 47 0.0016 35.3 5.3 62 269-332 654-716 (829)
86 3k1t_A Glutamate--cysteine lig 26.7 32 0.0011 33.4 2.6 60 53-118 277-337 (432)
87 2lqo_A Putative glutaredoxin R 26.5 1E+02 0.0034 23.0 5.0 68 9-92 18-86 (92)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=9.6e-88 Score=668.83 Aligned_cols=334 Identities=38% Similarity=0.688 Sum_probs=300.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecC-CHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHH
Q 019240 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA 79 (344)
Q Consensus 1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~-~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e 79 (344)
||++.++|||+|+||++|+++++.. +..+++.+++++ +++||.+++++||++|||||+|+++|||||+|||+++.|++
T Consensus 1 m~~k~i~Ey~~K~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~e 79 (425)
T 3mwd_A 1 MSAKAISEQTGKELLYKFICTTSAI-QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (425)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCB-CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhccccCCc-cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHH
Confidence 9999999999999999994443221 222246555554 68899999999986899999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhcCCCcceeeEEEEeecCC--CceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCC
Q 019240 80 QVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (344)
Q Consensus 80 ea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~--~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~ 157 (344)
|+++++++|+++.+.++.|.+++++||||+|+++ ++|||+|+++||.+|+|++|++|||+||+++|+..++|+++..+
T Consensus 80 ev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~ 159 (425)
T 3mwd_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (425)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccc
Confidence 9999999999998754456668999999999986 48999999999999999999999999999999877788888888
Q ss_pred CCHHHH-HHHHcCCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCceEEEeeeeeeccchhhhcccccccccCC
Q 019240 158 MTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 236 (344)
Q Consensus 158 l~~~~a-~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v~~g~~~alDaki~iDd~A~fR~~~~~~~~~~~ 236 (344)
++..++ ++++.++++.++++++++|.+||++|.++|++++|||||++.+++++|+|||+++||||.|||++.|..++++
T Consensus 160 l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~ 239 (425)
T 3mwd_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFP 239 (425)
T ss_dssp CCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCC
T ss_pred cCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhcc
Confidence 888887 6788888889999999999999999999999999999999933349999999999999999999889888998
Q ss_pred CCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCC--CcceeeecCCCCCHHHHH
Q 019240 237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVL 314 (344)
Q Consensus 237 ~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg--~pANFlD~GG~a~~~~v~ 314 (344)
.+|+++.+|+|.++.++|++++++++||||+||||||||||||||+|+|||+|++ +|| +||||||+||+||.++|+
T Consensus 240 ~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~--~Gg~~~pANflD~gG~a~~e~v~ 317 (425)
T 3mwd_A 240 PPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICD--LGGVNELANYGEYSGAPSEQQTY 317 (425)
T ss_dssp CCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHH--TTCGGGBCEEEEEESCCCHHHHH
T ss_pred ccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHH--cCCCcCCcceEEecCCCCHHHHH
Confidence 8899999999998888888888899999999999999999999999999999999 789 799999999999999999
Q ss_pred HH----HHHHhcccCccE-EEEeeccee
Q 019240 315 QY----ARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 315 ~a----~~~il~d~~v~~-~~~~~~~~~ 337 (344)
++ |++|++||+|++ |||||||++
T Consensus 318 ~~~~~~l~ii~~d~~vk~i~vnIfGGI~ 345 (425)
T 3mwd_A 318 DYAKTILSLMTREKHPDGKILIIGGSIA 345 (425)
T ss_dssp HHHHHHHHHTTSSCCTTCEEEEECBCBC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCCcc
Confidence 86 999999999997 699999985
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-84 Score=685.82 Aligned_cols=333 Identities=38% Similarity=0.699 Sum_probs=301.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecC-CHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHH
Q 019240 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA 79 (344)
Q Consensus 1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~-~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e 79 (344)
||++.|+|||+|+||++|++++++...| .++.+++++ +++||.++++||+++|||||+|+++|||||+|||+++.|++
T Consensus 1 ms~k~i~Ey~aK~ll~~~~~~~~~~~~~-~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~e 79 (829)
T 3pff_A 1 MSAKAISEQTGKELLYKFICTTSAIQNR-FKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (829)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCBCST-TCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhCccccccccC-CceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHH
Confidence 9999999999999999994432222122 255555544 67899999999976899999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhcCCCcceeeEEEEeecCC--CceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCC
Q 019240 80 QVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (344)
Q Consensus 80 ea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~--~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~ 157 (344)
|+++++++|+++.+.++.+.+++++||||+|+++ ++|||+|+++||.+|+|+||.+|||+||+++|++.++|+||..+
T Consensus 80 Ea~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~g 159 (829)
T 3pff_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (829)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCccc
Confidence 9999999999998754455568999999999986 59999999999999999999999999999999888889999999
Q ss_pred CCHHHH-HHHHcCCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhcccccccccC
Q 019240 158 MTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEF 235 (344)
Q Consensus 158 l~~~~a-~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~~~~~ 235 (344)
++.+++ ++++.++++.++++++++|++||++|.++|++++|||||++ .+| ++|+|||+++||||.|||++.|..+++
T Consensus 160 l~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~ 238 (829)
T 3pff_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEF 238 (829)
T ss_dssp CCHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhc
Confidence 999998 77888898899999999999999999999999999999999 554 999999999999999999988988899
Q ss_pred CCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCC--CcceeeecCCCCCHHHH
Q 019240 236 PLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEV 313 (344)
Q Consensus 236 ~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg--~pANFlD~GG~a~~~~v 313 (344)
+.+|+++.+|+|.++.++|++++++++||||+||||||||||||||+|+|||+|++ +|| +||||||+||+||.++|
T Consensus 239 ~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~--~Gg~~~pANFlDvGGga~~e~v 316 (829)
T 3pff_A 239 PPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICD--LGGVNELANYGEYSGAPSEQQT 316 (829)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHH--TTCTTTBCEEEEEESCCCHHHH
T ss_pred cccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHH--cCCCCCCceeEEecCCCCHHHH
Confidence 88899999999998888888889999999999999999999999999999999999 788 79999999999999999
Q ss_pred HHH----HHHHhcccCccE-EEEeeccee
Q 019240 314 LQY----ARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 314 ~~a----~~~il~d~~v~~-~~~~~~~~~ 337 (344)
+++ |++|++||+|++ |||||||++
T Consensus 317 ~~~~~~~l~ii~~d~~vk~ilvNIfGGI~ 345 (829)
T 3pff_A 317 YDYAKTILSLMTREKHPDGKILIIGGSIA 345 (829)
T ss_dssp HHHHHHHHHHTTSSCCTTCEEEEECBCBC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCCcc
Confidence 988 899999999997 599999986
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=6.4e-77 Score=588.00 Aligned_cols=309 Identities=22% Similarity=0.324 Sum_probs=281.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCC-cEEEEeccccCcccCc-------CeEEEe
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSS-RLVVKPDMLFGKRGKS-------GLVALN 75 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~-pvVvKaqv~~g~Rgk~-------GgV~l~ 75 (344)
|+|||||+|++|++| |||+| ++.++++ ++|+.++++++| + |+|||||+++|||||+ |||+++
T Consensus 1 m~l~E~~aK~lL~~~-----GIpvp--~~~~~~s--~~ea~~~a~~lg-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~ 70 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDN-----GVKVQ--RFFVADT--ANEALEAAKRLN-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLT 70 (395)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHT-CSSEEEEECCSSSCGGGCEETTSCBCSEEEE
T ss_pred CCCCHHHHHHHHHHC-----CcCCC--CeEEECC--HHHHHHHHHHcC-CCcEEEEEeeccCCCccCccccCCcCCEEEE
Confidence 789999999999999 99988 8888876 469999999997 7 8999999999999999 999999
Q ss_pred CCHHHHHHHHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC-C-ceEEeeccCccccccc----ccc
Q 019240 76 LDLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDK 146 (344)
Q Consensus 76 ~s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~-~-p~il~s~~GGv~iE~~----~d~ 146 (344)
.|++|+++++++++++.+.| +++.+ ++++||||+|+++++|+|+++..||. + |++++|.+||++||++ ||+
T Consensus 71 ~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~ 150 (395)
T 2fp4_B 71 KDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 150 (395)
T ss_dssp SCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCce
Confidence 99999999999999887543 33344 57899999999999999999999998 4 9999999999999997 999
Q ss_pred eeEEEcCCcCCCCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchh
Q 019240 147 VKTIFLPTEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAA 223 (344)
Q Consensus 147 ~~~~~l~~~~~l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~ 223 (344)
++++|++|..++++.++++++. |+++.+.+++++++.+||++|.++|++++|||||++ .+|+++|+|||+++||||.
T Consensus 151 i~~~~idp~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~ 230 (395)
T 2fp4_B 151 IFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAE 230 (395)
T ss_dssp CEEEECCTTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGG
T ss_pred EEEEecCCCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEeccccc
Confidence 9999999999999999999998 566789999999999999999999999999999999 7778999999999999999
Q ss_pred hhcccccccccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeee
Q 019240 224 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (344)
Q Consensus 224 fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD 303 (344)
|||++++ .++.. ++++|. |.++++++|+|++|+||||||+|||||+|+|||+|++ +||+||||||
T Consensus 231 ~r~~~~~-~~~d~----~~~~~~--------e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~--~Gg~paNflD 295 (395)
T 2fp4_B 231 FRQKDIF-AMDDK----SENEPI--------ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFL--NGGKPANFLD 295 (395)
T ss_dssp GGCHHHH-TTCCC----TTSCHH--------HHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHH--TTCCBCEEEE
T ss_pred ccCcchh-hhcCC----CccChh--------hhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHH--cCCCcCCcEE
Confidence 9999853 44433 566676 5567789999999999999999999999999999999 8899999999
Q ss_pred cCCCCCHHHHHHHHHHHhcccCccE-EEEeeccee
Q 019240 304 YSGAPNEEEVLQYARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 304 ~GG~a~~~~v~~a~~~il~d~~v~~-~~~~~~~~~ 337 (344)
+||+|+.++++++|++|++||+|++ +||||||+.
T Consensus 296 vgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~ 330 (395)
T 2fp4_B 296 LGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIV 330 (395)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSS
T ss_pred ECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCcc
Confidence 9999999999999999999999998 599999975
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=2.4e-76 Score=583.08 Aligned_cols=309 Identities=22% Similarity=0.301 Sum_probs=282.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCc-EEEEeccccCcccCcCeEEEeCCHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (344)
|+|+|||+|++|++| |||+| ++.++++ ++|+.++++++| +| +|||||+++|||||+|||+++.|++|++
T Consensus 1 m~l~E~~aK~lL~~~-----GIpvp--~~~~~~s--~eea~~aa~~lG-~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARY-----GLPAP--VGYACTT--PREAEEAASKIG-AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHC-SSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHC-----CcCCC--CeeEECC--HHHHHHHHHHhC-CCeEEEEEecCCCCCCccCCEEEECCHHHHH
Confidence 789999999999999 99988 8888876 468999999997 79 9999999999999999999999999999
Q ss_pred HHHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC-C-ceEEeeccCccccccc----ccceeEEEcC
Q 019240 83 EFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLP 153 (344)
Q Consensus 83 ~~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~-~-p~il~s~~GGv~iE~~----~d~~~~~~l~ 153 (344)
+++++++++.+.| +++.+ .+++||||+|+++++|+|++++.||. + |++++|.+|||+||++ ||++.+++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 9999999876533 34444 57899999999999999999999998 4 9999999999999985 5888999999
Q ss_pred CcCCCCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhccccc
Q 019240 154 TEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKW 230 (344)
Q Consensus 154 ~~~~l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~ 230 (344)
|..++++.++++|+. |+++.+++++++++.+||++|.++|++++|||||++ ++|+++|+|||+++||||.|||++ |
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~ 229 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-L 229 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-H
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-h
Confidence 998999999999997 567789999999999999999999999999999999 777899999999999999999998 7
Q ss_pred ccccCCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCH
Q 019240 231 ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE 310 (344)
Q Consensus 231 ~~~~~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~ 310 (344)
..++++ ++++|+| ..+++++|+|++|+||||||+|||||+|+|||+|++ +||+||||||+||+||.
T Consensus 230 ~~~~~~----~~~~~~e--------~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~--~Gg~~aNflD~gG~a~~ 295 (388)
T 2nu8_B 230 REMRDQ----SQEDPRE--------AQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKL--HGGEPANFLDVGGGATK 295 (388)
T ss_dssp HHHCCG----GGSCHHH--------HHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHH--TTCCBCEEEECCSCCCH
T ss_pred hhhcCc----cccChhH--------HHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHH--cCCCcCceeEecCCCCH
Confidence 777765 6778874 456678999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHHHHHHhcccCccE-EEEeeccee
Q 019240 311 EEVLQYARVVIDVRDFTN-FGLFFGTQA 337 (344)
Q Consensus 311 ~~v~~a~~~il~d~~v~~-~~~~~~~~~ 337 (344)
++++++|++|++||+|++ +||||||+.
T Consensus 296 ~~~~~~~~~il~d~~v~~ilvni~ggi~ 323 (388)
T 2nu8_B 296 ERVTEAFKIILSDDKVKAVLVNIFGGIV 323 (388)
T ss_dssp HHHHHHHHHHHTSTTCCEEEEEEESCSS
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCCcC
Confidence 999999999999999997 599999986
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=3.5e-74 Score=568.99 Aligned_cols=304 Identities=22% Similarity=0.351 Sum_probs=280.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
|+|+|||+|++|++| |||+| ++.+++++ +|+.++++++| +|||||+|++++||||+|||+++.|++|+++
T Consensus 1 m~L~E~~aK~lL~~~-----GIpvp--~~~~~~s~--eea~~aa~~lG-~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARY-----GVPVP--PGKVAYTP--EEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESSH--HHHHHHHHHHT-SCEEEEECCSSSCTTTTTCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHC-----CCCCC--CeEEECCH--HHHHHHHHHcC-CCEEEEEccccCCCCccceEEEeCCHHHHHH
Confidence 799999999999999 99998 99888764 68999999997 8999999999999999999999999999999
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-C-ceEEeeccCccccccc----ccceeEEEcCCcCC
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLPTEKH 157 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~-p~il~s~~GGv~iE~~----~d~~~~~~l~~~~~ 157 (344)
++++|+++.+. + ..++++|||||+++++|+|++++.||. + |+|++|++|||+||++ ||+++++++++..+
T Consensus 71 a~~~~~~~~~~--g--~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~ 146 (397)
T 3ufx_B 71 KAQAILGMNIK--G--LTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKG 146 (397)
T ss_dssp HHHHHTTCEET--T--EECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTB
T ss_pred HHHHhhhhhcc--C--CccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCC
Confidence 99999987652 2 367899999999999999999999999 5 8999999999999974 67899999999889
Q ss_pred CCHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhccccccccc
Q 019240 158 MTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIE 234 (344)
Q Consensus 158 l~~~~a~~ll~--g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~~~~ 234 (344)
+++.++++|+. |++.. ++++++++.+||++|.++|++++|||||++ .+|+++|+|||+++||||.||||+ |..++
T Consensus 147 l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~~ 224 (397)
T 3ufx_B 147 FRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAELR 224 (397)
T ss_dssp CCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTTH
T ss_pred CCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhhc
Confidence 99999999987 67767 999999999999999999999999999999 777899999999999999999998 77777
Q ss_pred CCCCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHH
Q 019240 235 FPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 314 (344)
Q Consensus 235 ~~~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~ 314 (344)
++ ++++|+ |.++++++|+||+|+||||||+||||++|+|||+|.. +||+||||+|+||+|+.++++
T Consensus 225 ~~----~~~~~~--------e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~--~G~~~aN~lD~gG~a~~e~~~ 290 (397)
T 3ufx_B 225 EV----EAEHPL--------EVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNR--VGGKPANFLDIGGGAKADVVY 290 (397)
T ss_dssp HH----HCSSHH--------HHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHH--TTCCBSEEEECCSCCCHHHHH
T ss_pred Cc----ccCCHh--------HHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHH--cCCCcCCcEecCCCCCHHHHH
Confidence 65 678887 4567799999999999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHhcccCccEE-EEeeccee
Q 019240 315 QYARVVIDVRDFTNF-GLFFGTQA 337 (344)
Q Consensus 315 ~a~~~il~d~~v~~~-~~~~~~~~ 337 (344)
++++++++||+|+++ ||+||++.
