Query 019243
Match_columns 344
No_of_seqs 97 out of 103
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.4 3.5E-06 1.2E-10 69.8 12.4 82 168-253 70-151 (151)
2 2xev_A YBGF; tetratricopeptide 98.4 5.7E-06 2E-10 61.7 12.3 85 169-254 40-124 (129)
3 2l6j_A TPR repeat-containing p 98.2 5.3E-05 1.8E-09 54.7 13.0 68 168-239 4-71 (111)
4 2yhc_A BAMD, UPF0169 lipoprote 98.2 1.3E-05 4.5E-10 67.4 10.9 73 168-241 4-76 (225)
5 2xev_A YBGF; tetratricopeptide 98.1 2.5E-05 8.7E-10 58.1 10.7 69 170-239 4-72 (129)
6 3qky_A Outer membrane assembly 98.0 4.6E-05 1.6E-09 64.4 11.3 72 167-239 14-85 (261)
7 2v5f_A Prolyl 4-hydroxylase su 98.0 6.6E-05 2.3E-09 57.7 10.9 75 168-242 5-82 (104)
8 3qky_A Outer membrane assembly 98.0 7.6E-05 2.6E-09 63.1 12.0 84 168-252 148-241 (261)
9 1elr_A TPR2A-domain of HOP; HO 98.0 6.9E-05 2.3E-09 54.4 10.1 86 168-253 38-126 (131)
10 3upv_A Heat shock protein STI1 98.0 7.1E-05 2.4E-09 56.4 10.5 67 168-238 4-70 (126)
11 4gco_A Protein STI-1; structur 97.9 9.4E-05 3.2E-09 58.1 10.5 67 168-238 13-79 (126)
12 3ma5_A Tetratricopeptide repea 97.9 5E-05 1.7E-09 56.8 8.4 80 169-252 8-90 (100)
13 3k9i_A BH0479 protein; putativ 97.9 0.00012 4.1E-09 55.4 10.6 82 168-253 27-109 (117)
14 2vgx_A Chaperone SYCD; alterna 97.9 0.00016 5.5E-09 58.1 11.4 83 168-254 55-141 (148)
15 2kc7_A BFR218_protein; tetratr 97.9 9E-05 3.1E-09 53.6 8.8 65 171-239 3-68 (99)
16 3rkv_A Putative peptidylprolyl 97.8 7.2E-05 2.5E-09 59.2 8.8 65 170-238 65-129 (162)
17 2xcb_A PCRH, regulatory protei 97.8 0.00016 5.4E-09 56.5 10.3 82 168-253 52-137 (142)
18 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00017 5.7E-09 57.2 10.5 65 170-238 47-111 (164)
19 4gcn_A Protein STI-1; structur 97.8 0.00016 5.4E-09 56.5 10.2 80 168-247 42-124 (127)
20 1elw_A TPR1-domain of HOP; HOP 97.8 0.00017 5.9E-09 51.4 9.5 67 168-238 4-70 (118)
21 1na3_A Designed protein CTPR2; 97.8 0.00034 1.2E-08 48.9 10.5 68 168-239 9-76 (91)
22 1a17_A Serine/threonine protei 97.7 0.00047 1.6E-08 52.6 11.2 68 168-239 47-114 (166)
23 1hxi_A PEX5, peroxisome target 97.7 0.00023 8E-09 55.3 9.5 60 170-233 53-112 (121)
24 3q49_B STIP1 homology and U bo 97.7 0.00037 1.3E-08 52.2 10.1 65 170-238 11-75 (137)
25 2dba_A Smooth muscle cell asso 97.7 0.00082 2.8E-08 50.3 12.0 67 168-238 65-131 (148)
26 2xcb_A PCRH, regulatory protei 97.7 0.0004 1.4E-08 54.2 10.5 67 168-238 18-84 (142)
27 4gcn_A Protein STI-1; structur 97.7 0.00034 1.2E-08 54.6 9.9 62 168-233 8-69 (127)
