Query 019243
Match_columns 344
No_of_seqs 97 out of 103
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13525 YfiO: Outer membrane 98.5 1.3E-06 2.8E-11 77.8 10.6 83 167-250 4-86 (203)
2 PF13432 TPR_16: Tetratricopep 98.4 2.2E-06 4.8E-11 62.0 8.3 63 172-238 1-63 (65)
3 PF14559 TPR_19: Tetratricopep 98.4 1.3E-06 2.8E-11 63.2 6.5 61 178-242 1-62 (68)
4 PF13512 TPR_18: Tetratricopep 98.3 4.3E-06 9.3E-11 73.8 9.6 82 168-250 10-91 (142)
5 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.8E-05 8.3E-10 59.1 11.0 68 170-238 4-71 (119)
6 PRK10866 outer membrane biogen 98.0 3E-05 6.6E-10 71.9 9.9 84 167-251 31-114 (243)
7 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.2E-09 55.8 9.7 79 168-247 39-117 (119)
8 PRK10803 tol-pal system protei 97.8 0.00017 3.6E-09 68.3 11.3 80 170-250 182-261 (263)
9 PF13414 TPR_11: TPR repeat; P 97.7 0.00015 3.3E-09 52.7 6.9 66 167-236 2-68 (69)
10 PF09976 TPR_21: Tetratricopep 97.7 0.00096 2.1E-08 55.9 12.7 87 162-249 5-91 (145)
11 PRK10803 tol-pal system protei 97.7 0.0009 1.9E-08 63.4 13.7 78 169-247 143-221 (263)
12 TIGR03302 OM_YfiO outer membra 97.6 0.0005 1.1E-08 60.5 10.3 77 168-245 33-109 (235)
13 PF13371 TPR_9: Tetratricopept 97.6 0.00063 1.4E-08 49.8 8.7 71 175-249 2-72 (73)
14 TIGR03302 OM_YfiO outer membra 97.5 0.00098 2.1E-08 58.6 10.8 67 171-238 169-235 (235)
15 cd00189 TPR Tetratricopeptide 97.4 0.00095 2.1E-08 45.7 7.0 65 171-239 3-67 (100)
16 PRK15359 type III secretion sy 97.3 0.0024 5.3E-08 54.2 10.4 81 168-252 58-142 (144)
17 TIGR02552 LcrH_SycD type III s 97.3 0.0048 1E-07 49.5 11.4 69 169-241 52-120 (135)
18 COG4105 ComL DNA uptake lipopr 97.2 0.0024 5.2E-08 61.4 9.4 81 168-249 34-114 (254)
19 PLN03088 SGT1, suppressor of 97.1 0.0058 1.3E-07 59.5 11.3 82 168-253 36-118 (356)
20 PF09976 TPR_21: Tetratricopep 97.0 0.0072 1.6E-07 50.7 10.2 65 168-233 48-112 (145)
21 PF13424 TPR_12: Tetratricopep 97.0 0.0028 6E-08 47.2 6.9 67 167-233 4-73 (78)
22 PF12895 Apc3: Anaphase-promot 97.0 0.0014 3E-08 50.1 5.3 50 181-232 2-51 (84)
23 PF13525 YfiO: Outer membrane 97.0 0.0057 1.2E-07 54.6 9.5 84 169-253 43-137 (203)
24 PRK15359 type III secretion sy 97.0 0.0042 9E-08 52.8 8.2 64 171-238 27-90 (144)
25 PF03704 BTAD: Bacterial trans 96.9 0.021 4.5E-07 47.4 12.0 75 171-249 65-146 (146)
26 cd00189 TPR Tetratricopeptide 96.9 0.0061 1.3E-07 41.7 7.3 64 170-237 36-99 (100)
27 PRK11788 tetratricopeptide rep 96.8 0.0064 1.4E-07 56.7 8.9 81 146-238 20-100 (389)
28 PF12688 TPR_5: Tetratrico pep 96.8 0.0095 2.1E-07 50.7 9.0 78 170-248 3-80 (120)
29 CHL00033 ycf3 photosystem I as 96.7 0.013 2.8E-07 49.9 9.1 87 150-238 18-104 (168)
30 TIGR02552 LcrH_SycD type III s 96.6 0.013 2.7E-07 47.1 8.2 73 168-244 17-90 (135)
31 COG1729 Uncharacterized protei 96.6 0.012 2.6E-07 56.9 9.0 67 171-238 144-210 (262)
32 TIGR02521 type_IV_pilW type IV 96.5 0.029 6.2E-07 46.2 9.7 59 171-233 68-126 (234)
33 PF13174 TPR_6: Tetratricopept 96.5 0.0048 1E-07 38.8 4.0 33 207-239 1-33 (33)
34 PRK10866 outer membrane biogen 96.5 0.032 7E-07 51.9 11.0 82 170-252 71-170 (243)
35 TIGR02917 PEP_TPR_lipo putativ 96.5 0.016 3.4E-07 57.5 9.2 66 169-238 23-88 (899)
36 PLN03088 SGT1, suppressor of 96.4 0.036 7.7E-07 54.1 11.4 65 170-238 4-68 (356)
37 TIGR03504 FimV_Cterm FimV C-te 96.3 0.011 2.3E-07 43.0 5.2 43 209-252 2-44 (44)
38 PRK02603 photosystem I assembl 96.3 0.043 9.4E-07 47.2 9.8 74 165-239 32-105 (172)
39 TIGR00990 3a0801s09 mitochondr 96.3 0.031 6.8E-07 57.2 10.4 70 164-238 123-192 (615)
40 COG3063 PilF Tfp pilus assembl 96.2 0.034 7.4E-07 53.6 9.7 70 165-238 32-101 (250)
41 PF12895 Apc3: Anaphase-promot 96.1 0.0098 2.1E-07 45.4 4.7 57 170-231 27-83 (84)
42 PRK10370 formate-dependent nit 96.1 0.17 3.6E-06 45.6 13.2 67 168-238 107-176 (198)
43 COG1729 Uncharacterized protei 96.1 0.047 1E-06 52.9 10.2 82 168-250 178-259 (262)
44 TIGR02521 type_IV_pilW type IV 95.9 0.17 3.6E-06 41.7 11.2 65 170-238 137-201 (234)
45 PF13428 TPR_14: Tetratricopep 95.8 0.02 4.4E-07 39.6 4.6 34 207-240 2-35 (44)
46 PRK15179 Vi polysaccharide bio 95.7 0.074 1.6E-06 57.2 10.5 77 168-249 154-230 (694)
47 PRK15179 Vi polysaccharide bio 95.7 0.046 9.9E-07 58.7 8.9 63 172-238 124-186 (694)
48 PRK10747 putative protoheme IX 95.6 0.053 1.1E-06 53.1 8.6 61 168-233 328-388 (398)
49 PRK11788 tetratricopeptide rep 95.6 0.06 1.3E-06 50.3 8.4 70 169-241 215-284 (389)
50 PRK15363 pathogenicity island 95.5 0.09 2E-06 47.5 9.0 64 166-233 33-96 (157)
51 PRK09782 bacteriophage N4 rece 95.5 0.078 1.7E-06 59.0 10.0 70 166-239 42-111 (987)
52 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.1 2.3E-06 54.0 10.2 66 169-236 76-141 (453)
53 cd05804 StaR_like StaR_like; a 95.3 0.14 3E-06 47.4 9.7 68 170-237 150-217 (355)
54 PRK11189 lipoprotein NlpI; Pro 95.3 0.13 2.7E-06 48.5 9.5 69 168-240 98-166 (296)
55 PRK15174 Vi polysaccharide exp 95.3 0.16 3.4E-06 53.5 11.0 66 170-239 286-351 (656)
56 TIGR00540 hemY_coli hemY prote 95.2 0.25 5.5E-06 48.4 11.7 79 171-252 121-200 (409)
57 PRK14574 hmsH outer membrane p 95.0 0.13 2.7E-06 56.5 9.6 71 175-252 109-179 (822)
58 COG3071 HemY Uncharacterized e 95.0 0.43 9.2E-06 48.9 12.7 61 167-232 327-387 (400)
59 PRK11447 cellulose synthase su 94.8 0.18 3.8E-06 56.2 10.4 63 173-239 274-336 (1157)
60 PF07719 TPR_2: Tetratricopept 94.8 0.094 2E-06 33.2 5.0 32 169-200 2-33 (34)
61 PRK10049 pgaA outer membrane p 94.8 0.19 4.2E-06 53.5 10.2 86 169-258 394-479 (765)
62 PRK10370 formate-dependent nit 94.7 0.24 5.2E-06 44.6 9.3 68 168-239 73-143 (198)
63 PF12688 TPR_5: Tetratrico pep 94.6 0.3 6.5E-06 41.7 9.2 63 170-233 40-102 (120)
64 TIGR00540 hemY_coli hemY prote 94.6 0.28 6E-06 48.2 10.2 60 172-236 157-216 (409)
65 PF13429 TPR_15: Tetratricopep 94.6 0.28 6.2E-06 44.8 9.5 78 171-252 183-261 (280)
66 PRK11447 cellulose synthase su 94.6 0.46 1E-05 53.0 12.8 65 171-239 464-528 (1157)
67 TIGR00990 3a0801s09 mitochondr 94.4 0.22 4.8E-06 51.1 9.4 66 169-238 400-465 (615)
68 PRK15174 Vi polysaccharide exp 94.4 0.2 4.3E-06 52.7 9.0 68 170-241 112-179 (656)
69 PRK12370 invasion protein regu 94.3 0.24 5.2E-06 50.7 9.2 66 170-239 340-405 (553)
70 PRK15331 chaperone protein Sic 94.2 0.15 3.2E-06 46.5 6.8 85 166-254 35-153 (165)
71 KOG2376 Signal recognition par 94.2 0.15 3.3E-06 54.6 7.6 68 167-234 174-252 (652)
72 PRK10049 pgaA outer membrane p 94.2 0.26 5.6E-06 52.6 9.5 64 172-239 363-426 (765)
73 TIGR02917 PEP_TPR_lipo putativ 94.1 0.58 1.3E-05 46.6 11.1 61 175-239 743-803 (899)
74 cd05804 StaR_like StaR_like; a 93.9 0.24 5.1E-06 45.9 7.7 63 171-237 117-179 (355)
75 PRK10747 putative protoheme IX 93.9 0.72 1.6E-05 45.3 11.4 61 173-237 158-218 (398)
76 PRK12370 invasion protein regu 93.9 0.36 7.8E-06 49.5 9.7 65 168-236 372-436 (553)
77 PRK14574 hmsH outer membrane p 93.6 0.42 9.1E-06 52.5 10.1 79 169-254 137-215 (822)
78 PRK11189 lipoprotein NlpI; Pro 93.5 0.62 1.3E-05 43.9 9.7 69 168-240 64-132 (296)
79 PRK10153 DNA-binding transcrip 93.4 0.33 7.2E-06 50.4 8.5 73 173-250 425-497 (517)
80 COG2956 Predicted N-acetylgluc 93.4 0.65 1.4E-05 47.2 10.1 65 165-233 177-241 (389)
81 PRK02603 photosystem I assembl 93.4 0.71 1.5E-05 39.7 9.2 62 168-233 72-147 (172)
82 PF12862 Apc5: Anaphase-promot 93.2 0.39 8.5E-06 38.3 6.8 77 176-252 6-90 (94)
83 PF13174 TPR_6: Tetratricopept 93.2 0.18 3.9E-06 31.5 3.9 32 170-201 2-33 (33)
84 PRK15363 pathogenicity island 93.1 0.74 1.6E-05 41.6 9.2 78 173-254 74-155 (157)
85 PRK09782 bacteriophage N4 rece 93.1 0.63 1.4E-05 52.1 10.5 64 172-239 647-710 (987)
86 PF13512 TPR_18: Tetratricopep 92.9 2.2 4.8E-05 38.0 11.8 79 168-247 47-140 (142)
87 COG3118 Thioredoxin domain-con 92.5 0.58 1.3E-05 46.5 8.3 75 149-233 121-195 (304)
88 PF03704 BTAD: Bacterial trans 92.5 1.9 4.2E-05 35.6 10.3 74 167-240 5-96 (146)
89 PF13429 TPR_15: Tetratricopep 92.5 0.94 2E-05 41.4 9.2 72 170-243 112-184 (280)
90 COG3629 DnrI DNA-binding trans 92.4 1.5 3.2E-05 43.0 10.9 59 171-233 156-214 (280)
91 PF08631 SPO22: Meiosis protei 92.3 2.2 4.7E-05 40.2 11.5 81 165-245 32-127 (278)
92 PF14938 SNAP: Soluble NSF att 92.2 2.7 5.8E-05 39.4 12.0 80 168-247 114-197 (282)
93 PF11817 Foie-gras_1: Foie gra 92.1 1.4 3.1E-05 40.9 10.1 67 167-233 177-245 (247)
94 COG5010 TadD Flp pilus assembl 92.1 0.57 1.2E-05 45.6 7.6 61 173-237 105-165 (257)
95 CHL00033 ycf3 photosystem I as 91.5 1.4 3.1E-05 37.5 8.6 59 169-231 73-138 (168)
96 COG2956 Predicted N-acetylgluc 91.1 1.2 2.6E-05 45.4 8.8 64 167-233 213-276 (389)
97 PF00515 TPR_1: Tetratricopept 90.7 0.75 1.6E-05 29.4 4.8 31 169-199 2-32 (34)
98 KOG2076 RNA polymerase III tra 90.6 0.29 6.2E-06 54.3 4.3 69 168-242 139-207 (895)
99 PF07719 TPR_2: Tetratricopept 90.4 0.77 1.7E-05 28.9 4.6 32 207-238 2-33 (34)
100 PF12569 NARP1: NMDA receptor- 89.9 1.6 3.4E-05 45.8 8.8 63 174-240 10-72 (517)
101 KOG0548 Molecular co-chaperone 89.8 2.4 5.2E-05 45.1 10.0 70 166-239 356-425 (539)
102 PF10579 Rapsyn_N: Rapsyn N-te 89.2 1.8 3.8E-05 35.7 6.9 63 166-229 4-66 (80)
103 PF02064 MAS20: MAS20 protein 89.1 1.1 2.4E-05 39.0 5.9 57 145-201 26-96 (121)
104 PF14561 TPR_20: Tetratricopep 88.6 0.9 1.9E-05 36.9 4.8 52 168-221 22-73 (90)
105 COG4700 Uncharacterized protei 87.9 5.9 0.00013 38.2 10.4 70 170-242 126-196 (251)
106 PF09295 ChAPs: ChAPs (Chs5p-A 87.4 3 6.6E-05 42.4 8.7 77 168-254 234-310 (395)
107 PF14863 Alkyl_sulf_dimr: Alky 87.3 2.1 4.6E-05 37.8 6.7 53 168-224 70-122 (141)
108 KOG0553 TPR repeat-containing 86.9 3.2 6.9E-05 41.4 8.3 63 175-241 122-184 (304)
109 PF09613 HrpB1_HrpK: Bacterial 86.8 9.2 0.0002 34.9 10.6 82 168-254 44-125 (160)
110 PF14853 Fis1_TPR_C: Fis1 C-te 86.6 2.1 4.7E-05 32.1 5.5 42 209-253 4-45 (53)
111 PRK15331 chaperone protein Sic 85.7 2.1 4.5E-05 39.2 5.9 51 172-226 73-125 (165)
112 PF14938 SNAP: Soluble NSF att 85.6 6.2 0.00014 37.0 9.3 87 168-254 155-244 (282)
113 PF13181 TPR_8: Tetratricopept 85.4 2 4.4E-05 27.2 4.2 31 169-199 2-32 (34)
114 COG4105 ComL DNA uptake lipopr 85.3 14 0.00029 36.2 11.6 88 166-257 165-252 (254)
115 PF13432 TPR_16: Tetratricopep 85.2 2.3 5E-05 30.5 4.9 33 168-200 31-63 (65)
116 PF13428 TPR_14: Tetratricopep 84.9 2.5 5.4E-05 29.1 4.8 32 170-201 3-34 (44)
117 PF13176 TPR_7: Tetratricopept 83.7 1.3 2.9E-05 29.5 2.9 23 210-232 3-25 (36)
118 PF07721 TPR_4: Tetratricopept 83.6 1.6 3.4E-05 27.6 3.0 24 207-230 2-25 (26)
119 PF07219 HemY_N: HemY protein 83.1 9.7 0.00021 31.5 8.4 54 163-220 54-107 (108)
120 COG4783 Putative Zn-dependent 82.7 5.2 0.00011 42.2 8.0 61 174-238 346-406 (484)
121 KOG0550 Molecular chaperone (D 82.3 2.4 5.2E-05 44.4 5.4 64 170-233 251-314 (486)
122 smart00028 TPR Tetratricopepti 82.0 2.9 6.2E-05 23.4 3.6 26 172-197 5-30 (34)
123 KOG0553 TPR repeat-containing 81.9 21 0.00045 35.8 11.5 69 164-236 77-145 (304)
124 TIGR02561 HrpB1_HrpK type III 81.8 13 0.00029 33.9 9.3 81 170-255 46-126 (153)
125 KOG4234 TPR repeat-containing 81.7 18 0.00038 35.5 10.6 57 213-273 175-236 (271)
126 KOG0624 dsRNA-activated protei 81.6 4.3 9.3E-05 42.1 6.8 64 170-233 271-334 (504)
127 KOG1840 Kinesin light chain [C 80.7 5.6 0.00012 41.9 7.5 58 174-231 247-308 (508)
128 KOG0543 FKBP-type peptidyl-pro 80.5 8.4 0.00018 39.8 8.5 56 180-239 269-324 (397)
129 PF14561 TPR_20: Tetratricopep 80.3 16 0.00034 29.7 8.5 63 187-254 7-70 (90)
130 smart00028 TPR Tetratricopepti 79.9 4.4 9.5E-05 22.6 3.9 30 208-237 3-32 (34)
131 PF13374 TPR_10: Tetratricopep 79.9 4.8 0.0001 25.9 4.5 26 171-196 5-30 (42)
132 PF13374 TPR_10: Tetratricopep 79.7 3.8 8.2E-05 26.4 3.9 27 207-233 3-29 (42)
133 PRK04841 transcriptional regul 79.6 15 0.00032 39.1 10.3 63 171-233 534-600 (903)
134 PRK04841 transcriptional regul 79.5 6.6 0.00014 41.7 7.7 62 172-233 695-758 (903)
135 PF06248 Zw10: Centromere/kine 79.2 44 0.00096 35.1 13.5 85 112-199 52-139 (593)
136 KOG4403 Cell surface glycoprot 78.7 19 0.0004 38.3 10.3 30 105-134 244-273 (575)
137 PF04184 ST7: ST7 protein; In 78.5 7.5 0.00016 41.5 7.6 37 202-238 255-291 (539)
138 COG3071 HemY Uncharacterized e 78.4 51 0.0011 34.3 13.2 74 170-247 155-233 (400)
139 COG4235 Cytochrome c biogenesi 77.9 15 0.00032 36.4 9.0 33 206-238 227-259 (287)
140 KOG0624 dsRNA-activated protei 77.9 33 0.00072 35.9 11.7 113 100-233 104-216 (504)
141 KOG2002 TPR-containing nuclear 76.8 3.8 8.3E-05 46.4 5.1 52 174-227 686-737 (1018)
142 KOG0548 Molecular co-chaperone 76.1 11 0.00023 40.5 7.9 72 170-241 4-105 (539)
143 PF09295 ChAPs: ChAPs (Chs5p-A 76.0 36 0.00078 34.8 11.4 72 171-247 203-274 (395)
144 PF13371 TPR_9: Tetratricopept 76.0 7.3 0.00016 28.2 4.9 33 167-199 28-60 (73)
145 PF00515 TPR_1: Tetratricopept 75.9 8.8 0.00019 24.4 4.8 32 207-238 2-33 (34)
146 PF13176 TPR_7: Tetratricopept 75.3 5.6 0.00012 26.5 3.9 25 172-196 3-27 (36)
147 KOG1840 Kinesin light chain [C 75.2 79 0.0017 33.6 14.0 61 173-233 414-477 (508)
148 PF09670 Cas_Cas02710: CRISPR- 74.4 27 0.00059 35.0 10.0 65 169-236 132-198 (379)
149 PF09797 NatB_MDM20: N-acetylt 74.3 6.6 0.00014 38.3 5.6 49 181-233 196-244 (365)
150 PF10607 CLTH: CTLH/CRA C-term 74.3 32 0.0007 28.7 9.0 80 172-252 5-85 (145)
151 PF04733 Coatomer_E: Coatomer 74.2 24 0.00053 34.0 9.3 63 171-237 204-267 (290)
152 KOG2002 TPR-containing nuclear 73.6 7.4 0.00016 44.2 6.3 65 174-239 276-340 (1018)
153 KOG2076 RNA polymerase III tra 73.2 14 0.00031 41.5 8.3 56 173-232 454-509 (895)
154 COG4700 Uncharacterized protei 73.1 21 0.00046 34.6 8.4 67 166-237 87-155 (251)
155 KOG0547 Translocase of outer m 73.0 12 0.00025 40.3 7.3 61 167-231 114-174 (606)
156 PF03745 DUF309: Domain of unk 72.7 9 0.0002 29.4 4.9 59 171-229 2-62 (62)
157 PF14559 TPR_19: Tetratricopep 72.3 11 0.00024 26.8 5.1 33 168-200 25-57 (68)
158 PRK11619 lytic murein transgly 71.8 30 0.00066 37.3 10.2 55 175-233 319-373 (644)
159 TIGR02508 type_III_yscG type I 71.2 15 0.00032 32.2 6.3 67 176-252 47-113 (115)
160 KOG0543 FKBP-type peptidyl-pro 69.9 97 0.0021 32.3 12.8 75 166-241 206-291 (397)
161 COG0457 NrfG FOG: TPR repeat [ 69.6 41 0.0009 25.4 7.8 61 169-233 96-157 (291)
162 KOG3785 Uncharacterized conser 69.3 12 0.00027 39.1 6.4 54 177-233 31-84 (557)
163 PRK15490 Vi polysaccharide bio 68.5 26 0.00056 37.8 8.8 66 180-249 20-85 (578)
164 KOG1127 TPR repeat-containing 68.1 32 0.0007 39.8 9.7 72 168-243 2-74 (1238)
165 PF13414 TPR_11: TPR repeat; P 67.7 11 0.00024 27.1 4.2 32 168-199 37-69 (69)
166 PF02259 FAT: FAT domain; Int 67.5 36 0.00078 31.5 8.6 71 164-234 142-212 (352)
167 TIGR00985 3a0801s04tom mitocho 66.8 17 0.00037 32.9 6.0 36 166-201 88-124 (148)
168 COG3096 MukB Uncharacterized p 66.7 1.7E+02 0.0037 33.7 14.5 70 183-252 415-505 (1480)
169 PF13431 TPR_17: Tetratricopep 65.7 6.4 0.00014 26.3 2.5 33 191-227 2-34 (34)
170 PF14346 DUF4398: Domain of un 65.4 14 0.00031 30.0 4.9 34 163-196 40-73 (103)
171 PF13281 DUF4071: Domain of un 64.8 1E+02 0.0022 31.6 11.8 54 180-233 153-210 (374)
172 PF09477 Type_III_YscG: Bacter 63.9 25 0.00055 30.9 6.3 67 175-251 47-113 (116)
173 COG3118 Thioredoxin domain-con 62.4 1E+02 0.0023 31.0 11.1 72 180-254 199-284 (304)
174 PF11207 DUF2989: Protein of u 62.4 15 0.00031 34.9 5.0 56 172-227 143-199 (203)
175 PF10345 Cohesin_load: Cohesin 62.2 69 0.0015 33.8 10.4 90 168-257 361-464 (608)
176 COG4235 Cytochrome c biogenesi 62.0 18 0.00039 35.9 5.7 50 170-219 229-278 (287)
177 PF13646 HEAT_2: HEAT repeats; 61.5 62 0.0013 24.1 7.5 67 175-248 20-86 (88)
178 TIGR00756 PPR pentatricopeptid 60.4 15 0.00033 22.3 3.4 23 211-233 5-27 (35)
179 KOG4626 O-linked N-acetylgluco 59.8 29 0.00062 38.7 7.2 62 168-233 354-415 (966)
180 PRK09687 putative lyase; Provi 59.8 37 0.0008 32.6 7.4 75 174-254 42-120 (280)
181 PRK10780 periplasmic chaperone 59.7 1.3E+02 0.0027 26.7 11.7 29 100-128 47-76 (165)
182 PF06781 UPF0233: Uncharacteri 59.4 19 0.00041 30.0 4.6 25 317-342 24-48 (87)
183 PF07543 PGA2: Protein traffic 58.8 26 0.00057 31.2 5.7 29 98-128 97-125 (140)
184 PF01535 PPR: PPR repeat; Int 58.5 13 0.00028 22.5 2.8 23 211-233 5-27 (31)
185 PRK14720 transcript cleavage f 58.3 29 0.00062 39.4 7.1 64 168-233 65-143 (906)
186 TIGR03362 VI_chp_7 type VI sec 58.1 18 0.0004 35.6 5.1 81 170-252 215-296 (301)
187 PF13646 HEAT_2: HEAT repeats; 57.7 56 0.0012 24.3 6.7 48 206-255 14-61 (88)
188 PF13181 TPR_8: Tetratricopept 57.4 25 0.00055 22.0 4.1 27 207-233 2-28 (34)
189 KOG1129 TPR repeat-containing 57.4 30 0.00066 36.0 6.6 52 173-229 228-279 (478)
190 PRK04778 septation ring format 57.3 32 0.0007 36.2 7.0 37 166-202 517-553 (569)
191 PF12569 NARP1: NMDA receptor- 57.0 39 0.00085 35.7 7.6 59 171-233 197-255 (517)
192 PF13424 TPR_12: Tetratricopep 56.7 23 0.00049 26.1 4.3 32 166-197 44-75 (78)
193 KOG1144 Translation initiation 56.4 49 0.0011 37.6 8.3 53 103-159 210-262 (1064)
194 PF07721 TPR_4: Tetratricopept 55.8 19 0.00041 22.6 3.2 23 170-192 3-25 (26)
195 COG2976 Uncharacterized protei 55.3 34 0.00073 32.7 6.1 63 170-233 91-153 (207)