T Consensus 291 ~al~~~l~d~~v~~ilv~i~ggi~ 314 (397)
T 3ufx_B 291 NALKVVLKDPDVKGVFINIFGGIT 314 (397)
T ss_dssp HHHHHHHTCTTCCEEEEEEEEEEE
T ss_pred HHHHHHHcCCCCCEEEEECCCCCC
Confidence 999999999999984 89999874
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.5e-35 Score=270.74 Aligned_cols=204 Identities=20% Similarity=0.237 Sum_probs=175.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEe-CCH
Q 019240 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALN-LDL 78 (344)
Q Consensus 1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~-~s~ 78 (344)
+.|++|+|+++|++|++| |||+| ++.++++. +++.++++++| +||||||+.. .+|||+.|||.++ .|+
T Consensus 15 ~~~~~l~k~~~k~ll~~~-----GIp~p--~~~~~~~~--~ea~~~a~~lg-~PvvvKp~~~~~~~r~~~gGv~~~v~~~ 84 (238)
T 1wr2_A 15 QGRTAMVEYEAKQVLKAY-----GLPVP--EEKLAKTL--DEALEYAKEIG-YPVVLKLMSPQILHKSDAKVVMLNIKNE 84 (238)
T ss_dssp TTCCEECHHHHHHHHHTT-----TCCCC--CCEEESSH--HHHHHHHHHHC-SSEEEEEECTTCCCHHHHTCEEEEECSH
T ss_pred cCcCCCCHHHHHHHHHHc-----CcCCC--CeEEeCCH--HHHHHHHHHhC-CCEEEEEccCCCCcCCccCCEEEeCCCH
Confidence 467889999999999999 99998 88887654 58888888897 8999999998 9999999999995 899
Q ss_pred HHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-CceEEeeccCcccccccccceeEEEcCCcCC
Q 019240 79 AQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (344)
Q Consensus 79 eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~ 157 (344)
+|++++++++++....+ .+...+.++|||+|+++++|+|++++.|+. +|++++| .||+++|...|....+ +|
T Consensus 85 ~el~~a~~~~~~~~~~~-~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~~~--~P--- 157 (238)
T 1wr2_A 85 EELKKKWEEIHENAKKY-RPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTFRL--VP--- 157 (238)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEEEE--SS---
T ss_pred HHHHHHHHHHHHhhhhh-CCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceeeec--CC---
Confidence 99999999998765432 333457899999999989999999999995 7899999 9999999988865543 45
Q ss_pred CCHHHHHHHHc---------CCC---hHHHHHHHHHHHHHHHHhhccC--cceeeeeeeee-cCC-ceEEEeeeeeeccc
Q 019240 158 MTLDACAPLIA---------TLP---LEFRGKIGDFIMGVFAVFQDLD--FSFIEMNPFTL-VNG-EPYPLDMRGELDDT 221 (344)
Q Consensus 158 l~~~~a~~ll~---------g~~---~~~~~~l~~~l~~L~~lf~e~d--~~~lEINPL~v-~~g-~~~alDaki~iDd~ 221 (344)
+++..+++|.. |++ ..|++++++++.+||++|.+.+ +.++|||||++ .+| +++|+||++++|||
T Consensus 158 l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 158 ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 67888888753 343 3789999999999999999986 99999999999 776 79999999999997
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.22 E-value=7.1e-12 Score=125.71 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=108.5
Q ss_pred CceEEeeccCcccccccc---c--ceeE--EEcCCcCCCCHHHHHHHHcCC----------Ch-HHHHHHHHHHHHHHHH
Q 019240 127 GCTISFSECGGIEIEENW---D--KVKT--IFLPTEKHMTLDACAPLIATL----------PL-EFRGKIGDFIMGVFAV 188 (344)
Q Consensus 127 ~p~il~s~~GGv~iE~~~---d--~~~~--~~l~~~~~l~~~~a~~ll~g~----------~~-~~~~~l~~~l~~L~~l 188 (344)
|++=++|..|++-.|.+. . .=+. +-+-...+++..+.-+.+..= .. .+-..+.+.+.++.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~~-- 227 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVT-- 227 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHHH--
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHhc--
Confidence 778788878887666531 1 1111 122222256666665555310 11 23344555555442
Q ss_pred hhccCcceeeeeeeee-cCCceEEEeee--------eeec---cchhhhcccccccccCCCCCCCCCCccccccCccchh
Q 019240 189 FQDLDFSFIEMNPFTL-VNGEPYPLDMR--------GELD---DTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEK 256 (344)
Q Consensus 189 f~e~d~~~lEINPL~v-~~g~~~alDak--------i~iD---d~A~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~de~ 256 (344)
..+ |+++ .-|+--. -++ +.=+ -+|.|||.... . ..++.|.
T Consensus 228 -~~K--------PVv~~k~G~~~~-g~~aa~~Htgalag~~~~~~AafRqaGv~-~---------v~~~~El-------- 279 (457)
T 2csu_A 228 -KKK--------PIIALKAGKSES-GARAASSHTGSLAGSWKIYEAAFKQSGVL-V---------ANTIDEM-------- 279 (457)
T ss_dssp -HHS--------CEEEEECC-------------------CHHHHHHHHHHTTCE-E---------ESSHHHH--------
T ss_pred -CCC--------CEEEEEcCCCcc-ccchhhcccCccCCcHHHHHHHHHhCCCe-E---------ECCHHHH--------
Confidence 233 6666 5443211 111 1111 26789998732 2 2233432
Q ss_pred hhccCCcEEEcc--CCcEEEEeeCChhhHHHHHHHhhhccCCC---------------------cceeeecCCCCCHHHH
Q 019240 257 TSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE---------------------LGNYAEYSGAPNEEEV 313 (344)
Q Consensus 257 ~a~~~~l~yv~l--~G~Ig~~vnGaGlamat~D~i~~~g~gg~---------------------pANFlD~GG~a~~~~v 313 (344)
.+....|+| .+ +++|+||+||+|++|.++|++.. +|++ |+||+|+||+++.+.+
T Consensus 280 ~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~--~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~ 356 (457)
T 2csu_A 280 LSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDK--RGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDY 356 (457)
T ss_dssp HHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHT--TTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHH
T ss_pred HHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHH--cCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHH
Confidence 333445666 66 79999999999999999999999 7788 8999999999999999
Q ss_pred HHHHHHHhcccCccEE-EEe
Q 019240 314 LQYARVVIDVRDFTNF-GLF 332 (344)
Q Consensus 314 ~~a~~~il~d~~v~~~-~~~ 332 (344)
.++++++++||+|+++ +++
T Consensus 357 ~~al~~~l~dp~vd~vlv~~ 376 (457)
T 2csu_A 357 YRTAKLLLQDPNVDMLIAIC 376 (457)
T ss_dssp HHHHHHHHHSTTCSEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEEc
Confidence 9999999999999986 666
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.86 E-value=7.5e-08 Score=91.01 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhc----cccCCCcEEEEeccccCcccCcCeEEEeCCHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE----PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa----~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (344)
+.+..|++|+++ |||+| ++.++++.+ ++.+.+ +.++ +|+||||....+++ ||.+..|.+|+.
T Consensus 107 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~~~~~~~~~~~~~g-~PvvvKP~~~~~s~----Gv~~v~~~~el~ 172 (317)
T 4eg0_A 107 DKFRTKLVWQQT-----GVPTP--PFETVMRGD--DYAARATDIVAKLG-LPLFVKPASEGSSV----AVLKVKTADALP 172 (317)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEETTS--CHHHHHHHHHHHHC-SCEEEEECC---------CCEEECSGGGHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEECch--hHHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHH
Confidence 567789999999 99988 888887664 454444 6676 89999998776555 678888999999
Q ss_pred HHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
++.++.... -..+|||++++.++|+.+++..|+..+++...
T Consensus 173 ~a~~~~~~~----------~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 173 AALSEAATH----------DKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp HHHHHHTTT----------CSEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred HHHHHHHhC----------CCeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 888775421 24699999999789999999988766665544
No 9
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.79 E-value=4.7e-08 Score=96.81 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| ++. .+++ .+++.+.+++++ +|+||||..-.|+| ||.+..|++|+.++
T Consensus 119 dK~~~~~~l~~~-----Gip~p--~~~~~~~~~--~~e~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 184 (446)
T 3ouz_A 119 DKSKAKQVMQRA-----GVPVI--PGSDGALAG--AEAAKKLAKEIG-YPVILKAAAGGGGR----GMRVVENEKDLEKA 184 (446)
T ss_dssp SHHHHHHHHHHT-----TCCBC--SBCSSSCCS--HHHHHHHHHHHC-SSEEEEETTCCTTC----SEEEECSGGGHHHH
T ss_pred CHHHHHHHHHHc-----CCCcC--CCcccCCCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----CEEEECCHHHHHHH
Confidence 456789999999 99988 664 3443 568888888887 89999998766666 79999999999998
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.+++........+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 185 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 185 YWSAESEAMTAFG----DGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHhcC----CCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 8877643221101 23699999999779999999999987776654
No 10
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=4e-10 Score=89.47 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHH
Q 019240 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (344)
Q Consensus 5 ~L~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (344)
..+.+..|++|+++ |||+| ++. .+++ .+++.++++.++ +|+||||....+++ ||.+..|.+|+.
T Consensus 6 ~~dK~~~~~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~~~~----gv~~v~~~~el~ 71 (108)
T 2cqy_A 6 SGDKIESKLLAKKA-----EVNTI--PGFDGVVKD--AEEAVRIAREIG-YPVMIKASAGGGGK----GMRIAWDDEETR 71 (108)
T ss_dssp CCCCCCSTTCCCSS-----CCCCC--SCCCSCBSS--HHHHHHHHHHHC-SSEEEEETTSCCTT----TCEEESSHHHHH
T ss_pred hcCHHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHhcC-CCEEEEECCCCCCc----cEEEeCCHHHHH
Confidence 34556678888888 99988 665 4444 457777777886 89999999765555 788889999999
Q ss_pred HHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEE
Q 019240 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSI 121 (344)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi 121 (344)
++.++++.......+ -..+|||+|++..+|+.+++
T Consensus 72 ~~~~~~~~~~~~~~~----~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 72 DGFRLSSQEAASSFG----DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHHHHHTS----SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHHHhhcC----CCcEEEeeccCCCcEEEEEe
Confidence 998887653211011 14699999999777887654
No 11
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.74 E-value=9.1e-08 Score=94.57 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccc----cCCCcEEEEec-cccCcccCcCeEEEeCCHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPW----LSSSRLVVKPD-MLFGKRGKSGLVALNLDLAQV 81 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~----lg~~pvVvKaq-v~~g~Rgk~GgV~l~~s~eea 81 (344)
+-+..|++|+++ |||+| ++..+++ .+++.+++++ + +|+||||. .-.+|| ||.+..|++|+
T Consensus 133 dK~~~k~~l~~~-----Gip~p--~~~~v~~--~~e~~~~~~~~~~~~--~P~VvKp~~~g~~G~----Gv~~v~~~~el 197 (419)
T 4e4t_A 133 DRIAEKRFIEAS-----GVPVA--PHVVIES--AAALAALDDAALDAV--LPGILKTARLGYDGK----GQVRVSTAREA 197 (419)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEECS--HHHHHTSCHHHHHTT--CSEEEEESSSCCTTT----TEEEECSHHHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CeEEECC--HHHHHHHHHhhcccc--CCEEEEecCCCCCCC----ceEEECCHHHH
Confidence 456789999999 99988 8887765 4578777777 7 79999996 444445 89999999999
Q ss_pred HHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++++.+ + + ..++||++++.++|+.+.+..|..|.++.+.
T Consensus 198 ~~a~~~~-~------~-----~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~ 237 (419)
T 4e4t_A 198 RDAHAAL-G------G-----VPCVLEKRLPLKYEVSALIARGADGRSAAFP 237 (419)
T ss_dssp HHHHHHT-T------T-----CCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred HHHHHhc-C------C-----CcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 9887654 1 1 3599999999889999999999887665554
No 12
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.72 E-value=3e-07 Score=89.92 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCC--HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~--~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+.+|++|+++ |||+| ++.++++.+ ..++.++++.++ +|+||||....+++ ||.+..|++|+.++
T Consensus 159 DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----Gv~~v~~~~el~~a 226 (386)
T 3e5n_A 159 DKDMAKRVLRDA-----RLAVA--PFVCFDRHTAAHADVDTLIAQLG-LPLFVKPANQGSSV----GVSQVRTADAFAAA 226 (386)
T ss_dssp BHHHHHHHHHHT-----TCCBC--CEEEEEHHHHTTCCHHHHHHHHC-SSEEEEESBSCSST----TCEEECSGGGHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeCcccchhhHHHHHHhcC-CCEEEEECCCCcCC----CEEEECCHHHHHHH
Confidence 456789999999 99988 888776531 014556666786 89999999876555 78888899999988
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceE
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~i 130 (344)
.++.+.. -..+|||++++ ++|+.+++..|+..+++
T Consensus 227 ~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 227 LALALAY----------DHKVLVEAAVA-GREIECAVLGNAVPHAS 261 (386)
T ss_dssp HHHHTTT----------CSEEEEEECCC-SEEEEEEEECSSSCEEE
T ss_pred HHHHHhC----------CCcEEEEcCCC-CeEEEEEEEeCCCceEE
Confidence 8776531 13699999999 59999999988764333
No 13
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.72 E-value=4.9e-08 Score=94.08 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~ 84 (344)
-+.+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||.... ++| ||.+..|.+|+.++
T Consensus 95 ~dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 160 (369)
T 3aw8_A 95 QDRLREKTFFQGL-----GVPTP--PFHPVDG--PEDLEEGLKRVG-LPALLKTRRGGYDGK----GQALVRTEEEALEA 160 (369)
T ss_dssp TCHHHHHHHHHHH-----TCCCC--CEEEESS--HHHHHHHHTTTC-SSEEEEECCC----------EEEECSHHHHHHH
T ss_pred cCHHHHHHHHHHC-----CCCCC--CceeeCC--HHHHHHHHHHcC-CCEEEEEcCCCCCcc----eEEEECCHHHHHHH
Confidence 4678899999999 99988 8877765 457887788886 89999999876 666 89999999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.+++ + -..++||++++.+.|+.+.+..|+.|.++.++
T Consensus 161 ~~~~-~-----------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 197 (369)
T 3aw8_A 161 LKAL-G-----------GRGLILEGFVPFDREVSLLAVRGRTGEVAFYP 197 (369)
T ss_dssp HTTT-C-----------SSSEEEEECCCCSEEEEEEEEECTTSCEEECC
T ss_pred HHhc-C-----------CCcEEEEEcCCCCEEEEEEEEECCCCCEEEEC
Confidence 7654 1 13599999999889999999999887665543
No 14
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.70 E-value=4.1e-07 Score=88.05 Aligned_cols=98 Identities=20% Similarity=0.147 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCC--HHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~--~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
.+.+..|++|+++ |||+| ++..+++.+ .+++.++++.++ +|+||||....++ -||.+..|++|+.+
T Consensus 139 ~DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss----~Gv~~v~~~~el~~ 206 (364)
T 3i12_A 139 MDKDVAKRLLRDA-----GLNIA--PFITLTRTNRHAFSFAEVESRLG-LPLFVKPANQGSS----VGVSKVANEAQYQQ 206 (364)
T ss_dssp HCHHHHHHHHHHT-----TCCBC--CEEEEETTTGGGCCHHHHHHHHC-SSEEEEETTCCTT----TTCEEESSHHHHHH
T ss_pred HCHHHHHHHHHHC-----CCCCC--CEEEEEccccchhhHHHHHHhcC-CCEEEEECCCCCC----cCeEEeCCHHHHHH
Confidence 3567889999999 99988 888877653 125556667786 8999999865433 37888899999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+.++.+.. -..+|||+++++ +|+.+++..|+.