28 3urz_A Uncharacterized protein 97.7 0.00017 5.8E-09 60.2 8.6 68 168-239 4-87 (208)
29 4ga2_A E3 SUMO-protein ligase 97.6 0.00043 1.5E-08 55.3 10.5 78 167-248 30-108 (150)
30 1elr_A TPR2A-domain of HOP; HO 97.6 0.00061 2.1E-08 49.4 10.3 67 167-237 3-69 (131)
31 2vyi_A SGTA protein; chaperone 97.6 0.00067 2.3E-08 48.9 10.5 64 170-237 14-77 (131)
32 2kat_A Uncharacterized protein 97.6 0.00029 9.8E-09 52.6 8.7 81 168-252 19-102 (115)
33 4abn_A Tetratricopeptide repea 97.6 0.0015 5.1E-08 62.1 15.6 71 167-241 101-172 (474)
34 2kck_A TPR repeat; tetratricop 97.6 0.00035 1.2E-08 49.5 8.7 68 170-239 42-110 (112)
35 2vgx_A Chaperone SYCD; alterna 97.6 0.00048 1.6E-08 55.3 10.4 68 167-238 20-87 (148)
36 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00068 2.3E-08 55.2 11.3 74 165-238 35-120 (198)
37 2dba_A Smooth muscle cell asso 97.6 0.0013 4.5E-08 49.1 11.9 70 168-238 28-97 (148)
38 2lni_A Stress-induced-phosphop 97.6 0.00044 1.5E-08 50.7 8.9 64 170-237 52-115 (133)
39 3vtx_A MAMA; tetratricopeptide 97.6 0.00042 1.4E-08 54.9 9.2 70 167-240 4-73 (184)
40 2kck_A TPR repeat; tetratricop 97.5 0.00095 3.2E-08 47.2 10.0 64 171-238 9-72 (112)
41 3gyz_A Chaperone protein IPGC; 97.5 0.00043 1.5E-08 57.2 9.4 68 167-238 35-102 (151)
42 3upv_A Heat shock protein STI1 97.5 0.001 3.5E-08 50.0 10.7 65 168-236 38-102 (126)
43 2vyi_A SGTA protein; chaperone 97.5 0.0032 1.1E-07 45.3 12.3 67 168-238 46-112 (131)
44 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.00067 2.3E-08 56.9 9.8 68 170-238 149-216 (225)
45 1hxi_A PEX5, peroxisome target 97.5 0.00041 1.4E-08 53.9 7.9 66 170-239 19-84 (121)
46 1na0_A Designed protein CTPR3; 97.4 0.0018 6E-08 46.3 10.3 63 171-237 46-108 (125)
47 4i17_A Hypothetical protein; T 97.4 0.00084 2.9E-08 55.2 9.4 66 170-238 9-74 (228)
48 3qou_A Protein YBBN; thioredox 97.4 0.00068 2.3E-08 59.8 9.4 70 169-242 118-187 (287)
49 2gw1_A Mitochondrial precursor 97.4 0.00081 2.8E-08 60.4 9.9 70 165-239 3-72 (514)
50 1elw_A TPR1-domain of HOP; HOP 97.4 0.0016 5.6E-08 46.2 9.6 68 168-239 38-105 (118)
51 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0012 4E-08 52.2 9.3 69 166-238 9-77 (164)
52 4gco_A Protein STI-1; structur 97.3 0.003 1E-07 49.4 11.5 68 168-239 47-114 (126)
53 3urz_A Uncharacterized protein 97.3 0.0014 4.9E-08 54.5 10.0 67 170-240 56-122 (208)
54 1na0_A Designed protein CTPR3; 97.3 0.0059 2E-07 43.5 11.8 67 168-238 9-75 (125)
55 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0042 1.4E-07 50.5 12.1 82 168-253 88-170 (198)