196 PF04733 Coatomer_E: Coatomer 54.8 35 0.00075 33.0 6.3 61 174-238 171-233 (290)
197 PF05168 HEPN: HEPN domain; I 54.8 1E+02 0.0022 24.0 8.8 33 164-196 4-36 (118)
198 PF12854 PPR_1: PPR repeat 54.5 16 0.00035 24.3 2.9 21 211-231 12-32 (34)
199 PF04781 DUF627: Protein of un 53.9 73 0.0016 27.7 7.4 29 174-202 2-30 (111)
200 KOG4814 Uncharacterized conser 53.2 1.3E+02 0.0029 33.7 10.8 91 146-237 316-424 (872)
201 KOG4555 TPR repeat-containing 52.7 2E+02 0.0043 26.8 11.1 69 175-244 84-152 (175)
202 PF12487 DUF3703: Protein of u 51.9 1.2E+02 0.0026 26.4 8.5 49 166-214 7-55 (112)
203 KOG1126 DNA-binding cell divis 50.6 25 0.00054 38.5 5.0 59 171-233 492-550 (638)
204 KOG2003 TPR repeat-containing 50.6 39 0.00085 36.6 6.3 56 179-238 637-692 (840)
205 PRK09687 putative lyase; Provi 50.6 1.1E+02 0.0023 29.5 8.9 63 185-253 89-156 (280)
206 COG0457 NrfG FOG: TPR repeat [ 50.6 1.1E+02 0.0023 23.2 8.5 51 180-233 179-229 (291)
207 KOG1174 Anaphase-promoting com 50.4 52 0.0011 35.2 7.1 82 168-250 300-428 (564)
208 PF06160 EzrA: Septation ring 49.4 97 0.0021 32.8 9.0 54 150-203 493-551 (560)
209 KOG3060 Uncharacterized conser 48.4 1.1E+02 0.0025 30.6 8.7 76 173-254 57-132 (289)
210 PF06957 COPI_C: Coatomer (COP 48.2 62 0.0013 33.8 7.2 91 164-254 200-348 (422)
211 KOG4056 Translocase of outer m 47.6 55 0.0012 29.8 5.9 35 167-201 80-114 (143)
212 PF01093 Clusterin: Clusterin; 47.3 1.9E+02 0.0042 30.5 10.6 83 99-196 12-94 (436)
213 PF13628 DUF4142: Domain of un 47.3 26 0.00057 29.6 3.8 36 219-254 95-131 (139)
214 PRK02251 putative septation in 47.1 41 0.00089 28.2 4.7 24 318-342 26-49 (87)
215 PF10304 DUF2411: Domain of un 46.7 54 0.0012 22.9 4.6 27 228-254 9-35 (36)
216 PF02985 HEAT: HEAT repeat; I 46.5 41 0.00088 21.8 3.8 24 228-252 4-27 (31)
217 PRK06231 F0F1 ATP synthase sub 46.5 2.5E+02 0.0053 26.1 11.3 57 140-196 120-181 (205)
218 PTZ00266 NIMA-related protein 46.4 1.5E+02 0.0033 34.2 10.5 13 107-119 439-451 (1021)
219 KOG1156 N-terminal acetyltrans 45.5 87 0.0019 34.7 8.1 73 162-238 179-251 (700)
220 PF14853 Fis1_TPR_C: Fis1 C-te 45.1 47 0.001 24.9 4.4 31 171-201 4-34 (53)
221 PF04782 DUF632: Protein of un 44.7 3.4E+02 0.0074 27.2 12.4 35 99-133 91-126 (312)
222 KOG0163 Myosin class VI heavy 44.4 1.4E+02 0.003 34.3 9.4 17 107-123 924-940 (1259)
223 COG4783 Putative Zn-dependent 43.3 86 0.0019 33.5 7.4 54 170-227 376-429 (484)
224 COG5010 TadD Flp pilus assembl 43.0 1.2E+02 0.0025 30.0 7.8 77 153-233 151-229 (257)
225 PLN03077 Protein ECB2; Provisi 42.9 1.2E+02 0.0025 32.9 8.6 50 181-232 602-651 (857)
226 KOG3807 Predicted membrane pro 42.9 2E+02 0.0043 30.4 9.7 85 158-243 225-312 (556)
227 COG2976 Uncharacterized protei 42.7 3.2E+02 0.0069 26.4 10.6 82 164-247 49-130 (207)
228 PF11817 Foie-gras_1: Foie gra 42.7 53 0.0011 30.6 5.3 50 185-234 155-206 (247)
229 KOG4626 O-linked N-acetylgluco 42.6 83 0.0018 35.3 7.4 65 170-238 117-182 (966)
230 smart00509 TFS2N Domain in the 42.3 29 0.00063 27.4 3.1 24 229-253 47-70 (75)
231 PLN03218 maturation of RBCL 1; 41.7 1.1E+02 0.0024 35.2 8.5 53 178-233 659-711 (1060)
232 KOG1125 TPR repeat-containing 41.7 93 0.002 33.9 7.5 79 170-252 287-379 (579)
233 TIGR01167 LPXTG_anchor LPXTG-m 41.7 45 0.00097 21.8 3.5 9 315-323 3-11 (34)
234 COG2015 Alkyl sulfatase and re 41.7 56 0.0012 35.5 5.8 54 168-225 452-505 (655)
235 PF09986 DUF2225: Uncharacteri 41.6 88 0.0019 29.2 6.6 73 176-249 133-211 (214)
236 PF13041 PPR_2: PPR repeat fam 41.3 42 0.00091 23.3 3.5 29 211-239 8-36 (50)
237 PF10516 SHNi-TPR: SHNi-TPR; 41.0 43 0.00092 23.7 3.4 26 171-196 4-29 (38)
238 COG4649 Uncharacterized protei 41.0 2.1E+02 0.0046 27.6 9.0 81 171-254 135-216 (221)
239 PRK00159 putative septation in 40.7 60 0.0013 27.3 4.7 25 317-342 24-48 (87)
240 PF09613 HrpB1_HrpK: Bacterial 40.6 2.9E+02 0.0064 25.3 10.7 67 167-237 9-75 (160)
241 KOG2053 Mitochondrial inherita 40.6 84 0.0018 35.9 7.2 63 174-240 49-111 (932)
242 COG1422 Predicted membrane pro 40.3 55 0.0012 31.2 5.0 16 114-129 73-88 (201)
243 PRK09591 celC cellobiose phosp 40.0 1.3E+02 0.0028 25.5 6.8 64 153-221 5-68 (104)
244 PRK09174 F0F1 ATP synthase sub 40.0 32 0.00069 32.0 3.4 26 315-340 45-72 (204)
245 KOG1174 Anaphase-promoting com 40.0 2.8E+02 0.006 30.0 10.4 76 170-250 440-515 (564)
246 PF06552 TOM20_plant: Plant sp 39.5 2E+02 0.0044 27.1 8.5 69 183-257 50-129 (186)
247 KOG1070 rRNA processing protei 39.3 2.3E+02 0.005 34.5 10.5 65 182-252 1511-1575(1710)
248 KOG2758 Translation initiation 38.7 3.6E+02 0.0078 28.3 10.7 89 107-203 74-164 (432)
249 KOG2264 Exostosin EXT1L [Signa 38.5 92 0.002 34.5 6.9 22 112-133 92-113 (907)
250 PF08312 cwf21: cwf21 domain; 38.3 81 0.0018 23.3 4.6 21 114-134 5-25 (46)
251 cd00280 TRFH Telomeric Repeat 38.2 1.3E+02 0.0028 28.8 7.1 66 186-254 87-156 (200)
252 KOG2376 Signal recognition par 38.2 1.1E+02 0.0024 33.6 7.5 63 172-242 83-145 (652)
253 KOG3364 Membrane protein invol 37.6 1.3E+02 0.0029 27.6 6.8 81 168-254 32-116 (149)
254 PF10300 DUF3808: Protein of u 37.4 89 0.0019 32.2 6.5 66 170-236 269-334 (468)
255 KOG2003 TPR repeat-containing 37.3 65 0.0014 35.0 5.5 89 172-266 494-583 (840)
256 smart00748 HEPN Higher Eukaryt 36.8 59 0.0013 26.3 4.1 31 166-196 2-32 (113)
257 TIGR03017 EpsF chain length de 36.3 4.4E+02 0.0096 26.2 16.4 20 115-134 263-282 (444)
258 TIGR00823 EIIA-LAC phosphotran 36.3 2E+02 0.0044 24.1 7.3 63 154-221 3-65 (99)
259 KOG1173 Anaphase-promoting com 36.1 1.3E+02 0.0029 32.9 7.6 78 168-249 244-321 (611)
260 cd00183 TFIIS_I N-terminal dom 36.0 42 0.00091 26.3 3.1 25 229-254 49-73 (76)
261 PLN02789 farnesyltranstransfer 35.8 2.2E+02 0.0048 28.0 8.7 58 175-238 78-140 (320)
262 KOG4031 Vesicle coat protein c 35.7 4.2E+02 0.0092 25.7 10.2 23 141-163 128-150 (216)
263 KOG1173 Anaphase-promoting com 35.6 69 0.0015 35.0 5.5 93 171-271 458-552 (611)
264 KOG2891 Surface glycoprotein [ 35.0 3.1E+02 0.0066 28.2 9.5 28 103-130 321-348 (445)
265 PRK13800 putative oxidoreducta 34.9 1.5E+02 0.0033 32.9 8.1 72 173-252 793-865 (897)
266 KOG4552 Vitamin-D-receptor int 34.8 1.8E+02 0.004 28.5 7.6 28 140-167 79-106 (272)
267 PF13396 PLDc_N: Phospholipase 34.0 40 0.00087 23.7 2.4 22 321-342 20-41 (46)
268 KOG1130 Predicted G-alpha GTPa 33.9 69 0.0015 34.4 5.0 73 158-230 265-339 (639)
269 KOG4648 Uncharacterized conser 33.2 1.4E+02 0.0029 31.7 6.9 153 99-255 29-215 (536)
270 PF09450 DUF2019: Domain of un 33.1 38 0.00082 29.2 2.5 54 177-249 17-71 (106)
271 TIGR02498 type_III_ssaH type I 33.1 2.3E+02 0.0049 23.6 6.9 60 168-231 6-65 (79)
272 PF12761 End3: Actin cytoskele 32.8 1.6E+02 0.0034 28.1 6.7 27 100-131 95-121 (195)
273 PRK14154 heat shock protein Gr 32.7 2.4E+02 0.0053 26.8 8.0 27 244-277 139-166 (208)
274 PHA02537 M terminase endonucle 32.7 3.3E+02 0.0072 26.2 9.0 86 167-254 128-226 (230)
275 PF13812 PPR_3: Pentatricopept 32.5 79 0.0017 19.4 3.4 23 211-233 6-28 (34)
276 KOG0547 Translocase of outer m 32.5 1.1E+02 0.0024 33.3 6.3 64 171-238 397-460 (606)
277 PLN03098 LPA1 LOW PSII ACCUMUL 32.4 1.2E+02 0.0027 32.1 6.5 38 203-240 72-109 (453)
278 COG4715 Uncharacterized conser 32.3 4.1E+02 0.0089 29.2 10.4 81 148-231 350-430 (587)
279 PF02064 MAS20: MAS20 protein 32.3 1E+02 0.0022 27.0 5.1 39 209-254 66-105 (121)
280 PLN03081 pentatricopeptide (PP 31.8 93 0.002 32.8 5.7 23 210-232 466-488 (697)
281 PRK00409 recombination and DNA 31.7 4.2E+02 0.0092 29.5 10.8 13 260-272 638-650 (782)
282 PRK13460 F0F1 ATP synthase sub 31.6 3.7E+02 0.008 23.9 11.3 53 144-196 92-149 (173)
283 KOG1586 Protein required for f 31.5 1E+02 0.0023 30.7 5.5 66 182-247 128-195 (288)
284 PF04531 Phage_holin_1: Bacter 31.4 54 0.0012 26.6 3.1 20 321-340 9-28 (84)
285 PF13206 VSG_B: Trypanosomal V 31.3 1.2E+02 0.0025 28.9 5.8 33 98-130 317-349 (351)
286 PLN03218 maturation of RBCL 1; 31.3 2E+02 0.0043 33.3 8.4 55 178-233 552-606 (1060)
287 PF12348 CLASP_N: CLASP N term 31.2 2.1E+02 0.0046 25.4 7.1 45 207-252 150-204 (228)
288 COG4499 Predicted membrane pro 31.1 81 0.0018 33.1 4.9 74 169-250 249-355 (434)
289 cd08977 SusD starch binding ou 31.0 1.4E+02 0.0031 28.5 6.4 54 183-237 140-211 (359)
290 PF03713 DUF305: Domain of unk 30.4 64 0.0014 27.6 3.6 31 222-252 12-42 (151)
291 KOG2041 WD40 repeat protein [G 30.4 5.5E+02 0.012 29.7 11.2 53 102-161 796-848 (1189)
292 PF04348 LppC: LppC putative l 30.1 17 0.00037 38.2 0.0 66 165-232 21-87 (536)
293 TIGR03504 FimV_Cterm FimV C-te 29.8 1.1E+02 0.0024 22.2 4.1 27 171-197 2-28 (44)
294 PRK06975 bifunctional uroporph 29.7 78 0.0017 34.2 4.8 22 321-342 322-343 (656)
295 PF12911 OppC_N: N-terminal TM 29.6 61 0.0013 23.3 2.8 22 320-341 13-34 (56)
296 PF04995 CcmD: Heme exporter p 29.5 68 0.0015 23.2 3.0 20 323-342 5-24 (46)
297 PF10602 RPN7: 26S proteasome 29.5 4.2E+02 0.0091 23.8 10.8 62 166-230 34-97 (177)
298 PRK15356 type III secretion sy 28.9 74 0.0016 26.2 3.4 62 182-256 8-70 (75)
299 KOG1155 Anaphase-promoting com 28.5 3.6E+02 0.0078 29.4 9.1 80 170-252 468-550 (559)
300 PRK10144 formate-dependent nit 28.3 63 0.0014 28.7 3.1 35 305-341 86-120 (126)
301 PF03938 OmpH: Outer membrane 28.0 3.8E+02 0.0082 22.8 10.7 48 151-198 82-129 (158)
302 PF11174 DUF2970: Protein of u 27.7 61 0.0013 24.9 2.6 32 305-342 20-51 (56)
303 PF06518 DUF1104: Protein of u 27.6 2.5E+02 0.0055 23.6 6.5 74 79-158 2-80 (93)
304 KOG3081 Vesicle coat complex C 27.5 5.1E+02 0.011 26.3 9.5 52 178-233 183-234 (299)
305 PF00610 DEP: Domain found in 27.3 54 0.0012 24.6 2.3 35 201-236 16-51 (74)
306 KOG2072 Translation initiation 27.3 7.4E+02 0.016 28.8 11.6 29 145-173 666-694 (988)
307 PRK14474 F0F1 ATP synthase sub 27.2 5.6E+02 0.012 24.5 11.3 49 148-196 85-138 (250)
308 TIGR02710 CRISPR-associated pr 27.1 1.7E+02 0.0036 30.3 6.3 60 171-230 133-195 (380)
309 KOG2180 Late Golgi protein sor 26.5 5.1E+02 0.011 29.5 10.1 30 170-199 134-163 (793)
310 PRK11906 transcriptional regul 26.2 5.8E+02 0.013 27.2 10.2 66 168-238 338-404 (458)
311 KOG2053 Mitochondrial inherita 26.2 1.1E+02 0.0025 35.0 5.3 45 185-233 456-500 (932)
312 KOG2300 Uncharacterized conser 26.1 4.4E+02 0.0094 29.0 9.3 85 167-251 444-533 (629)
313 COG3063 PilF Tfp pilus assembl 26.1 2.7E+02 0.0059 27.5 7.2 57 175-233 110-166 (250)
314 PF04826 Arm_2: Armadillo-like 26.0 1.1E+02 0.0025 29.3 4.7 73 172-245 177-253 (254)
315 PF13080 DUF3926: Protein of u 25.6 48 0.001 24.7 1.7 18 236-254 7-24 (44)
316 PF13807 GNVR: G-rich domain o 25.3 73 0.0016 25.0 2.8 25 316-342 53-78 (82)
317 KOG1126 DNA-binding cell divis 25.2 2.3E+02 0.0049 31.4 7.2 64 173-240 528-591 (638)
318 KOG1029 Endocytic adaptor prot 25.1 3.9E+02 0.0085 30.9 9.0 15 65-79 279-293 (1118)
319 PF04184 ST7: ST7 protein; In 25.1 2.4E+02 0.0051 30.7 7.1 56 171-228 262-317 (539)
320 KOG4555 TPR repeat-containing 25.0 2.4E+02 0.0052 26.3 6.3 75 174-253 49-128 (175)
321 PF12606 RELT: Tumour necrosis 25.0 79 0.0017 24.0 2.7 18 324-341 4-21 (50)
322 PF00244 14-3-3: 14-3-3 protei 24.9 1.7E+02 0.0036 27.6 5.5 47 184-233 149-196 (236)
323 TIGR02270 conserved hypothetic 24.8 6.2E+02 0.013 26.1 9.9 70 174-251 74-143 (410)
324 PLN03086 PRLI-interacting fact 24.8 4.5E+02 0.0098 28.7 9.3 14 148-161 23-36 (567)
325 PRK11637 AmiB activator; Provi 24.3 7.5E+02 0.016 25.0 11.1 10 175-184 130-139 (428)
326 PF00790 VHS: VHS domain; Int 24.2 1.5E+02 0.0033 25.4 4.7 62 189-252 8-69 (140)
327 KOG1839 Uncharacterized protei 24.0 94 0.002 36.7 4.3 65 166-231 930-998 (1236)
328 cd03561 VHS VHS domain family; 23.7 2.1E+02 0.0046 24.3 5.5 32 218-251 32-63 (133)
329 KOG0995 Centromere-associated 23.7 2.3E+02 0.0049 31.1 6.8 54 100-154 217-275 (581)
330 PHA00727 hypothetical protein 23.6 4.2E+02 0.0091 26.0 7.9 32 98-133 7-38 (278)
331 PF00746 Gram_pos_anchor: Gram 23.6 27 0.00058 23.9 0.0 27 315-342 10-36 (39)
332 KOG4083 Head-elevated expressi 23.5 6.2E+02 0.013 24.2 8.8 88 142-236 80-179 (192)
333 KOG3785 Uncharacterized conser 23.5 7.6E+02 0.016 26.5 10.2 75 168-246 151-225 (557)
334 KOG3249 Uncharacterized conser 23.4 93 0.002 29.3 3.4 18 326-343 107-124 (181)
335 PF08711 Med26: TFIIS helical 23.4 1.1E+02 0.0023 22.1 3.1 23 230-253 26-49 (53)
336 PF12793 SgrR_N: Sugar transpo 23.4 1.1E+02 0.0024 26.1 3.7 25 169-193 71-95 (115)
337 PF04111 APG6: Autophagy prote 23.3 7.2E+02 0.016 24.6 9.8 15 183-197 121-135 (314)
338 TIGR01069 mutS2 MutS2 family p 22.8 7E+02 0.015 27.9 10.5 12 261-272 627-638 (771)
339 PRK11906 transcriptional regul 22.7 2.1E+02 0.0046 30.4 6.2 63 168-233 372-434 (458)
340 cd02678 MIT_VPS4 MIT: domain c 22.6 1.8E+02 0.004 22.5 4.5 31 166-196 4-34 (75)
341 PRK10454 PTS system N,N'-diace 22.5 5.2E+02 0.011 22.5 8.1 65 152-221 15-79 (115)
342 PLN03081 pentatricopeptide (PP 22.5 3.6E+02 0.0078 28.5 8.0 23 211-233 499-521 (697)
343 PF01602 Adaptin_N: Adaptin N 22.2 48 0.001 32.9 1.5 74 176-253 434-523 (526)
344 PRK00068 hypothetical protein; 21.9 1.5E+02 0.0034 34.1 5.4 34 165-198 930-966 (970)
345 TIGR01598 holin_phiLC3 holin, 21.8 1E+02 0.0023 25.2 3.1 18 320-337 7-24 (78)
346 PRK13183 psbN photosystem II r 21.8 95 0.0021 23.5 2.6 19 323-341 6-24 (46)
347 cd00215 PTS_IIA_lac PTS_IIA, P 21.6 4.7E+02 0.01 21.9 7.0 48 166-217 13-60 (97)
348 PF11846 DUF3366: Domain of un 21.5 5.7E+02 0.012 22.5 8.3 55 186-245 129-183 (193)
349 PF04910 Tcf25: Transcriptiona 21.4 5.1E+02 0.011 26.0 8.4 42 165-206 100-141 (360)
350 PF05957 DUF883: Bacterial pro 21.0 4.4E+02 0.0095 21.1 8.6 83 113-214 5-87 (94)
351 PRK14720 transcript cleavage f 21.0 1.4E+02 0.003 34.2 4.8 59 170-233 33-91 (906)
352 PF05942 PaREP1: Archaeal PaRE 21.0 1.5E+02 0.0034 24.6 4.1 33 164-196 2-34 (115)
353 PF05235 CHAD: CHAD domain; I 20.9 6.1E+02 0.013 22.7 12.1 126 100-254 54-191 (231)
354 COG3947 Response regulator con 20.7 6.1E+02 0.013 26.3 8.7 62 168-233 279-340 (361)
355 TIGR03321 alt_F1F0_F0_B altern 20.6 7.2E+02 0.016 23.4 11.3 16 149-164 86-101 (246)
356 PF05545 FixQ: Cbb3-type cytoc 20.4 1.2E+02 0.0026 21.9 2.8 19 325-343 12-30 (49)
357 PLN03086 PRLI-interacting fact 20.1 5.6E+02 0.012 28.0 8.8 7 248-254 115-121 (567)
No 1
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.48 E-value=1.3e-06 Score=77.83 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK 246 (344)
+++..|+.|..+|++|+|.+||+.|+.+....|. |+...+++++++.||...|+.++|+..++.+...||+..-...|-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 4678999999999999999999999998887664 889999999999999999999999999999888999998777775
Q ss_pred HHHh
Q 019243 247 DLRY 250 (344)
Q Consensus 247 ~LLy 250 (344)
.++.
T Consensus 83 Y~~g 86 (203)
T PF13525_consen 83 YMLG 86 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 2
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.39 E-value=2.2e-06 Score=62.03 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
|..|...+++|+|.+|++.|+.++... |...++.++++.+|...|+.++|+..++.+....|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 578999999999999999999999955 558899999999999999999999999999767776
No 3
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.36 E-value=1.3e-06 Score=63.24 Aligned_cols=61 Identities=28% Similarity=0.398 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHH
Q 019243 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIR 242 (344)
Q Consensus 178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVR 242 (344)
++++|+|.+|+++|+.++...|. ..++.+.|+.+|...|+.++|+.+|+.+...+|+ +.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 58999999999999999997665 5789999999999999999999999999988888 4443
No 4
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.30 E-value=4.3e-06 Score=73.77 Aligned_cols=82 Identities=29% Similarity=0.309 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
++..|+.|+.+|++|+|..||+.||.+-+.+|. ++..-++||+|+-||-.+|+.++|++-++.+.+-||...---.|-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 567899999999999999999999998887775 5677799999999999999999999999999999998876666655
Q ss_pred HHh
Q 019243 248 LRY 250 (344)
Q Consensus 248 LLy 250 (344)
+..
T Consensus 89 ~~g 91 (142)
T PF13512_consen 89 MRG 91 (142)
T ss_pred HHH
Confidence 443
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=3.8e-05 Score=59.05 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..|..|...+.+|+|.+|+..|+.++...|. ++...++.++++.+|...|+.++|+.+|+.+...+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 4566666677777777777777666655442 2334566666777777777777777777766645555
No 6
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=3e-05 Score=71.87 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK 246 (344)
.++..|..|..++++|+|.+|++.|+.+....|. |+...++++||+.||...|+.++|+..++...+.||+..-..+|-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4567899999999999999999999999887774 588899999999999999999999999999999999998777776
Q ss_pred HHHhh
Q 019243 247 DLRYI 251 (344)
Q Consensus 247 ~LLyI 251 (344)
.++..