T Consensus 207 a~~~a~~~----------~~~vlVEe~I~G-~E~~v~vl~~~~ 238 (364)
T 3i12_A 207 AVALAFEF----------DHKVVVEQGIKG-REIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHH----------CSEEEEEECCCS-EEEEEEEEESSS
T ss_pred HHHHHHhc----------CCcEEEEcCcCC-eEEEEEEEeCCC
Confidence 88776531 136999999995 999999998875
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.69 E-value=5.1e-07 Score=87.77 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCH-H-hHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-S-ELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~-~-ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+.+..|++|+++ |||+| ++.++++.+. + ++.++++.++ +|+||||....+++ ||.+..|.+|+..+
T Consensus 135 DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~~~g-~PvvVKP~~~~~s~----Gv~~v~~~~el~~a 202 (377)
T 1ehi_A 135 DKALTKELLTVN-----GIRNT--KYIVVDPESANNWSWDKIVAELG-NIVFVKAANQGSSV----GISRVTNAEEYTEA 202 (377)
T ss_dssp SHHHHHHHHHTT-----TCCCC--CEEEECTTGGGGCCHHHHHHHHC-SCEEEEESSCCTTT----TEEEECSHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEEeccccchHHHHHHHHhcC-CCEEEEeCCCCCCc----CEEEeCCHHHHHHH
Confidence 457789999999 99988 8887765420 1 1445556676 89999999876666 78889999999988
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
.++.+.. . ..+|||+++++.+|+.+++..|..
T Consensus 203 ~~~~~~~-----~-----~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 203 LSDSFQY-----D-----YKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp HHHHTTT-----C-----SCEEEEECCCCSCEEEEEEEESSS
T ss_pred HHHHHhc-----C-----CcEEEEcCCCCCceEEEEEEcCCC
Confidence 8776431 1 359999999954899999998864
No 16
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.68 E-value=1.5e-07 Score=96.10 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEE-----------------------------eecCCHHhHHhhccccCCCcEE
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQV-----------------------------TESTDFSELTNKEPWLSSSRLV 56 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~-----------------------------~~~~~~~ea~~aa~~lg~~pvV 56 (344)
-+.+.+|++|+++ |||+| ++.. +. +.+++.+.++++| +|||
T Consensus 163 ~DK~~~k~ll~~~-----GVPvp--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~--s~~ea~~~a~~ig-yPvV 232 (540)
T 3glk_A 163 GDKIASTVVAQTL-----QVPTL--PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVK--DVDEGLEAAERIG-FPLM 232 (540)
T ss_dssp -CHHHHHHHHHHT-----TCCBC--CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCC--SHHHHHHHHHHHC-SSEE
T ss_pred CCHHHHHHHHHHc-----CCCCC--CcccccccccccccccccccccccccccccccCcC--CHHHHHHHHHhcC-CcEE
Confidence 3678899999999 99988 5533 22 3568888888897 8999
Q ss_pred EEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 57 VKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 57 vKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
|||....|+| ||.+..|.+|+.++.+++..... -..++||++++..+|+.+.+..|+.+.++.++
T Consensus 233 VKp~~ggGG~----Gv~iv~~~~eL~~a~~~~~~~~~--------~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~ 297 (540)
T 3glk_A 233 IKASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 297 (540)
T ss_dssp EEETTCC--------EEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCSSEEEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCCC----CEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 9998877766 78999999999988877754321 13699999999769999999999988776654
No 17
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.67 E-value=2.2e-07 Score=101.90 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| ++..+++ .+++.+.++++| +||||||....|++ ||.+..|++|+.++++
T Consensus 128 DK~~~k~~l~~~-----Gipvp--~~~~v~~--~~ea~~~~~~ig-~PvVvKp~~~~Gg~----Gv~iv~~~eel~~~~~ 193 (1073)
T 1a9x_A 128 DRRRFDVAMKKI-----GLETA--RSGIAHT--MEEALAVAADVG-FPCIIRPSFTMGGS----GGGIAYNREEFEEICA 193 (1073)
T ss_dssp SHHHHHHHHHHT-----TCCCC--SEEEESS--HHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEECC--HHHHHHHHHHcC-CCEEEEECCCCCCC----ceEEeCCHHHHHHHHH
Confidence 456789999999 99988 8887765 458888888887 89999999877766 7888899999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+.+... ....+|||+++++.+|+.+.+..|+.+.++.+
T Consensus 194 ~~~~~~--------~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~ 231 (1073)
T 1a9x_A 194 RGLDLS--------PTKELLIDESLIGWKEYEMEVVRDKNDNCIIV 231 (1073)
T ss_dssp HHHHHC--------TTSCEEEEECCTTSEEEEEEEEECTTCCEEEE
T ss_pred HHHhhC--------CCCcEEEEEccCCCeEEEEEEEEeCCCCEEEE
Confidence 776421 12469999999977899999999988766544
No 18
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.67 E-value=8.1e-08 Score=95.19 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+.+.+|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 107 dK~~~k~~l~~~-----GIptp--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~~el~~a~~ 172 (431)
T 3mjf_A 107 SKAFTKDFLARH-----NIPSA--EYQNFTD--VEAALAYVRQKG-APIVIKADGLAAGK----GVIVAMTQEEAETAVN 172 (431)
T ss_dssp CHHHHHHHHHHT-----TCSBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSSCTTC----SEEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEeeCC--HHHHHHHHHHcC-CeEEEEECCCCCCC----cEEEeCCHHHHHHHHH
Confidence 456789999999 99988 8877765 468888888886 89999999887777 8999999999999999
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... +. .-..++|||+++ +.|+.+.+..|..
T Consensus 173 ~~~~~~~~--g~--~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 173 DMLAGNAF--GD--AGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp HHHTTHHH--HC--CCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHhhccc--cC--CCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 98743221 11 124799999999 7999999999875
No 19
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.66 E-value=1.1e-07 Score=94.45 Aligned_cols=102 Identities=17% Similarity=0.036 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+.+.+|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 123 dK~~~k~~l~~~-----GIp~p--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~eel~~a~~ 188 (442)
T 3lp8_A 123 SKGFTKELCMRY-----GIPTA--KYGYFVD--TNSAYKFIDKHK-LPLVVKADGLAQGK----GTVICHTHEEAYNAVD 188 (442)
T ss_dssp CHHHHHHHHHHH-----TCCBC--CEEEESS--HHHHHHHHHHSC-SSEEEEESSCCTTT----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEECC--HHHHHHHHHHcC-CcEEEeECCCCCCC----eEEEeCCHHHHHHHHH
Confidence 456789999999 99988 8877765 458888888886 89999999887777 8999999999999999
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+++..... + ..-..++|||+++ +.|+.+.+..|...
T Consensus 189 ~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~~ 224 (442)
T 3lp8_A 189 AMLVHHKF--G--EAGCAIIIEEFLE-GKEISFFTLVDGSN 224 (442)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEESSC
T ss_pred HHHhhccc--C--CCCCeEEEEEeec-CcEEEEEEEECCCe
Confidence 98753221 1 1124699999999 79999999988753
No 20
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.66 E-value=2.2e-07 Score=95.78 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEE-----------------------------eecCCHHhHHhhccccCCCcEEE
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQV-----------------------------TESTDFSELTNKEPWLSSSRLVV 57 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~-----------------------------~~~~~~~ea~~aa~~lg~~pvVv 57 (344)
+.+.+|++|+++ |||+| ++.. +. +.+++.++++++| +||||
T Consensus 180 DK~~ak~ll~~a-----GVPvp--p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~--s~eea~~~a~~iG-yPvVV 249 (587)
T 3jrx_A 180 DKIASTVVAQTL-----QVPTL--PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVK--DVDEGLEAAERIG-FPLMI 249 (587)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBTTTTCCCCC------CCCCCCCCHHHHHTTSCC--SHHHHHHHHHHHC-SSEEE
T ss_pred CHHHHHHHHHHc-----CCCCC--CeecccccccccccccccccccccchhhccccccC--CHHHHHHHHHhcC-CeEEE
Confidence 457889999999 99988 5433 22 3568888888997 89999
Q ss_pred EeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 58 KPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 58 Kaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
||..-.|+| ||.+..|.+|+.++.++...... -..++||++++..+|+.+.+..|..+.++.++
T Consensus 250 Kp~~GgGGk----Gv~iV~s~eEL~~a~~~a~~~~~--------~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~ 313 (587)
T 3jrx_A 250 KASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313 (587)
T ss_dssp EETTCCSSS----SEEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECSSSCEEEEE
T ss_pred EeCCCCCCC----CeEEeCCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 999877777 89999999999988877754321 13699999999779999999999988776654
No 21
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.60 E-value=7.8e-07 Score=87.28 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+.+..|++|+++ |||+| +...++..+.+++.++++++| +|+||||.... ++| ||.+..|++|+.+++
T Consensus 123 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~g-~P~VvKp~~gg~~g~----Gv~~v~~~~el~~a~ 190 (403)
T 3k5i_A 123 NKFNQKEHLRKY-----GIPMA--EHRELVENTPAELAKVGEQLG-YPLMLKSKTMAYDGR----GNFRVNSQDDIPEAL 190 (403)
T ss_dssp SHHHHHHHHHTT-----TCCBC--CEEEESSCCHHHHHHHHHHHC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEcCCCHHHHHHHHHHhC-CCEEEEeCCCCcCCC----CEEEECCHHHHHHHH
Confidence 457789999999 99988 888776223568888888886 89999998653 555 899999999988887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.+ + + ..++||++++.+.|+.+.+..|+.+
T Consensus 191 ~~~-~------~-----~~~lvEe~i~~~~E~sv~v~~~~~g 220 (403)
T 3k5i_A 191 EAL-K------D-----RPLYAEKWAYFKMELAVIVVKTKDE 220 (403)
T ss_dssp HHT-T------T-----SCEEEEECCCEEEEEEEEEEECSSC
T ss_pred Hhc-C------C-----CcEEEecCCCCCeEEEEEEEEcCCC
Confidence 654 1 1 2599999999889999999999877
No 22
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.60 E-value=3.7e-07 Score=88.98 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCH-H-hHHhhccccCCCc-EEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-S-ELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~-~-ea~~aa~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
+-+..|++|+++ |||+| ++..+++.+. + ...+.++.++ +| +||||....+++ ||.+..|.+|..+
T Consensus 140 DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~~~lg-~P~vvVKP~~ggss~----Gv~~v~~~~eL~~ 207 (372)
T 3tqt_A 140 EKDLTKTVLRAG-----GIPVV--DWHTLSPRDATEGVYQRLLDRWG-TSELFVKAVSLGSSV----ATLPVKTETEFTK 207 (372)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSGG----GEEEECSHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEechhhhhhHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 456789999999 99988 8877766531 1 1334556776 89 999998765544 7888999999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
+.++.+.. . ..+|||++++ ++|+.+++..|+
T Consensus 208 a~~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 208 AVKEVFRY-----D-----DRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHTTT-----C-----SCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHhc-----C-----CCEEEECCCC-CEEEEEEEEeCC
Confidence 87766431 1 3599999999 799999999887
No 23
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.59 E-value=2.1e-07 Score=91.30 Aligned_cols=101 Identities=21% Similarity=0.182 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+.+..|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 106 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~e~~~~~~~~g-~PvvvKp~~~~gg~----Gv~~v~~~~el~~a~~ 171 (412)
T 1vkz_A 106 SKVYAKRFMKKY-----GIRTA--RFEVAET--PEELREKIKKFS-PPYVIKADGLARGK----GVLILDSKEETIEKGS 171 (412)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHTTSC-SSEEEEESSCCSSC----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 457789999999 99988 7777765 458888888886 89999999877666 8999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... .++ ...++|||+++ +.|+.+.+..|..
T Consensus 172 ~~~~~~~~-~g~---~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 172 KLIIGELI-KGV---KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHTSSS-TTC---CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhccc-cCC---CCeEEEEECCc-CcEEEEEEEECCC
Confidence 88643200 111 12699999999 8999999998765
No 24
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.58 E-value=4.3e-07 Score=92.77 Aligned_cols=106 Identities=9% Similarity=0.028 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEe------------------------ecCCHHhHHhhccccCCCcEEEEeccc
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVT------------------------ESTDFSELTNKEPWLSSSRLVVKPDML 62 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~------------------------~~~~~~ea~~aa~~lg~~pvVvKaqv~ 62 (344)
+-+.+|++|+++ |||+| +.... ...+.+++.+.+++++ +|+||||...