56 3vtx_A MAMA; tetratricopeptide 97.3 0.0012 4.2E-08 52.2 8.7 66 168-237 107-172 (184)
57 3q49_B STIP1 homology and U bo 97.3 0.002 7E-08 48.2 9.5 67 168-238 43-109 (137)
58 3ieg_A DNAJ homolog subfamily 97.2 0.003 1E-07 53.3 11.3 67 171-237 237-303 (359)
59 3rkv_A Putative peptidylprolyl 97.2 0.0038 1.3E-07 49.1 11.1 33 168-200 97-129 (162)
60 1a17_A Serine/threonine protei 97.2 0.0029 9.8E-08 48.2 10.1 69 166-238 11-79 (166)
61 2pl2_A Hypothetical conserved 97.2 0.0014 4.9E-08 54.9 9.1 67 169-239 6-72 (217)
62 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0045 1.5E-07 49.8 11.6 74 168-241 71-156 (213)
63 3ieg_A DNAJ homolog subfamily 97.2 0.0022 7.5E-08 54.1 10.0 66 168-237 37-102 (359)
64 3fp2_A TPR repeat-containing p 97.2 0.0013 4.6E-08 59.7 9.0 70 165-238 22-91 (537)
65 2lni_A Stress-induced-phosphop 97.1 0.005 1.7E-07 44.9 10.3 67 168-238 16-82 (133)
66 3ro2_A PINS homolog, G-protein 97.1 0.0046 1.6E-07 51.1 10.7 66 168-233 5-70 (338)
67 2r5s_A Uncharacterized protein 97.1 0.00061 2.1E-08 54.8 5.3 69 170-242 8-76 (176)
68 2vq2_A PILW, putative fimbrial 97.1 0.0051 1.7E-07 48.6 10.5 59 171-233 11-69 (225)
69 2fo7_A Synthetic consensus TPR 97.1 0.0056 1.9E-07 43.8 9.6 64 170-237 71-134 (136)
70 1p5q_A FKBP52, FK506-binding p 97.0 0.003 1E-07 57.4 9.9 67 169-239 197-263 (336)
71 4a1s_A PINS, partner of inscut 97.0 0.0023 7.9E-08 56.4 8.7 68 166-233 46-113 (411)
72 2c2l_A CHIP, carboxy terminus 97.0 0.003 1E-07 55.6 9.4 68 168-239 38-105 (281)
73 3u4t_A TPR repeat-containing p 97.0 0.004 1.4E-07 51.5 9.5 63 171-237 77-139 (272)
74 2pl2_A Hypothetical conserved 97.0 0.0039 1.3E-07 52.3 9.5 68 168-240 118-185 (217)
75 2fo7_A Synthetic consensus TPR 97.0 0.0053 1.8E-07 43.9 8.8 65 170-238 37-101 (136)
76 3uq3_A Heat shock protein STI1 97.0 0.0033 1.1E-07 50.8 8.5 67 166-237 3-69 (258)
77 3as5_A MAMA; tetratricopeptide 97.0 0.0044 1.5E-07 47.2 8.7 59 171-233 113-171 (186)
78 4eqf_A PEX5-related protein; a 96.9 0.0036 1.2E-07 54.6 9.1 67 168-238 99-165 (365)
79 3sf4_A G-protein-signaling mod 96.9 0.0082 2.8E-07 51.9 11.2 65 168-232 9-73 (406)
80 3as5_A MAMA; tetratricopeptide 96.9 0.0039 1.3E-07 47.4 8.2 64 170-237 44-107 (186)
81 4i17_A Hypothetical protein; T 96.9 0.0066 2.2E-07 49.8 10.0 67 170-240 44-110 (228)
82 3uq3_A Heat shock protein STI1 96.9 0.0065 2.2E-07 49.1 9.7 76 168-243 38-116 (258)
83 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.0038 1.3E-07 59.3 9.5 67 169-239 318-384 (457)