T Consensus 110 Y~~g~ 114 (243)
T PRK10866 110 YMRGL 114 (243)
T ss_pred HHHHH
Confidence 66653
No 7
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00015 Score=55.76 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+...+..|...++.|+|.+|+.+|+.++...|.+ +.-..+.+.++.+|...|+.++|+..++.+...+|+...-.+|.+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 3457889999999999999999999999877643 333578899999999999999999999999989999998888843
No 8
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.00017 Score=68.31 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
..|-.|...|.+|+|..|+..|+.++..+| .++....+-+.++.+|...|+.++|+.+|+.+.+.||+....+.|++-|
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 456777777777777777777777777665 3455567777777777777777777777777777777777777777665
Q ss_pred h
Q 019243 250 Y 250 (344)
Q Consensus 250 y 250 (344)
.
T Consensus 261 ~ 261 (263)
T PRK10803 261 N 261 (263)
T ss_pred h
Confidence 4
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.00015 Score=52.70 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNH 236 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-q~ekAIALCq~L~~~H 236 (344)
.|..-+..|..++..|+|.+|+..|+.++...|. ...+-+.++.+|...| +.++|+..|++..+-.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999997544 4679999999999999 7999999999876433
No 10
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.00096 Score=55.94 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
..+.+.+...|+....++..|++..+.+.++.+....| +|+....++|.++.+|...|+.++|++.++.+...+|++.+
T Consensus 5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 44556677899999999999999999999999777644 56788999999999999999999999999999977789999
Q ss_pred HHHHHHHH
Q 019243 242 RRQAADLR 249 (344)
Q Consensus 242 RqQAK~LL 249 (344)
+..|+--|
T Consensus 84 ~~~a~l~L 91 (145)
T PF09976_consen 84 KPLARLRL 91 (145)
T ss_pred HHHHHHHH
Confidence 88887533
No 11
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.70 E-value=0.0009 Score=63.42 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=68.0
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 169 ~~~leaG~aA-LerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
...|+.+... +.+|+|.+|+..|+.++..+|. ++.-..+++||+.+|...|+.++|+..++.+.+.||+..-.-.|-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 6789999987 7789999999999999998875 5666799999999999999999999999999988998766555544
No 12
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.63 E-value=0.0005 Score=60.47 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
+...|..|...+..|+|..|+..|+.++...|. ++...++.+.++.+|...|+.++|+..|+.+...+|+......|
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456899999999999999999999998887664 46667899999999999999999999999998788865543333
No 13
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=0.00063 Score=49.78 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
...++.+++|..|++.++.++...|. ...+...++.+|...|+.++|+..+++....+|+.....+++.+|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 35689999999999999999997665 346677799999999999999999999988999999888887765
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.54 E-value=0.00098 Score=58.63 Aligned_cols=67 Identities=21% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+..|...+.+|+|.+|+..++.++...|. ++...++...++.+|...|+.++|+.+++.|..+||+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 457788899999999999999999987765 4777899999999999999999999999999988874
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.00095 Score=45.71 Aligned_cols=65 Identities=26% Similarity=0.408 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.+..|...+.+|+|..|+.+|+.++...+.+ ..+...++.+|...|+.++|+.+|+.....+|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4567777888888888888888887765543 2677888888888888888888888876445543
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.34 E-value=0.0024 Score=54.21 Aligned_cols=81 Identities=15% Similarity=0.022 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH----HHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR 243 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~----qVRq 243 (344)
+..-+..|......|+|.+|+..++.++...| -...+...++.+|...|+.++||..|+......|+. .++.
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34456778888899999999999999888544 346788889999999999999999999987677775 7788
Q ss_pred HHHHHHhhh
Q 019243 244 QAADLRYIL 252 (344)
Q Consensus 244 QAK~LLyIL 252 (344)
+++.++.-|
T Consensus 134 ~~~~~l~~~ 142 (144)
T PRK15359 134 NAQIMVDTL 142 (144)
T ss_pred HHHHHHHHH
Confidence 888877654
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.32 E-value=0.0048 Score=49.49 Aligned_cols=69 Identities=12% Similarity=-0.061 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
...+..|...+..|+|.+|+..|+.++...| ....+...++.+|...|+.++|+..++.....+|+...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP----DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3556778889999999999999999887543 34678899999999999999999999999878887766
No 18
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.16 E-value=0.0024 Score=61.40 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+...|+.|+..|..|+|.+|+..||.+...+|. |+..-|+++-|+-||...|+.++|++......+.||...=-..|-.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 668999999999999999999999998877764 6777999999999999999999999999988878887665555555
Q ss_pred HH
Q 019243 248 LR 249 (344)
Q Consensus 248 LL 249 (344)
|.
T Consensus 113 lk 114 (254)
T COG4105 113 LK 114 (254)
T ss_pred HH
Confidence 43
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.07 E-value=0.0058 Score=59.50 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAA 246 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK 246 (344)
+...+..|...+..|+|.+|+..|+.++...|. ...+.+.++.+|...|+.++|+..|+.....+| ++.+..|-.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456778899999999999999999999987653 367899999999999999999999999876676 488888888
Q ss_pred HHHhhhc
Q 019243 247 DLRYILQ 253 (344)
Q Consensus 247 ~LLyILE 253 (344)
.+..-|.
T Consensus 112 ~~~~kl~ 118 (356)
T PLN03088 112 ECDEKIA 118 (356)
T ss_pred HHHHHHH
Confidence 8877774
No 20
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.05 E-value=0.0072 Score=50.67 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
....|..|..++..|+|..|++.|+.++... +...+...+++.|+.+|...|+.++|+.+.+...
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 4567889999999999999999999999866 4446778899999999999999999999987654
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.0028 Score=47.23 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
++......|...+..|+|.+|+.+|+.+++. .+...+.-+.+-.-|+.+|...|+.++|+..+++-.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556778899999999999999999999974 334344447788889999999999999999988754
No 22
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0014 Score=50.05 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
+|+|..||.+++.+++..|.++ -..+-++|+.+|...|+.++||.+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~ 51 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL 51 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666666666666666555422 2334455566666666666666666553
No 23
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.0057 Score=54.63 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHP 237 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-----------~ekAIALCq~L~~~HP 237 (344)
+..|..|.+.|..|+|..|+..++..+..+|.+ +.-..+.+++++++....+ ..+|+..++.|..++|
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 457888999999999999999999999988864 5568999999999876543 4599999999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 019243 238 SKNIRRQAADLRYILQ 253 (344)
Q Consensus 238 d~qVRqQAK~LLyILE 253 (344)
+..-...|+..+..|.
T Consensus 122 ~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELR 137 (203)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999988777663
No 24
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.97 E-value=0.0042 Score=52.78 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+..|..++.+|+|.+|+..|..++...|. -.++.+.++.++...|+.++|+..|+....-.|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 556799999999999999999999985444 4688899999999999999999999999866663
No 25
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.021 Score=47.37 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRR 243 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-------~HPd~qVRq 243 (344)
....+...+..|+|..|++++..++...|. .-.+...|..+|.+.|+..+|+..|+.+.. ..|.++++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 334566788999999999999999996665 457899999999999999999999987751 247888877
Q ss_pred HHHHHH
Q 019243 244 QAADLR 249 (344)
Q Consensus 244 QAK~LL 249 (344)
-.+.+|
T Consensus 141 l~~~il 146 (146)
T PF03704_consen 141 LYREIL 146 (146)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 776664
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.92 E-value=0.0061 Score=41.66 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+..|+|..|+++|+.++...+... .+...++.+|...|+.++|+..+..+...+|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 466778888889999999999999988665433 7788899999999999999999998874444
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.83 E-value=0.0064 Score=56.74 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 019243 146 KRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (344)
Q Consensus 146 ~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA 225 (344)
-|.|+++.++|... .+...|-.|..++..|+|.+|+..|+.++...|.+ ..+...++.+|...|+.++|
T Consensus 20 ~~~~~~~~~~~~~~-------~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A 88 (389)
T PRK11788 20 GRRSARQDQQKESN-------RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRA 88 (389)
T ss_pred Hhchhhhhhhhhhh-------hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHH
Confidence 45566665655554 34457777888888888888888888888764432 46777788888888888888
Q ss_pred HHHHHHHHhhCCC
Q 019243 226 IALYKQLESNHPS 238 (344)
Q Consensus 226 IALCq~L~~~HPd 238 (344)
+.+++.+. .+|+
T Consensus 89 ~~~~~~~l-~~~~ 100 (389)
T PRK11788 89 IRIHQNLL-SRPD 100 (389)
T ss_pred HHHHHHHh-cCCC
Confidence 88888887 5654
No 28
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.0095 Score=50.75 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
..|+.|-..-..|+..+||.+++.+++. .......-++.|.++.+|...|+.++|+++-++....||+.+.....+-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3566777777777778888887777763 33344455677777778888888888877777777666776665555543
No 29
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.68 E-value=0.013 Score=49.90 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243 150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (344)
Q Consensus 150 v~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALC 229 (344)
++..|.+..+ +..+...+...+..|...+.+|+|..|+.+|..++...+. +..-..+-.-++.+|...|+.++|+..|
T Consensus 18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444432 2334446777899999999999999999999999887543 2233457788999999999999999999
Q ss_pred HHHHhhCCC
Q 019243 230 KQLESNHPS 238 (344)
Q Consensus 230 q~L~~~HPd 238 (344)
++....+|+
T Consensus 96 ~~Al~~~~~ 104 (168)
T CHL00033 96 FQALERNPF 104 (168)
T ss_pred HHHHHhCcC
Confidence 998744554
No 30
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.64 E-value=0.013 Score=47.06 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQ 244 (344)
+...+..|..++..|+|..|+++|+.++...|. ...+...++.+|...|+.++|+..|+.....+|+ +.+.-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345788999999999999999999998886554 3588889999999999999999999888656664 344433
No 31
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.012 Score=56.89 Aligned_cols=67 Identities=15% Similarity=0.341 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.|+.+..+|..|+|..|.+.|-..+..+|. |..-..+++||--+|.+.|+.++|..++-...+.+|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 566666666666666666666666666654 3333566666666666666666666666666555544
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.51 E-value=0.029 Score=46.23 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+..|...+..|+|.+|+++++.++...+. ...+.+.++.+|...|+.++|+..|+...
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555666666666666666666554332 22455555666666666666666666655
No 33
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.50 E-value=0.0048 Score=38.82 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
++.++++.+|...|+.++|+..++.+..+||+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999899873
No 34
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.48 E-value=0.032 Score=51.93 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYKQ 231 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq------------------~ekAIALCq~ 231 (344)
..|..|...|..|+|..|+..++.++...|.+ +.-..+...+++++...|. ..+|+..++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 47889999999999999999999999988865 4448889999988766552 3689999999
Q ss_pred HHhhCCCHHHHHHHHHHHhhh
Q 019243 232 LESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 232 L~~~HPd~qVRqQAK~LLyIL 252 (344)
|..++|+.+-...|+..|..|
T Consensus 150 li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHH
Confidence 999999999999998866655
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.45 E-value=0.016 Score=57.46 Aligned_cols=66 Identities=23% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|..++.+|+|.+|+..|..++...|. ..++++.++.+|...|+.++|+..++.+...+|+
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34677777888888888888888887764333 4577777888888888888888887777745554
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.42 E-value=0.036 Score=54.10 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|..||..|+|..|+++|..++...|.+ ..+.+.++.||...|+.++|+..|+.+....|+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 46778999999999999999999999876653 467889999999999999999999998856664
No 37
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.29 E-value=0.011 Score=43.02 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 209 QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL 44 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence 5779999999999999999999999 899999999999998643
No 38
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.27 E-value=0.043 Score=47.15 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
...+...+..|...+..|+|.+|+.+|+.+++..+.. ..-..+...++.+|...|+.++|+..+++....+|+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3455678999999999999999999999998765432 2235788999999999999999999999888667654
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.26 E-value=0.031 Score=57.21 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+.+.|....+.|..+|..|+|..||..++.++...|. ......++.||...|+.++||..|.......|+
T Consensus 123 ~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 3445667888899999999999999999999987763 246778899999999999999999988855554
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.21 E-value=0.034 Score=53.61 Aligned_cols=70 Identities=20% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+.++..++.|..-|++|+|.+|-..||+|++ +.|-.--++..+|..|+..|+++.|-.-|++-.+-+|+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 34566789999999999999999999999999 44455678999999999999999999999987656665
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.15 E-value=0.0098 Score=45.37 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
-.|..|...|..|+|.+|+++|.. ....+ ....+++.++.||...|+.++||...+.
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 466789999999999999999988 33222 2268888999999999999999998764
No 42
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.13 E-value=0.17 Score=45.63 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aA-LerG~--Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|... +..|+ |.+|+++|+.++...|.+ ..+.+.|+++|...|+.++||+.++.+....|.
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44556667654 57677 699999999999866653 578999999999999999999999998745544
No 43
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=0.047 Score=52.88 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+...|=.|+.-|.+|+|..|...|..+....|.+ +---++-+=|+++....|++++|-+.++++.+++|+..-.+.|+.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3456778999999999999999999998877754 445788899999999999999999999999999999999999987
Q ss_pred HHh
Q 019243 248 LRY 250 (344)
Q Consensus 248 LLy 250 (344)
.+.
T Consensus 257 ~~~ 259 (262)
T COG1729 257 ALK 259 (262)
T ss_pred HHh
Confidence 663
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.91 E-value=0.17 Score=41.74 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+++|+.++...|. ...+...++.+|...|+.++|+.+++......|+
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQ----RPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4455677888888888888888888876543 2456778888888888888888888887633343
No 45
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.78 E-value=0.02 Score=39.61 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
.+.+.|+.+|...|+.++|+.+++.+.+.||+.-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4678999999999999999999999998999753
No 46
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.68 E-value=0.074 Score=57.19 Aligned_cols=77 Identities=10% Similarity=-0.086 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+...+..|....+.|+|.+|+++++.+++..| ---+++++++.+++-.|+.++|.+.|+... ..-.+.+|+-+++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~ 228 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence 66788899999999999999999999998333 335899999999999999999999999998 5666777876766
Q ss_pred HH
Q 019243 248 LR 249 (344)
Q Consensus 248 LL 249 (344)
+-
T Consensus 229 ~~ 230 (694)
T PRK15179 229 LV 230 (694)
T ss_pred HH
Confidence 53
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.67 E-value=0.046 Score=58.73 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+.-+....++|+|.+|+...+.++. ..|....+++.+++|++..|++++|+++|+.+...||+
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 3344555555666666666666555 33445689999999999999999999999999977877
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.65 E-value=0.053 Score=53.11 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+-.|..++..|+|++|.++||.+++..|. ...-++|+.+|++.|++++|..+|++=.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999987665 3455799999999999999999998653
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.59 E-value=0.06 Score=50.30 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
...+..|...+.+|+|.+|+++|+.+....|.+ -..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 345667788888888888888888887754431 1355667778888888888888888887756777644
No 50
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.54 E-value=0.09 Score=47.45 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
++.+..|.-|-..+++|+|..|..+|+.+|..-|-+ ..-=|.|+++|++.|+.++||..|..-.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----FDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345567888888888888888888888877754432 2445667777777777777777776543
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.46 E-value=0.078 Score=59.05 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.+..-.|..|...+.+|+|..|+..|+.+++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n 111 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD 111 (987)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 445567889999999999999999999998877664 6788999999999999999999999999677643
No 52
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.1 Score=53.99 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
...+..|.+.+..|+|.+||+.|+.+++..|.+ .....+...++.||...|+.++|++.++.-. ..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr~dEAla~LrrAL-el 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREEGKKAADCLRTAL-RD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh
Confidence 356778999999999999999999999976642 2122458999999999999999999999988 44
No 53
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.32 E-value=0.14 Score=47.42 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+++|+|.+|+++|+.++...+............++.+|...|+.++|+.+++++...+|
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 34556888889999999999999988876654445556666788999999999999999988753344
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.27 E-value=0.13 Score=48.53 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
+..-+..|...+..|+|..|++.|+.+++..|. ...+...++.+|...|+.++|+..|+.....+|+.-
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 445678899999999999999999999986554 356889999999999999999999999887888754
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.27 E-value=0.16 Score=53.51 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..+..|...+.+|+|.+|+..|+.++...|. ...+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3445567777777777777777777765433 34566666777777777777777776666555553
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.24 E-value=0.25 Score=48.42 Aligned_cols=79 Identities=18% Similarity=0.093 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR 249 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~LL 249 (344)
.+-+|+.|.++|+|..|.++|+.+.+..|.+. ..+++..+..+...|+.++|++..+.+...+| ++.+.+....+.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAY 197 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34557777888888888888887765443321 13456667777888888888888888777777 455555555554
Q ss_pred hhh
Q 019243 250 YIL 252 (344)
Q Consensus 250 yIL 252 (344)
.-.
T Consensus 198 ~~~ 200 (409)
T TIGR00540 198 IRS 200 (409)
T ss_pred HHH
Confidence 433
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.97 E-value=0.13 Score=56.46 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
|......|+|..||++|+++++..|.+ ..+.+.|+++|...|+.++|+..++.+.+..|+ .+.. .-+.|+.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n----~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~ 179 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTN----PDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHH
Confidence 444555566666666666666655554 244456666666666666666666666644333 3332 4445554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.96 E-value=0.43 Score=48.94 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
.+-..+..|.-+|+++.|++|-.+||.++..-+. ..--.|++-||++.|+.++|-.+.+.=
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-----~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-----ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3557888999999999999999999999986665 677899999999999999998877653
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.82 E-value=0.18 Score=56.16 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..|..++.+|+|.+|+..|+.++...|.+ ..+...|+.+|...|+.++|+..++......|+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34899999999999999999999976643 6889999999999999999999999988566754
No 60
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.79 E-value=0.094 Score=33.16 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
+.-+..|...+..|+|.+|++.++.++...|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45677788888888888888888888876654
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.77 E-value=0.19 Score=53.55 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
...+..|.....+|+|.+|++.|+.++...|.+ ..+.+.+++++.+.|+.++|.++.+.+.+.+|+.-.-+.=++.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~----~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRN----INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355666777778888888888888887766543 3467777778888888888888888888788877776666666
Q ss_pred HhhhcCCCCC
Q 019243 249 RYILQAPKLK 258 (344)
Q Consensus 249 LyILEAPkLk 258 (344)
+.+=.-|.|.
T Consensus 470 ~~~~~~~~l~ 479 (765)
T PRK10049 470 RDVHHMAELR 479 (765)
T ss_pred HHhccCceEE
Confidence 6665556553
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.73 E-value=0.24 Score=44.58 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatA-YeA~Gq--~ekAIALCq~L~~~HPd~ 239 (344)
++.-+..|...+..|+|..|+..++.++...|. ..++...+++| |...|+ .++|+.++++..+.+|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 445777899999999999999999999997764 46788889998 478888 599999999999778754
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.65 E-value=0.3 Score=41.69 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+..|-..-.-|+|.+|+.+|+..+...|. ....+.++..+++++...|+.++|+.++-.+.
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4677888888999999999999999987754 34678999999999999999999999987755
No 64
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.63 E-value=0.28 Score=48.16 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
+..++.++.+|+|.+|.+.|+...+..|.+ ..+..+++.+|...|+.++|+.+.+.|. ++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~ 216 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRH----KEVLKLAEEAYIRSGAWQALDDIIDNMA-KA 216 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hc
Confidence 335888999999999999999998866543 3789999999999999999999999999 55
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.58 E-value=0.28 Score=44.79 Aligned_cols=78 Identities=21% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR 249 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~LL 249 (344)
....+-..++.|+|.++.+.|+.+....+.+. .+...++.||...|+.++|+..++++.+.+| ||.+.-.=..+|
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDP----DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH----HHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 44456677889999998888888877664433 3567889999999999999999999997788 677776655555
Q ss_pred hhh
Q 019243 250 YIL 252 (344)
Q Consensus 250 yIL 252 (344)
...
T Consensus 259 ~~~ 261 (280)
T PF13429_consen 259 EQA 261 (280)
T ss_dssp T--
T ss_pred ccc
Confidence 443
No 66
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.56 E-value=0.46 Score=52.96 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
....|..++.+|+|.+|++.|+.++...|.+ ..+.+.|+.+|...|+.++|+++++.+...+|+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 3457888899999999999999999876653 4688999999999999999999999998668854
No 67
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.43 E-value=0.22 Score=51.12 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|+..|+.++...|. ...+.+.|+.+|...|+.++|+..|+.....+|+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 34556677777777777777777777775543 2455667777777888888888887776645665
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.36 E-value=0.2 Score=52.75 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
..+..|..++.+|+|.+|++.|+.++...|. ...+.+.++.+|...|+.++|++.++.+...+|++..
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 3566688888899999999999998886554 3457777888889999999999888887656776543
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=94.25 E-value=0.24 Score=50.73 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..+..|...+.+|+|.+|++.|+.+++..|.+ ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34456778889999999999999999876543 4577889999999999999999999988677764
No 70
>PRK15331 chaperone protein SicA; Provisional
Probab=94.22 E-value=0.15 Score=46.53 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH---------------
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYK--------------- 230 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq--------------- 230 (344)
++.+..|..|-..|.+|+|..|..+|.-.|-.-+-+.. --|.|+.+|+..|+.++||.+|-
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 45667899999999999999999999888875554433 34777777777777777776543
Q ss_pred -------------------HHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 231 -------------------QLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 231 -------------------~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
.-..++-+.+++++|+.+|..|..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence 222245577888888888887754
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.15 Score=54.58 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI-----IPRPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~-----~~~~S~-lGG-----EaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
+-++.|..+-..+++|+|.+|+++|+.+... ....+. .+. -|++.|+-+|+-.|++++|.++|..+.+
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4678899999999999999999999999322 222222 333 3677889999999999999999998883
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.16 E-value=0.26 Score=52.57 Aligned_cols=64 Identities=17% Similarity=-0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+-.|.....+|++.+|++.|+.++...|.+ .++++.++++|...|+.++|+.+|+.....+|+.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN----QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 456778889999999999999999977665 4799999999999999999999999999778885
No 73
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.08 E-value=0.58 Score=46.61 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
|...+..|+|.+|++.++.++...|. ...+...++.+|...|+.++|+.+++++...+|+.
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPN----DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 33344455555555555555543332 23566666777777777777777777766556553
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.95 E-value=0.24 Score=45.91 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..-.|...+.+|+|.+|++.++.+++..|.+ ..+...++.+|...|+.++|+.+++......|
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3456778899999999999999999977664 46778899999999999999999998773443
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.94 E-value=0.72 Score=45.29 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
-.++.++.+|+|.+|++.++.+.+..|.+ ..+..+++.+|.+.|+.++|+.++..|.+..+
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 44889999999999999999988865543 48889999999999999999999999995444
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=93.92 E-value=0.36 Score=49.51 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
+...+..|...+..|+|.+|+++|+.++...|.+. .+.++++.+|...|+.++|++.++.+...+
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----AAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999777632 334455555666889999999998876443
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.65 E-value=0.42 Score=52.50 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
...+-.+....+.|++.+|++.++.+....|. ....+.++-.|.+.++..+||..++++...+|+. .+-...+
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--~e~~~~~ 209 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS--EEVLKNH 209 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 34455567788999999999999998876554 2223556666777888878999999999776642 3333445
Q ss_pred HhhhcC
Q 019243 249 RYILQA 254 (344)
Q Consensus 249 LyILEA 254 (344)
..+|..
T Consensus 210 ~~~l~~ 215 (822)
T PRK14574 210 LEILQR 215 (822)
T ss_pred HHHHHH
Confidence 555544
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.45 E-value=0.62 Score=43.94 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
++.-+..|......|++.+|+..|..+++..|.+ ..+...++.+|...|+.++|+..++......|+..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4458888999999999999999999999976543 58889999999999999999999999885677653
No 79
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.43 E-value=0.33 Score=50.43 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
..|..++.+|+|.+|++.|+.+++..+ + ..+-+.+..+|.-.|+.++|+..|++-..-.|...+.-|.+.+.+
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF 497 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence 357888899999999999999999775 2 478999999999999999999999776657888888888887755
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.38 E-value=0.65 Score=47.24 Aligned_cols=65 Identities=23% Similarity=0.141 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.++|+=-++.++.++.+-+.++|+.+|..+++..+ ....+.|.|...+.+.|++++|+...+...
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~----~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADK----KCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc----cceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 35666677778888888888888888888777433 344667777788888888888887777777
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.36 E-value=0.71 Score=39.68 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH--------------ADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~--------------ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+.+++.++...|.+ ..+...++.+|...|+. ++|+.+++...
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999976543 45667788899888873 55666666555
No 82
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.18 E-value=0.39 Score=38.34 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCc-----hHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCHHHHHHHHH
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFF-----GGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD 247 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~l-----GGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~HPd~qVRqQAK~ 247 (344)
..++..|+|..|++.|..+.+....+... ..-+-+.++..+...|+.++|+..++.-. ..+.|...=.+|-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 56899999999999999988765543332 24567889999999999999998887654 23445555566666
Q ss_pred HHhhh
Q 019243 248 LRYIL 252 (344)
Q Consensus 248 LLyIL 252 (344)
.++.|
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 65555
No 83
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.16 E-value=0.18 Score=31.53 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
..|..|...+..|+|.+|++.|+.+++..|.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46889999999999999999999999988853
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.12 E-value=0.74 Score=41.64 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCHHHHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADL 248 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H----Pd~qVRqQAK~L 248 (344)
-.|...=.+|+|.+||..+..+....+ + ..+.-..++.||-..|+.+.|+..-+.-...| -+.+|+++|+.+
T Consensus 74 gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 74 RLGECCQAQKHWGEAIYAYGRAAQIKI-D---APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-C---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 345555678999999999999888554 2 34677889999999999999877766555455 689999999999
Q ss_pred HhhhcC
Q 019243 249 RYILQA 254 (344)
Q Consensus 249 LyILEA 254 (344)
|..|.-
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 998853
No 85
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.09 E-value=0.63 Score=52.11 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+..|....+.|+|.+|+++|+.+++..|. ..++...|+++|...|+.++|++.|++.....|+.