T Consensus 173 dK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g-~PvVvKp~~g 244 (554)
T 1w96_A 173 DKISSTIVAQSA-----KVPCI--PWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG-FPVMIKASEG 244 (554)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC-SSEEEEETTC
T ss_pred CHHHHHHHHHHC-----CCCcC--CccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC-CCEEEEECCC
Confidence 456789999999 99988 54332 0023567777777886 8999999988
Q ss_pred cCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 63 FGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 63 ~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.|+| ||.+..|++|+.++.+++..... -..++||++++.++|+.+.+..|..+.++.+
T Consensus 245 ~gg~----Gv~~v~~~~el~~a~~~~~~~~~--------~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l 302 (554)
T 1w96_A 245 GGGK----GIRQVEREEDFIALYHQAANEIP--------GSPIFIMKLAGRARHLEVQLLADQYGTNISL 302 (554)
T ss_dssp CTTT----TEEEECSHHHHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECTTSCEEEE
T ss_pred CCCc----eEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 7777 89999999999998887764311 1369999999977899999999987765543
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.56 E-value=2.4e-06 Score=82.93 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~ 84 (344)
.+-+..|++|+++ |||+| +...+++ .+++.+++++++ +|+||||.... +|| ||.+..|.+|+.++
T Consensus 111 ~dK~~~k~~l~~~-----Gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 176 (389)
T 3q2o_A 111 QNRFTEKNAIEKA-----GLPVA--TYRLVQN--QEQLTEAIAELS-YPSVLKTTTGGYDGK----GQVVLRSEADVDEA 176 (389)
T ss_dssp TSHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHC-SSEEEEESSCCSSSC----CEEEESSGGGHHHH
T ss_pred cCHHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHH
Confidence 3567789999999 99988 8877765 457888888886 89999997642 234 78889999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+.+.. ..++||++++...|+.+.+..|..+.+..+
T Consensus 177 ~~~~~~------------~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~ 212 (389)
T 3q2o_A 177 RKLANA------------AECILEKWVPFEKEVSVIVIRSVSGETKVF 212 (389)
T ss_dssp HHHHHH------------SCEEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred HHhcCC------------CCEEEEecccCceEEEEEEEEcCCCCEEEe
Confidence 765421 259999999977999999999987655443
No 26
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.54 E-value=1.2e-07 Score=90.97 Aligned_cols=101 Identities=24% Similarity=0.232 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~ 84 (344)
-+.+..|++|+++ |||+| +...++ . +++.+.+++++ +|+|+||.... ++| ||.+..|.+|+.++
T Consensus 91 ~dK~~~~~~l~~~-----gip~p--~~~~~~-~--~~~~~~~~~~~-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 155 (365)
T 2z04_A 91 KSRIREKLFLKKH-----GFPVP--EFLVIK-R--DEIIDALKSFK-LPVVIKAEKLGYDGK----GQYRIKKLEDANQV 155 (365)
T ss_dssp TCHHHHHHHHHTT-----TCCCC--CEEEC------------------CEEEECC-------------------------
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEc-H--HHHHHHHHhcC-CCEEEEEcCCCcCCC----CeEEECCHHHHHHH
Confidence 3567889999999 99988 887766 4 36766677776 89999998876 666 78888899998888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+++++ -..++|||+++.+.|+.+.+..|+.|.++.+
T Consensus 156 ~~~~~~-----------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~ 192 (365)
T 2z04_A 156 VKNHDK-----------EESFIIEEFVKFEAEISCIGVRDREGKTYFY 192 (365)
T ss_dssp --------------------CEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred HHHhcc-----------CCCEEEEccCCCCEEEEEEEEECCCCCEEEE
Confidence 776642 1359999999978999999999987765544
No 27
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.50 E-value=2.2e-06 Score=82.12 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+.+..|++|+++ |||+| +..++++.+ ...+..++ +|+||||....+++ ||.+..+++|+.++.+
T Consensus 132 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~----~~~~~~lg-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (346)
T 3se7_A 132 DKSLTYLVARSA-----GIATP--NFWTVTADE----KIPTDQLT-YPVFVKPARSGSSF----GVSKVAREEDLQGAVE 195 (346)
T ss_dssp SHHHHHHHHHHT-----TCBCC--CEEEEETTS----CCCTTTCC-SSEEEEESSCCTTT----TCEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CcCcC--CEEEEcCcH----HHHHHhcC-CCEEEEeCCCCCCc----CEEEECCHHHHHHHHH
Confidence 567789999999 99998 888887653 23455675 89999998765544 6788889999998887
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.... -..+|||++++ ++|+.+++..|..+
T Consensus 196 ~~~~~----------~~~vlvEe~I~-G~E~~v~vl~~~~~ 225 (346)
T 3se7_A 196 AAREY----------DSKVLIEEAVI-GTEIGCAVMGNGPE 225 (346)
T ss_dssp HHTTT----------CSEEEEEECCC-SEEEEEEEEEETTE
T ss_pred HHHhC----------CCcEEEEeCcC-CEEEEEEEEecCCC
Confidence 76431 13699999999 79999999998754
No 28
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.50 E-value=6.8e-07 Score=87.95 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=68.5
Q ss_pred HHHHHHHH-HHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL-~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+..|++| +++ |||+| +...+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.++.+
T Consensus 121 K~~~k~~l~~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~ 186 (433)
T 2dwc_A 121 RERLRETLVKEA-----KVPTS--RYMYATT--LDELYEACEKIG-YPCHTKAIMSSSGK----GSYFVKGPEDIPKAWE 186 (433)
T ss_dssp HHHHHHHHHHTS-----CCCCC--CEEEESS--HHHHHHHHHHHC-SSEEEEECCC----------EEECSGGGHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCCC--CeeEeCC--HHHHHHHHHhcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHH
Confidence 45678888 788 99888 8777765 357777777886 89999998766666 7888899999998887
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
+++.... + .-..++||++++.+.|+.+.+..|.
T Consensus 187 ~~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 187 EAKTKAR---G---SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp C---------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred HHHhhcc---c---CCCCEEEEccCCCCeeEEEEEEecc
Confidence 7654321 0 1246999999997899999998875
No 29
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.50 E-value=1.8e-07 Score=97.96 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
-+.+.+|++|+++ |||+| ++. .+++. +++.+.++++| +|+||||..-.|+| ||.+..|++|+.+
T Consensus 114 ~dK~~~k~~l~~~-----GVPvp--p~~~~~~~s~--~e~~~~a~~ig-yPvVvKp~~ggggk----Gv~iv~~~~el~~ 179 (681)
T 3n6r_A 114 GDKITSKKIAQEA-----NVSTV--PGYMGLIEDA--DEAVKISNQIG-YPVMIKASAGGGGK----GMRIAWNDQEARE 179 (681)
T ss_dssp TSHHHHHHHHHTT-----TCCCC--CC-----------------------------------------------------
T ss_pred CCHHHHHHHHHHc-----CcCcC--CccccCcCCH--HHHHHHHHhcC-CcEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 3567889999999 99988 653 44443 48888888996 89999998766666 7888899999988
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
+.+++...... . ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 180 a~~~~~~ea~~--~--fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 180 GFQSSKNEAAN--S--FGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp ---------------------------CCSCEEEEEEEECCSSSCCEEEE
T ss_pred HHHHHHHHHHH--h--CCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEe
Confidence 88776543221 0 0124799999999779999999999987776665
No 30
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.50 E-value=1.6e-07 Score=99.35 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhc-cccCCCcEEEEeccccCcccCcCeEEEeC---CHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE-PWLSSSRLVVKPDMLFGKRGKSGLVALNL---DLAQVAE 83 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa-~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~---s~eea~~ 83 (344)
-..+|++|+++ |||+| ++.++++.+ ++.+++ +.+| +|+||||....+|| ||.+.. |.+|+.+
T Consensus 485 K~~tk~lL~~~-----GIPvP--~~~~~~~~~--ea~~~~~~~~g-~PvVVKP~~G~~G~----GV~iv~~~~s~eel~~ 550 (750)
T 3ln6_A 485 KVVTKKILDEK-----HFPTP--FGDEFTDRK--EALNYFSQIQD-KPIVVKPKSTNFGL----GISIFKTSANLASYEK 550 (750)
T ss_dssp SHHHHHHHHHT-----TCCCC--CCCCEETTT--THHHHHHHSSS-SCEEEEETTCCSSS----SCEEESSCCCHHHHHH
T ss_pred HHHHHHHHHHC-----CcCCC--CEEEECCHH--HHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEEeCCCCHHHHHH
Confidence 46789999999 99998 887777764 665555 5665 89999997654444 888876 8999999
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCce-----EEeeccCccccccc
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT-----ISFSECGGIEIEEN 143 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~-----il~s~~GGv~iE~~ 143 (344)
+.+.++.. ...++||++++ +.|+.+.+.-|+.-++ ..+++.|+..|+++
T Consensus 551 a~~~~~~~----------~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eL 604 (750)
T 3ln6_A 551 AIDIAFTE----------DSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQL 604 (750)
T ss_dssp HHHHHHHH----------CSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHH
T ss_pred HHHHHHhh----------CCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEecCCccCHHHH
Confidence 98877531 13699999999 7999999986654222 12345999999985
No 31
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.50 E-value=9.5e-07 Score=96.92 Aligned_cols=98 Identities=12% Similarity=0.179 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..+++|+++ |||+| ++..+++ .+++.+.++++| +||||||....||| ||.+..|.+|+.++.++
T Consensus 675 K~~~~~ll~~~-----GIp~P--~~~~~~s--~eea~~~~~~ig-~PvvVKP~~~~gG~----Gv~iv~~~~el~~~~~~ 740 (1073)
T 1a9x_A 675 RERFQHAVERL-----KLKQP--ANATVTA--IEMAVEKAKEIG-YPLVVRASYVLGGR----AMEIVYDEADLRRYFQT 740 (1073)
T ss_dssp HHHHHHHHHHH-----TCCCC--CEEECCS--HHHHHHHHHHHC-SSEEEEC-----------CEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CcCCC--CceEECC--HHHHHHHHHHcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHH
Confidence 45678999999 99988 8887765 468888888886 89999999887777 89999999999988877
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.... .-..+|||++++..+|+.+.+..|..+
T Consensus 741 a~~~~--------~~~~vlvEefI~g~~E~~V~~l~d~~~ 772 (1073)
T 1a9x_A 741 AVSVS--------NDAPVLLDHFLDDAVEVDVDAICDGEM 772 (1073)
T ss_dssp CC----------------EEEBCCTTCEEEEEEEEECSSC
T ss_pred HHhhC--------CCCcEEEEEccCCCcEEEEEEEEECCe
Confidence 64311 124699999999777999999998854
No 32
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.47 E-value=2.2e-07 Score=97.33 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEE--eecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQV--TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~--~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+.+|++|+++ |||+| ++.. +.+ .+++.++++++| +||||||..-.|+| ||.+..|++|+.++
T Consensus 141 DK~~~k~~l~~~-----GVpvp--p~~~~~~~s--~~e~~~~a~~ig-yPvvvKp~~G~Gg~----Gv~iv~~~~el~~a 206 (675)
T 3u9t_A 141 SKSAAKALMEEA-----GVPLV--PGYHGEAQD--LETFRREAGRIG-YPVLLKAAAGGGGK----GMKVVEREAELAEA 206 (675)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CCCCSCCCC--TTHHHHHHHHSC-SSBCCBCCC----------CCCBCCTTTHHHH
T ss_pred hHHHHHHHHHHc-----CcCcC--CccccCCCC--HHHHHHHHHhCC-CcEEEEECCCCCCc----cEEEECCHHHHHHH
Confidence 457889999999 99988 6553 334 358888888997 89999998776666 78888999998888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.+.+...... . ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 207 ~~~~~~ea~~--~--fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 207 LSSAQREAKA--A--FGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp HSCCCC------------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHH--h--cCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEe
Confidence 7655432211 0 0124699999999879999999999987776654
No 33
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.42 E-value=6.7e-07 Score=86.86 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++.+ ++.++++++| +|+||||.... ++| ||.+..|++|+.+++
T Consensus 110 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~~~~~~~~~g-~P~vvKp~~gg~~g~----Gv~~v~~~~el~~a~ 175 (377)
T 3orq_A 110 DRLTEKETLKSA-----GTKVV--PFISVKEST--DIDKAIETLG-YPFIVKTRFGGYDGK----GQVLINNEKDLQEGF 175 (377)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CEEEECSST--HHHHHHHHTC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEECCHH--HHHHHHHHcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHH
Confidence 346678899999 99988 888877654 7777788886 89999997653 455 788889999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+.+.. ..++||++++..+|+.+.+.+|..+.+..+
T Consensus 176 ~~~~~------------~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~ 210 (377)
T 3orq_A 176 KLIET------------SECVAEKYLNIKKEVSLTVTRGNNNQITFF 210 (377)
T ss_dssp HHHTT------------SCEEEEECCCEEEEEEEEEEECGGGCEEEC
T ss_pred HhcCC------------CcEEEEccCCCCEEEEEEEEEeCCCCEEEE
Confidence 76632 359999999976999999998877655444
No 34
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.40 E-value=7.4e-07 Score=88.13 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| +.. .+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.++
T Consensus 114 dK~~~k~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 179 (451)
T 1ulz_A 114 DKARSKEVMKKA-----GVPVV--PGSDGVLKS--LEEAKALAREIG-YPVLLKATAGGGGR----GIRICRNEEELVKN 179 (451)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBCSSSCCC--HHHHHHHHHHHC-SSEEEEECSSSSCC----SCEEESSHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCc----cEEEeCCHHHHHHH
Confidence 346789999999 99988 654 3433 467777777886 89999999877666 88899999999998
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++++......-+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 180 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 1ulz_A 180 YEQASREAEKAFG----RGDLLLEKFIENPKHIEYQVLGDKHGNVIHLG 224 (451)
T ss_dssp HHHHHHHHHHTTS----CCCEEEEECCCSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHhcC----CCeEEEEEcccCCeEEEEEEEEcCCCCEEEEe
Confidence 8877642111001 13699999999778999999999877665443
No 35
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.40 E-value=3.1e-07 Score=101.46 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+.+|++|+++ |||+| ++. .+++. +++.+.+++++ +|+||||....|+| ||.+..|++|+.++
T Consensus 134 DK~~~k~~l~~~-----GIPvp--~~~~~~v~s~--eea~~~a~~ig-yPvVVKp~~g~GG~----Gv~iv~s~eEL~~a 199 (1165)
T 2qf7_A 134 NKVAARNLAISV-----GVPVV--PATEPLPDDM--AEVAKMAAAIG-YPVMLKASWGGGGR----GMRVIRSEADLAKE 199 (1165)
T ss_dssp SHHHHHHHHHHT-----TCCBC----------------------------------------------------------
T ss_pred CHHHHHHHHHHc-----CCCCC--CeeCcCCCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 457789999999 99988 665 44444 47777788886 89999999887777 78888999999888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
.+++...... . ..-..++||++++.++|+.+.+..|+.+.++.+
T Consensus 200 ~~~~~~~a~~--~--fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l 243 (1165)
T 2qf7_A 200 VTEAKREAMA--A--FGKDEVYLEKLVERARHVESQILGDTHGNVVHL 243 (1165)
T ss_dssp ------------------------CCCSSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHh--h--cCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEE
Confidence 8776543211 0 012469999999988999999999988766543
No 36
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.38 E-value=1e-06 Score=87.04 Aligned_cols=109 Identities=10% Similarity=0.079 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhH-HhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSEL-TNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea-~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
+-+..|++|+++ |||+| +.. .+++. +++ .+.+++++ +|+||||....|+| ||.+..|.+|+.+
T Consensus 115 dK~~~k~~l~~~-----gip~p--~~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~ 180 (449)
T 2w70_A 115 DKVSAIAAMKKA-----GVPCV--PGSDGPLGDD--MDKNRAIAKRIG-YPVIIKASGGGGGR----GMRVVRGDAELAQ 180 (449)
T ss_dssp SHHHHHHHHHHH-----TCCBC--SBCSSCCCSC--HHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEECSHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCcC--CCcccccCCH--HHHHHHHHHHhC-CcEEEEECCCCCCC----CEEEeCCHHHHHH
Confidence 346789999999 99988 664 45444 477 77777786 89999999887776 7888999999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
+.++++......-+ -..++|||+++..+|+.+.+..|..|.++.++
T Consensus 181 ~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~ 226 (449)
T 2w70_A 181 SISMTRAEAKAAFS----NDMVYMEKYLENPRHVEIQVLADGQGNAIYLA 226 (449)
T ss_dssp HHHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHhhcC----CCcEEEEeccCCCeEEEEEEEEcCCCCEEEEe
Confidence 88877642110001 13699999999778999999999877665443
No 37
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.37 E-value=8.2e-07 Score=87.80 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| +.. .+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.++
T Consensus 114 dK~~~k~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 179 (451)
T 2vpq_A 114 IKDVAKAEMIKA-----NVPVV--PGSDGLMKD--VSEAKKIAKKIG-YPVIIKATAGGGGK----GIRVARDEKELETG 179 (451)
T ss_dssp SHHHHHHHHHHT-----TCCBC--SBCSSCBSC--HHHHHHHHHHHC-SSEEEEETTCCTTC----SEEEESSHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCcC--CCcccCcCC--HHHHHHHHHhcC-CcEEEEECCCCCCC----CEEEeCCHHHHHHH
Confidence 346789999999 99887 654 4443 467777777886 89999999877666 89999999999998
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++++......-+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 180 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 2vpq_A 180 FRMTEQEAQTAFG----NGGLYMEKFIENFRHIEIQIVGDSYGNVIHLG 224 (451)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCCSEEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEEecCCCeEEEEEEEEcCCCCEEEEe
Confidence 8877643111001 14699999999768999999999877665443
No 38
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.37 E-value=7.1e-07 Score=98.41 Aligned_cols=109 Identities=7% Similarity=0.049 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+.+.+|++|+++ |||+| ++. .+++. +++.+.++++| +||||||..-.|+| ||.+..|++|+.++
T Consensus 118 DK~~~r~ll~~a-----GIPvp--p~~~~~v~s~--eea~~~a~~iG-yPvVVKP~~GgGg~----Gv~vv~s~eeL~~a 183 (1150)
T 3hbl_A 118 DKVKARTTAIKA-----DLPVI--PGTDGPIKSY--ELAKEFAEEAG-FPLMIKATSGGGGK----GMRIVREESELEDA 183 (1150)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBCSSCBCSS--STTTTTGGGTC-SSEEEECCC-----------CEECCSSSCTHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CccccCCCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 457889999999 99988 665 45554 47778888886 89999998776666 78888899998888
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
.++....... . ..-..++||++++..+|+.+.+..|..+.++.+.