84 2hr2_A Hypothetical protein; a 96.9 0.0033 1.1E-07 54.6 8.2 70 166-235 9-86 (159)
85 1ihg_A Cyclophilin 40; ppiase 96.9 0.0022 7.6E-08 59.8 7.6 80 169-252 274-354 (370)
86 1hh8_A P67PHOX, NCF-2, neutrop 96.9 0.0086 2.9E-07 48.1 10.1 66 169-238 38-103 (213)
87 3u4t_A TPR repeat-containing p 96.8 0.0039 1.3E-07 51.5 8.1 68 170-238 39-106 (272)
88 3ro3_A PINS homolog, G-protein 96.8 0.012 4E-07 43.5 9.9 67 167-233 48-116 (164)
89 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.0094 3.2E-07 49.0 10.3 69 168-240 77-145 (275)
90 1ihg_A Cyclophilin 40; ppiase 96.8 0.011 3.9E-07 55.0 12.1 55 168-226 307-361 (370)
91 2vq2_A PILW, putative fimbrial 96.8 0.011 3.6E-07 46.8 10.1 67 170-238 78-145 (225)
92 2ho1_A Type 4 fimbrial biogene 96.8 0.0065 2.2E-07 49.8 9.0 60 170-233 73-132 (252)
93 2y4t_A DNAJ homolog subfamily 96.8 0.009 3.1E-07 53.1 10.5 69 168-240 60-128 (450)
94 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.01 3.4E-07 48.8 9.9 67 168-238 43-109 (275)
95 2y4t_A DNAJ homolog subfamily 96.7 0.006 2.1E-07 54.3 9.2 67 172-238 261-327 (450)
96 3qou_A Protein YBBN; thioredox 96.7 0.0077 2.6E-07 53.0 9.8 73 176-252 193-268 (287)
97 2e2e_A Formate-dependent nitri 96.7 0.01 3.5E-07 46.9 9.5 67 169-239 79-148 (177)
98 2e2e_A Formate-dependent nitri 96.7 0.013 4.3E-07 46.4 10.0 67 169-239 45-114 (177)
99 2ho1_A Type 4 fimbrial biogene 96.7 0.022 7.5E-07 46.6 11.6 65 170-238 143-207 (252)
100 2q7f_A YRRB protein; TPR, prot 96.7 0.0086 2.9E-07 48.3 8.9 65 170-238 127-191 (243)
101 3ro3_A PINS homolog, G-protein 96.7 0.011 3.8E-07 43.6 8.9 66 168-233 89-156 (164)
102 1p5q_A FKBP52, FK506-binding p 96.7 0.029 1E-06 50.8 13.3 62 168-233 230-292 (336)
103 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0036 1.2E-07 57.0 7.1 74 165-238 176-262 (338)
104 1fch_A Peroxisomal targeting s 96.6 0.0088 3E-07 51.5 9.2 66 169-238 99-164 (368)
105 2q7f_A YRRB protein; TPR, prot 96.6 0.016 5.5E-07 46.6 10.1 67 168-238 91-157 (243)
106 2r5s_A Uncharacterized protein 96.6 0.0093 3.2E-07 47.9 8.7 64 168-233 108-171 (176)
107 3gw4_A Uncharacterized protein 96.6 0.02 6.8E-07 45.1 10.2 88 167-254 106-198 (203)
108 3cv0_A Peroxisome targeting si 96.6 0.011 3.9E-07 49.4 9.2 66 169-238 56-121 (327)
109 3edt_B KLC 2, kinesin light ch 96.5 0.026 9E-07 45.8 11.0 67 167-233 126-196 (283)
110 3k9i_A BH0479 protein; putativ 96.5 0.002 7E-08 48.5 3.9 59 180-239 2-60 (117)
111 4eqf_A PEX5-related protein; a 96.5 0.015 5E-07 50.7 9.8 68 168-239 213-280 (365)