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPD----DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 33444555566666666666666654442 23566666666666666666666666665445544
No 86
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.93 E-value=2.2 Score=38.05 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL 232 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq---------------~ekAIALCq~L 232 (344)
.+..|..|-+-|++|+|..|+..++..+.++|.+- .-.-|.....+++..... ..+|..--+.|
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988654 446788888888988887 89999999999
Q ss_pred HhhCCCHHHHHHHHH
Q 019243 233 ESNHPSKNIRRQAAD 247 (344)
Q Consensus 233 ~~~HPd~qVRqQAK~ 247 (344)
..++|+.+-...|+.
T Consensus 126 v~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 126 VRRYPNSEYAADARK 140 (142)
T ss_pred HHHCcCChhHHHHHh
Confidence 999999987776654
No 87
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.58 Score=46.51 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 019243 149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (344)
Q Consensus 149 rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIAL 228 (344)
.||+-|.++..- ..+..+..+..+++.|+|..|-.+|..++...+.+ +.+.+.|+.||-..|+.+.|-++
T Consensus 121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence 466667776663 12246778899999999999999999999976654 89999999999999999999999
Q ss_pred HHHHH
Q 019243 229 YKQLE 233 (344)
Q Consensus 229 Cq~L~ 233 (344)
..+|-
T Consensus 191 L~~lP 195 (304)
T COG3118 191 LAALP 195 (304)
T ss_pred HHhCc
Confidence 98876
No 88
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.50 E-value=1.9 Score=35.63 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL 228 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG------------------GEaQmwLatAYeA~Gq~ekAIAL 228 (344)
.++..+..|..+...|+-..+++.++.++......--.+ ..+-..++.+|...|+.++|+.+
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 456677888899999999999999999998776432211 25556678889999999999999
Q ss_pred HHHHHhhCCCHH
Q 019243 229 YKQLESNHPSKN 240 (344)
Q Consensus 229 Cq~L~~~HPd~q 240 (344)
|+.+...+|..+
T Consensus 85 ~~~~l~~dP~~E 96 (146)
T PF03704_consen 85 LQRALALDPYDE 96 (146)
T ss_dssp HHHHHHHSTT-H
T ss_pred HHHHHhcCCCCH
Confidence 999998888754
No 89
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.48 E-value=0.94 Score=41.42 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRR 243 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRq 243 (344)
........++..|+|.++.++|+.+...... +....+-+.++..|...|+.++|+.++++....+|+ ++++.
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~ 184 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN 184 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3445566788899999999999997753322 233455556777889999999999999998878886 66653
No 90
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.44 E-value=1.5 Score=43.04 Aligned_cols=59 Identities=27% Similarity=0.365 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+.++..+.+|+|+.++.+|+..+...|.+. .+...|..+|..+|+...||..|++|.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44556677889999999999999999766543 567888999999999999999999998
No 91
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.28 E-value=2.2 Score=40.22 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC------CCCCCchH----HHHHHHHHHHHHcCChH---HHHHHHH
Q 019243 165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTII------PRPTFFGG----EIQIWLAMAYEANNRHA---DCIALYK 230 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG-~Y~qAIelLE~a~~~~------~~~S~lGG----EaQmwLatAYeA~Gq~e---kAIALCq 230 (344)
...+...|..|..++.++ +|..|+.+|+.+.+.+ ...++.+. .+-..||+||-..|..+ +|+.+-+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456778999999999999 9999999999999874 23455554 44567999999988754 5666777
Q ss_pred HHHhhCCC-HHHHHHH
Q 019243 231 QLESNHPS-KNIRRQA 245 (344)
Q Consensus 231 ~L~~~HPd-~qVRqQA 245 (344)
.+.+.+|+ +.+.-.+
T Consensus 112 ~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLK 127 (278)
T ss_pred HHHHhCCCCcHHHHHH
Confidence 78777888 5555444
No 92
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.16 E-value=2.7 Score=39.42 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH-HHH
Q 019243 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN-IRR 243 (344)
Q Consensus 168 a~~~leaG~aALer-G~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q-VRq 243 (344)
|+...+.|...-.. |+|..||++++.|++.+. ..+....+.-+.++..|...|+.++||.+|+++...+-+.. .+-
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 55666667766677 899999999999998544 34455678888999999999999999999999984443332 233
Q ss_pred HHHH
Q 019243 244 QAAD 247 (344)
Q Consensus 244 QAK~ 247 (344)
.+++
T Consensus 194 ~~~~ 197 (282)
T PF14938_consen 194 SAKE 197 (282)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4444
No 93
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.14 E-value=1.4 Score=40.93 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.....++.|..-|..|+|..|+.+|++++..... =..+-.++-..|..|+...|+.++.+.+|=+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3557889999999999999999999999765442 256677999999999999999999999999997
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.11 E-value=0.57 Score=45.55 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..|+.++..|+|..||..|-.+....|. -+++.+.+..||+..|+.+.|-.-|.+..+-.|
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3899999999999999999999885544 478899999999999999999999988764333
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.52 E-value=1.4 Score=37.48 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYKQ 231 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYe-------A~Gq~ekAIALCq~ 231 (344)
...+..|...+..|+|.+|++.++.++...+.. +.....++.+|. ..|+.+.|+..|.+
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 356788999999999999999999999864432 456667777777 88888866655543
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=91.14 E-value=1.2 Score=45.43 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
-+...+-.|..++.+|+|..||+.||.+.++.+. +-+++---|..||...|+.++.+..-+.-.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPE---YLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456788899999999999999999998886553 557888889999999999999876554443
No 97
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.70 E-value=0.75 Score=29.40 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~ 199 (344)
+.-+..|...+..|+|.+||..|+.+++.-|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4567778888888888888888888887655
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.59 E-value=0.29 Score=54.27 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
.+++|-.+-.+|-||+|.+|.++|..++.+.|.+ .++-..|++.|+-.|++++|... -.|. .|-+|+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~-~llA-AHL~p~d~ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNF-WLLA-AHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHH-HHHH-HhcCCCCh
Confidence 4567888888999999999999999999977764 46778899999999999999753 3444 67776543
No 99
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.43 E-value=0.77 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
++-..++.+|...|+.++|+..|++..+.+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56788999999999999999999998866664
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.85 E-value=1.6 Score=45.76 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
......+.|+|.+|+++|+.....+.. -.-+.-..|..|...|+.++|..+|+.|..++|+.-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 344557889999999999997764443 135667789999999999999999999998888753
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=2.4 Score=45.09 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+.++..-..|..+|..|+|+.||.++..++...|..-.+++ --|.||-..|....|++-|+.-..-+|+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs----NRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS----NRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 34666777799999999999999999999987766555554 35778888899999988887766455553
No 102
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.25 E-value=1.8 Score=35.70 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALC 229 (344)
-++.+.++.|+..|.+-+..+||.....++.....+ +.-=.+-=+|++||+-.|+..++++..
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999866542 222255558999999999999998764
No 103
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=89.13 E-value=1.1 Score=38.98 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 145 EKRMRVRRELEKVAKE--------------QAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 145 ~~~~rv~~~le~~a~e--------------~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
++|.+|+++..+.++. .++..+-+....+.|+..+.+|+|..|+.+|-.|+.-++.+
T Consensus 26 ~frkkL~~rrk~~~~~~~~~~~~~~~~~~d~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 26 DFRKKLRERRKKQAKAQEQAKSEKLPDPNDPEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp -----------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4566666655555543 23333447788999999999999999999999999988763
No 104
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.61 E-value=0.9 Score=36.85 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq 221 (344)
....|..+...+..|+|.+|++.|-.++...+. -..+.++-.|+..+...|.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~--~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRD--YEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT--CCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--ccccHHHHHHHHHHHHcCC
Confidence 345555566666666666666655555543322 2234444445555554444
No 105
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=87.88 E-value=5.9 Score=38.24 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
.++-.+.+-|.-|+...|...||...+..| ..||-| -+.++++|.+.|+..+|-+-.+.+.+..|+++-|
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~---~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar 196 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG---HLLFARTLAAQGKYADAESAFEVAISYYPGPQAR 196 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH
Confidence 344444455555555555555555554433 223222 3556666666666666666666666555666544
No 106
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=87.39 E-value=3 Score=42.40 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+......+...+.+|+|..|++.+..++...|. --+.-..||.+|...|+.++|+...- .+|...-+. +.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLN----s~Pm~~~~~--k~ 303 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALN----SCPMLTYKD--KY 303 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHh----cCcCCCCcc--ch
Confidence 556677888999999999999999999986554 34677779999999999999996554 455443333 33
Q ss_pred HHhhhcC
Q 019243 248 LRYILQA 254 (344)
Q Consensus 248 LLyILEA 254 (344)
.+..+..
T Consensus 304 ~~~~~~p 310 (395)
T PF09295_consen 304 KLKRPVP 310 (395)
T ss_pred hhhcCCC
Confidence 4444433
No 107
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.26 E-value=2.1 Score=37.85 Aligned_cols=53 Identities=26% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ek 224 (344)
+...++.++++|..|+|+-|.+++.-++..-|. .-+++-.++.||.+.|...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~----n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD----NEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHhcc
Confidence 457899999999999999999999999885553 24799999999988887654
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.92 E-value=3.2 Score=41.44 Aligned_cols=63 Identities=27% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
+.+..+=|+|..||+-+|.++.+-|..|+.++ =|-+||-+.|+.++||.-|+.-.--.|+-++
T Consensus 122 AAAy~~Lg~~~~AVkDce~Al~iDp~yskay~----RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 122 AAAYSKLGEYEDAVKDCESALSIDPHYSKAYG----RLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcChHHHHHHH----HHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 44556778888888888888886666555554 4678999999999999998875536677664
No 109
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.77 E-value=9.2 Score=34.90 Aligned_cols=82 Identities=15% Similarity=-0.057 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
++..+=.|...+.+|+|..|+.+|+.+.+.. +...-++-.|+.|+...|+..==.--.+-|. ..+|++.+.=.+.
T Consensus 44 ~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~----~~~p~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv~~ 118 (160)
T PF09613_consen 44 PELDLFDGWLHIVRGDWDDALRLLRELEERA----PGFPYAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALVRA 118 (160)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 4556667999999999999999999976633 3445567788888888887654333334455 7889988888888
Q ss_pred HHhhhcC
Q 019243 248 LRYILQA 254 (344)
Q Consensus 248 LLyILEA 254 (344)
|+.+=+-
T Consensus 119 Ll~~~~~ 125 (160)
T PF09613_consen 119 LLARADL 125 (160)
T ss_pred HHHhccc
Confidence 8776543
No 110
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.63 E-value=2.1 Score=32.05 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhc
Q 019243 209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (344)
Q Consensus 209 QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILE 253 (344)
-.+||.||...|+.++|...|..|....|+- +||+.|...++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence 4678999999999999999999998777775 47777776664
No 111
>PRK15331 chaperone protein SicA; Provisional
Probab=85.67 E-value=2.1 Score=39.22 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 019243 172 FELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (344)
Q Consensus 172 leaG~aAL--erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI 226 (344)
|=.|++|. .+|+|..||..+--+..... ++|. .-+.++.||.+.|+.+.|+
T Consensus 73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~---p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 73 YTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYR---PVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCC---ccchHHHHHHHhCCHHHHH
Confidence 33466665 46899999999887665322 2221 1345677777888877664
No 112
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=85.58 E-value=6.2 Score=37.00 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGG-EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGG-EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
.+...+.|....+.|+|.+||++++.+...+-.+ ++.+. +.-+-.+.+|-..|+...|-..+......+|...-.+.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 4556788999999999999999999988754322 33333 23356788999999999999999988766776666666
Q ss_pred HHHHHhhhcC
Q 019243 245 AADLRYILQA 254 (344)
Q Consensus 245 AK~LLyILEA 254 (344)
.+=+-.+|+|
T Consensus 235 ~~~~~~l~~A 244 (282)
T PF14938_consen 235 YKFLEDLLEA 244 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666666
No 113
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.44 E-value=2 Score=27.19 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~ 199 (344)
+.-+..|....+.|+|..|+..|+.+++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567778888888888888888888887554
No 114
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.33 E-value=14 Score=36.18 Aligned_cols=88 Identities=25% Similarity=0.132 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
..|...+..|.--++||.|-.||--++.+++. -+.|+.--++-.+|.-||.+.|-+++|-...+-|....|+.+ |.
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~ 240 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY 240 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence 45778889999999999999999999999988 556777789999999999999999999999999996677776 65
Q ss_pred HHHHhhhcCCCC
Q 019243 246 ADLRYILQAPKL 257 (344)
Q Consensus 246 K~LLyILEAPkL 257 (344)
+.=-.++..+.|
T Consensus 241 ~~~~~~~~~~~~ 252 (254)
T COG4105 241 KDAYRLLQRGGL 252 (254)
T ss_pred hhhhhccccccc
Confidence 554444444433
No 115
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.20 E-value=2.3 Score=30.47 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
....+..|...+.+|+|.+|+++|+.+++..|.
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 556888999999999999999999999987764
No 116
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.91 E-value=2.5 Score=29.09 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
..+..|......|+|.+|++.|+.+++..|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35677899999999999999999999988764
No 117
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.66 E-value=1.3 Score=29.49 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 019243 210 IWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 210 mwLatAYeA~Gq~ekAIALCq~L 232 (344)
..|+.+|...|+.++||.+|++.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35889999999999999999984
No 118
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.60 E-value=1.6 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 019243 207 EIQIWLAMAYEANNRHADCIALYK 230 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq 230 (344)
.+.+.|+.+|...|+.++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367788888888888888888775
No 119
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=83.10 E-value=9.7 Score=31.47 Aligned_cols=54 Identities=26% Similarity=0.174 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 019243 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (344)
Q Consensus 163 ~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G 220 (344)
.+...++..+..|..|+..|+|..|-..+..+....+ .-.-..+.-|.|=+.+|
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~----~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD----NPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcC
Confidence 3445567899999999999999999999999876532 22334444455555554
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=82.68 E-value=5.2 Score=42.20 Aligned_cols=61 Identities=25% Similarity=0.266 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.|...++.+++.+|++.|..++...|.. .=++|-++.||...|+.++||.+-+.++...|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 4666778888888888888877766654 346777888888888888888877777744443
No 121
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=2.4 Score=44.37 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..-+.|-.||.+|.|+.|-+....++..-|.+...-...=+-.++++-..|+..+||+-|..-.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3445689999999999999999999999998888888888888999999999999999998765
No 122
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.97 E-value=2.9 Score=23.39 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTI 197 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~ 197 (344)
+..|...+..|+|..|+..+..++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44556666666666666666665543
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.91 E-value=21 Score=35.83 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
-.+.|+..=..|=.+++.++|..||.....|+...|.+--++- --|-||...|+.+.||.=|+.-+.-.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyyc----NRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYC----NRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHH----HHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 3445666667899999999999999999999998886544433 24779999999999999999988333
No 124
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.81 E-value=13 Score=33.85 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
..+=.|-..+.+|+|.+|+..|..+.+..+ ++ +-..-.++.|+.+.|+-.==.--..-|. ..++++...-.+.|+
T Consensus 46 ~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~-~~---p~~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 46 LDMFDGWLLIARGNYDEAARILRELLSSAG-AP---PYGKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRALL 120 (153)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHhhhccCC-Cc---hHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHHHh
Confidence 344568889999999999999999766332 22 4556678888888888665444455566 788888888888777
Q ss_pred hhhcCC
Q 019243 250 YILQAP 255 (344)
Q Consensus 250 yILEAP 255 (344)
.+++.|
T Consensus 121 g~~~~~ 126 (153)
T TIGR02561 121 GAQQPP 126 (153)
T ss_pred ccccCC
Confidence 555544
No 125
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.70 E-value=18 Score=35.46 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=40.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcCCCC-----CCCcccccccCCCCCC
Q 019243 213 AMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKL-----KISQEEMVTIPLIGSS 273 (344)
Q Consensus 213 atAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEAPkL-----krp~ew~veIPdL~~~ 273 (344)
|-||...-..++|+.=|++++ ..||..+ +|++-..-|. |++ +-..+-|..+-+|++.
T Consensus 175 Aeayek~ek~eealeDyKki~--E~dPs~~-ear~~i~rl~-~~i~ernEkmKee~m~kLKdlGN~ 236 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKIL--ESDPSRR-EAREAIARLP-PKINERNEKMKEEMMEKLKDLGNF 236 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHH--HhCcchH-HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999999999998 4577766 7777655553 222 3334556667777643
No 126
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.60 E-value=4.3 Score=42.13 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..++.++++.+.+.|-.|++--|.++..-|..++.--++.-.+.+||..-|+.-+||.-|....
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 3778888888888888888888888876666555555556667777777778888887777766
No 127
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=80.66 E-value=5.6 Score=41.93 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
.|..-+..++|.+||-++++|++.. ...++.-+-+-.-|+.+|...|+..+|..+|+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 5777788999999999999999744 477888999999999999999999999888875
No 128
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=8.4 Score=39.80 Aligned_cols=56 Identities=18% Similarity=0.039 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+-+.|..||++++.+++.-|.| ..+-+--.+||.+.|+.+.|+...++..+-.|+.
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNN----VKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 3456666666666666644332 3555666666666666666666666655444443
No 129
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.26 E-value=16 Score=29.67 Aligned_cols=63 Identities=22% Similarity=0.156 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH-HHHHhhhcC
Q 019243 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA-ADLRYILQA 254 (344)
Q Consensus 187 AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA-K~LLyILEA 254 (344)
.|+-|+..++..|. -.++++.|+.+|...|+.++|+..+-.+.+++++.. ...| +.||.||+.
T Consensus 7 ~~~al~~~~a~~P~----D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 7 DIAALEAALAANPD----DLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHH
Confidence 46778888885554 459999999999999999999999999997776552 2222 335555543
No 130
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.94 E-value=4.4 Score=22.59 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 208 IQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 208 aQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
+-..++.+|...|+.++|+..++...+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456789999999999999999988874444
No 131
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.89 E-value=4.8 Score=25.91 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
....|...+.+|+|.+|+.+++.++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34445555555555555555555543
No 132
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.72 E-value=3.8 Score=26.40 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...|+.+|...|+.++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356789999999999999999998876
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=79.59 E-value=15 Score=39.09 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~----S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+..|...+.+|+|.+|.++++.+++..... ++....+...++.+|...|+.++|.++|+...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 3455778899999999999999988754432 23334455677888888999999999988764
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=79.52 E-value=6.6 Score=41.67 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S--~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
...|.....+|+|.+|+.+|+.+++...... ..-.++.++++.+|...|+.++|+...++-.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578888999999999999999987543222 2234688899999999999999988755443
No 135
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=79.18 E-value=44 Score=35.09 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=57.6
Q ss_pred HHHHHHHHHHH-HHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 019243 112 IEEMRELEKKA-EELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAK--EQAERRATAQLMFELGQKAYGKGMYGRAI 188 (344)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~--e~a~~~e~a~~~leaG~aALerG~Y~qAI 188 (344)
+++-+.|.+.. +-++++++.+ ...+.....++-..++++|+.... +.-+.+..+...|+....|+..|+|-.|+
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~---i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa 128 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENE---IQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAA 128 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34445555555 2244434332 234455556667788888887654 33455677888999999999999999999
Q ss_pred HHHHHHHhhCC
Q 019243 189 EFLEGALTIIP 199 (344)
Q Consensus 189 elLE~a~~~~~ 199 (344)
..|+.+-..+.
T Consensus 129 ~~L~~~~~~L~ 139 (593)
T PF06248_consen 129 DLLEELKSLLD 139 (593)
T ss_pred HHHHHHHHHHH
Confidence 99999877544
No 136
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.74 E-value=19 Score=38.28 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 019243 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDS 134 (344)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (344)
|++-+|.+|.++-.|...++||++++...+
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Lekar~ 273 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLEKARE 273 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888889999999999987765
No 137
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=78.48 E-value=7.5 Score=41.47 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 202 TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 202 S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+....-++--||||....|+.++||..++.|.+-+|.
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 3444455566888888888888888888888744654
No 138
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=78.37 E-value=51 Score=34.31 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CH---HHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP--SK---NIRRQ 244 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP--d~---qVRqQ 244 (344)
-.+..++..+.+|+|..|..-++.+....|. .-++.-..+.+|...|.-+...++-.+|.|.+- ++ ..++|
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr----~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPR----HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcC----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 4677788999999999999999999885554 458899999999999999999999999985542 33 34556
Q ss_pred HHH
Q 019243 245 AAD 247 (344)
Q Consensus 245 AK~ 247 (344)
|-.
T Consensus 231 a~~ 233 (400)
T COG3071 231 AWE 233 (400)
T ss_pred HHH
Confidence 654
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=15 Score=36.44 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 206 GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+++.|+++|.-+|+..+|++.-+.|.+..|.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 478889999999999999999999988854443
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=77.89 E-value=33 Score=35.93 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (344)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aAL 179 (344)
|+-...-+|--=.=.|-|||.-+.....-+..+.++ ++. .-|+++-.-..+.....+..+.|+
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-----~~~------------~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-----GLV------------LEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-----chh------------HHHHHHHHhHHHHHHHHHHHHHHh
Confidence 444444444444455677777666666666666652 222 222222222333445667788999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..|+|..||+++..+++..| -....+..-+.||.+.|+..+||.=-+...
T Consensus 167 ~~GD~~~ai~~i~~llEi~~----Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQP----WDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred cCCchhhHHHHHHHHHhcCc----chhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998544 456778888999999999999997655543
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.78 E-value=3.8 Score=46.35 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
.|--.+++|+|+.||+.+|.++...-.++. .++...|+.||...|+.++|..
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~--~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNR--SEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHhhhHHHHHH
Confidence 355688999999999999999986665444 4899999999999999999875
No 142
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=11 Score=40.46 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHHHHc
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEAN 219 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG------------------------------EaQmwLatAYeA~ 219 (344)
..-+.|-+||..|+|..||.++..++.+.|.|.-++. ..=-=+.-|+.+.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 3456799999999999999999999999998766544 1222356788999
Q ss_pred CChHHHHHHHHHHHhhCCCHHH
Q 019243 220 NRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 220 Gq~ekAIALCq~L~~~HPd~qV 241 (344)
|+.++|+.-|..=...-|+-.+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHH
Confidence 9999999998764436666543
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=76.04 E-value=36 Score=34.85 Aligned_cols=72 Identities=14% Similarity=0.007 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
.+-.+...+..++..+||+++..++...|.+ .++-...|..|...|+.+.|+.++++.+ ...-.+.+-|+.=
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~L 274 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAV-ELSPSEFETWYQL 274 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHHH
Confidence 4445777788899999999999999866654 6666778888999999999999999999 6766777788763
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=76.00 E-value=7.3 Score=28.20 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~ 199 (344)
.....+..|...+..|+|..|++.|+.+++..|
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 355678899999999999999999999998666
No 145
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.86 E-value=8.8 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
++=..++.+|...|+.++|+..|++-..-.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34567899999999999999999987745554
No 146
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=75.31 E-value=5.6 Score=26.45 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
...|......|+|.+||++++.++.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578889999999999999999664
No 147
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.17 E-value=79 Score=33.60 Aligned_cols=61 Identities=18% Similarity=0.050 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..|..-.+.+.|+.|-++|+.+... +.+.++----.=..|+-+|.+.|+.++|+.+-..+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3456667788888888888877653 334444444556678999999999999999988887
No 148
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.36 E-value=27 Score=35.03 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHhhC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA--NNRHADCIALYKQLESNH 236 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA--~Gq~ekAIALCq~L~~~H 236 (344)
...+..+..+|.+++|+.|.++|+.++..++.+-. -+.---|+.||.+ ..++.+|...-+.+. .+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~-~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL-KR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HH
Confidence 45677788999999999999999998876443222 3455566777776 677889998888877 44
No 149
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=74.31 E-value=6.6 Score=38.27 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
....-+||-+||.++. +||..-++++|||..|.-.|-...|..+|..|-
T Consensus 196 ~~~l~~Ai~lLE~~l~----~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 196 SEYLLQAIALLEHALK----KSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 4556688899999988 666777999999999999999999999999886
No 150
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=74.27 E-value=32 Score=28.75 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~-~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
...-..++.+|+...|+++++..-. ....++.+--.++..-..=.-..|+..+||..+|+-. .+......+.-++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL-SPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 3455778999999999999998664 3344566666666666666666899999999999855 3333345566666666
Q ss_pred hh
Q 019243 251 IL 252 (344)
Q Consensus 251 IL 252 (344)
.|
T Consensus 84 lL 85 (145)
T PF10607_consen 84 LL 85 (145)
T ss_pred HH
Confidence 55
No 151
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=74.22 E-value=24 Score=34.03 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-ADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~-ekAIALCq~L~~~HP 237 (344)
..-.+...+.+|+|.+|.+.|+.++..- +.-..+-.-+++++.-.|+. +.+-.+-.+|...||
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKD----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3334445555555555555555554321 22344555555555555555 333334444444455
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=73.55 E-value=7.4 Score=44.16 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.+---|-+|+|..|..+-+.++... .+...-.+.-+||+.+|.+.|+.++|..-|.+=++..|+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 3455678899999999999988744 3445556778999999999999999999988877455555
No 153
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=73.15 E-value=14 Score=41.55 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
..|.=-++.|.|.+|++.++.++...|.+ .-+++-|++-|+..|++++|...-.++
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~----~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDN----LDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCc----hhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 33444444444444444444444433321 244555555555555555554444443
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=73.09 E-value=21 Score=34.61 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG--EIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG--EaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+.+..|..|.++.+-|+|.+|+.+++++++- .+.+ .+-+.++.|.-+.|+...|..+-..|-..||
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 55788999999999999999999999998862 2223 4556778899999999999999999974444
No 155
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.97 E-value=12 Score=40.33 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
-|...=..|-..|..|.|.+||.+...|++.+|...-++.. .+-||...|+.++-|.-|-.