T Consensus 184 ~~~a~~~a~~--~--fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~ 228 (1150)
T 3hbl_A 184 FHRAKSEAEK--S--FGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLF 228 (1150)
T ss_dssp HHSSSSSCC----------CBEEECCCSSCEEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHh--h--cCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEE
Confidence 7766533211 0 0124699999999779999999999988776554
No 39
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.37 E-value=1.2e-06 Score=85.70 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~~g~----Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 102 SKQFAKDLMKKY-----DIPTA--EYETFTS--FDEAKAYVQEKG-APIVIKADGLAAGK----GVTVAMTEEEAIACLH 167 (422)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSCGGGT----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 456789999999 99888 8777765 457777777786 89999998876666 8999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... + ..-..++|||+++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 168 DFLEDEKF--G--DASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhhhc--c--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 88653211 1 0124699999999 7999999988754
No 40
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.37 E-value=9.2e-07 Score=98.02 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCce-EEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSA-QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~-~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+.+|++|+++ |||+| ++ ..+++. +++.++++++| +||||||....|+| ||.++.|.+|+.++.+
T Consensus 145 K~~ak~ll~~a-----GIPvp--p~~~~v~s~--eea~~~a~~iG-yPvVVKP~~GgGGk----GV~iv~s~eEL~~a~~ 210 (1236)
T 3va7_A 145 KHSAREIAERA-----KVPLV--PGSGLIKDA--KEAKEVAKKLE-YPVMVKSTAGGGGI----GLQKVDSEDDIERVFE 210 (1236)
T ss_dssp TTHHHHHHHHT-----TCCCC--C--------------------------------------------------------
T ss_pred HHHHHHHHHHc-----CCCCC--CeeEecCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 35689999999 99987 54 344443 47888888897 89999998777777 7888899999998887
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEee
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s 133 (344)
++...... . ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 211 ~~~~~a~~--~--~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 211 TVQHQGKS--Y--FGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp --------------------------CCEEEEEEEEEESSSCEEEEE
T ss_pred HHHHHHHh--c--cCCCcEEEeeccCCCeEEEEEEEecCCceEEEEe
Confidence 77543211 0 0124699999999779999999999887776664
No 41
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.36 E-value=3.7e-06 Score=81.58 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++.+.+++.+ +..++ +|+||||....+++ ||.+..|.+|+.++.+
T Consensus 149 DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~-~~~lg-~PvvVKP~~g~ss~----Gv~~v~~~~el~~a~~ 215 (367)
T 2pvp_A 149 NKYLTKLYAKDL-----GIKTL--DYVLLNEKNRANALD-LMNFN-FPFIVKPSNAGSSL----GVNVVKEEKELIYALD 215 (367)
T ss_dssp SHHHHHHHHHHH-----TCBCC--CCEEECTTTGGGHHH-HCCSC-SCEEEEESSCCTTT----TCEEESSTTSHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEeCCchHHHHH-HhccC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHH
Confidence 456789999999 99988 887776654335555 66776 89999998765555 6788888888888877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEE-EEEEE
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY-LSIVS 123 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Ely-lgi~~ 123 (344)
+.+.. -..+|||+++++.+|+. +.+.+
T Consensus 216 ~~~~~----------~~~vlVEe~I~G~~E~svi~v~v 243 (367)
T 2pvp_A 216 SAFEY----------SKEVLIEPFIQGVKEYNLAGCKI 243 (367)
T ss_dssp HHTTT----------CSCEEEEECCTTCEEEEEEEEEE
T ss_pred HHHhc----------CCcEEEEeCCCCCceeeEEEEEE
Confidence 66431 13699999999448954 33333
No 42
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.36 E-value=8.2e-06 Score=79.73 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHhhhcCCC-cccCCCceEEeecCC-H-HhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAG-LDLQICSAQVTESTD-F-SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~G-I~vp~~~~~~~~~~~-~-~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
+-+..|++|+++ | ||+| +...+++.+ . +++.++++.++ +||||||....+++ ||.+..|++|+.+
T Consensus 161 DK~~~k~~l~~~-----G~Ipvp--~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~el~~ 228 (383)
T 3k3p_A 161 DKITTNQVLESA-----TTIPQV--AYVALIEGEPLESKLAEVEEKLI-YPVFVKPANMGSSV----GISKAENRTDLKQ 228 (383)
T ss_dssp CHHHHHHHHHHH-----CCCCBC--CEEEEETTSCHHHHHHHHHHHCC-SSEEEEECC----------CEEESSHHHHHH
T ss_pred CHHHHHHHHHhC-----CCcCCC--CEEEEeCccchhHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHH
Confidence 457789999999 9 9988 888777652 2 35566677886 89999998765444 7888899999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+.++.+.. . ..+|||++++ ++|+-+++..|..
T Consensus 229 al~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~d~~ 260 (383)
T 3k3p_A 229 AIALALKY-----D-----SRVLIEQGVD-AREIEVGILGNTD 260 (383)
T ss_dssp HHHHHHHH-----C-----SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHhC-----C-----CeEEEEcCCC-CeEEEEEEEeCCC
Confidence 88776421 1 3699999999 7999999998743
No 43
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.35 E-value=1.3e-06 Score=86.62 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 123 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~PvVvKp~~~~gg~----Gv~~v~~~~el~~~~~ 188 (451)
T 2yrx_A 123 SKAFAKELMKKY-----GIPTA--DHAAFTS--YEEAKAYIEQKG-APIVIKADGLAAGK----GVTVAQTVEEALAAAK 188 (451)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEECC----C----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHhcC-CcEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 456778999999 99988 8777765 457777777786 89999999877666 8999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... + ..-..++|||+++ +.|+.+.+..|..
T Consensus 189 ~~~~~~~~--g--~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 189 AALVDGQF--G--TAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHSCC--B--TTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhcccc--C--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 88653211 1 1124699999999 7899999988754
No 44
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.34 E-value=1e-06 Score=87.52 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceE--EeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~--~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (344)
-+-+..|++|+++ |||+| +.. .+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.+
T Consensus 119 ~dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~ 184 (461)
T 2dzd_A 119 GDKVKARHAAVNA-----GIPVI--PGSDGPVDG--LEDVVAFAEAHG-YPIIIKAALGGGGR----GMRIVRSKSEVKE 184 (461)
T ss_dssp TSHHHHHHHHHHT-----TCCBC--CBCSSCCSS--HHHHHHHHHHHC-SCEEEEESTTCSSS----SEEEECCGGGHHH
T ss_pred hCHHHHHHHHHHc-----CCCCC--CCcccCcCC--HHHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEeCCHHHHHH
Confidence 3557789999999 99988 654 3433 467877777886 89999999887776 7899999999998
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEE
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 131 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il 131 (344)
+.++++......-+ -..++|||+++..+|+.+.+..|..+.++.
T Consensus 185 ~~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~ 228 (461)
T 2dzd_A 185 AFERAKSEAKAAFG----SDEVYVEKLIENPKHIEVQILGDYEGNIVH 228 (461)
T ss_dssp HHHHHHHHHHHHTS----CCCEEEEECCCSCEEEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHhhcC----CCcEEEEECCCCCeEEEEEEEEcCCCCEEE
Confidence 88877643111001 146999999997789999999998776653
No 45
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.34 E-value=7e-07 Score=86.28 Aligned_cols=100 Identities=22% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHHHHH-HHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL-~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+..|++| +++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 113 K~~~~~~l~~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~ 178 (391)
T 1kjq_A 113 REGIRRLAAEEL-----QLPTS--TYRFADS--ESLFREAVADIG-YPCIVKPVMSSSGK----GQTFIRSAEQLAQAWK 178 (391)
T ss_dssp HHHHHHHHHTTS-----CCCBC--CEEEESS--HHHHHHHHHHHC-SSEEEEESCC---C----CCEEECSGGGHHHHHH
T ss_pred HHHHHHHHHHhC-----CCCCC--CeeeeCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHH
Confidence 35677887 678 99988 8777765 457777777886 89999998766666 7888889999998888
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+++.... + .-..++||++++.+.|+.+.+..|..+
T Consensus 179 ~~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~g 213 (391)
T 1kjq_A 179 YAQQGGR---A---GAGRVIVEGVVKFDFEITLLTVSAVDG 213 (391)
T ss_dssp HHHHHSG---G---GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred HHHhhcc---c---CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence 7764321 1 124699999999888999999988765
No 46
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.34 E-value=1.5e-06 Score=85.06 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 101 dK~~~~~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~gg~----Gv~~v~~~~el~~~~~ 166 (417)
T 2ip4_A 101 SKAFAKGLMERY-----GIPTA--RYRVFRE--PLEALAYLEEVG-VPVVVKDSGLAAGK----GVTVAFDLHQAKQAVA 166 (417)
T ss_dssp CHHHHHHHHHHT-----CCCBC--CEEEESS--HHHHHHHHHHHC-SSEEEECTTSCSST----TCEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeeeeCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----CEEEeCCHHHHHHHHH
Confidence 456789999999 99988 8777665 457777777786 89999998776666 7889999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++.... + ..++|||+++ +.|+.+.+..|..
T Consensus 167 ~~~~~~~------~--~~~lvEe~i~-g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 167 NILNRAE------G--GEVVVEEYLE-GEEATVLALTDGE 197 (417)
T ss_dssp HHTTSSS------C--CCEEEEECCC-SCEEEEEEEESSS
T ss_pred HHHhhcc------C--CeEEEEECcc-CcEEEEEEEEeCC
Confidence 8763211 1 4699999999 7899999888643
No 47
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.33 E-value=1.9e-06 Score=84.34 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++.+
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~ 167 (424)
T 2yw2_A 102 SKAFAKTFMKKY-----GIPTA--RYEVFTD--FEKAKEYVEKVG-APIVVKADGLAAGK----GAVVCETVEKAIETLD 167 (424)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSCCTTC----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHHcC-CcEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 456788999999 99888 8777655 457777777786 89999998776666 8999999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+++..... + ..-..++|||+++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~~G~ 202 (424)
T 2yw2_A 168 RFLNKKIF--G--KSSERVVIEEFLE-GEEASYIVMINGD 202 (424)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhhhc--c--CCCCeEEEEECCC-CcEEEEEEEEcCC
Confidence 88653211 1 0124699999999 7899999888754
No 48
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.28 E-value=2.4e-06 Score=84.58 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCc-EEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++ .+++.+.+++++ +| +||||....++| ||.+..|.+|+.++.
T Consensus 128 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvvKp~~~~gg~----Gv~~v~~~~el~~~~ 193 (452)
T 2qk4_A 128 SKRFAKEFMDRH-----GIPTA--QWKAFTK--PEEACSFILSAD-FPALVVKASGLAAGK----GVIVAKSKEEACKAV 193 (452)
T ss_dssp BHHHHHHHHHHT-----TCCBC--CEEEESS--HHHHHHHHHHCS-SCEEEEEESBC---C----CEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHhCC-CCeEEEEeCCCCCCC----CEEEeCCHHHHHHHH
Confidence 346778999999 99988 8777765 457777777886 89 999998776666 899999999999998
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
++++..... + ..-..++|||+++ +.|+.+.+..|..
T Consensus 194 ~~~~~~~~~--g--~~~~~~lvEe~i~-G~E~sv~~~~dG~ 229 (452)
T 2qk4_A 194 QEIMQEKAF--G--AAGETIVIEELLD-GEEVSCLCFTDGK 229 (452)
T ss_dssp HHHTTC-----------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred HHHHhhhhc--c--CCCCeEEEEECCC-CCeEEEEEEECCC
Confidence 888653211 1 0124699999999 7899999888643
No 49
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.27 E-value=1.5e-05 Score=79.86 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 6 L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
.+.+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||..-.|++ ||.+..|.+|+.+++
T Consensus 138 ~DK~~~k~~l~~~-----GIpvp--~~~~v~s--~ee~~~~~~~lg-~PvVVKP~~g~gg~----Gv~iv~~~eel~~a~ 203 (474)
T 3vmm_A 138 RDKNKMRDAFNKA-----GVKSI--KNKRVTT--LEDFRAALEEIG-TPLILKPTYLASSI----GVTLITDTETAEDEF 203 (474)
T ss_dssp TCHHHHHHHHHHT-----TSCCC--CEEEECS--HHHHHHHHHHSC-SSEEEEESSCCTTT----TCEEECCTTSHHHHH
T ss_pred hCHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHHcC-CCEEEEECCCCcCc----eEEEECCHHHHHHHH
Confidence 4678899999999 99988 8877765 458888888997 89999998877666 778888888888887
Q ss_pred HHHhcccchhcCCC--cceeeEEEEeecCCC
Q 019240 86 KGRLGTEVEMGGCK--GPITTFIVEPFVPHN 114 (344)
Q Consensus 86 ~~~l~~~~~~~g~~--~~v~~vLVee~~~~~ 114 (344)
+++.........+. ..-..+|||+++++.
T Consensus 204 ~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 204 NRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 77654221100000 112579999999954
No 50
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.25 E-value=8.8e-06 Score=78.32 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCH-HhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~-~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|++. |||+| ++...++.+. ....++++++| +||||||-...+++ ||.+..|.+|..++.