112 3hym_B Cell division cycle pro 96.5 0.0078 2.7E-07 50.5 7.5 60 174-237 62-122 (330)
113 4f3v_A ESX-1 secretion system 96.5 0.024 8.1E-07 53.0 11.5 75 169-249 172-247 (282)
114 1fch_A Peroxisomal targeting s 96.4 0.02 6.7E-07 49.3 10.1 67 168-238 217-283 (368)
115 3cv0_A Peroxisome targeting si 96.4 0.024 8.3E-07 47.4 10.1 65 170-238 23-87 (327)
116 3hym_B Cell division cycle pro 96.3 0.02 7E-07 47.9 9.2 70 169-238 194-268 (330)
117 3bee_A Putative YFRE protein; 96.3 0.019 6.4E-07 44.3 8.4 67 168-238 6-75 (93)
118 3gw4_A Uncharacterized protein 96.3 0.028 9.5E-07 44.3 9.5 68 166-233 64-134 (203)
119 1qqe_A Vesicular transport pro 96.3 0.017 5.7E-07 50.6 8.8 81 168-248 158-241 (292)
120 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.04 1.4E-06 52.3 12.1 62 168-233 351-413 (457)
121 3edt_B KLC 2, kinesin light ch 96.2 0.12 4E-06 42.0 13.1 70 166-235 83-156 (283)
122 4gyw_A UDP-N-acetylglucosamine 96.2 0.018 6E-07 59.5 10.1 68 168-239 43-110 (723)
123 2vsy_A XCC0866; transferase, g 96.2 0.02 7E-07 54.5 9.7 68 168-239 57-124 (568)
124 3mkr_A Coatomer subunit epsilo 96.2 0.028 9.6E-07 49.9 10.0 64 169-241 102-165 (291)
125 1w3b_A UDP-N-acetylglucosamine 96.2 0.021 7.2E-07 50.3 9.1 66 169-238 68-133 (388)
126 3n71_A Histone lysine methyltr 96.2 0.042 1.4E-06 54.3 12.1 68 166-233 349-420 (490)
127 3nf1_A KLC 1, kinesin light ch 96.2 0.093 3.2E-06 43.5 12.4 67 167-233 152-222 (311)
128 3nf1_A KLC 1, kinesin light ch 96.1 0.026 8.8E-07 46.9 8.9 67 167-233 26-96 (311)
129 4b4t_Q 26S proteasome regulato 96.1 0.018 6.3E-07 51.2 8.3 65 170-234 6-83 (434)
130 2vsy_A XCC0866; transferase, g 96.1 0.029 9.8E-07 53.5 10.1 68 168-239 91-161 (568)
131 2ifu_A Gamma-SNAP; membrane fu 96.0 0.014 4.8E-07 51.4 7.3 72 168-240 155-228 (307)
132 4ga2_A E3 SUMO-protein ligase 96.0 0.073 2.5E-06 42.3 10.8 77 168-248 65-143 (150)
133 1wao_1 Serine/threonine protei 96.0 0.028 9.4E-07 54.1 9.8 68 168-239 40-107 (477)
134 3n71_A Histone lysine methyltr 96.0 0.033 1.1E-06 55.0 10.6 70 164-233 305-378 (490)
135 2if4_A ATFKBP42; FKBP-like, al 96.0 0.02 6.9E-07 52.1 8.2 65 170-238 232-296 (338)
136 1wao_1 Serine/threonine protei 95.9 0.0038 1.3E-07 60.1 3.2 68 168-239 6-73 (477)
137 3fp2_A TPR repeat-containing p 95.8 0.05 1.7E-06 49.4 10.1 66 169-238 311-376 (537)
138 1ouv_A Conserved hypothetical 95.8 0.12 4E-06 43.5 11.5 70 168-244 38-115 (273)
139 2c2l_A CHIP, carboxy terminus 95.8 0.024 8.1E-07 49.9 7.5 68 168-239 4-71 (281)