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsN----raAcY~~lgd~~~Vied~Tk 174 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSN----RAACYESLGDWEKVIEDCTK 174 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhh----HHHHHHHHhhHHHHHHHHHH
Confidence 34455567999999999999999999999999874333332 35566666666666665544
No 156
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=72.71 E-value=9 Score=29.43 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALY 229 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALC 229 (344)
.|..|...|..|+|=+|=+.||.+....+.. ..+-|=||+.-+......|+..-|..||
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4788999999999999999999999755543 3344556666666677888888887765
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=72.27 E-value=11 Score=26.81 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
....+..|...++.|+|.+|.+.|+.+....|.
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 446788999999999999999999999987665
No 158
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.75 E-value=30 Score=37.33 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
-..|+..|+......++.. ++.....-++.+.|++.|+++.|+.++|..+++.+.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~----L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLAR----LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHccCHHHHHHHHHh----cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3457788888766555555 444444567999999999999999999999999997
No 159
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.21 E-value=15 Score=32.21 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=55.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
-..+-||+|+.|..++++.| . --+-=|+|.|--..|-..++-.=--.|. ...+|+.++.|.-+...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~--~-------pdlepw~ALce~rlGl~s~l~~rl~rla-~sg~p~lq~Faag~req~ 113 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC--Y-------PDLEPWLALCEWRLGLGSALESRLNRLA-ASGDPRLQTFVAGMREQI 113 (115)
T ss_pred HHHHccchHHHHHHhcCCCC--C-------chHHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 35678999999999999975 2 2466799999999999998877777788 899999999998887654
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.93 E-value=97 Score=32.30 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc---h--------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---G--------GEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l---G--------GEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
+.|...=+.|-..|++|+|..|+..++.++..++..... - .-+-+-||++|-..++..+||..|-.-.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL- 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL- 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 334344445556666666666666666655544321111 0 1233456777777777777777776655
Q ss_pred hCCCHHH
Q 019243 235 NHPSKNI 241 (344)
Q Consensus 235 ~HPd~qV 241 (344)
.|-...+
T Consensus 285 e~~~~N~ 291 (397)
T KOG0543|consen 285 ELDPNNV 291 (397)
T ss_pred hcCCCch
Confidence 4544444
No 161
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=69.61 E-value=41 Score=25.42 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM-AYEANNRHADCIALYKQLE 233 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLat-AYeA~Gq~ekAIALCq~L~ 233 (344)
...+..|......|+|..++..+..+....+.. ......... +|...|+.++|+..+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666667777777777777766543332 233344444 6777777777777777754
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.35 E-value=12 Score=39.10 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 177 aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+.+.+|--||.+||-... .....-..+|+|++-||-..|+.++|.+.|..|.
T Consensus 31 dfls~rDytGAislLefk~~---~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~ 84 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLN---LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLM 84 (557)
T ss_pred HHHhcccchhHHHHHHHhhc---cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 45667788888888877552 1223335778888888888888888888887776
No 163
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=68.51 E-value=26 Score=37.85 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
++....+++.+.|..+. .+......-+.-|.-|.-.|++++|-+|++.|..+|||.---.||++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T PRK15490 20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRLY 85 (578)
T ss_pred HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 33444555665555432 3344445556677888999999999999999999999977778888864
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=68.09 E-value=32 Score=39.80 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-~ekAIALCq~L~~~HPd~qVRq 243 (344)
+++.++.++.|+...+|..+|++.++++..-|.|+ .+++.|-.||-.+|+ .++|-.-|..-.+--||.-+-=
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNY----nA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAW 74 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNY----NAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAW 74 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHH
Confidence 45789999999999999999999999999888766 468888899999999 9999888877665666655443
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=67.73 E-value=11 Score=27.07 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP 199 (344)
Q Consensus 168 a~~~leaG~aALerG-~Y~qAIelLE~a~~~~~ 199 (344)
+...+..|...+.+| +|.+|++.++.+++..|
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 556888999999999 79999999999998654
No 166
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.52 E-value=36 Score=31.48 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
..+.+...++.+..|-+.|.|..|...|..+....+..+.....+.+--|.-.-+.|+..+||.+-+.+.+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567788999999999999999999999988766665665778999999999999999999999888883
No 167
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=66.75 E-value=17 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCC
Q 019243 166 ATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 166 e~a~~~leaG~aALerG-~Y~qAIelLE~a~~~~~~~ 201 (344)
.-+....+.|+..+.+| ++.+|+.+|-.|+.-+|.+
T Consensus 88 ~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 88 AFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 34777888899999999 8999999999888877754
No 168
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.72 E-value=1.7e+02 Score=33.69 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHH---------------------HHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWL---------------------AMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~~~~~S~lGGEaQmwL---------------------atAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
+|++||+.||.+-+.|.....-.-.++-|+ -++-.+..|+++|..|...+.-.-|-...
T Consensus 415 QYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A 494 (1480)
T COG3096 415 QYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEA 494 (1480)
T ss_pred HHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhH
Confidence 699999999999888876544333343333 34556777888888876666656777777
Q ss_pred HHHHHHHHhhh
Q 019243 242 RRQAADLRYIL 252 (344)
Q Consensus 242 RqQAK~LLyIL 252 (344)
-++|+.||--.
T Consensus 495 ~~~A~~llR~~ 505 (1480)
T COG3096 495 WDVARELLREG 505 (1480)
T ss_pred HHHHHHHHHhC
Confidence 78888877543
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.71 E-value=6.4 Score=26.34 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 191 LEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 191 LE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
++.+++..|. ...+-..|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~----n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN----NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC----CHHHHHHHHHHHHHCcCHHhhcC
Confidence 3455554443 45889999999999999999974
No 170
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=65.42 E-value=14 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 163 ~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
.++..|+..|..++.+|..|+|..|..+.+.+..
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999988765
No 171
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=64.77 E-value=1e+02 Score=31.64 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=43.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH---cCChHHHHHHHHH-HH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA---NNRHADCIALYKQ-LE 233 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA---~Gq~ekAIALCq~-L~ 233 (344)
.-.+|+.=|++.|..-......-.....+|...|.|+-. .|+.++|+.+|.. |.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 457899999999986554333355577899999999999 9999999999998 54
No 172
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.92 E-value=25 Score=30.92 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
....+-||+|++| ++++.|...|. +-=|+|.|--..|-..++-.--..|. ...+|+.+..|..+..-
T Consensus 47 ~~sLmNrG~Yq~A--Ll~~~~~~~pd-------L~p~~AL~a~klGL~~~~e~~l~rla-~~g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 47 LSSLMNRGDYQEA--LLLPQCHCYPD-------LEPWAALCAWKLGLASALESRLTRLA-SSGSPELQAFAAGFREQ 113 (116)
T ss_dssp HHHHHHTT-HHHH--HHHHTTS--GG-------GHHHHHHHHHHCT-HHHHHHHHHHHC-T-SSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH--HHhcccCCCcc-------HHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 4567899999999 88887765443 45689999999999999999888898 89999999999877654
No 173
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=1e+02 Score=31.04 Aligned_cols=72 Identities=18% Similarity=0.072 Sum_probs=48.2
Q ss_pred hcCCHHH---HHHHHHHHHhhCC--------CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CHHHHHHH
Q 019243 180 GKGMYGR---AIEFLEGALTIIP--------RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQA 245 (344)
Q Consensus 180 erG~Y~q---AIelLE~a~~~~~--------~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP---d~qVRqQA 245 (344)
....|.. .|++++.+....+ ...|---++++-||..|-..||.+.|...-=.|.++.. |.++|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R--- 275 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR--- 275 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH---
Confidence 3344444 4667766554331 12344569999999999999999999988777764533 45555
Q ss_pred HHHHhhhcC
Q 019243 246 ADLRYILQA 254 (344)
Q Consensus 246 K~LLyILEA 254 (344)
|+|+.+|++
T Consensus 276 k~lle~f~~ 284 (304)
T COG3118 276 KTLLELFEA 284 (304)
T ss_pred HHHHHHHHh
Confidence 457777766
No 174
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.41 E-value=15 Score=34.90 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 172 FELGQKAY-GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 172 leaG~aAL-erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
++.+++.| -+-+=..++++|-.+++..+....+-.++-+.||+.|+..|+.+.|--
T Consensus 143 lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 143 LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 34444443 477889999999999999999888999999999999999999998853
No 175
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.19 E-value=69 Score=33.75 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHH--------HHHh
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYK--------QLES 234 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~-----~S~lGGEaQmwLatAYeA~Gq~ekAIALCq--------~L~~ 234 (344)
....+-.+..++-+|++..+...++.+...+.. ....+..+-+..++-|++.|+.+.|...|+ ....
T Consensus 361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~ 440 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANR 440 (608)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhcc
Confidence 445677889999999999999999988775542 245678999999999999999999999998 4444
Q ss_pred hCCCHHHHHHHHH-HHhhhcCCCC
Q 019243 235 NHPSKNIRRQAAD-LRYILQAPKL 257 (344)
Q Consensus 235 ~HPd~qVRqQAK~-LLyILEAPkL 257 (344)
..++.++.--|.= +.-|+..|.=
T Consensus 441 ~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 441 KSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred CCcchHHHHHHHHHHHHHhHhhcc
Confidence 7788888888774 6667776643
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.99 E-value=18 Score=35.89 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN 219 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~ 219 (344)
..+=.|..+|++|+|.+|+..++..++..|++.+--.-++-..+.+....
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~~~ 278 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALAQR 278 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhcc
Confidence 34556889999999999999999999999999888887777776665443
No 177
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=61.53 E-value=62 Score=24.06 Aligned_cols=67 Identities=19% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
+..+|.+=.-.+++..|..++..- ...+|..-+.|+...|. ++++.....+....++..||..|-+-
T Consensus 20 a~~~L~~~~~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 20 AARALGELGDPEAIPALIELLKDE------DPMVRRAAARALGRIGD-PEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHTSS------SHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred HHHHHHHcCCHhHHHHHHHHHcCC------CHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 344444444445555555555211 12455555555555553 33333333333133444455555443
No 178
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.41 E-value=15 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 019243 211 WLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.|+.+|...|+.++|+.+++.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 47889999999999999999987
No 179
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.78 E-value=29 Score=38.74 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|..++..|-.-.++|....|+.+++.+++-.|. -..+---|+..|+.+|+.++||..|+.-.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~----~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE----FAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh----hhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 556778888888999999999999998885543 35666678888999999999999888776
No 180
>PRK09687 putative lyase; Provisional
Probab=59.76 E-value=37 Score=32.64 Aligned_cols=75 Identities=7% Similarity=-0.152 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----ADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~----ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
.+..+|..-.-.+++..+..++..-+ ..+|...|.++-..|.. ++++.+-..|..++|++.||..|-..|
T Consensus 42 ~A~~aL~~~~~~~~~~~l~~ll~~~d------~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aL 115 (280)
T PRK09687 42 SSIRVLQLRGGQDVFRLAIELCSSKN------PIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINAT 115 (280)
T ss_pred HHHHHHHhcCcchHHHHHHHHHhCCC------HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 35566666666777777777655332 37888888888888864 467776666522788999999998888
Q ss_pred hhhcC
Q 019243 250 YILQA 254 (344)
Q Consensus 250 yILEA 254 (344)
.-+-.
T Consensus 116 G~~~~ 120 (280)
T PRK09687 116 GHRCK 120 (280)
T ss_pred hcccc
Confidence 88744
No 181
>PRK10780 periplasmic chaperone; Provisional
Probab=59.71 E-value=1.3e+02 Score=26.69 Aligned_cols=29 Identities=31% Similarity=0.569 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 019243 100 DWEKEMRRRVKEIEEM-RELEKKAEELQSK 128 (344)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 128 (344)
.-|++...+-+|++.+ .|+.++.+++|..
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555566666655 4666677777765
No 182
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=59.38 E-value=19 Score=30.00 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=14.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHh
Q 019243 317 VGLEKNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 317 vgt~~N~fiwvAl~~~~vLlG~tl~L 342 (344)
++.+.||- |++.+.+.+++.+++|+
T Consensus 24 ~~~~~sp~-W~~p~m~~lmllGL~Wi 48 (87)
T PF06781_consen 24 VKAKPSPR-WYAPLMLGLMLLGLLWI 48 (87)
T ss_pred ccCCCCCc-cHHHHHHHHHHHHHHHH
Confidence 34467776 55555555555555554
No 183
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=58.81 E-value=26 Score=31.21 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019243 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSK 128 (344)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (344)
+|+|=+.-|+|+|. .++.|++.+++++..
T Consensus 97 ~~~WGkkaRrRqkk--~~k~l~~~~e~~~~~ 125 (140)
T PF07543_consen 97 VFGWGKKARRRQKK--QQKKLEEAEEQRREE 125 (140)
T ss_pred CccccHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 58999999999997 477888888888777
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.55 E-value=13 Score=22.54 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 019243 211 WLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.|+.+|...|+.++|..+++.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 47889999999999999999987
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=58.31 E-value=29 Score=39.38 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc---------------hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---------------GGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l---------------GGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
..--|-.|...+++|+|.++.-. .++...+.+++. .-.+-+.||.||+..|+.++|++.++.+
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44567778889999999998877 767766666521 1158899999999999999999999999
Q ss_pred H
Q 019243 233 E 233 (344)
Q Consensus 233 ~ 233 (344)
.
T Consensus 143 L 143 (906)
T PRK14720 143 V 143 (906)
T ss_pred H
Confidence 8
No 186
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=58.08 E-value=18 Score=35.58 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~-~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
...+.+...+.+|....|+.+|+..+. ...+..++ ..|+.||..++..|+.+=|..+|+.|...-....+..|==.|
T Consensus 215 ~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf--~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L 292 (301)
T TIGR03362 215 ELREEARALAAEGGLEAALQRLQQRLAQAREPRERF--HWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPAL 292 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHH
Confidence 455678888999999999999998554 23333333 678889999999999999999999998544444555554444
Q ss_pred Hhhh
Q 019243 249 RYIL 252 (344)
Q Consensus 249 LyIL 252 (344)
+.-+
T Consensus 293 ~~~l 296 (301)
T TIGR03362 293 ALRV 296 (301)
T ss_pred HHHH
Confidence 4443
No 187
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=57.71 E-value=56 Score=24.30 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcCC
Q 019243 206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAP 255 (344)
Q Consensus 206 GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEAP 255 (344)
..+|...+.+....| ..+++..-..+. +|+|+.||.+|-..|..+..|
T Consensus 14 ~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 14 PQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp HHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCH
Confidence 367777777777665 567888888888 899999999999988876543
No 188
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.43 E-value=25 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
++-+.++.+|...|+.++|+..+++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999998876
No 189
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.41 E-value=30 Score=35.99 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALC 229 (344)
+.|+--|.-|+|++|-..|...+++.+.. ..-+.|..+|....|-+.|+-++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~-----dTfllLskvY~ridQP~~AL~~~ 279 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHP-----DTFLLLSKVYQRIDQPERALLVI 279 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCch-----hHHHHHHHHHHHhccHHHHHHHH
Confidence 45777777788888888887777765542 23344444444444444444433
No 190
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.32 E-value=32 Score=36.20 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S 202 (344)
......|..++..|..++|.+|++....|++.+.|++
T Consensus 517 ~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~ 553 (569)
T PRK04778 517 EEVAEALNEAERLFREYDYKAALEIIATALEKVEPGV 553 (569)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcH
Confidence 4466899999999999999999999999999888854
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.04 E-value=39 Score=35.68 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.|=.++---..|+|.+|+++++.++. +||.-.+.-|+.+..|-..|+.++|......-.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456666689999999999999999 566778999999999999999999987655543
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=56.70 E-value=23 Score=26.11 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI 197 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~ 197 (344)
..+...+..|..-...|+|.+|+++++.+++.
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45777899999999999999999999998864
No 193
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=56.38 E-value=49 Score=37.61 Aligned_cols=53 Identities=30% Similarity=0.398 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 019243 103 KEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAK 159 (344)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~ 159 (344)
+..++-|.++++|-+..+.+||-|.+..++.- |-+.|++++...+..+++-|+
T Consensus 210 kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~----r~eeEEer~~ee~E~~~eEak 262 (1064)
T KOG1144|consen 210 KKKPKGVRAMQEALAKRQEEEERQKREEEERL----RREEEEERRREEEEAQEEEAK 262 (1064)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34566699999999999999999888877663 344444444433443444443
No 194
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=55.78 E-value=19 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLE 192 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE 192 (344)
..+..|...+.+|++.+|.++|+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35678999999999999999986
No 195
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.30 E-value=34 Score=32.74 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..|+.++..++.|+|..|+..|..++... ..+.+..=+.+=|+...-..|+.++|+.+-.+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 56778888888888888888888766532 2345556666667777777777777776665554
No 196
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=54.80 E-value=35 Score=32.99 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 174 LGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 174 aG~aALerG--~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+-.-|..| .|+.|.-+|+..++.++. ...+...++.|++..|+.++|..+.++-....|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 333444455 699999999998776543 2477889999999999999999998875434443
No 197
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=54.75 E-value=1e+02 Score=24.02 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
-...|+..++.+...++.|+|..|+-++..++.
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e 36 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVE 36 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788899999999999999999988877765
No 198
>PF12854 PPR_1: PPR repeat
Probab=54.54 E-value=16 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.5
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 019243 211 WLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~ 231 (344)
.|+.+|...|+.++|+.|-..
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 588999999999999998664
No 199
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.86 E-value=73 Score=27.71 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S 202 (344)
.++.+|++|+|-.|++++|..+..+....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 47889999999999999999998776544
No 200
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.25 E-value=1.3e+02 Score=33.74 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHH
Q 019243 146 KRMRVRRELEKVAKEQAERRAT---------A-------QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGE 207 (344)
Q Consensus 146 ~~~rv~~~le~~a~e~a~~~e~---------a-------~~~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGE 207 (344)
.|+++..+=+=++.|.-++... + ......+...|+-.+|-.|+++++.-+..++. -+..-.+
T Consensus 316 sr~l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK 395 (872)
T KOG4814|consen 316 SRFLITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAK 395 (872)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 4677766665555554443321 1 12345677889999999999999998876652 2445589
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 208 IQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 208 aQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
+|=.|+.||-+.-|.++|...++.-. +|-
T Consensus 396 ~qR~l~~CYL~L~QLD~A~E~~~EAE-~~d 424 (872)
T KOG4814|consen 396 IQRALQVCYLKLEQLDNAVEVYQEAE-EVD 424 (872)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-hhc
Confidence 99999999999999999999999999 784
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=52.70 E-value=2e+02 Score=26.82 Aligned_cols=69 Identities=19% Similarity=0.086 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
+++.=-+|+-..|+.-|+.+++.....++..-++-..-..-|.-.|+.++|.+=...-. +-..+--|.|
T Consensus 84 AQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA-~LGS~FAr~Q 152 (175)
T KOG4555|consen 84 AQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAA-QLGSKFAREQ 152 (175)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHH-HhCCHHHHHH
Confidence 33444578888888888888888888888877888888888888888888877665555 4545444443
No 202
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=51.87 E-value=1.2e+02 Score=26.42 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLat 214 (344)
......++.+..|+.+|+|.+|-.+||.|==......-....+-.+|-.
T Consensus 7 ~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~ 55 (112)
T PF12487_consen 7 PAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLR 55 (112)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHH
Confidence 4456789999999999999999999999544444444445555555443
No 203
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.61 E-value=25 Score=38.46 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
-|=.|...+++++|..|.=+|..|+...|.++- +--.+-+.|.+.|+.++|+.++.+-.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 344577889999999999999999998887653 44556678999999999999998765
No 204
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.60 E-value=39 Score=36.57 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=41.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 179 LerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
++-+=...||.+||.+.-..| .-..-||..|.|+...|+.++|..+|+.+-.+.|.
T Consensus 637 idtqf~ekai~y~ekaaliqp----~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQP----NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 334444568888888654322 33578999999999999999999999998755553
No 205
>PRK09687 putative lyase; Provisional
Probab=50.60 E-value=1.1e+02 Score=29.51 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHhhCCCHHHHHHHHHHHhhhc
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-----ADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~-----ekAIALCq~L~~~HPd~qVRqQAK~LLyILE 253 (344)
.+++..|...+..-+. ..++-..|.|+--.|.. .+|+..+..+. .|+++.||..|-.-|.-+.
T Consensus 89 ~~a~~~L~~l~~~D~d-----~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 89 DNVFNILNNLALEDKS-----ACVRASAINATGHRCKKNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHHHHhcCCC-----HHHHHHHHHHHhcccccccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC
Confidence 3567777665332111 46676666666444432 35678888887 8999999999999885443
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=50.59 E-value=1.1e+02 Score=23.17 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..|+|..++..+..++...+.. ...+...+..+|...|+.++|+..+....
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 3444555555555444433322 33444444445555555555555544444
No 207
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.41 E-value=52 Score=35.19 Aligned_cols=82 Identities=27% Similarity=0.264 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYE 217 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG------------------------------EaQmwLatAYe 217 (344)
+..-|=.|.-.|.+.+|++|+-+-|+++..-+.+-+... +.--.|+-+|-
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 444555666677777777777777776665554433211 22235778888
Q ss_pred HcCChHHHHHHHHH-----------------HHhhCCCHHHHHHHHHHHh
Q 019243 218 ANNRHADCIALYKQ-----------------LESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 218 A~Gq~ekAIALCq~-----------------L~~~HPd~qVRqQAK~LLy 250 (344)
+.|++.+|..++.. +. ..|+|..|+.||.++.
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V-~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLV-LFPDPRMREKAKKFAE 428 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhccee-eccCchhHHHHHHHHH
Confidence 88888888877653 33 4588999999998764
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.38 E-value=97 Score=32.79 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCC
Q 019243 150 VRRELEKVAKEQAERR----ATAQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTF 203 (344)
Q Consensus 150 v~~~le~~a~e~a~~~----e~a~~~leaG~aALer-G~Y~qAIelLE~a~~~~~~~S~ 203 (344)
-...|.+.++-=+-|- ......+..++.+|.+ |+|.+|++....|++.+.|++.
T Consensus 493 ~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~~ 551 (560)
T PF06160_consen 493 DNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGAY 551 (560)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCHH
Confidence 3444555555433333 4466789999999999 9999999999999998888543
No 209
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.36 E-value=1.1e+02 Score=30.59 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
+-..+|+..|+-.-|-.-....-...|. |+ ++-..-+|-|+++|+.++||..|..|..-.|.-.+-.. +=+.|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~-S~---RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K--RKlAil 130 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPG-SK---RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK--RKLAIL 130 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCC-Ch---hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH--HHHHHH
Confidence 3467899999999888877776777743 33 45567899999999999999999999966665554333 445566
Q ss_pred cC
Q 019243 253 QA 254 (344)
Q Consensus 253 EA 254 (344)
.|
T Consensus 131 ka 132 (289)
T KOG3060|consen 131 KA 132 (289)
T ss_pred HH
Confidence 55
No 210
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.20 E-value=62 Score=33.75 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCc-hHHH-------------------------------
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFF-GGEI------------------------------- 208 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S~l-GGEa------------------------------- 208 (344)
.+......++.|-+++..|.+.+||..|-.++..++.. ++. --++
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 33555678999999999999999999999888765432 221 0011
Q ss_pred -HHHHHHHHH----------------------HcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 209 -QIWLAMAYE----------------------ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 209 -QmwLatAYe----------------------A~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
|..--.||. ..++.--|-.+|+.|....|.+++.+||+++|.-=|.
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 111112222 3567778899999999889999999999998886653
No 211
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.64 E-value=55 Score=29.78 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
.+.+..+.|+..+.+|+|..++.+|-.|+..++.+
T Consensus 80 ~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 80 FFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 46678899999999999999999999999877763
No 212
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=47.27 E-value=1.9e+02 Score=30.46 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 99 YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178 (344)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aA 178 (344)
-+..+|+++-|.-+.+|+.+-.+-|+=...+-..= +++.++|.+. -+.|+|..++++.++.....-..|
T Consensus 12 kyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL------~k~kk~KeeA-----l~l~~e~e~kLee~e~~Cn~sm~~ 80 (436)
T PF01093_consen 12 KYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTL------EKSKKEKEEA-----LKLANEVEEKLEEEEEVCNESMMA 80 (436)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999998655555333332222 3444555443 456777888888888888888887
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 019243 179 YGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 179 LerG~Y~qAIelLE~a~~ 196 (344)
+ ..+|---|+..|-
T Consensus 81 l----WeECkpCL~~tCm 94 (436)
T PF01093_consen 81 L----WEECKPCLKQTCM 94 (436)
T ss_pred H----HHHHHHHHHHHhH
Confidence 7 8888888887773
No 213
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=47.25 E-value=26 Score=29.61 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=31.1
Q ss_pred cCChHHHHHHHHH-HHhhCCCHHHHHHHHHHHhhhcC
Q 019243 219 NNRHADCIALYKQ-LESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 219 ~Gq~ekAIALCq~-L~~~HPd~qVRqQAK~LLyILEA 254 (344)
...++++|.+|+. +...-.|+.||++|...|..|+.