T Consensus 139 DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~gg~s~----Gv~~v~~~~el~~~~ 206 (357)
T 4fu0_A 139 DKDRAHKLVSLA-----GISVP--KSVTFKRFNEEAAMKEIEANLT-YPLFIKPVRAGSSF----GITKVIEKQELDAAI 206 (357)
T ss_dssp CHHHHHHHHHHT-----TCBCC--CEEEEEGGGHHHHHHHHHHHCC-SSEEEEETTCSSST----TCEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEeecCCChHHHHHHHHHhcC-CCEEEEECCCCCCC----ceEEeccHHhHHHHH
Confidence 446789999999 99998 8877765432 22345567786 89999997654444 788889999998887
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+..... -..+|||++++ ++|+-+++..|..
T Consensus 207 ~~a~~~----------~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 207 ELAFEH----------DTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHHTTT----------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHhcc----------CCeEEEEEecC-CEEEEEEEEecCC
Confidence 665321 13699999997 7899999998865
No 51
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.23 E-value=2.8e-06 Score=82.46 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....|+| ||.+..|.+|+.++.+
T Consensus 109 dK~~~~~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~ 174 (403)
T 4dim_A 109 DKYKMKEAFKKY-----NVNTA--RHFVVRN--ENELKNALENLK-LPVIVKATDLQGSK----GIYIAKKEEEAIDGFN 174 (403)
T ss_dssp CHHHHHHHHHHH-----TCCCC--CEECCCS--HHHHHHHHHTSC-SSEEEECSCC---------CEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEeCC--HHHHHHHHhcCC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHH
Confidence 346788999999 99988 8776654 468888888886 89999998777666 8899999999999988
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
++..... -..++||++++ +.|+.+.+..+
T Consensus 175 ~~~~~~~--------~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 175 ETMNLTK--------RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHHCS--------SSCCEEEECCC-SEEEEEEEEEE
T ss_pred HHHhcCc--------CCcEEEEEccC-CcEEEEEEEEE
Confidence 8764321 13599999999 58999988864
No 52
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.23 E-value=3e-06 Score=79.06 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHh-hccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN-KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~-aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+.+..|++|+++ |||+| +..++++.+ ++.. .++.++ +|+||||....+++ ||.+..|.+|+.++.
T Consensus 97 dK~~~~~~l~~~-----Gip~p--~~~~~~~~~--~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~~~~ 162 (307)
T 3r5x_A 97 DKNISKKILRYE-----GIETP--DWIELTKME--DLNFDELDKLG-FPLVVKPNSGGSSV----GVKIVYDKDELISML 162 (307)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEESSS--CCCHHHHHHHC-SSEEEEECC----C----CCEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeChh--hhhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHH
Confidence 456789999999 99988 888887653 3322 445665 89999998776655 788889999999988
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEE
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~ 122 (344)
++++.. -..++|||+++ +.|+.+.+.
T Consensus 163 ~~~~~~----------~~~~lvee~i~-G~e~~v~v~ 188 (307)
T 3r5x_A 163 ETVFEW----------DSEVVIEKYIK-GEEITCSIF 188 (307)
T ss_dssp HHHHHH----------CSEEEEEECCC-SEEEEEEEE
T ss_pred HHHHhc----------CCCEEEECCcC-CEEEEEEEE
Confidence 877532 13699999999 699999984
No 53
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.18 E-value=2.7e-06 Score=82.38 Aligned_cols=95 Identities=20% Similarity=0.079 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccc-cCcccCcCeEEEeCC--HHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLD--LAQVAEF 84 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s--~eea~~~ 84 (344)
-+..|++|+++ |||+| ++..+++. +++.++++++| +|+||||... .+|| ||.+..| .+|+.++
T Consensus 80 K~~~k~~l~~~-----GIptp--~~~~v~~~--~e~~~~~~~~G-~P~VvKp~~~G~~Gk----Gv~~v~~~~~~el~~a 145 (355)
T 3eth_A 80 RLTQKQLFDKL-----HLPTA--PWQLLAER--SEWPAVFDRLG-ELAIVKRRTGGYDGR----GQWRLRANETEQLPAE 145 (355)
T ss_dssp HHHHHHHHHHT-----TCCBC--CEEEECCG--GGHHHHHHHHC-SEEEEEESSSCCTTT----TEEEEETTCGGGSCGG
T ss_pred HHHHHHHHHHC-----ccCCC--CEEEECCH--HHHHHHHHHcC-CCEEEEecCCCCCCC----eEEEEcCCCHHHHHHH
Confidence 35678999999 99988 88877664 47877888887 8999999865 5555 7888777 8887653
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
++ + .++||++++.++|+-+.+.+|..|.+..+
T Consensus 146 ---~~-------~------~vivEe~I~~~~Eisv~v~~~~~G~~~~~ 177 (355)
T 3eth_A 146 ---CY-------G------ECIVEQGINFSGEVSLVGARGFDGSTVFY 177 (355)
T ss_dssp ---GT-------T------TEEEEECCCCSEEEEEEEEECTTSCEEEC
T ss_pred ---hh-------C------CEEEEEccCCCcEEEEEEEEcCCCCEEEE
Confidence 11 1 39999999988999999999987655443
No 54
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.10 E-value=1.3e-05 Score=76.55 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++.+ ++. +..++ +|+||||....+++ ||.+..+.+|...+.+
T Consensus 132 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~~~--~~~~~-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (343)
T 1e4e_A 132 DKSLTYIVAKNA-----GIATP--AFWVINKDD--RPV--AATFT-YPVFVKPARSGSSF----GVKKVNSADELDYAIE 195 (343)
T ss_dssp SHHHHHHHHHHT-----TCBCC--CEEEECTTC--CCC--GGGSC-SCEEEEESSCCTTT----TCEEECSGGGHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCcC--CEEEEechh--hhh--hhccC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 456789999999 99988 888776653 322 15675 89999998876555 6888889999988877
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.... -..+|||++++ ++|+.+.+..|+.+
T Consensus 196 ~~~~~----------~~~~lvEe~I~-G~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 196 SARQY----------DSKILIEQAVS-GCEVGCAVLGNSAA 225 (343)
T ss_dssp HHTTT----------CSSEEEEECCC-SEEEEEEEEEETTC
T ss_pred HHHhc----------CCcEEEEeCcC-CeEEEEEEEeCCCC
Confidence 76431 13599999998 78999999988755
No 55
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.06 E-value=6.7e-06 Score=79.89 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++.+...+..+...++ +|+||||....+++ ||.+..|.+|+.++.+
T Consensus 151 DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~eL~~a~~ 218 (373)
T 3lwb_A 151 DKEFTKKLLAAD-----GLPVG--AYAVLRPPRSTLHRQECERLG-LPVFVKPARGGSSI----GVSRVSSWDQLPAAVA 218 (373)
T ss_dssp BHHHHHHHHHHT-----TCCBC--CEEEECTTCCCCCHHHHHHHC-SCEEEEESBCSTTT----TCEEECSGGGHHHHHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CEEEEECcccchhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 346779999999 99988 888877654111122355676 89999998765544 7888899999988887
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~ 127 (344)
+.... . ..+|||++++ ++|+.+++..|+..
T Consensus 219 ~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~~~~~ 248 (373)
T 3lwb_A 219 RARRH-----D-----PKVIVEAAIS-GRELECGVLEMPDG 248 (373)
T ss_dssp HHHTT-----C-----SSEEEEECCE-EEEEEEEEEECTTS
T ss_pred HHHhc-----C-----CCEEEeCCCC-CeEEEEEEEECCCC
Confidence 76532 1 3599999999 79999999988754
No 56
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.05 E-value=1.7e-05 Score=76.33 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCH-----HhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-----SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQV 81 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~-----~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea 81 (344)
+-+..|++|+++ |||+| +...+++.+. +++.+.+++++ +|+||||....+++ ||.+..+.+|+
T Consensus 129 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el 196 (364)
T 2i87_A 129 DKLVMKQLFEHR-----GLPQL--PYISFLRSEYEKYEHNILKLVNDKLN-YPVFVKPANLGSSV----GISKCNNEAEL 196 (364)
T ss_dssp SHHHHHHHHHHH-----TCCCC--CEEEEEHHHHHHHHHHHHHHHHHHCC-SSEEEEESSCSSCT----TCEEESSHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEechhhcccchhHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHH
Confidence 456779999999 99988 8877765321 13445556776 89999998776555 78888999999
Q ss_pred HHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
..+.++.... -..+|||++++ +.|+.+.+..|+.
T Consensus 197 ~~a~~~~~~~----------~~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 197 KEGIKEAFQF----------DRKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp HHHHHHHHTT----------CSEEEEEECCC-CEEEEEEEEESSS
T ss_pred HHHHHHHHhc----------CCeEEEEeCcc-CeEEEEEEEcCCC
Confidence 8887766431 13699999999 6899999998864
No 57
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.03 E-value=8.4e-06 Score=86.25 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhc-cccCCCcEEEEeccccCcccCcCeEEEe----CCHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE-PWLSSSRLVVKPDMLFGKRGKSGLVALN----LDLAQVAE 83 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa-~~lg~~pvVvKaqv~~g~Rgk~GgV~l~----~s~eea~~ 83 (344)
..+|++|+++ |||+| ++.++++ .+++.+.+ +.+| +|+||||....+|| ||.++ .|.+++.+
T Consensus 491 ~~tk~lL~~~-----GIPvP--~~~~~~~--~~ea~~~~~~~~g-~PvVVKP~~g~~G~----GV~iv~~~v~~~eel~~ 556 (757)
T 3ln7_A 491 VVTKKVLQKA-----GFNVP--QSVEFTS--LEKAVASYALFEN-RAVVIKPKSTNYGL----GITIFQQGVQNREDFAK 556 (757)
T ss_dssp HHHHHHHHHH-----TCCCC--CEEEESC--HHHHHHGGGGSSS-SCEEEEESSCSTTT----TCEECSSCCCCHHHHHH
T ss_pred HHHHHHHHHC-----CcCCC--CEEEECC--HHHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEecCCCCCHHHHHH
Confidence 4579999999 99988 8887765 35775655 6776 89999999876665 88887 79999988
Q ss_pred HHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
+.+..... + ..++||++++ ++|+-+.+.-|+
T Consensus 557 al~~a~~~-----~-----~~vlVEefI~-G~Ei~v~Vlggk 587 (757)
T 3ln7_A 557 ALEIAFRE-----D-----KEVMVEDYLV-GTEYRFFVLGDE 587 (757)
T ss_dssp HHHHHHHH-----C-----SSEEEEECCC-SEEEEEEEETTE
T ss_pred HHHHHHhc-----C-----CcEEEEEcCC-CcEEEEEEECCE
Confidence 87766421 1 2499999998 689998887543
No 58
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.03 E-value=1.1e-05 Score=78.92 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|+++ |||+| +...+++. +++. +.+++ +|+||||....|+| ||.+..|.+|+.++.++
T Consensus 113 K~~~k~~l~~~-----gip~p--~~~~~~~~--~~~~--~~~~g-~P~vvKp~~g~gs~----Gv~~v~~~~el~~a~~~ 176 (425)
T 3vot_A 113 KNKTRSILQQN-----GLNTP--VFHEFHTL--ADLE--NRKLS-YPLVVKPVNGFSSQ----GVVRVDDRKELEEAVRK 176 (425)
T ss_dssp HHHHHHHHHHT-----TCCCC--CEEEESSG--GGGT--TCCCC-SSEEEEESCC---------CEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHC-----CCCCC--ceeccCcH--HHHH--HhhcC-CcEEEEECCCCCCC----CceEechHHHHHHHHHH
Confidence 46678999999 99988 88777654 3543 35676 89999998766666 89999999999999887
Q ss_pred Hhcccchh-cCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 88 RLGTEVEM-GGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 88 ~l~~~~~~-~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
+....... ......-..++||++++ +.|+-+.+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 177 VEAVNQRDLNRFVHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHTTSSHHHHHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHhhhhhhhhhhccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 75432110 00000124699999998 679988777664
No 59
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.00 E-value=4.1e-05 Score=72.52 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +...+++.+ + ++. .++ +|+||||....+++ ||.+..|.+|+.++.+
T Consensus 118 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~--~~~-~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el~~a~~ 180 (322)
T 2fb9_A 118 DKDLSKRVLAQA-----GVPVV--PWVAVRKGE--P--PVV-PFD-PPFFVKPANTGSSV----GISRVERFQDLEAALA 180 (322)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEETTS--C--CCC-CSC-SCEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEECch--h--hhh-ccC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 456789999999 99988 888877654 3 122 665 89999998775554 7888899999998887
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+.+.. -..+|||+++++.+|+.+++..|+.
T Consensus 181 ~~~~~----------~~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 181 LAFRY----------DEKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp HHTTT----------CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred HHHhc----------CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence 76431 1369999999944899999998764
No 60
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.96 E-value=2.4e-05 Score=73.63 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhc--cccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE--PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa--~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (344)
+-+..|++|+++ |||+| +... + .+++.+.. ..++ +|+|+||....|++ ||.+..|.+|+.++
T Consensus 114 dK~~~~~~l~~~-----gip~p--~~~~--~--~~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~ 177 (331)
T 2pn1_A 114 DKYTMYEYCLRQ-----GIAHA--RTYA--T--MASFEEALAAGEVQ-LPVFVKPRNGSASI----EVRRVETVEEVEQL 177 (331)
T ss_dssp BHHHHHHHHHHH-----TCCCC--CEES--S--HHHHHHHHHTTSSC-SCEEEEESBC----------------------
T ss_pred CHHHHHHHHHHc-----CCCCC--cEEe--c--HHHhhhhhhcccCC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHH
Confidence 456789999999 99988 6543 2 23554443 4665 89999998765544 78888888887765
Q ss_pred HHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc-CCCceE
Q 019240 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD-RLGCTI 130 (344)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D-r~~p~i 130 (344)
.+. ...++|||++++ .|+.+.+..| ..|.++
T Consensus 178 ~~~--------------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~ 209 (331)
T 2pn1_A 178 FSK--------------NTDLIVQELLVG-QELGVDAYVDLISGKVT 209 (331)
T ss_dssp -------------------CEEEEECCCS-EEEEEEEEECTTTCCEE
T ss_pred HHh--------------CCCeEEEecCCC-cEEEEEEEEecCCCeEE
Confidence 332 135999999994 9999999999 666554
No 61
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.95 E-value=6.1e-06 Score=79.59 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEecccc-CcccCcCeEEEeCCHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFV 85 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a 85 (344)
+-+..|++|+++ |||+| +...+++. ++ .+++++ +|+|+||.... ++| ||.+..|.+|+.++.