140 1qqe_A Vesicular transport pro 95.8 0.035 1.2E-06 48.5 8.5 72 168-239 117-191 (292)
141 4gyw_A UDP-N-acetylglucosamine 95.7 0.042 1.4E-06 56.7 10.1 68 168-239 77-144 (723)
142 1w3b_A UDP-N-acetylglucosamine 95.6 0.064 2.2E-06 47.3 9.8 65 170-238 239-303 (388)
143 4a1s_A PINS, partner of inscut 95.6 0.063 2.2E-06 47.2 9.6 65 169-233 264-330 (411)
144 3ro2_A PINS homolog, G-protein 95.6 0.063 2.1E-06 44.3 9.0 66 168-233 223-290 (338)
145 2gw1_A Mitochondrial precursor 95.6 0.086 2.9E-06 47.3 10.5 74 170-247 414-490 (514)
146 2qfc_A PLCR protein; TPR, HTH, 95.6 0.045 1.5E-06 47.5 8.4 66 168-233 155-223 (293)
147 3sf4_A G-protein-signaling mod 95.5 0.13 4.5E-06 44.3 11.2 66 168-233 267-334 (406)
148 3ffl_A Anaphase-promoting comp 95.5 0.03 1E-06 49.6 7.2 74 168-241 63-157 (167)
149 2pzi_A Probable serine/threoni 95.5 0.034 1.2E-06 55.7 8.3 64 170-238 469-532 (681)
150 2ff4_A Probable regulatory pro 95.4 0.16 5.4E-06 48.2 12.3 75 173-251 176-257 (388)
151 2xpi_A Anaphase-promoting comp 95.3 0.08 2.8E-06 49.1 9.4 68 168-239 516-583 (597)
152 3q15_A PSP28, response regulat 95.3 0.075 2.6E-06 47.5 9.0 67 167-233 221-288 (378)
153 3qwp_A SET and MYND domain-con 95.2 0.06 2.1E-06 52.0 8.8 65 169-233 288-356 (429)
154 2l6j_A TPR repeat-containing p 95.2 0.023 8E-07 40.6 4.6 65 168-232 38-104 (111)
155 3qww_A SET and MYND domain-con 95.2 0.091 3.1E-06 51.1 10.1 66 168-233 298-367 (433)
156 3ulq_A Response regulator aspa 95.2 0.25 8.7E-06 43.9 12.1 60 174-233 109-170 (383)
157 3ulq_A Response regulator aspa 95.2 0.14 4.7E-06 45.6 10.3 67 167-233 223-291 (383)
158 4abn_A Tetratricopeptide repea 95.1 0.045 1.5E-06 52.0 7.5 66 168-238 137-211 (474)
159 3u3w_A Transcriptional activat 95.1 0.091 3.1E-06 45.5 8.7 68 166-233 194-264 (293)
160 1hz4_A MALT regulatory protein 95.1 0.16 5.4E-06 44.6 10.3 70 168-237 93-166 (373)
161 2qfc_A PLCR protein; TPR, HTH, 95.1 0.21 7.1E-06 43.2 10.9 85 169-253 197-287 (293)
162 3qww_A SET and MYND domain-con 95.0 0.076 2.6E-06 51.7 9.0 68 166-233 338-409 (433)
163 1pc2_A Mitochondria fission pr 95.0 0.33 1.1E-05 42.0 12.0 82 167-254 31-116 (152)
164 2hr2_A Hypothetical protein; a 95.0 0.056 1.9E-06 46.8 7.0 60 170-233 59-129 (159)
165 1hz4_A MALT regulatory protein 94.9 0.12 4.3E-06 45.3 9.2 64 171-234 56-121 (373)
166 3rjv_A Putative SEL1 repeat pr 94.9 0.11 3.7E-06 43.5 8.4 69 166-242 16-88 (212)
167 3qwp_A SET and MYND domain-con 94.7 0.099 3.4E-06 50.5 8.6 67 166-232 327-397 (429)