T Consensus 95 i~~h~~~l~~~~~~~~~~~~~~~lk~~a~~~lp~l~~ 131 (139)
T PF13628_consen 95 IKAHEKALALFEKQLAASGKDPELKAFAQETLPVLEA 131 (139)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHH
Confidence 5568999999998 66588999999999999988864
No 214
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=47.06 E-value=41 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=13.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHh
Q 019243 318 GLEKNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 318 gt~~N~fiwvAl~~~~vLlG~tl~L 342 (344)
+++.||- ||+.+.+.+.+.+++|+
T Consensus 26 ~~~~sP~-W~~~~m~~lm~~Gl~Wl 49 (87)
T PRK02251 26 GTKSNPR-WFVPLFVALMIIGLIWL 49 (87)
T ss_pred cCCCCCc-hHHHHHHHHHHHHHHHH
Confidence 5567776 55555555555555554
No 215
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=46.73 E-value=54 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 228 LYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 228 LCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
+-+....+-+|+-||.+|+.+|..|++
T Consensus 9 ~Lk~V~~~D~D~lvr~hA~~~Le~Le~ 35 (36)
T PF10304_consen 9 TLKYVESTDNDDLVREHAQDALEELEA 35 (36)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 334444567899999999999999986
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=46.50 E-value=41 Score=21.80 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.5
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 228 LYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 228 LCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
...++. ++|++.||..|-+-|..+
T Consensus 4 ~l~~~l-~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLL-NDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHH-T-SSHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 344566 799999999999877644
No 217
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.48 E-value=2.5e+02 Score=26.11 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 140 EETEEEKRMRVRRELEKVAKEQAERR-ATAQL----MFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 140 ~~~~~~~~~rv~~~le~~a~e~a~~~-e~a~~----~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
-+.-.+...+++....+.|++++++. +.|+. .-+.+...+...=..-|++.-+.++.
T Consensus 120 i~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~ 181 (205)
T PRK06231 120 IDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIK 181 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666665554 22333 33334444455555555555555443
No 218
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=46.43 E-value=1.5e+02 Score=34.24 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 019243 107 RRVKEIEEMRELE 119 (344)
Q Consensus 107 ~~~~~~~~~~~~~ 119 (344)
++-+|-.+.+++|
T Consensus 439 r~e~e~~er~~~e 451 (1021)
T PTZ00266 439 RIEKENAHRKALE 451 (1021)
T ss_pred HHHHHHHHHHHHH
Confidence 3334433333333
No 219
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=45.51 E-value=87 Score=34.73 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..+..+-..+...+.|.++.|+++|...-. .---.--...-.+.-|+..||.++|+.+|+.|..++||
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~----~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK----QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh----HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
No 220
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.06 E-value=47 Score=24.92 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
.|-.+..-+.-|+|..|..+++.++..-|.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 5778889999999999999999999977764
No 221
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=44.67 E-value=3.4e+02 Score=27.22 Aligned_cols=35 Identities=37% Similarity=0.684 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhccC
Q 019243 99 YDWEKEMRRRVKEIEEMR-ELEKKAEELQSKAEEDD 133 (344)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (344)
+-||+..-.-||.-|-|| +.+||-..|+..-..+.
T Consensus 91 yaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~ 126 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGA 126 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCc
Confidence 789999999999999987 67888888876644443
No 222
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.37 E-value=1.4e+02 Score=34.29 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019243 107 RRVKEIEEMRELEKKAE 123 (344)
Q Consensus 107 ~~~~~~~~~~~~~~~~~ 123 (344)
+|+.+|+|.-|.|++..
T Consensus 924 er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 924 ERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555555554443
No 223
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=43.27 E-value=86 Score=33.47 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
..+--|++.|+-|++.+||.+|..++...|. .....-.|+.||...|+..+|..
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~----dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPE----DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHhCchHHHHH
Confidence 4566799999999999999999998875443 23445566666666666555543
No 224
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=43.02 E-value=1.2e+02 Score=30.02 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 019243 153 ELEKVAKEQAERRAT--AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYK 230 (344)
Q Consensus 153 ~le~~a~e~a~~~e~--a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq 230 (344)
..+.++--|+.++.. ....=..|.--+-+|+|..|..+|.++... .+.+..|.--||.+.-.+|+.+.|-.+..
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 334444444444433 222334577788899999999999998873 34456888899999999999999999888
Q ss_pred HHH
Q 019243 231 QLE 233 (344)
Q Consensus 231 ~L~ 233 (344)
+..
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 776
No 225
>PLN03077 Protein ECB2; Provisional
Probab=42.94 E-value=1.2e+02 Score=32.90 Aligned_cols=50 Identities=6% Similarity=0.060 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
.|++.+|.++|+......+. .-..+.--.|+.+|...|+.++|..+.+..
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi--~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSI--TPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred cChHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 46666666666665533322 111245566788888888888888887775
No 226
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.86 E-value=2e+02 Score=30.43 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIE--FLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 158 a~e~a~~~e~a~~~leaG~aALerG~Y~qAIe--lLE~a~~-~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
|.|.+.-..+|+..|+.++.|-+ +.|+++-+ +--+.-+ ...+.+..-.-+.--||||-...|+..+|+...+.|.+
T Consensus 225 AEEEa~Ti~~AE~l~k~ALka~e-~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 225 AEEEATTIVDAERLFKQALKAGE-TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34445555567777777766654 45654433 2221111 22233444445566689999999999999999999997
Q ss_pred hCCCHHHHH
Q 019243 235 NHPSKNIRR 243 (344)
Q Consensus 235 ~HPd~qVRq 243 (344)
..|-..+-.
T Consensus 304 e~pl~t~ln 312 (556)
T KOG3807|consen 304 EFPLLTMLN 312 (556)
T ss_pred hccHHHHHH
Confidence 677554433
No 227
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.73 E-value=3.2e+02 Score=26.35 Aligned_cols=82 Identities=20% Similarity=0.085 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq 243 (344)
....|...|+....++..+.- .++..+|.... .++.|..|..+-|-+|.++--.|+.++|++--++-.....|..++-
T Consensus 49 q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~-~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~ 126 (207)
T COG2976 49 QAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQ-ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKA 126 (207)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHH
Confidence 334577889999999987777 88888888554 4446778889999999999999999999998886653445555554
Q ss_pred HHHH
Q 019243 244 QAAD 247 (344)
Q Consensus 244 QAK~ 247 (344)
-++.
T Consensus 127 l~~l 130 (207)
T COG2976 127 LAAL 130 (207)
T ss_pred HHHH
Confidence 4443
No 228
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.70 E-value=53 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 185 GRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 185 ~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
...|++|+.|.++.. ...+....+-..||.-|...|+.++|+.+.+.+.+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356899999988555 44777888889999999999999999999999873
No 229
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.57 E-value=83 Score=35.35 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFE-LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~le-aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..|. .|-..=+||+.+.|+.+.+.++..-| .-..+-+.|+.||+..|+.+.|..+|.+-..-+|+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p----~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKP----KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCc----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 3444 56666789999999999999998544 45789999999999999999999999886634553
No 230
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=42.33 E-value=29 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.7
Q ss_pred HHHHHhhCCCHHHHHHHHHHHhhhc
Q 019243 229 YKQLESNHPSKNIRRQAADLRYILQ 253 (344)
Q Consensus 229 Cq~L~~~HPd~qVRqQAK~LLyILE 253 (344)
-..|. +|+|++|+.-|+.|+..+.
T Consensus 47 v~~Lr-kh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 47 VNGLR-KHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 45788 8999999999999998764
No 231
>PLN03218 maturation of RBCL 1; Provisional
Probab=41.75 E-value=1.1e+02 Score=35.19 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
....|++..|+++|+.....- -.....+-..|+.+|...|+.++|+.+++.+.
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345677778887777766421 12234566778888888888888888888876
No 232
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.71 E-value=93 Score=33.88 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH--------------HHhh
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ--------------LESN 235 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~--------------L~~~ 235 (344)
..|+.|...|+.|+.+.|+=.||.++.+- |-..++=.+|-+..--+++...||+--+. |.-+
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 57999999999999999999999999844 55678888888888888888888864332 2235
Q ss_pred CCCHHHHHHHHHHHhhh
Q 019243 236 HPSKNIRRQAADLRYIL 252 (344)
Q Consensus 236 HPd~qVRqQAK~LLyIL 252 (344)
|-|.....+|-.+|+-+
T Consensus 363 ytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 66677777777777655
No 233
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=41.68 E-value=45 Score=21.84 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=5.3
Q ss_pred CCCCCCcch
Q 019243 315 PPVGLEKNR 323 (344)
Q Consensus 315 PPvgt~~N~ 323 (344)
|-+|.+.+.
T Consensus 3 P~TG~~~~~ 11 (34)
T TIGR01167 3 PKTGESGNS 11 (34)
T ss_pred CCCCCcccH
Confidence 567865544
No 234
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.66 E-value=56 Score=35.46 Aligned_cols=54 Identities=30% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA 225 (344)
+...++.+..||.+|+|+=|.++|..++-.-| -.-+++-..|-||+..|=..++
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp----~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADP----GNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCC----ccHHHHHHHHhHHHHhhhhhcc
Confidence 56789999999999999999999999886433 3458899999999999876665
No 235
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.64 E-value=88 Score=29.16 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----HHHHHHHHHHH
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRRQAADLR 249 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S--~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd----~qVRqQAK~LL 249 (344)
....++.-|..|+++++.+........ --...+-..++--+...|+.++|+.....+. .|++ +.+.+.|+.+-
T Consensus 133 ~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi-~~~~~s~~~~l~~~AR~~w 211 (214)
T PF09986_consen 133 DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI-GSKKASKEPKLKDMARDQW 211 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHH
Confidence 345555558889999999887554422 2223566678888999999999999999998 7765 35677777664
No 236
>PF13041 PPR_2: PPR repeat family
Probab=41.30 E-value=42 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 211 WLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.|+.+|...|+.++|+.+++...++.-.|
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P 36 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKP 36 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 47789999999999999999998443333
No 237
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.04 E-value=43 Score=23.70 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
-...|.-.++.++|.+|++=|+.++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 238
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.02 E-value=2.1e+02 Score=27.62 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-HPSKNIRRQAADLR 249 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~-HPd~qVRqQAK~LL 249 (344)
.+.++-..+..|.|.+....+|+... ..++.-.-++=.|..|--..|+..+|..+..+|..- .....||+.|+-+|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~---d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAG---DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccC---CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 57788899999999999999999554 344555678888888888999999999999999821 12246888888887
Q ss_pred hhhcC
Q 019243 250 YILQA 254 (344)
Q Consensus 250 yILEA 254 (344)
..+.+
T Consensus 212 dlI~s 216 (221)
T COG4649 212 DLIDS 216 (221)
T ss_pred HHHhc
Confidence 76543
No 239
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=40.74 E-value=60 Score=27.28 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=13.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHh
Q 019243 317 VGLEKNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 317 vgt~~N~fiwvAl~~~~vLlG~tl~L 342 (344)
++.+.||- |++.+.+.+.+.+++|+
T Consensus 24 ~~~~~sp~-W~~~~m~glm~~GllWl 48 (87)
T PRK00159 24 VKAGPSSV-WYVVLMLGLMLIGLAWL 48 (87)
T ss_pred ccCCCCCc-cHHHHHHHHHHHHHHHH
Confidence 45566776 55545544444445554
No 240
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=40.65 E-value=2.9e+02 Score=25.34 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..--.++..-.|+..++-..+-.+|...--.-|. -.++.+.-+.-|...|+..+|+.+-+.+..+.|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE----FPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 4445778888999999999888888874444332 358899999999999999999999999985555
No 241
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=40.56 E-value=84 Score=35.94 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
.|...++.|.|.+|...||+ ......++.. .--.+..+|+-.|+.++|..+|+....++|+.+
T Consensus 49 kaLsl~r~gk~~ea~~~Le~-~~~~~~~D~~---tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLEA-LYGLKGTDDL---TLQFLQNVYRDLGKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred HHHHHHHhcCchhHHHHHhh-hccCCCCchH---HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHH
Confidence 35667889999999999998 4444444333 333578899999999999999999887888743
No 242
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.27 E-value=55 Score=31.23 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 019243 114 EMRELEKKAEELQSKA 129 (344)
Q Consensus 114 ~~~~~~~~~~~~~~~~ 129 (344)
.|+++.+.+.|+|.+.
T Consensus 73 km~~~qk~m~efq~e~ 88 (201)
T COG1422 73 KMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455554433
No 243
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=40.05 E-value=1.3e+02 Score=25.52 Aligned_cols=64 Identities=19% Similarity=0.032 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 019243 153 ELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (344)
Q Consensus 153 ~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq 221 (344)
+++..+.+.=.---.|+..+-.++.+.+.|+|.+|-++|+.+-+... .+-++|.-|... ++.|+
T Consensus 5 ~le~~~~~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~----~AH~~qt~liq~-Ea~g~ 68 (104)
T PRK09591 5 ELQVAAFEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL----EAHHAQTKLLQE-YASGT 68 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HhCCC
Confidence 35566665555556688999999999999999999999999776332 234566555533 33443
No 244
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.96 E-value=32 Score=32.00 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=17.1
Q ss_pred CCCCCC--cchhHHHHHHHHHHHHHHHH
Q 019243 315 PPVGLE--KNRAFWVGLTLWFGLVGAAI 340 (344)
Q Consensus 315 PPvgt~--~N~fiwvAl~~~~vLlG~tl 340 (344)
||+++. ...+||+++.|+++++.+--
T Consensus 45 p~~~~~~~~~~l~w~~I~FliL~~lL~k 72 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGLFYLFMSR 72 (204)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHHHHH
Confidence 666665 45688988877666655433
No 245
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.96 E-value=2.8e+02 Score=30.02 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
..+..++...-.|.|..+|.+||.++...+.- -.---|+-...++|..++|+.-|+.-....|+.+-...-=+.|
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 34556677788999999999999999877652 3445566777899999999999887665777766544444444
Q ss_pred h
Q 019243 250 Y 250 (344)
Q Consensus 250 y 250 (344)
.
T Consensus 515 E 515 (564)
T KOG1174|consen 515 E 515 (564)
T ss_pred H
Confidence 3
No 246
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.52 E-value=2e+02 Score=27.15 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-----------~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
.|.+||.-||.|+...|. ...+-..+..||...|. .++|....+.-....|+.++=+.+=++-.
T Consensus 50 miedAisK~eeAL~I~P~----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-
Confidence 677888888888887664 35778888888888776 56777777777767888888777766553
Q ss_pred hcCCCC
Q 019243 252 LQAPKL 257 (344)
Q Consensus 252 LEAPkL 257 (344)
.||.|
T Consensus 125 -kap~l 129 (186)
T PF06552_consen 125 -KAPEL 129 (186)
T ss_dssp -THHHH
T ss_pred -hhHHH
Confidence 56644
No 247
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=39.32 E-value=2.3e+02 Score=34.45 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 182 G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
|.=..+.+-||.||+.+.+ -.+-+-|.--|+..++.++|+.|++...++.. .+.+-|-.+.-+.|
T Consensus 1511 G~eesl~kVFeRAcqycd~-----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA-----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLL 1575 (1710)
T ss_pred CcHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHh
Confidence 3445667788899988886 46778889999999999999999999887776 45555544443333
No 248
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=38.67 E-value=3.6e+02 Score=28.29 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 019243 107 RRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRM--RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMY 184 (344)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y 184 (344)
||-.=+.+++||+.++.-+-+-++.-+ - .+.-...|+ +.-+.|.+.-.= .-+.....|+-++.-|++|+|
T Consensus 74 kr~~Vla~lkeLe~ev~piv~~le~Pd--~---~~~~~~~k~~~~~l~~L~e~ynf---~~e~i~~lykyakfqyeCGNY 145 (432)
T KOG2758|consen 74 KRTEVLAELKELEEEVAPIVKVLENPD--L---IAALRSDKDRVQNLQHLQEHYNF---TPERIETLYKYAKFQYECGNY 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHH--H---HHHHHhhhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhccCc
Confidence 334445677777777766555443221 1 111111122 222233322211 124456789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 019243 185 GRAIEFLEGALTIIPRPTF 203 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~ 203 (344)
+-|-.+|--+...++.+.+
T Consensus 146 ~gAs~yLY~~r~l~~~~d~ 164 (432)
T KOG2758|consen 146 SGASDYLYFYRALVSDPDR 164 (432)
T ss_pred ccHHHHHHHHHHhcCCcch
Confidence 9999999998888887766
No 249
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.49 E-value=92 Score=34.51 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccC
Q 019243 112 IEEMRELEKKAEELQSKAEEDD 133 (344)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~ 133 (344)
-.|+.|||.|-.||+|.+++-.
T Consensus 92 s~EL~ele~krqel~seI~~~n 113 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEIN 113 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3689999999999999887544
No 250
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=38.31 E-value=81 Score=23.34 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhccCc
Q 019243 114 EMRELEKKAEELQSKAEEDDS 134 (344)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~ 134 (344)
..|++|-|.-+|+.++++.+-
T Consensus 5 rkR~IElk~~elrd~LEe~g~ 25 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 347888888899999888774
No 251
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.20 E-value=1.3e+02 Score=28.83 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhCCCCCCchHHH----HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 186 RAIEFLEGALTIIPRPTFFGGEI----QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 186 qAIelLE~a~~~~~~~S~lGGEa----QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
.||-.|+.+....+..-.+..++ +...|..++.+|..++|+.+-+.+- ..|+..-. =..|+.|..-
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~-~d~~~~~~--r~kL~~II~~ 156 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF-SDPESQKL--RMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-cCCCchhH--HHHHHHHHHc
Confidence 47778888888888755566665 4567889999999999999999998 65555444 5567777754
No 252
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.16 E-value=1.1e+02 Score=33.64 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
|+.+--+|+.+..++|+..+.. |+..+ -.++-.-|.....+|+.++|..+|+.|. +|...+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~-~~~~~------~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG-LDRLD------DKLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQD 145 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc-ccccc------hHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHH
Confidence 5888889999999999999983 44332 2455566667789999999999999998 45444433
No 253
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.58 E-value=1.3e+02 Score=27.56 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243 168 AQLMFELGQKAYGK---GMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 168 a~~~leaG~aALer---G~Y~qAIelLE~a~~-~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq 243 (344)
.+..|.-+-+.... -+-++-|.+||.... .+|...+ +--..||.+|...|+.++|+.+|..|...-||. +
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n---~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN---R 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---H
Confidence 34455555555543 346778999999886 4443333 456899999999999999999999999444553 5
Q ss_pred HHHHHHhhhcC
Q 019243 244 QAADLRYILQA 254 (344)
Q Consensus 244 QAK~LLyILEA 254 (344)
||..|-.-++.
T Consensus 106 Qa~~Lk~~ied 116 (149)
T KOG3364|consen 106 QALELKETIED 116 (149)
T ss_pred HHHHHHHHHHH
Confidence 67777665543
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=37.41 E-value=89 Score=32.21 Aligned_cols=66 Identities=18% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
-.+..|....-+|+-..||+.|+.++.....--.+..-.-.-++.+|..+++.++|......|. .+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~-~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL-KE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH-hc
Confidence 4788899999999999999999987742221122333344457889999999999999999998 44
No 255
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.31 E-value=65 Score=34.98 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCHHHHHHHHHHHh
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-NHPSKNIRRQAADLRY 250 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-~HPd~qVRqQAK~LLy 250 (344)
...|-.||..|+|..|.++...++. +..-..++-+-.-.-|.+.|+.++|+.+.-+|-. -.-+.+|--|-..+..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~----ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALN----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHc----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3447778999999999999999887 5566778888888999999999999998776631 0125566666666666
Q ss_pred hhcCCCCCCCcccccc
Q 019243 251 ILQAPKLKISQEEMVT 266 (344)
Q Consensus 251 ILEAPkLkrp~ew~ve 266 (344)
.||.|.- .-+|.++
T Consensus 570 ~led~aq--aie~~~q 583 (840)
T KOG2003|consen 570 LLEDPAQ--AIELLMQ 583 (840)
T ss_pred HhhCHHH--HHHHHHH
Confidence 6777632 2355554
No 256
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=36.76 E-value=59 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
+.|+..|+.++..++.|.|..|+=+...+++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavE 32 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAE 32 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4577899999999999999888776666654
No 257
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.33 E-value=4.4e+02 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhhhccCc
Q 019243 115 MRELEKKAEELQSKAEEDDS 134 (344)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~ 134 (344)
+.+++.+..+|..+..++.|
T Consensus 263 l~~le~~l~~l~~~y~~~hP 282 (444)
T TIGR03017 263 IARAESKLAELSQRLGPNHP 282 (444)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 33445555555555555554
No 258
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=36.28 E-value=2e+02 Score=24.13 Aligned_cols=63 Identities=22% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 019243 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (344)
Q Consensus 154 le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq 221 (344)
++..+.+.=..--.|+..+-.++.+.+.|+|..|-++|+.+-+... .+-++|.-|+.- ++.|+
T Consensus 3 ~e~~~~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~----~AH~~qt~liq~-ea~g~ 65 (99)
T TIGR00823 3 MELVGFELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCLN----EAHLAQTSLLAQ-EAGGG 65 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HhcCC
Confidence 4555555444456688899999999999999999999999776332 234566655533 33443
No 259
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=1.3e+02 Score=32.90 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
.....+.+..+|.+++|.+|.+++++.++..|++++--+ ++ ++ +|.-.|+..+=.-|.-+|...||+..|.=-|=-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~-~~--ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP-LH--IA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH-HH--HH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 335677899999999999999999999998888776532 23 33 888899999999999999999999887654444
Q ss_pred HH
Q 019243 248 LR 249 (344)
Q Consensus 248 LL 249 (344)
+-
T Consensus 320 ~Y 321 (611)
T KOG1173|consen 320 CY 321 (611)
T ss_pred HH
Confidence 33
No 260
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=36.04 E-value=42 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.1
Q ss_pred HHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 229 YKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 229 Cq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
-..|. +|++++|+..|+.|+.-+..
T Consensus 49 V~~Lr-kh~~~~i~~~A~~Lv~~Wk~ 73 (76)
T cd00183 49 VNSLR-KHSNEKIRKLAKALIKSWKK 73 (76)
T ss_pred HHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 46788 89999999999999887643
No 261
>PLN02789 farnesyltranstransferase
Probab=35.78 E-value=2.2e+02 Score=28.02 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhhCCCCCCchHHHHHHH--HHHHHHcCCh--HHHHHHHHHHHhhCCC
Q 019243 175 GQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWL--AMAYEANNRH--ADCIALYKQLESNHPS 238 (344)
Q Consensus 175 G~aALerG-~Y~qAIelLE~a~~~~~~~S~lGGEaQmwL--atAYeA~Gq~--ekAIALCq~L~~~HPd 238 (344)
|......| .|.+++.+++.++...|. ..|+|- ..++...|+. ++++.+|......+|.
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk 140 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK 140 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc
Confidence 33444445 466777777776665544 223343 3344555553 5666777444324443
No 262
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.69 E-value=4.2e+02 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019243 141 ETEEEKRMRVRRELEKVAKEQAE 163 (344)
Q Consensus 141 ~~~~~~~~rv~~~le~~a~e~a~ 163 (344)
..+++-|++-+++|+.-=..+-+
T Consensus 128 k~k~ElrekAkKelddwy~~~~e 150 (216)
T KOG4031|consen 128 KLKEELREKAKKELDDWYDQQNE 150 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544443333
No 263
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.61 E-value=69 Score=34.96 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCCHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ-LESNHPSKNIRRQAADLR 249 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~-L~~~HPd~qVRqQAK~LL 249 (344)
..-.|-.+=+.+.|..||..+..++...|.+... --.++-.|.-.|..+.||.-+.+ |. -.|+-++- .++|
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~----~asig~iy~llgnld~Aid~fhKaL~-l~p~n~~~---~~lL 529 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST----HASIGYIYHLLGNLDKAIDHFHKALA-LKPDNIFI---SELL 529 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH----HHHHHHHHHHhcChHHHHHHHHHHHh-cCCccHHH---HHHH
Confidence 4455667777777777777777777766654333 33445566777777888776543 44 55665332 2222
Q ss_pred -hhhcCCCCCCCcccccccCCCC
Q 019243 250 -YILQAPKLKISQEEMVTIPLIG 271 (344)
Q Consensus 250 -yILEAPkLkrp~ew~veIPdL~ 271 (344)
.-+|...++...+-...||...