T Consensus 100 dK~~~~~~l~~~-----gip~p--~~~~~~~~--~~---~~~~~~-~P~vvKp~~~~y~g~----Gv~~v~~~~el~~~~ 162 (380)
T 3ax6_A 100 DKFVQKEFLKKN-----GIPVP--EYKLVKDL--ES---DVREFG-FPVVQKARKGGYDGR----GVFIIKNEKDLENAI 162 (380)
T ss_dssp SHHHHHHHHHHT-----TCCCC--CEEECSSH--HH---HHHTTC-SSEEEEESCCC---------EEEECSGGGGGGCC
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEeCCH--HH---HHHhcC-CCEEEEecCCCCCCC----CeEEECCHHHHHHHh
Confidence 346678999999 99888 87776553 34 345665 89999998765 666 888888887754331
Q ss_pred HHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEe
Q 019240 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (344)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~ 132 (344)
+ ..++|||+++.+.|+.+.+..|+.|.+..+
T Consensus 163 ~----------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~ 193 (380)
T 3ax6_A 163 K----------------GETYLEEFVEIEKELAVMVARNEKGEIACY 193 (380)
T ss_dssp C----------------SSEEEEECCCEEEEEEEEEEECSSCCEEEE
T ss_pred c----------------CCEEEEeccCCCeeEEEEEEECCCCCEEEE
Confidence 1 459999999977999999999977654433
No 62
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.95 E-value=2.8e-05 Score=72.00 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHh--------hccccCCCcEEEEeccccCcccCcCeEEEeCCH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN--------KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDL 78 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~--------aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ 78 (344)
+-+..|++|+++ |||+| +...+++. ++.+ .+++++ +|+|+||....+++ ||.+..+.
T Consensus 96 dK~~~~~~l~~~-----gi~~p--~~~~~~~~---~~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~~~----gv~~v~~~ 160 (306)
T 1iow_A 96 DKLRSKLLWQGA-----GLPVA--PWVALTRA---EFEKGLSDKQLAEISALG-LPVIVKPSREGSSV----GMSKVVAE 160 (306)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEEEHH---HHHHCCCTHHHHHHHTTC-SSEEEEETTCCTTT----TCEEESSG
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEEchh---hhhccchhhhhhHHhccC-CCEEEEeCCCCCCC----CEEEeCCH
Confidence 456778999999 99988 88777643 4433 445665 79999998876655 78888899
Q ss_pred HHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEE
Q 019240 79 AQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (344)
Q Consensus 79 eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~ 122 (344)
+|+.++.+++... -..++|||+++ +.|+.+.+.
T Consensus 161 ~el~~~~~~~~~~----------~~~~lvee~i~-g~e~~v~~~ 193 (306)
T 1iow_A 161 NALQDALRLAFQH----------DEEVLIEKWLS-GPEFTVAIL 193 (306)
T ss_dssp GGHHHHHHHHTTT----------CSEEEEEECCC-CCEEEEEEE
T ss_pred HHHHHHHHHHHhh----------CCCEEEEeCcC-CEEEEEEEE
Confidence 9998887776421 14699999999 789999887
No 63
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.79 E-value=7.6e-06 Score=74.65 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..+++|+++ |||+| +...+++. +++.+.+++++ +|+|+||..-.+++ ||.+..+.+|+.++.+
T Consensus 88 dK~~~~~~l~~~-----gi~~p--~~~~~~~~--~~~~~~~~~~~-~p~vvKp~~g~~~~----gv~~v~~~~el~~~~~ 153 (280)
T 1uc8_A 88 DKWATSVALAKA-----GLPQP--KTALATDR--EEALRLMEAFG-YPVVLKPVIGSWGR----LLAXXXXXXXXXXXXX 153 (280)
T ss_dssp BHHHHHHHHHHT-----TCCCC--CEEEESSH--HHHHHHHHHHC-SSEEEECSBCCBCS----HHHHHHHHHC------
T ss_pred CHHHHHHHHHHc-----CcCCC--CeEeeCCH--HHHHHHHHHhC-CCEEEEECCCCCcc----cceecccccccchhhh
Confidence 356778999999 99888 88777653 57766667776 79999998765544 7777777777777665
Q ss_pred HH--hcccchhcCCCcceeeEEEEeecCC-CceEEEEEE
Q 019240 87 GR--LGTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (344)
Q Consensus 87 ~~--l~~~~~~~g~~~~v~~vLVee~~~~-~~Elylgi~ 122 (344)
++ ++.. .-..++|||+++. +.|+.+.+.
T Consensus 154 ~~~~~~~~--------~~~~~lvqe~i~~~~~e~~v~v~ 184 (280)
T 1uc8_A 154 XKEVLGGF--------QHQLFYIQEYVEKPGRDIRVFVV 184 (280)
T ss_dssp ------CT--------TTTCEEEEECCCCSSCCEEEEEE
T ss_pred hHhhhccc--------CCCcEEEEeccCCCCceEEEEEE
Confidence 54 2110 1246999999996 678777765
No 64
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.61 E-value=0.00011 Score=71.32 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (344)
.-.|++|+++ |||+| +. .++. +++ + +|+||||.-..+|| ||.++.|.+|+.++++++
T Consensus 126 ~~~k~~l~~~-----GIptp--~~--~~~~--~e~-------~-~PvVVK~~~~a~Gk----Gv~v~~s~ee~~~a~~~~ 182 (361)
T 2r7k_A 126 SLEGKLLREA-----GLRVP--KK--YESP--EDI-------D-GTVIVKFPGARGGR----GYFIASSTEEFYKKAEDL 182 (361)
T ss_dssp HHHHHHHHHT-----TCCCC--CE--ESSG--GGC-------C-SCEEEECSCCCC-------EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----CcCCC--CE--eCCH--HHc-------C-CCEEEeeCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 4468899999 99988 53 3332 343 3 79999999887777 999999999999999988
Q ss_pred hcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 89 l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+..... +. .....++|||+++ +.|+.+....++.
T Consensus 183 ~~~~~~--~~-~~~~~viIEEfl~-G~e~s~~~f~~~~ 216 (361)
T 2r7k_A 183 KKRGIL--TD-EDIANAHIEEYVV-GTNFCIHYFYSPL 216 (361)
T ss_dssp HHTTSC--CH-HHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred Hhcccc--cc-CCCCeEEEEeccc-eEEeeEEEEeccc
Confidence 754321 10 1123599999999 6787644455544
No 65
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.15 E-value=0.0014 Score=61.19 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
-+..|++|+++ |||+| +. +++. ++ ++ +|+||||....+++ ||.+..|.+|+..+.++
T Consensus 101 K~~~~~~l~~~-----gip~p--~~--~~~~--~~-------l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~ 157 (334)
T 2r85_A 101 RNLERKWLKKA-----GIRVP--EV--YEDP--DD-------IE-KPVIVKPHGAKGGK----GYFLAKDPEDFWRKAEK 157 (334)
T ss_dssp HHHHHHHHHHT-----TCCCC--CB--CSCG--GG-------CC-SCEEEEECC----T----TCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCC--Cc--cCCh--HH-------cC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 45668889998 99988 65 3332 22 44 79999998776666 78889999999988877
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~ 126 (344)
+...... ..-..++|||+++ +.|+.+.+..+..
T Consensus 158 ~~~~~~~-----~~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 158 FLGIKRK-----EDLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HHCCCSG-----GGCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred HHhhccc-----CCCCcEEEEeccC-CceeEEEEeecCc
Confidence 7543100 0114699999999 6788766666654
No 66
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.58 E-value=0.0039 Score=58.18 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccC-CCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS-SSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 8 Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg-~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
-+..+++|++. |||+| +..++++. +++.+..++.+ ++|+|+||..-.|+. ..-||.+..+.++...
T Consensus 99 K~~~~~~l~~~-----gi~~P--~~~~~~~~--~~~~~~~~~~~~~~P~vvKP~~g~g~~-~s~gv~~v~~~~~l~~--- 165 (324)
T 1z2n_X 99 REEINALLIKN-----NIPIP--NSFSVKSK--EEVIQLLQSKQLILPFIVKPENAQGTF-NAHQMKIVLEQEGIDD--- 165 (324)
T ss_dssp HHHHHHHHHHT-----TCCCS--CEEEESSH--HHHHHHHHTTCSCSSEEEEESBCSSSS-GGGEEEEECSGGGGTT---
T ss_pred HHHHHHHHHHC-----CCCCC--CEEEeCCH--HHHHHHHHHcCCCCCEEEeeCCCCCCc-cceeeEEEeCHHHHhh---
Confidence 45568899998 99888 88777553 46655554432 379999998744431 1237877777655221
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCC-CceEEEEEE
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~-~~Elylgi~ 122 (344)
. -..++||++++. +.|+-+.+.
T Consensus 166 ------~--------~~~~lvqe~i~~~g~~~~v~v~ 188 (324)
T 1z2n_X 166 ------I--------HFPCLCQHYINHNNKIVKVFCI 188 (324)
T ss_dssp ------C--------CSSEEEEECCCCTTCEEEEEEE
T ss_pred ------c--------CCCEEEEEccCCCCcEEEEEEE
Confidence 1 124899999985 567777654
No 67
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=96.26 E-value=0.0085 Score=57.00 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHH
Q 019240 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (344)
Q Consensus 7 ~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (344)
+-+..|++|+++ |||+| +. ..++ +|+||||....|+| ||.+..|.++...
T Consensus 103 dK~~~k~~l~~~-----gip~~--~~---------------~~ig-~P~vvKp~~g~g~~----gv~~v~~~~~~~~--- 152 (363)
T 4ffl_A 103 DKKKSKDYFKSI-----GVPTP--QD---------------RPSK-PPYFVKPPCESSSV----GARIIYDDKDLEG--- 152 (363)
T ss_dssp SHHHHHHHHHHT-----TCCCC--CB---------------SCSS-SCEEEECSSCCTTT----TCEEEC------C---
T ss_pred CHHHHHHHHHhc-----CCCCC--Cc---------------eecC-CCEEEEECCCCCCc----CeEEeccHHHhhh---
Confidence 446789999999 99887 32 1244 89999998766655 7788877665421
Q ss_pred HHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceE
Q 019240 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (344)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~i 130 (344)
....+++|++++ +.|+-+.+..|..+.++
T Consensus 153 --------------~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~ 181 (363)
T 4ffl_A 153 --------------LEPDTLVEEYVE-GEVVSLEVVGDGSHFAV 181 (363)
T ss_dssp --------------CCTTCEEEECCC-SEEEEEEEEEESSCEEE
T ss_pred --------------hccchhhhhhcc-CcEEEEEEEEECCeEEE
Confidence 123478999998 78999999998765443
No 68
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.24 E-value=0.016 Score=54.84 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCCCc---ccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 11 SKRLLKEHLKRLAGL---DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 11 ak~lL~~~~~~~~GI---~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
..++|++. |+ |+| +..... +..+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++++....
T Consensus 121 ~~~~l~~~-----gi~~~P~~--~~~~~~--~~~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lv~~~~~~~~~~~~ 183 (309)
T 1i7n_A 121 MVAIFKTL-----GGEKFPLI--EQTYYP--NHRE---MLTLPT-FPVVVKIGHAHSGM----GKVKVENHYDFQDIASV 183 (309)
T ss_dssp HHHHHHHH-----CTTTSCBC--CCEEES--SGGG---GSSCCC-SSEEEEESSCSTTT----TEEEECSHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCC--CEEeeC--Chhh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHH
Confidence 45667777 87 543 433332 2223 345565 89999987655556 89999999998877765
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
+... + ..+++||+++.++.+.+.+.-+
T Consensus 184 ~~~~-----~-----~~~~vQefI~~g~DiRv~VvGg 210 (309)
T 1i7n_A 184 VALT-----Q-----TYATAEPFIDAKYDIRVQKIGN 210 (309)
T ss_dssp HHHH-----T-----CCEEEEECCCEEEEEEEEEETT
T ss_pred Hhcc-----C-----CeEEEEeecCCCceEEEEEECC
Confidence 4321 1 3488999999777777766633
No 69
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=95.67 E-value=0.032 Score=53.62 Aligned_cols=87 Identities=9% Similarity=-0.028 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcCCCc---ccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 11 SKRLLKEHLKRLAGL---DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 11 ak~lL~~~~~~~~GI---~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
...+|++. |+ |+| +.....+. .+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++++....
T Consensus 138 ~l~~l~~~-----gi~~~P~~--~~t~~~~~--~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lve~~~~~~~~~~~ 200 (344)
T 2p0a_A 138 LIKIFHSL-----GPEKFPLV--EQTFFPNH--KP---MVTAPH-FPVVVKLGHAHAGM----GKIKVENQLDFQDITSV 200 (344)
T ss_dssp HHHHHHHH-----CTTTSCBC--CCEEESSS--TT---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHH
T ss_pred HHHHHHHC-----CCCCCCCC--CEEecCch--hh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHH
Confidence 45666777 87 643 43333322 22 344565 89999987655566 89999999998877655
Q ss_pred HhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
+... + ..+++||+++.++.+.+.+.-+
T Consensus 201 ~~~~-----~-----~~~~vQefI~~g~DiRv~VVGg 227 (344)
T 2p0a_A 201 VAMA-----K-----TYATTEAFIDSKYDIRIQKIGS 227 (344)
T ss_dssp HHHH-----T-----CCEEEEECCCEEEEEEEEEETT
T ss_pred Hhcc-----C-----CeEEEEeccCCCccEEEEEECC
Confidence 4321 1 2488999999777777766633
No 70
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=95.36 E-value=0.051 Score=53.51 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCCCc-ccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHh
Q 019240 11 SKRLLKEHLKRLAGL-DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (344)
Q Consensus 11 ak~lL~~~~~~~~GI-~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (344)
.-.+|++. |+ .+|.++..... +..+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++++....+.
T Consensus 233 ~l~ll~~~-----gi~~iP~t~~t~~~--~~~~---~i~~~g-~PvVvKp~~GS~G~----GV~lve~~~~l~~ii~~~~ 297 (422)
T 1pk8_A 233 MVRLHKKL-----GTEEFPLIDQTFYP--NHKE---MLSSTT-YPVVVKMGHAHSGM----GKVKVDNQHDFQDIASVVA 297 (422)
T ss_dssp HHHHHHHH-----CTTTSCBCCCEEES--SGGG---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCCceEecC--chhh---hhhccC-CCEEEEeCCCCcee----CeEEeCCHHHHHHHHHHHh
Confidence 34566777 87 22321333332 2122 344555 89999987655566 8999999999887776543
Q ss_pred cccchhcCCCcceeeEEEEeecCCCceEEEEEEEc
Q 019240 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (344)
Q Consensus 90 ~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~D 124 (344)
... ..++|||+++.++.+.+.+.-+
T Consensus 298 ~~~----------~~~~vQEfI~~g~DIRv~VVGg 322 (422)
T 1pk8_A 298 LTK----------TYATAEPFIDAKYDVRVQKIGQ 322 (422)
T ss_dssp HHT----------SCEEEEECCCEEEEEEEEEETT
T ss_pred ccC----------ceEEEEeecCCCceEEEEEECC
Confidence 211 3489999999777777766633
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=95.07 E-value=0.007 Score=57.59 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhc
Q 019240 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLG 90 (344)
Q Consensus 11 ak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~ 90 (344)
-|++|++. |||+| +.+ . ++ ++ +++ +||+|||.-..||| |+.+..| +|+..+++.+
T Consensus 102 ~~~~l~~~-----Gip~P--~~~--~-~e--e~-----~i~-~PviVKp~~g~ggk----G~~~v~~-eel~~~~~~~-- 156 (320)
T 2pbz_A 102 QDKALEGA-----GIPRV--EVV--E-PE--DA-----KPD-ELYFVRIEGPRGGS----GHFIVEG-SELEERLSTL-- 156 (320)
T ss_dssp HHHHHHHH-----TCCBC--CBC--C-SC--CC-----CSS-CCEEEECC----------------C-EECSCCCC----
T ss_pred HHHHHHHC-----CcCCC--Cee--C-Hh--Hc-----CcC-CcEEEEECCCCCCC----CEEEECh-HHHHHHHHhc--
Confidence 36789998 99998 543 1 22 33 465 89999988765666 7888888 8765432221
Q ss_pred ccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCC-CceEE
Q 019240 91 TEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTIS 131 (344)
Q Consensus 91 ~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~-~p~il 131 (344)
. ..++|||+++ +.+++..+..++. +.+.+
T Consensus 157 ---------~--~~~IiEEfI~-g~~~~~~~f~~~~~g~~e~ 186 (320)
T 2pbz_A 157 ---------E--EPYRVERFIP-GVYLYVHFFYSPILERLEL 186 (320)
T ss_dssp -------------CCEEEECCC-SCEEEEEEEEETTTTEEEE
T ss_pred ---------C--CCEEEEeeec-eEecceeEEeccccCceeE
Confidence 0 3589999999 6777766777765 43433
No 72
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=94.59 E-value=0.051 Score=52.06 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCcccCCCceEEeecCCHHhHHhhc--cccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCc
Q 019240 23 AGLDLQICSAQVTESTDFSELTNKE--PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKG 100 (344)
Q Consensus 23 ~GI~vp~~~~~~~~~~~~~ea~~aa--~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~ 100 (344)
+|||+| +..++.+.+.+++.+.. ..++ +|+|+||..-.|.. +-||.+..+.++... + .