T Consensus 530 ~~aie~~~~~~~~~~~~~~~~~~ 552 (611)
T KOG1173|consen 530 KLAIEDSECKSGVDSKDYITCYN 552 (611)
T ss_pred HHHHHhhhhhcccccccccchhh
Confidence 2355555666666666665544
No 264
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.02 E-value=3.1e+02 Score=28.22 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019243 103 KEMRRRVKEIEEMRELEKKAEELQSKAE 130 (344)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (344)
.++++|--|-++.+|||..|||-..+.+
T Consensus 321 ~e~kkrqlerqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 321 AEIKKRQLERQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888889888888665544
No 265
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.91 E-value=1.5e+02 Score=32.95 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 173 ELGQKAYGKGMYGR-AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 173 eaG~aALerG~Y~q-AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
..+..+|.+-.... ++..|..++.... .++|..-+.|+...|. ++|+...-.+. ..|++.||+.|.+.|..
T Consensus 793 ~aA~~aLg~~g~~~~~~~~l~~aL~d~d------~~VR~~Aa~aL~~l~~-~~a~~~L~~~L-~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 793 AAALAALAELGCPPDDVAAATAALRASA------WQVRQGAARALAGAAA-DVAVPALVEAL-TDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHhcCCC------hHHHHHHHHHHHhccc-cchHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 34555665544444 3466766665432 4889988999988876 45666666666 69999999999999877
Q ss_pred h
Q 019243 252 L 252 (344)
Q Consensus 252 L 252 (344)
+
T Consensus 865 ~ 865 (897)
T PRK13800 865 W 865 (897)
T ss_pred c
Confidence 6
No 266
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=34.75 E-value=1.8e+02 Score=28.49 Aligned_cols=28 Identities=32% Similarity=0.220 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 140 EETEEEKRMRVRRELEKVAKEQAERRAT 167 (344)
Q Consensus 140 ~~~~~~~~~rv~~~le~~a~e~a~~~e~ 167 (344)
-|.+-|||+++-++|+|+-++..-.+.+
T Consensus 79 Lea~VEkrD~~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 79 LEAHVEKRDEVIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999988865554444
No 267
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=33.99 E-value=40 Score=23.65 Aligned_cols=22 Identities=23% Similarity=0.825 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 019243 321 KNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 321 ~N~fiwvAl~~~~vLlG~tl~L 342 (344)
.++..|+.+++++=++|..+|+
T Consensus 20 ~~k~~W~~~i~~~P~iG~i~Yl 41 (46)
T PF13396_consen 20 SSKILWLIVILFFPIIGPILYL 41 (46)
T ss_pred chhhHHHHHHHHHHHHHHhheE
Confidence 5678999999999999999986
No 268
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.87 E-value=69 Score=34.40 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCch-HHHHHHHHHHHHHcCChHHHHHHHH
Q 019243 158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFG-GEIQIWLAMAYEANNRHADCIALYK 230 (344)
Q Consensus 158 a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lG-GEaQmwLatAYeA~Gq~ekAIALCq 230 (344)
|.|.-.+-..||.-|..|-...--.+|..||.+...-++... ...+.| +.+=..|..||-+.|.+++|+-...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444555556677888888888778889999988776665333 222332 3455679999999999999987654
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=33.20 E-value=1.4e+02 Score=31.66 Aligned_cols=153 Identities=18% Similarity=0.316 Sum_probs=79.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccCcchhhhh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019243 99 YDWEKEMRRRVKEIEEMRELEKKAEEL-QSKAEEDDSESEAKE-ETEEEKRMRVRR-ELEKVAKEQAERRATAQLMFELG 175 (344)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~rv~~-~le~~a~e~a~~~e~a~~~leaG 175 (344)
.+||..++.+=+|++.-- +. -|+.+ -.+- .=-.+++++. ++-+++|.-|+. +|----+ ..+-+.++...-+.|
T Consensus 29 ~~WE~diK~KDkel~~Q~-~~-Pan~~~P~r~-~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I-~~~LL~~~SEiKE~G 104 (536)
T KOG4648|consen 29 YSWEQDIKNKDKELQKQP-LS-PANKDLPVRS-HFRTDKSGKESPSSKKARSPIEKQDLPVDPI-AQQLLKKASEIKERG 104 (536)
T ss_pred HHHHHHHHhhhHHHHhCC-CC-ccccCCchhh-hcccCCCCCcCcchhhhhcchhhccCCccHH-HHHHHHhhHHHHHhh
Confidence 588888887766654320 00 00000 0000 0012233444 666777775541 1111101 001133333455678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-------------------HHHHH----HHHH-------HHcCChHHH
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-------------------IQIWL----AMAY-------EANNRHADC 225 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGE-------------------aQmwL----atAY-------eA~Gq~ekA 225 (344)
-.-|+||.|.+||.-.-..++..|-|--.... +-+.| +.|| .+.|...+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 89999999999999999999877744333221 11111 2233 345666777
Q ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHhhhcCC
Q 019243 226 IALYKQLESNHP-SKNIRRQAADLRYILQAP 255 (344)
Q Consensus 226 IALCq~L~~~HP-d~qVRqQAK~LLyILEAP 255 (344)
..=|.....-.| +.++|++-.++-..+|+-
T Consensus 185 KkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 185 KKDCETVLALEPKNIELKKSLARINSLRERK 215 (536)
T ss_pred HHhHHHHHhhCcccHHHHHHHHHhcchHhhh
Confidence 776765442334 346677777766666653
No 270
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=33.10 E-value=38 Score=29.22 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA-NNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 177 aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA-~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
.|+..|+++++=.++..+..... -+.+ .|....|+ -.|. +|||++||=||.-.+
T Consensus 17 ~A~~~~d~~~~Nr~~~k~~~~~~---------------eLk~r~gd~r~aL---l~LL-~hpn~~VRl~AA~~~ 71 (106)
T PF09450_consen 17 EAIDRGDARTANRLYDKMIRIYD---------------ELKSRGGDQRDAL---LPLL-KHPNMQVRLWAAAHT 71 (106)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHH---------------HHHHSTT-GGGGG---GGGG-GSS-HHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHH---------------HHHhcCcchHHHH---HHHH-cCCChhHHHHHHHHH
Confidence 57888999988888877554211 1111 22233333 3566 799999999998754
No 271
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=33.08 E-value=2.3e+02 Score=23.61 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
-+.+.++|.++.-.|-+.+|-.+|...=..+|.. -..-+..++-|-|.|+..+|+++-..
T Consensus 6 ~~L~VEaalAavNH~L~~ea~ailnalP~li~D~----~~r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 6 NKLVVEAALAAVNHSLPKEAHSILNALPQIIPDK----KDRLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhcccccCCH----hHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3578999999999999999999998765666542 24456788999999999999987544
No 272
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.83 E-value=1.6e+02 Score=28.06 Aligned_cols=27 Identities=41% Similarity=0.697 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 019243 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEE 131 (344)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (344)
|||.-+-+| |+.+|+.+.+..+.....
T Consensus 95 dwEevrLkr-----ELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKR-----ELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 899874333 445566666666655554
No 273
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.74 E-value=2.4e+02 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHhhhcCCCCCCCcccccccCC-CCCCCccc
Q 019243 244 QAADLRYILQAPKLKISQEEMVTIPL-IGSSYDSY 277 (344)
Q Consensus 244 QAK~LLyILEAPkLkrp~ew~veIPd-L~~~~d~~ 277 (344)
-.++|+.+|+.= -...|+. .+..+|+.
T Consensus 139 i~k~l~~vL~k~-------GVe~I~~~~G~~FDP~ 166 (208)
T PRK14154 139 TLDLLHNTLAKH-------GVQVINPNPGDPFDPA 166 (208)
T ss_pred HHHHHHHHHHHC-------CCEEecCCCCCCCChh
Confidence 346678888763 2335643 46555543
No 274
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.67 E-value=3.3e+02 Score=26.25 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH-----------cCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA-----------NNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y--~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA-----------~Gq~ekAIALCq~L~ 233 (344)
.|+..++.++.++..|.= ..-..-++.+.+.... +--..+++..+.+|.- .++.+.|+++|+.-.
T Consensus 128 vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dm--pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~ 205 (230)
T PHA02537 128 VAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDM--PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAF 205 (230)
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHH
Confidence 367788888889998872 1112334444443444 4445677777777743 467789999999888
Q ss_pred hhCCCHHHHHHHHHHHhhhcC
Q 019243 234 SNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 234 ~~HPd~qVRqQAK~LLyILEA 254 (344)
.-||+..|++.=++|-.-|.+
T Consensus 206 ~l~~k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 206 QLNDKCGVKKDIERLERRLKA 226 (230)
T ss_pred HhCCCCChHHHHHHHHHHHhh
Confidence 789999999887777666653
No 275
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.52 E-value=79 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 019243 211 WLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.++.||...|+.+.|..+.+...
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 57889999999999999999887
No 276
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=1.1e+02 Score=33.25 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
=|..|+--|--++|.+|++=|++++.+-|. ..=+++.|+-|...+++.+++..+.+.-.++.|+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPE----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356678888888888888888888775554 3456677778888888888888888887777775
No 277
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=32.42 E-value=1.2e+02 Score=32.05 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 203 ~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
|-..++.+-|..||...|+.++||+.|++-..-.|+..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 44568999999999999999999999998443888864
No 278
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=32.33 E-value=4.1e+02 Score=29.24 Aligned_cols=81 Identities=22% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 148 MRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 148 ~rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
++.+-=|.+.+++.++...+.+..+-.+..-.+.|+..+|-++=.- .+-.++..-....||++.-|.+.|+.+.+.+
T Consensus 350 ~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~~~g~~~~a~~Laq~---~F~r~p~~~sy~~lw~~~~~~gi~~~e~~~a 426 (587)
T COG4715 350 SKAELWLARGIRTAREQLQTTQLPQTLAELKEEEGRLGFAAELAQE---AFFRTPNGRSYLGLWLAAVYAGIGREEREAA 426 (587)
T ss_pred hHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHhhcchHHHHHHHHH---HccCCCCccchhhHHHHHHHhhhchHHHHHH
Confidence 3444445555554444456666677777888889999988765333 3333444556899999999999999999988
Q ss_pred HHHH
Q 019243 228 LYKQ 231 (344)
Q Consensus 228 LCq~ 231 (344)
+.+.
T Consensus 427 ~~~~ 430 (587)
T COG4715 427 LAYL 430 (587)
T ss_pred HHHH
Confidence 8776
No 279
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.32 E-value=1e+02 Score=26.98 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 209 QmwLatAYeA~Gq~ekAIA-LCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
++.|.-.+.+.|+.++|.. +|+.|. -||+|. +||.|++.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~-V~~qP~------~LL~i~q~ 105 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALK-VCPQPA------ELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH-TSSSHH------HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHH------HHHHHHHh
Confidence 3444555677899988866 999998 999997 88988874
No 280
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=31.81 E-value=93 Score=32.84 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 019243 210 IWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 210 mwLatAYeA~Gq~ekAIALCq~L 232 (344)
-.|+.+|...|+.++|..+.+..
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC
Confidence 34566666666666666665543
No 281
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.68 E-value=4.2e+02 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=7.0
Q ss_pred CcccccccCCCCC
Q 019243 260 SQEEMVTIPLIGS 272 (344)
Q Consensus 260 p~ew~veIPdL~~ 272 (344)
...-.|.|+.++.
T Consensus 638 ~~Gd~V~v~~~~~ 650 (782)
T PRK00409 638 KVGDEVKYLSLGQ 650 (782)
T ss_pred CCCCEEEEccCCc
Confidence 3455566666543
No 282
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.64 E-value=3.7e+02 Score=23.86 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 144 EEKRMRVRRELEKVAKEQAERR-AT----AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 144 ~~~~~rv~~~le~~a~e~a~~~-e~----a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
.+..++++.+.-..|.+.+++. +. .+..-+.+...+.+.-...|++.-+..+.
T Consensus 92 ~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~ 149 (173)
T PRK13460 92 KSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLE 149 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544 22 33344445555555556666666666554
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.53 E-value=1e+02 Score=30.73 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 182 GMYGRAIEFLEGALTIIPR-PTFFGGEIQIWLAMAYEA-NNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 182 G~Y~qAIelLE~a~~~~~~-~S~lGGEaQmwLatAYeA-~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
.+|.+||.+.|.+.+.... .+.....==+..|-.|.+ .||..+||.+|.++....-+..+-+|+..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 5788999999999885542 233333444555666665 58999999999999955556677777643
No 284
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.41 E-value=54 Score=26.65 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=15.8
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 019243 321 KNRAFWVGLTLWFGLVGAAI 340 (344)
Q Consensus 321 ~N~fiwvAl~~~~vLlG~tl 340 (344)
+|+.+|++++.+++++...+
T Consensus 9 kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 9 KNKAFWVALISAILLLVQQV 28 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 78999999988777765544
No 285
>PF13206 VSG_B: Trypanosomal VSG domain
Probab=31.29 E-value=1.2e+02 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019243 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSKAE 130 (344)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (344)
.+.|.+.++.=++++++|+....+++.++.+++
T Consensus 317 ~IpW~~~l~~a~~~L~~~~~~~~~~~~~~~~l~ 349 (351)
T PF13206_consen 317 KIPWLKKLEEAADKLEEAEKAAAEAQALATQLE 349 (351)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998875
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=31.25 E-value=2e+02 Score=33.27 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+.|++..|.++|+........-.| ..-.-..|+.+|...|+.++|+.+++.+.
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33456666666666655432100000 01233334445555555555555555544
No 287
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=31.15 E-value=2.1e+02 Score=25.39 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcC------Ch----HHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 207 EIQIWLAMAYEANN------RH----ADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 207 EaQmwLatAYeA~G------q~----ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
.+-.|+..+....| +. +..+.....+. ..++++||+.|++++-.|
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
Confidence 44556777777777 11 34555566666 699999999999999888
No 288
>COG4499 Predicted membrane protein [Function unknown]
Probab=31.06 E-value=81 Score=33.10 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHH--------------------------------
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMA-------------------------------- 215 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~-~~~~~S~lGGEaQmwLatA-------------------------------- 215 (344)
+..+..|..||=.-+|++.|.-|+++-- .+| -.||..||..
T Consensus 249 qeai~~a~~aFL~~nY~qVittLe~ydp~klP------ksv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~~llYWi 322 (434)
T COG4499 249 QEAIITANTAFLKNNYDQVITTLENYDPEKLP------KSVQYILAVSYVNLEDLTTTKKENILNNISLKSDDNYLLYWI 322 (434)
T ss_pred HHHHHHHHHHHHhccHHHHhhhcccCChhhCc------HHHHHHHHHHHhhccccchHHHHHHhhccccccchhHHHHHH
Confidence 4678889999999999999999888542 222 2455555544
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 216 YEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 216 YeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
|.|.|...+||.|++.|. .++.-+=--++++-.
T Consensus 323 ~~GRGe~~eAinIAr~L~--D~d~~~~Al~k~~ee 355 (434)
T COG4499 323 YSGRGEFKEAINIARNLD--DNDLTLLALTKLYEE 355 (434)
T ss_pred HhcCccHHHHhhHHHhCC--cchhHHHHHHHHHHH
Confidence 568899999999999997 444444333444333
No 289
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=30.99 E-value=1.4e+02 Score=28.51 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCc-------------hHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhhCC
Q 019243 183 MYGRAIEFLEGALTIIPRPTFF-------------GGEIQIWLAMAYEANN-----RHADCIALYKQLESNHP 237 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~~~~~S~l-------------GGEaQmwLatAYeA~G-----q~ekAIALCq~L~~~HP 237 (344)
-|...++-|+.|++.+|..... -+=+...++++|.-.+ +.++|++.|..+. ..+
T Consensus 140 vy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi-~~~ 211 (359)
T cd08977 140 VYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSF-KGG 211 (359)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hcC
Confidence 3677788888888877643221 1234556677788888 8999999999999 443
No 290
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=30.43 E-value=64 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 222 HADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 222 ~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
++.||.+++.+..+-.||+||.+|.++..-=
T Consensus 12 H~~Ai~ma~~~~~~~~~p~vr~lA~~I~~~Q 42 (151)
T PF03713_consen 12 HQQAIEMAELALKRGTDPEVRALAQQIIAAQ 42 (151)
T ss_dssp HHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6789999999985556999999999887543
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.37 E-value=5.5e+02 Score=29.69 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 019243 102 EKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161 (344)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~e~ 161 (344)
|...|.--.-|-+|++-|.-++-..+--+-+ ---|.-++-..-.+||+-|+..
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-------~~~ecly~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-------NQIECLYRLELFGELEVLARTL 848 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchH-------hHHHHHHHHHhhhhHHHHHHhc
Confidence 3444444455666666665444322211111 1223445555555666665543
No 292
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=30.10 E-value=17 Score=38.16 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~-~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
-+++...|.++.++++.|++.+|..+|..+.. ..+. ..-.+.++..|..+...|+.++|+.....+
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~--~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSP--SQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCCh--HHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 45567889999999999999999999998652 2232 333467788888888899999999987743
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.77 E-value=1.1e+02 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTI 197 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~ 197 (344)
.|..+.+-++-|+|..|.++|+.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 467889999999999999999999963
No 294
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.66 E-value=78 Score=34.23 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 019243 321 KNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 321 ~N~fiwvAl~~~~vLlG~tl~L 342 (344)
-+..+|+.++++++.+|+.+|+
T Consensus 322 ~~~~~~~~~l~~~~~~g~~~~~ 343 (656)
T PRK06975 322 GSAALWFVVVVLACAAAVGGYA 343 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988887765
No 295
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=29.62 E-value=61 Score=23.32 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=15.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 019243 320 EKNRAFWVGLTLWFGLVGAAIF 341 (344)
Q Consensus 320 ~~N~fiwvAl~~~~vLlG~tl~ 341 (344)
.+|+...++++++++++.++++
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHH
Confidence 4677777777777776666654
No 296
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.53 E-value=68 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 019243 323 RAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 323 ~fiwvAl~~~~vLlG~tl~L 342 (344)
.|+|.+.++.++++++++++
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888888877777776653
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=29.51 E-value=4.2e+02 Score=23.79 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHH--HHHHHHcCChHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWL--AMAYEANNRHADCIALYK 230 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwL--atAYeA~Gq~ekAIALCq 230 (344)
++.....+.|.-.++.|++..|++.+..+... .+..|-.+.|+| +...--.|+.........
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44556778899999999999999999996664 334455555554 444445566555544433
No 298
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=28.88 E-value=74 Score=26.20 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcCCC
Q 019243 182 GMYGRAIEFLEGALTIIPRPTFFGGEI-QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPK 256 (344)
Q Consensus 182 G~Y~qAIelLE~a~~~~~~~S~lGGEa-QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEAPk 256 (344)
|-..+|-.+|...=..+|. -+. .+..++-|-|.|+..+|+++-... .. .+|..|++++.+|-
T Consensus 8 ~L~~qa~aiLnvlPqLIpD-----~~~r~vC~alllfGLne~~~A~~~La~~----~~----~eA~~Lr~lf~~~~ 70 (75)
T PRK15356 8 SLISQVHAMLPALTVIVPD-----KKLQLVCLALLLAGLNEPLKAAKILSDI----DL----PEAMALRLLFPAPN 70 (75)
T ss_pred chHHHHHHHHHhhhhhcCC-----HHHHHHHHHHHHHhcCcHHHHHHHHhcC----Cc----HHHHHHHHHhcCCc
Confidence 3445666666655555554 233 356789999999999999875443 33 47899999999974
No 299
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.52 E-value=3.6e+02 Score=29.38 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK 246 (344)
..+..|+.-=+=++|.+|.+.+|+.+.- ...-++.-.++.+|||.=+-..++.++|-.-|-... +. ....+.|+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~--~~-~~e~eeak 544 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL--KG-ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh--cC-CchHHHHH
Confidence 3556666666778999999999998873 334455567999999999999999999988777776 33 56677788
Q ss_pred HHHhhh
Q 019243 247 DLRYIL 252 (344)
Q Consensus 247 ~LLyIL 252 (344)
.|+-.+
T Consensus 545 ~LlRei 550 (559)
T KOG1155|consen 545 ALLREI 550 (559)
T ss_pred HHHHHH
Confidence 876543
No 300
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=28.30 E-value=63 Score=28.67 Aligned_cols=35 Identities=20% Similarity=0.548 Sum_probs=21.8
Q ss_pred CccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 019243 305 DFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIF 341 (344)
Q Consensus 305 ep~~D~s~w~PPvgt~~N~fiwvAl~~~~vLlG~tl~ 341 (344)
.| +|+--.+||++. .|-++|++=++++++.|+++|
T Consensus 86 RY-G~~Vl~~Pp~~~-~t~~LW~~P~~lll~g~~~~~ 120 (126)
T PRK10144 86 RY-GDFVRYNPPLTG-QTLVLWALPVVLLLLMALILW 120 (126)
T ss_pred hc-CCeEEecCCCCc-chHHHHHHHHHHHHHHHHHHH
Confidence 34 677777899865 457788875554444444444
No 301
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.04 E-value=3.8e+02 Score=22.80 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019243 151 RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (344)
Q Consensus 151 ~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~ 198 (344)
.+++.+..++...-...++..++.-...+-..-+...-..++.++...
T Consensus 82 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~~ 129 (158)
T PF03938_consen 82 QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKEN 129 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555444444555555555555555555555555555555443
No 302
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=27.70 E-value=61 Score=24.92 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=22.4
Q ss_pred CccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 019243 305 DFLGDFLVWRPPVGLEKNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 305 ep~~D~s~w~PPvgt~~N~fiwvAl~~~~vLlG~tl~L 342 (344)
++..|+.+ .+|. ++|-+++++.++++++++++
T Consensus 20 ~~e~Df~~----~~p~--~~Ii~gii~~~~fV~~Lv~l 51 (56)
T PF11174_consen 20 NRERDFAQ----GSPV--HFIIVGIILAALFVAGLVLL 51 (56)
T ss_pred hHHHHHHc----CCCc--hHHHHHHHHHHHHHHHHHHH
Confidence 44467776 3333 38888888888888888765
No 303
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=27.62 E-value=2.5e+02 Score=23.58 Aligned_cols=74 Identities=26% Similarity=0.417 Sum_probs=38.6
Q ss_pred cCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHHH--HHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHHHHHH
Q 019243 79 DFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEIE--EMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRE 153 (344)
Q Consensus 79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rv~~~ 153 (344)
||..-+.+|= --|--.+.+..|+..||++|++..- +.++.-++..+ .+..++.=. .+.-.+++.-|+..
T Consensus 2 DFsk~sn~EL~kmaG~v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms------~~e~~k~~~ev~k~ 75 (93)
T PF06518_consen 2 DFSKKSNEELIKMAGKVDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMS------VEERKKRREEVRKA 75 (93)
T ss_dssp SSTTS-HHHHHHTTTTS-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-------HHHHHHHHHHHHHH
T ss_pred cchhcChHHHHHHHCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHH
Confidence 5544333332 2355567788999999999998543 34444444333 444444333 23334555556666
Q ss_pred HHHHH
Q 019243 154 LEKVA 158 (344)
Q Consensus 154 le~~a 158 (344)
++++.
T Consensus 76 ~~~~~ 80 (93)
T PF06518_consen 76 LEKRI 80 (93)
T ss_dssp HHHT-
T ss_pred HHHHH
Confidence 65543
No 304
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.53 E-value=5.1e+02 Score=26.32 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|-..+.|..|.=++|..++.++++. -+++.+|.|.+..|+.++|-.+-+...
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~----~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTP----LLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCCh----HHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 3345679999999999988777654 568999999999999999999998766
No 305
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=27.34 E-value=54 Score=24.65 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=27.5
Q ss_pred CCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhC
Q 019243 201 PTFFGGEIQIWLAMAYEA-NNRHADCIALYKQLESNH 236 (344)
Q Consensus 201 ~S~lGGEaQmwLatAYeA-~Gq~ekAIALCq~L~~~H 236 (344)
++=.|.++=-||.....+ ....++|+.||+.|. .+
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll-~~ 51 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELL-DH 51 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHH-HC
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHH-HC
Confidence 345688888898865544 788999999999998 54
No 306
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.32 E-value=7.4e+02 Score=28.81 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 145 EKRMRVRRELEKVAKEQAERRATAQLMFE 173 (344)
Q Consensus 145 ~~~~rv~~~le~~a~e~a~~~e~a~~~le 173 (344)
.-+.+...+|+|..+|..+++......++
T Consensus 666 ~i~~~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 666 QIKARQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455667778888887777766544443
No 307
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.23 E-value=5.6e+02 Score=24.51 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 148 MRVRRELEKVAKEQAERR-----ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 148 ~rv~~~le~~a~e~a~~~-----e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
.+.++++-..|++.+.+. +..+..-+.....+.+.-...|++.-+.++.
T Consensus 85 ~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~ 138 (250)
T PRK14474 85 DEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALA 138 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444443 2233334445555555555666666666555
No 308
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.11 E-value=1.7e+02 Score=30.28 Aligned_cols=60 Identities=20% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHH--cCChHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-FFGGEIQIWLAMAYEA--NNRHADCIALYK 230 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S-~lGGEaQmwLatAYeA--~Gq~ekAIALCq 230 (344)
....+..+|.+++|+.|.++|+.++......+ .-.-+.-..|+.||.. .-++++|+..-.
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34456789999999999999999997533211 1112344567777776 556777766544
No 309
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.52 E-value=5.1e+02 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~ 199 (344)
..|+.-.+...+++|++++..|+..+..++
T Consensus 134 ~~vesL~~l~~kr~y~e~a~~lqai~~ll~ 163 (793)
T KOG2180|consen 134 TGVESLNALLSKRSYGEAASPLQAILQLLN 163 (793)
T ss_pred HHHHHHHHHHhhccHHHHHhHHHHHHHHHH
Confidence 445555667889999999999998887554
No 310
>PRK11906 transcriptional regulator; Provisional
Probab=26.24 E-value=5.8e+02 Score=27.25 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ-LESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~-L~~~HPd 238 (344)
++..+-.|..-.-.|+|..|+.+|+.+....|. ...+-.+.+...--+|+.++|+..-+. |. -+|.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-LsP~ 404 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARICIDKSLQ-LEPR 404 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCch
Confidence 445667777777778899999999998886554 345666666666778999999998888 65 6664
No 311
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=26.24 E-value=1.1e+02 Score=34.95 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
=+||-+||-.++ +++---+..+||+.+|...|=...|-.+|.+|-
T Consensus 456 ~eaI~LLE~glt----~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 456 FEAITLLENGLT----KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHHHHhh----cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 456777777776 455556999999999999999999999998874
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=4.4e+02 Score=29.04 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHH---HHHhhCCCHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYK---QLESNHPSKNI 241 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq---~L~~~HPd~qV 241 (344)
.+...|-.|.-||.+++|.+|-.+|-..+...+ ..-++.+.--..|-......|++.++....+ +|.++.||--|
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 345678889999999999999999999887554 3346667777788888899999999877654 67778999999
Q ss_pred HHHHHHHHhh
Q 019243 242 RRQAADLRYI 251 (344)
Q Consensus 242 RqQAK~LLyI 251 (344)
+=|.-.++.-
T Consensus 524 qLws~si~~~ 533 (629)
T KOG2300|consen 524 QLWSSSILTD 533 (629)
T ss_pred HHHHHHHHHH
Confidence 9998776653
No 313
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.13 E-value=2.7e+02 Score=27.54 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|--.+.+|+|.+|.++|+.|+....-.++. -.---++.|-...|+.+.|...++.=.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s--~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPS--DTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcc--hhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 556789999999999999998744332222 233445667778899999998887655
No 314
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.97 E-value=1.1e+02 Score=29.29 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 172 FELGQKAYGKGM----YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 172 leaG~aALerG~----Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
+..=...|.+.. +-.+|.+|+.+..........-.+-+.-.-.-+..-|..++...--+.|. .|||++||.|.
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~-~h~d~ev~~~v 253 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALA-NHPDPEVKEQV 253 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHH-cCCCHHHhhhc
Confidence 333344455443 77788999987664443322222222222222223344455555556788 89999999873
No 315
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=25.63 E-value=48 Score=24.74 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhhhcC
Q 019243 236 HPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 236 HPd~qVRqQAK~LLyILEA 254 (344)
-|.| |+|+||++|.||+-
T Consensus 7 LP~P-iqQsAkqmlnILQE 24 (44)
T PF13080_consen 7 LPTP-IQQSAKQMLNILQE 24 (44)
T ss_pred cCch-HHHHHHHHHHHHHH
Confidence 4444 89999999999974
No 316
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.33 E-value=73 Score=24.96 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=11.7
Q ss_pred CCCCCcchhHHHHHHH-HHHHHHHHHHh
Q 019243 316 PVGLEKNRAFWVGLTL-WFGLVGAAIFL 342 (344)
Q Consensus 316 Pvgt~~N~fiwvAl~~-~~vLlG~tl~L 342 (344)
|+.|++ .+.+++++ +++++|+.+.|
T Consensus 53 P~~P~~--~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 53 PVSPKR--ALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CCCCcH--HHHHHHHHHHHHHHHHHHHH
Confidence 455555 33334333 44445555444
No 317
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.22 E-value=2.3e+02 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
-.|..-.+.|++.+|+++++.||..-+-+. -.+.-.+..+-+.|+.++|+..-.+|..--|+..
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 347788899999999999999998655432 3566777888999999999999999985555543
No 318
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=3.9e+02 Score=30.92 Aligned_cols=15 Identities=0% Similarity=0.235 Sum_probs=7.5
Q ss_pred EEeeccccccccccc
Q 019243 65 VVTRGKVNSKVNAVD 79 (344)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (344)
.+-++++-+..||+-
T Consensus 279 ~~r~~rs~~sis~~~ 293 (1118)
T KOG1029|consen 279 SFRSSRSANSISGLE 293 (1118)
T ss_pred ccccccCCCCccccc
Confidence 344555555555544
No 319
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=25.06 E-value=2.4e+02 Score=30.70 Aligned_cols=56 Identities=25% Similarity=0.136 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIAL 228 (344)
....|.-|=+.|+.++||+++...+...|..+-+| |+-.|+-||--.++..++-+|
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQAL 317 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHH
Confidence 34567777889999999999999998888766664 888889998888888887655
No 320
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=25.04 E-value=2.4e+02 Score=26.30 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHHHHHHcCChHHHHH-HHHHHHhhCCCHHHHHHH---HHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRP-TFFGGEIQIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQA---ADL 248 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~-S~lGGEaQmwLatAYeA~Gq~ekAIA-LCq~L~~~HPd~qVRqQA---K~L 248 (344)
.|.++-+-|+.+.||+.|-+++..+|.+ |...-. +.||.-+|+.++|+. |-+.|.-..|-....-|| +-+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNR-----AQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNR-----AQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccH-----HHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4677778999999999999999999754 444444 458899999999985 445554223333333333 235
Q ss_pred Hhhhc
Q 019243 249 RYILQ 253 (344)
Q Consensus 249 LyILE 253 (344)
||-|.
T Consensus 124 lyRl~ 128 (175)
T KOG4555|consen 124 LYRLL 128 (175)
T ss_pred HHHHh
Confidence 66553
No 321
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.97 E-value=79 Score=23.99 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019243 324 AFWVGLTLWFGLVGAAIF 341 (344)
Q Consensus 324 fiwvAl~~~~vLlG~tl~ 341 (344)
|+-|.+++++++||++++
T Consensus 4 ~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455667777777777765
No 322
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.90 E-value=1.7e+02 Score=27.62 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHH-HHHHHHHHcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRPTFFGGEIQI-WLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~lGGEaQm-wLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|.+|+++.+. ..++.+|+...+-+ +-|--|+-.|+.++||.|+++--
T Consensus 149 Y~~A~~~a~~---~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 149 YEEALEIAKK---ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHH---HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred hhhHHHHHhc---ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4444444333 36777776544444 33556688999999999999764
No 323
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.81 E-value=6.2e+02 Score=26.14 Aligned_cols=70 Identities=10% Similarity=-0.163 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
.+-.++..++=..+++.|-.++...+. .++-..+.|+-..|..+-.-.|+..|. |+++.||.-+-.++..
T Consensus 74 ~aa~al~~~~~~~~~~~L~~~L~d~~~------~vr~aaa~ALg~i~~~~a~~~L~~~L~--~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 74 CAALALLAQEDALDLRSVLAVLQAGPE------GLCAGIQAALGWLGGRQAEPWLEPLLA--ASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHhccCChHHHHHHHHHhcCCCH------HHHHHHHHHHhcCCchHHHHHHHHHhc--CCChHHHHHHHHHHHh
Confidence 344455544444445555444443222 367777777766666655555555554 7788888766666655
No 324
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.81 E-value=4.5e+02 Score=28.70 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 019243 148 MRVRRELEKVAKEQ 161 (344)
Q Consensus 148 ~rv~~~le~~a~e~ 161 (344)
.|.|.+.|+++++.
T Consensus 23 ~~~~~~~~~~~~~~ 36 (567)
T PLN03086 23 AKLKLERERKAKEE 36 (567)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 325
>PRK11637 AmiB activator; Provisional
Probab=24.34 E-value=7.5e+02 Score=25.00 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.6
Q ss_pred HHHHHhcCCH
Q 019243 175 GQKAYGKGMY 184 (344)
Q Consensus 175 G~aALerG~Y 184 (344)
...+|..|+.
T Consensus 130 lra~Y~~g~~ 139 (428)
T PRK11637 130 LDAAFRQGEH 139 (428)
T ss_pred HHHHHHcCCC
Confidence 3444455543
No 326
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.25 E-value=1.5e+02 Score=25.37 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 189 EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 189 elLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
++++.|+.......-.+.-.+|.=..--...|-.+-+.+|-+.|. |++|.+.-.|=.||..+
T Consensus 8 ~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~--~~~~~vq~~aL~lld~l 69 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLK--HGNPNVQLLALTLLDAL 69 (140)
T ss_dssp HHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 355565554433333333333322222223334555666777776 78888888885555444
No 327
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.96 E-value=94 Score=36.66 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~----~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
..++..++.|+.++.+|..+.|.+ +-..+..+. .-.+.-++.-+.|++-|...|..++||+.|+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 346789999999999999998888 333333222 22345578889999999999999999999975
No 328
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.73 E-value=2.1e+02 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=20.7
Q ss_pred HcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 218 ANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 218 A~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
..|-.+-+.+|-+.|. |++|.++-.|=.||..
T Consensus 32 ~~~~k~a~raL~krl~--~~n~~vql~AL~lLd~ 63 (133)
T cd03561 32 PNGPKEAARAIRKKIK--YGNPHVQLLALTLLEL 63 (133)
T ss_pred CCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 3455566667777765 7888888877444443
No 329
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.70 E-value=2.3e+02 Score=31.09 Aligned_cols=54 Identities=26% Similarity=0.530 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHH
Q 019243 100 DWEKEMRRRVKEI-----EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRREL 154 (344)
Q Consensus 100 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~l 154 (344)
+-+.|.+.|++.+ .+..-|++++.+|..++. +-..++++.+|.++++.+++...
T Consensus 217 ~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~ 275 (581)
T KOG0995|consen 217 ELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDV 275 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHH
Confidence 5677778887654 346667777777777776 44456678999999988777544
No 330
>PHA00727 hypothetical protein
Probab=23.61 E-value=4.2e+02 Score=25.96 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 019243 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDD 133 (344)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (344)
.--||.|+|+ .+-.+||..+-||.|.++.+..
T Consensus 7 vs~~eeelrk----aqsleelkqkyee~qkqi~dgk 38 (278)
T PHA00727 7 VSAWEEELRK----AQSLEELKQKYEEAQKQIADGK 38 (278)
T ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHHHhhccH
Confidence 4469988765 5667788899999999998654
No 331
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=23.58 E-value=27 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 019243 315 PPVGLEKNRAFWVGLTLWFGLVGAAIFL 342 (344)
Q Consensus 315 PPvgt~~N~fiwvAl~~~~vLlG~tl~L 342 (344)
|-+|...|.++ .+++++++++++++++
T Consensus 10 P~TG~~~~~~~-~~~G~l~~~~~~~~~~ 36 (39)
T PF00746_consen 10 PKTGENSNSIL-TILGALLLLGGGLLLV 36 (39)
T ss_dssp ----------------------------
T ss_pred CCCCcccCHHH-HHHHHHHHHHHHHHhe
Confidence 55785555543 3334444444444443
No 332
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=23.49 E-value=6.2e+02 Score=24.23 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHh-hCCCCCCchHHHHH
Q 019243 142 TEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGK----------GMYGRAIEFLEGALT-IIPRPTFFGGEIQI 210 (344)
Q Consensus 142 ~~~~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aALer----------G~Y~qAIelLE~a~~-~~~~~S~lGGEaQm 210 (344)
-|.++.+++++.|++.-+++..+-+ .|+...+-|+. -+|..|++-.|.-.. ..-.+.=.+.+.||
T Consensus 80 ~e~~k~~~LAr~le~~~q~L~k~da----f~Ke~larlEen~~e~ykv~~eqy~~aaE~VekrFk~~~~~pvCqdlq~qi 155 (192)
T KOG4083|consen 80 EEGEKAARLARDLEEKSQELKKQDA----FYKEQLARLEENSSEFYKVTTEQYQKAAERVEKRFKAYHREPVCQDLQAQI 155 (192)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcccccHHHH
Confidence 4567889999999999987765443 34444444444 458888887776553 22233344556655
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHhhC
Q 019243 211 WLAMAYEAN-NRHADCIALYKQLESNH 236 (344)
Q Consensus 211 wLatAYeA~-Gq~ekAIALCq~L~~~H 236 (344)
..||..+ |++-+|+.|..... +|
T Consensus 156 --l~Cyr~~p~e~LkC~~lv~af~-~C 179 (192)
T KOG4083|consen 156 --LRCYRENPGEVLKCSPLVAAFM-KC 179 (192)
T ss_pred --HHHHhcCCCccccccHHHHHHH-HH
Confidence 4667654 77778877777665 55
No 333
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=7.6e+02 Score=26.50 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK 246 (344)
.+..+..+--.|-|--|++||+....++. .++...-+-..||.||....=.+=+-.+-+--..+|||.-|...-+
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 34556667778889999999999999887 5566777888999999998877777666554444999998876544
No 334
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.45 E-value=93 Score=29.26 Aligned_cols=18 Identities=44% Similarity=0.724 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 019243 326 WVGLTLWFGLVGAAIFLQ 343 (344)
Q Consensus 326 wvAl~~~~vLlG~tl~L~ 343 (344)
||.|++|+||.+++++|+
T Consensus 107 ~v~vllW~vL~~ia~~l~ 124 (181)
T KOG3249|consen 107 WVIVLLWFVLAPIAHRLD 124 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999999875
No 335
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=23.44 E-value=1.1e+02 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.4
Q ss_pred HHHHhhC-CCHHHHHHHHHHHhhhc
Q 019243 230 KQLESNH-PSKNIRRQAADLRYILQ 253 (344)
Q Consensus 230 q~L~~~H-Pd~qVRqQAK~LLyILE 253 (344)
..|. +| ++++|++.|+.|+.-+.
T Consensus 26 ~~l~-k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 26 NKLR-KHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHH-HCTS-HHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCHHHHHHHHHHHHHHh
Confidence 3566 67 99999999999987653
No 336
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=23.40 E-value=1.1e+02 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEG 193 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~ 193 (344)
+..++.+...+++|+|..|+++|+.
T Consensus 71 ~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 71 ELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4577889999999999999999984
No 337
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.29 E-value=7.2e+02 Score=24.65 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhh
Q 019243 183 MYGRAIEFLEGALTI 197 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~ 197 (344)
+|..+...|+..-..
T Consensus 121 q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 121 QYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHhc
Confidence 455666666665443
No 338
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.80 E-value=7e+02 Score=27.88 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=6.0
Q ss_pred cccccccCCCCC
Q 019243 261 QEEMVTIPLIGS 272 (344)
Q Consensus 261 ~ew~veIPdL~~ 272 (344)
..-.|.|+.++.
T Consensus 627 ~Gd~V~v~~~~~ 638 (771)
T TIGR01069 627 IGDKVRIRYFGQ 638 (771)
T ss_pred CCCEEEEccCCc
Confidence 344455555543
No 339
>PRK11906 transcriptional regulator; Provisional
Probab=22.71 E-value=2.1e+02 Score=30.41 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|..-|-.|...+=.|+..+|+++++.++...|..-.. +-+++|+-|-| ....++||+||-+=+
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA-VVIKECVDMYV--PNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH-HHHHHHHHHHc--CCchhhhHHHHhhcc
Confidence 5567778888889999999999999999988874333 45677765544 467899999997655
No 340
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.57 E-value=1.8e+02 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
..|...+..|..+=..|+|.+|+.+...+++
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777778888888888777766
No 341
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=22.53 E-value=5.2e+02 Score=22.48 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 019243 152 RELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (344)
Q Consensus 152 ~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq 221 (344)
.+++..+.+.=.---.|+..+-.++.+.++|+|.+|-++|+.+-+.. ..+-++|.-|+.. ++.|.
T Consensus 15 e~~e~~~~~II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l----~~AH~~qt~Liq~-Ea~Ge 79 (115)
T PRK10454 15 EELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL----NEAHLVQTKLIEG-DQGEG 79 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HhcCC
Confidence 44677777655555678899999999999999999999999987633 2344666666643 33443
No 342
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=22.51 E-value=3.6e+02 Score=28.54 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=11.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 019243 211 WLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 211 wLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.|..||...|+.+.|..+++.|.
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHh
Confidence 34445555555555555555544
No 343
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=22.21 E-value=48 Score=32.87 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred HHHHhcCCHHHHHHH-------HHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhh--CCCH
Q 019243 176 QKAYGKGMYGRAIEF-------LEGALTIIPRPTFFGGEIQIWLAMAYEANNR-------HADCIALYKQLESN--HPSK 239 (344)
Q Consensus 176 ~aALerG~Y~qAIel-------LE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-------~ekAIALCq~L~~~--HPd~ 239 (344)
-.+.-=|+|+..+.. +..++.... ....++|.++.+|...... .+.=+.+...+. + ++|+
T Consensus 434 ~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~---~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~-~~~s~~~ 509 (526)
T PF01602_consen 434 AAIWILGEYGELIENTESAPDILRSLIENFI---EESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLA-TEDSSDP 509 (526)
T ss_dssp HHHHHHHHHCHHHTTTTHHHHHHHHHHHHHT---TSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHH-HHS-SSH
T ss_pred HHHhhhcccCCcccccccHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHh-ccCCCCH
Confidence 344455667666643 444443322 2345677777776654332 135566667777 6 8899
Q ss_pred HHHHHHHHHHhhhc
Q 019243 240 NIRRQAADLRYILQ 253 (344)
Q Consensus 240 qVRqQAK~LLyILE 253 (344)
+||++|..++.+|+
T Consensus 510 evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 510 EVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999985
No 344
>PRK00068 hypothetical protein; Validated
Probab=21.95 E-value=1.5e+02 Score=34.12 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC
Q 019243 165 RATAQLMFELGQKAYGKGM---YGRAIEFLEGALTII 198 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~---Y~qAIelLE~a~~~~ 198 (344)
.+.|+..|+.+++|+++|+ |+++++-|+.+++..
T Consensus 930 l~~a~~a~~~a~~Alk~GDw~~yG~a~~~L~~al~~~ 966 (970)
T PRK00068 930 LKEAQDAYNKAIEAQKSGDFAEYGEALKELDDALNKY 966 (970)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999996 789999999988754
No 345
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=21.81 E-value=1e+02 Score=25.24 Aligned_cols=18 Identities=28% Similarity=0.023 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHHHHHH
Q 019243 320 EKNRAFWVGLTLWFGLVG 337 (344)
Q Consensus 320 ~~N~fiwvAl~~~~vLlG 337 (344)
-+|+.+|+|++..++++.
T Consensus 7 ~kNk~fw~ali~al~l~~ 24 (78)
T TIGR01598 7 LKNKATLIALLGALFLAI 24 (78)
T ss_pred ecCHHHHHHHHHHHHHHH
Confidence 368899999888777763
No 346
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.79 E-value=95 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 019243 323 RAFWVGLTLWFGLVGAAIF 341 (344)
Q Consensus 323 ~fiwvAl~~~~vLlG~tl~ 341 (344)
+.+.|++.++++|+|+|.|
T Consensus 6 ~A~~~~i~i~~lL~~~Tgy 24 (46)
T PRK13183 6 PALSLAITILAILLALTGF 24 (46)
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 4678889999999998876
No 347
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=21.58 E-value=4.7e+02 Score=21.90 Aligned_cols=48 Identities=23% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYe 217 (344)
-.|+..+-.++.+.+.|+|.+|-++|+.+-+... .+-++|.-|...-.
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~----~AH~~qt~liq~ea 60 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEANDSLN----EAHHAQTKLLQQEA 60 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 4578889999999999999999999999776332 23456665555443
No 348
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.49 E-value=5.7e+02 Score=22.54 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 186 qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
..+++.+.++...|. ..+=.-++.++..+|+.++|..+-++...-+|..+.++|.
T Consensus 129 ~~~~~a~~~l~~~P~-----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD-----PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 344455555544442 3444556899999999999999999988788866666665
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.39 E-value=5.1e+02 Score=26.05 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG 206 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG 206 (344)
+.-....+.-.+..-+||.|+.|.++..-.+..-|.+.|.|.
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 344556777788888899999999888888888887788876
No 350
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.03 E-value=4.4e+02 Score=21.08 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 019243 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192 (344)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE 192 (344)
++++.|...+++|-+.+.+.. .+.-.+-|+++...+ .....+... ..+. -+.++++++...+
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~------~~~~~~~r~~~~~~~----~~a~~~~~~---~~~~-----~~~~~~~~~~~~~ 66 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLA------GEKADEARDRAEEAL----DDARDRAED---AADQ-----AREQAREAAEQTE 66 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHH----HHHHHHHHH---HHHH-----HHHHHHHHHHHHH
Confidence 456777777777777666655 223333444444333 322222222 1111 1234678889999
Q ss_pred HHHhhCCCCCCchHHHHHHHHH
Q 019243 193 GALTIIPRPTFFGGEIQIWLAM 214 (344)
Q Consensus 193 ~a~~~~~~~S~lGGEaQmwLat 214 (344)
.++...|..+ +|.=+-+.++.
T Consensus 67 ~~V~e~P~~s-vgiAagvG~ll 87 (94)
T PF05957_consen 67 DYVRENPWQS-VGIAAGVGFLL 87 (94)
T ss_pred HHHHHChHHH-HHHHHHHHHHH
Confidence 9999888643 33333344333
No 351
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=21.01 E-value=1.4e+02 Score=34.17 Aligned_cols=59 Identities=10% Similarity=-0.050 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
...+....+...|+|.+|+++++.+++. .|....+.+.++..|...++..+|..+ +-|.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~ 91 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSRRPLNDSNLL-NLID 91 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhhcchhhhhhh-hhhh
Confidence 3444455555666666666666665552 233445556666666666666666666 4443
No 352
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=20.96 E-value=1.5e+02 Score=24.63 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
+++.|...++.|..-|++|++++|=+-+=.|+.
T Consensus 2 rl~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~ 34 (115)
T PF05942_consen 2 RLEEAEKELEEADELLEKGDLRQAAEKAFKAVE 34 (115)
T ss_dssp --BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677889999999999999998776655554
No 353
>PF05235 CHAD: CHAD domain; InterPro: IPR007899 The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family IPR008172 from INTERPRO. It has conserved histidines that may chelate metals [].; PDB: 3E0S_B.
Probab=20.91 E-value=6.1e+02 Score=22.70 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (344)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aAL 179 (344)
.|..+++.=.+.+-..|++.--.+.+...+.+. .....+.+.|+.... ...+....++
T Consensus 54 ~l~~~lk~l~~~lg~~RD~dV~~~~l~~~~~~~------------~~~~~l~~~l~~~r~----------~~~~~~~~~l 111 (231)
T PF05235_consen 54 KLRRELKWLARALGPLRDLDVLLETLDPPLAEA------------PALAALLERLEARRA----------RAREKLLEAL 111 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-TTTCG-------------GGHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHH----------HHHHHHHHHh
Confidence 566666666666677777777777766333322 112233333333221 2244446778
Q ss_pred hcCCHHHHHHHHHHHHhhCCC--------CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CHHHHHHHHH
Q 019243 180 GKGMYGRAIEFLEGALTIIPR--------PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRRQAAD 247 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~--------~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP----d~qVRqQAK~ 247 (344)
....|...+..|...+...+. ..++..-+.-.+...|...- .....+. ..| --++|+.+|+
T Consensus 112 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~-~~~~~~~lH~lR~~~K~ 184 (231)
T PF05235_consen 112 RSARYRRLLLELEAWLAAPPWLTPAEEEASEPLRKFARRRLRRRYRKLR------KALRALD-REPDDEELHRLRKAAKR 184 (231)
T ss_dssp TSHHHHHHHHHHHHHHT--S---TTSTTTTSBHHHHHHHHHHHHHHHHH------HHH---------THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCccccccccccccccHHHHHHHHHHHHHHHHH------HHHHHhh-hcCChHHHHHHHHHHHH
Confidence 888899989888887743322 22223333444444443321 1111111 011 2379999999
Q ss_pred HHhhhcC
Q 019243 248 LRYILQA 254 (344)
Q Consensus 248 LLyILEA 254 (344)
+.|.+|.
T Consensus 185 lRY~~e~ 191 (231)
T PF05235_consen 185 LRYALEF 191 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.73 E-value=6.1e+02 Score=26.31 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.......+..+++.|.|.+||++...+++..|.+ -+.--.|...|+..|+.=.||.=|..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~----e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS----EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4456777889999999999999999999876654 3555667778888999877777666554
No 355
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.56 E-value=7.2e+02 Score=23.38 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019243 149 RVRRELEKVAKEQAER 164 (344)
Q Consensus 149 rv~~~le~~a~e~a~~ 164 (344)
+.++++-..|++++++
T Consensus 86 ~~~~~i~~~A~~ea~~ 101 (246)
T TIGR03321 86 AERQRLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 356
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.42 E-value=1.2e+02 Score=21.95 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 019243 325 FWVGLTLWFGLVGAAIFLQ 343 (344)
Q Consensus 325 iwvAl~~~~vLlG~tl~L~ 343 (344)
.++.+++.++++|+.+|..
T Consensus 12 ~~~~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888864
No 357
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.07 E-value=5.6e+02 Score=28.01 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.2
Q ss_pred HHhhhcC
Q 019243 248 LRYILQA 254 (344)
Q Consensus 248 LLyILEA 254 (344)
|++-|..
T Consensus 115 m~F~l~~ 121 (567)
T PLN03086 115 LYFRLSV 121 (567)
T ss_pred eEEEEec
Confidence 3444444
Done!