T Consensus 134 ~gIp~P--~t~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~Gs~--s~~v~~v~~~~~l~~---------~---~--- 193 (346)
T 2q7d_A 134 DRICSP--PFMELTSLCGDDTMRLLEKNGLT-FPFICKTRVAHGTN--SHEMAIVFNQEGLNA---------I---Q--- 193 (346)
T ss_dssp TTEECC--CEEEECSCCCTTHHHHHHHTTCC-SSEEEECSBCSSTT--CCEEEEECSGGGTTC-----------------
T ss_pred CCCCCC--CEEEEeCCCHHHHHHHHHhcCCC-CCEEEEecCCCcce--eeeeEEecCHHHHHh---------c---C---
Confidence 489888 88887653122443332 2454 89999997643333 347888877665432 1 1
Q ss_pred ceeeEEEEeecCC-CceEEEEEEE
Q 019240 101 PITTFIVEPFVPH-NQEYYLSIVS 123 (344)
Q Consensus 101 ~v~~vLVee~~~~-~~Elylgi~~ 123 (344)
..++|||++++ +.|+-+.+.-
T Consensus 194 --~~~lvQefI~~~G~dirv~VvG 215 (346)
T 2q7d_A 194 --PPCVVQNFINHNAVLYKVFVVG 215 (346)
T ss_dssp --CCEEEEECCCCTTEEEEEEEET
T ss_pred --CCEEEEEeeCCCCeEEEEEEEC
Confidence 23999999985 6788887763
No 73
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=94.16 E-value=0.043 Score=50.23 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred ceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeC-CHHHHHHHHHHHhcccchhcCCCcceeeEEEEe
Q 019240 31 SAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNL-DLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEP 109 (344)
Q Consensus 31 ~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~-s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee 109 (344)
+...+++ .+++.+.+++++ |+|+||..-.+|+ ||.+.. +.+++..+.+.+... + -..++|||
T Consensus 137 ~t~~~~~--~~~~~~~~~~~~--p~vvKP~~g~~g~----Gv~~v~~~~~~l~~~~~~~~~~-----~----~~~~lvqe 199 (316)
T 1gsa_A 137 ETLVTRN--KAQLKAFWEKHS--DIILKPLDGMGGA----SIFRVKEGDPNLGVIAETLTEH-----G----TRYCMAQN 199 (316)
T ss_dssp CEEEESC--HHHHHHHHHHHS--SEEEECSSCCTTT----TCEEECTTCTTHHHHHHHHTTT-----T----TSCEEEEE
T ss_pred CeEEeCC--HHHHHHHHHHcC--CEEEEECCCCCcc----cEEEecCChHHHHHHHHHHHhc-----C----CceEEEec
Confidence 7766654 356666666664 9999998766666 677776 777777665544211 1 13599999
Q ss_pred ecCC--CceEEEEEE
Q 019240 110 FVPH--NQEYYLSIV 122 (344)
Q Consensus 110 ~~~~--~~Elylgi~ 122 (344)
+++. ..|+.+.+.
T Consensus 200 ~i~~~~~~~~~v~~~ 214 (316)
T 1gsa_A 200 YLPAIKDGDKRVLVV 214 (316)
T ss_dssp CCGGGGGCEEEEEEE
T ss_pred ccCCCCCCCEEEEEE
Confidence 9996 567665543
No 74
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=91.99 E-value=0.23 Score=46.26 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcc
Q 019240 12 KRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGT 91 (344)
Q Consensus 12 k~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (344)
|..+++++ +. |||+| +..+ ..++ +|+|+||..-.|++ ||.+..+
T Consensus 111 K~~~~~~l-~~-Gip~p--~~~~-------------~~~~-~P~vvKP~~g~gs~----Gv~~v~~-------------- 154 (305)
T 3df7_A 111 KWELYKKL-RG-EVQVP--QTSL-------------RPLD-CKFIIKPRTACAGE----GIGFSDE-------------- 154 (305)
T ss_dssp HHHHHHHH-TT-TSCCC--CEES-------------SCCS-SSEEEEESSCC--------CBCCSS--------------
T ss_pred HHHHHHHH-Hh-CCCCC--CEec-------------ccCC-CCEEEEeCCCCCCC----CEEEEec--------------
Confidence 44555543 33 88887 6542 1344 89999998765555 5666655
Q ss_pred cchhcCCCcceeeEEEEeecCCCceEEEEEEEcC
Q 019240 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (344)
Q Consensus 92 ~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr 125 (344)
. . ..++||++++ +.|+.+.+..+.
T Consensus 155 -~---~-----~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 -V---P-----DGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp -C---C-----TTEEEEECCC-SEEEEEEEEESS
T ss_pred -C---C-----CCEEEEeccC-CcEEEEEEEeCC
Confidence 1 1 2489999999 799999988753
No 75
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=87.18 E-value=0.98 Score=45.14 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=47.1
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcc----------------eeeecCC------C----CCHHHHHHHHHHHhc
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELG----------------NYAEYSG------A----PNEEEVLQYARVVID 322 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pA----------------NFlD~GG------~----a~~~~v~~a~~~il~ 322 (344)
..+|+.+.||+|++..+.|++.. | ++.+ |..|++. + .+.+...++++.++.
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-g--l~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~d~~~~~~al~~~l~ 325 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-H--LGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGA 325 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-H--TTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHHHHHGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-C--CCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCCCHHHHHHHHHHHhc
Confidence 34799999999999999999876 3 3322 6666663 1 267789999999999
Q ss_pred ccCccEEEE
Q 019240 323 VRDFTNFGL 331 (344)
Q Consensus 323 d~~v~~~~~ 331 (344)
||.+++++.
T Consensus 326 D~~vd~vlv 334 (480)
T 3dmy_A 326 KPQVRVLLL 334 (480)
T ss_dssp CTTEEEEEE
T ss_pred CCCCCEEEE
Confidence 999998755
No 76
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=71.54 E-value=5.1 Score=38.03 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCC--CCHHHHHHHHHHHhcccCccEEEEe--ecce
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDVRDFTNFGLF--FGTQ 336 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~--a~~~~v~~a~~~il~d~~v~~~~~~--~~~~ 336 (344)
.|+||++.--++|+...+|.+...| ---..|.-+||. +.. .....++.+.+||..+.++++ .||.
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g--~G~S~~VsiGn~~~~d~-~~~D~l~~~~~Dp~T~~I~l~gEi~g~ 236 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTT--DGVYEGVAIGGDRYPGS-TFMDHVLRYQDTPGVKMIVVLGEIGGT 236 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHS--SCEEEEEECCSSSSCSS-CHHHHHHHHHTCTTCCEEEEEEESSSS
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcC--CCeEEEEECCCCccCCC-CHHHHHHHHhcCCCCCEEEEEEecCCh
Confidence 7999999999999999999998854 346789999998 654 688889999999999999887 6665
No 77
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=67.27 E-value=11 Score=37.53 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=54.7
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCC-----CHHHHHHHHHHHhcccCccEEEEee
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDVRDFTNFGLFF 333 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a-----~~~~v~~a~~~il~d~~v~~~~~~~ 333 (344)
.|+||++.--++++...+|.+.. .|---..|.-+||.+ ..-.+...++.+.+||..+.++++-
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~--~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~ 179 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIAL--AGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVS 179 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHH--TTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred CCCEEEEeccHHHHHHHHHHHHH--cCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 79999999999999999999998 455588899999993 4558999999999999999987654
No 78
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=60.38 E-value=13 Score=34.27 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=51.9
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++++...+|.+... |--...|.=+||.+. .-.....++.+.+||..+.++++
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~ 212 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKA--GFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMI 212 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 699999999999999999999984 445788999999983 23667888999999999987654
No 79
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=58.72 E-value=11 Score=35.01 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++++...+|.+... |--...|.=+||.+. .-.....++.+.+||..+.++++
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~ 214 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQV--GLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILI 214 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCEEEEecchHHHHHHHHHHHhc--CCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 699999999999999999999884 445888999999973 33678889999999999987654
No 80
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=57.87 E-value=13 Score=34.15 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++++...+|.+... |--...|.=+||.+. .-+....++.+.+||..+.++++
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~ 206 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQA--GLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLI 206 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 699999999999999999999884 445788999999983 23677888999999999987665
No 81
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=55.45 E-value=15 Score=33.90 Aligned_cols=62 Identities=8% Similarity=0.041 Sum_probs=51.8
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++++...+|.+... |--...|.=+||.+. .-.....++.+.+||..+.++++
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~ 213 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQ--GIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLI 213 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 699999999999999999999884 445788999999983 12567888999999999987654
No 82
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=53.88 E-value=17 Score=35.72 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=52.8
Q ss_pred CcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHHHHHHhcccCccEEEEe
Q 019240 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 270 G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
|+||++.--++++...+|.+... |--...|.=+||.+.. .+...++.+.+||..+.++++
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~--g~G~s~~vs~G~~~~~-~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKE--DIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHT--TCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc--CCCeeEEEECCCcCCC-CHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999984 4447789999999865 888999999999999988765
No 83
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=52.07 E-value=7.5 Score=36.71 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCC----------HHhHHh-hccccCCCcEEEEecc
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTD----------FSELTN-KEPWLSSSRLVVKPDM 61 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~----------~~ea~~-aa~~lg~~pvVvKaqv 61 (344)
..+.++|++. |||+| +..++.... .+++.+ ..+.++ +|+|+||..
T Consensus 99 ~~~~~iL~~~-----gIPtP--~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~-kPfVeKPv~ 154 (330)
T 3t7a_A 99 REVYSILQAE-----GILLP--RYAILNRDPNNPKECNLIEGEDHVEVNGEVFQ-KPFVEKPVS 154 (330)
T ss_dssp HHHHHHHHHT-----TCCCC--CEEEECCBTTBGGGSSEEECSSEEEETTEEEE-SSEEEEESB
T ss_pred HHHHHHHHHc-----CCCCC--CEEEEeCCCCCccccceeccchhhhhcccccc-CCeeEcccc
Confidence 4567899999 99998 877765421 011222 234554 899999875
No 84
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=50.14 E-value=17 Score=33.24 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=50.4
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCC-HHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~-~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||.+.--+.++...+|.+.. .|--...|.-+||.+. .-.....++.+.+||..+.++++
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~--~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~ 206 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTD--YGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMI 206 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHH--TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHh--cCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 69999999888888888999988 4445777889999883 23678889999999999987654
No 85
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=32.62 E-value=47 Score=35.29 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=51.2
Q ss_pred CCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCC-CHHHHHHHHHHHhcccCccEEEEe
Q 019240 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDVRDFTNFGLF 332 (344)
Q Consensus 269 ~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a-~~~~v~~a~~~il~d~~v~~~~~~ 332 (344)
.|+||++.--++|+...+|.+...|.| -.-|.=+||.+ ..-.....++.+.+||..+.++++
T Consensus 654 ~G~VgiVSqSGal~~~i~~~~~~~g~G--~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly 716 (829)
T 3pff_A 654 PGSVAYVSRSGGMSNELNNIISRTTDG--VYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVL 716 (829)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSC--EEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEE
T ss_pred CCcEEEEechhHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEE
Confidence 799999999999999999999885543 56789999984 223678889999999999987664
No 86
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=26.72 E-value=32 Score=33.38 Aligned_cols=60 Identities=12% Similarity=-0.035 Sum_probs=37.5
Q ss_pred Cc-EEEEeccccCcccCcCeEEEeCCHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEE
Q 019240 53 SR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (344)
Q Consensus 53 ~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Ely 118 (344)
.| |+|||+.-+=|- ||..+.|.+|+...-++-..+.... ..+-.|+.|+|||-+. ..|.+
T Consensus 277 ~PfV~VKADaGTYGM----GImtV~s~~ev~~LNrK~RnKM~~~-Keg~~v~~VIIQEGV~-T~E~~ 337 (432)
T 3k1t_A 277 EPFVIVKADAGTYGM----GIMTVKSADDVRDLNRKQRNKMSVV-KEGLKVSEVILQEGVY-TFEHL 337 (432)
T ss_dssp CCCEEEEEECGGGCE----EEEEESSGGGGSSCCHHHHHHHHCS-SSSSCCCEEEEEECCC-CCEEE
T ss_pred CceEEEEcCCCCCCc----eEEEecCHHHHHHHhHHhhhhhhhc-cCCCccceEEEecCcc-hhhhh
Confidence 34 689998643233 8999999999865333333222211 1123899999999998 45544
No 87
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.55 E-value=1e+02 Score=22.98 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccC-CCcEEEEeccccCcccCcCeEEEeCCHHHHHHHHHH
Q 019240 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS-SSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (344)
Q Consensus 9 yqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg-~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (344)
..+|++|++. ||+.- . .-. +.+ .++.+...++. |..-| ||+.++ -|-|..+.+++|.+++.++
T Consensus 18 ~~aK~~L~~~-----gi~y~--~-idi-~~d-~~~~~~~~~~~~G~~tV--P~I~i~----Dg~~l~~~~~~el~~~L~e 81 (92)
T 2lqo_A 18 LRLKTALTAN-----RIAYD--E-VDI-EHN-RAAAEFVGSVNGGNRTV--PTVKFA----DGSTLTNPSADEVKAKLVK 81 (92)
T ss_dssp HHHHHHHHHT-----TCCCE--E-EET-TTC-HHHHHHHHHHSSSSSCS--CEEEET----TSCEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCceE--E-EEc-CCC-HHHHHHHHHHcCCCCEe--CEEEEe----CCEEEeCCCHHHHHHHHHH
Confidence 4789999999 98652 2 222 223 23434333331 11111 333331 1235556799999999888
Q ss_pred Hhccc
Q 019240 88 RLGTE 92 (344)
Q Consensus 88 ~l~~~ 92 (344)
+.|-.
T Consensus 82 l~gL~ 86 (92)
T 2lqo_A 82 IAGLE 86 (92)
T ss_dssp HHCCS
T ss_pred hcCCc
Confidence 87743
Done!