168 1ouv_A Conserved hypothetical 94.6 0.37 1.3E-05 40.4 11.1 70 167-243 73-150 (273)
169 3q15_A PSP28, response regulat 94.4 0.15 5.1E-06 45.6 8.6 69 166-234 180-250 (378)
170 2xpi_A Anaphase-promoting comp 94.4 0.37 1.3E-05 44.6 11.4 67 171-237 478-547 (597)
171 3u3w_A Transcriptional activat 94.4 0.17 5.9E-06 43.8 8.7 64 170-233 157-223 (293)
172 3mkr_A Coatomer subunit epsilo 94.3 0.19 6.6E-06 44.5 9.1 62 173-238 205-267 (291)
173 2h6f_A Protein farnesyltransfe 94.3 0.14 5E-06 48.2 8.7 68 168-239 131-199 (382)
174 1zu2_A Mitochondrial import re 94.2 0.28 9.5E-06 42.5 9.7 77 168-248 36-133 (158)
175 2ifu_A Gamma-SNAP; membrane fu 94.0 0.099 3.4E-06 46.0 6.6 66 168-234 116-183 (307)
176 2pzi_A Probable serine/threoni 94.0 0.082 2.8E-06 52.9 6.7 67 168-238 433-499 (681)
177 3mv2_B Coatomer subunit epsilo 93.9 0.33 1.1E-05 46.0 10.3 65 171-237 103-167 (310)
178 4f3v_A ESX-1 secretion system 93.9 0.092 3.2E-06 49.1 6.4 66 170-238 137-202 (282)
179 3bee_A Putative YFRE protein; 93.7 0.22 7.6E-06 38.2 7.3 48 168-216 43-90 (93)
180 1klx_A Cysteine rich protein B 93.7 0.41 1.4E-05 37.9 9.0 68 166-240 55-130 (138)
181 4b4t_Q 26S proteasome regulato 93.6 0.2 7E-06 44.4 7.9 66 168-233 135-202 (434)
182 2kat_A Uncharacterized protein 93.6 0.13 4.3E-06 38.0 5.5 51 185-239 2-52 (115)
183 1na3_A Designed protein CTPR2; 93.3 0.4 1.4E-05 32.9 7.4 48 169-220 44-91 (91)
184 3ly7_A Transcriptional activat 93.1 0.4 1.4E-05 46.9 9.7 73 173-250 282-354 (372)
185 2h6f_A Protein farnesyltransfe 93.1 0.26 8.9E-06 46.4 8.2 68 168-239 166-233 (382)
186 4g1t_A Interferon-induced prot 92.6 1 3.6E-05 40.4 10.9 77 169-245 248-373 (472)
187 2ooe_A Cleavage stimulation fa 92.5 0.91 3.1E-05 42.7 10.9 73 172-251 17-89 (530)
188 2ond_A Cleavage stimulation fa 92.5 0.79 2.7E-05 40.0 9.8 50 181-234 182-231 (308)
189 2ond_A Cleavage stimulation fa 92.4 0.72 2.5E-05 40.2 9.4 67 170-238 205-273 (308)
190 1nzn_A CGI-135 protein, fissio 92.2 3.7 0.00013 34.5 13.2 81 168-253 35-118 (126)
191 4g1t_A Interferon-induced prot 92.1 0.46 1.6E-05 42.7 8.0 61 173-233 56-121 (472)
192 3rjv_A Putative SEL1 repeat pr 90.9 2.3 8E-05 35.3 10.7 71 168-244 125-205 (212)
193 2xm6_A Protein corresponding t 90.7 1.7 6E-05 40.3 10.6 67 168-241 75-149 (490)
194 2ff4_A Probable regulatory pro 90.2 1.8 6.1E-05 41.0 10.4 74 166-240 113-205 (388)
195 2xm6_A Protein corresponding t 89.7 1.8 6.1E-05 40.3 9.8 65 168-238 363-435 (490)
196 2kc7_A BFR218_protein; tetratr 89.2 0.16 5.6E-06 36.1 1.9 52 170-233 37-88 (99)
197 1qsa_A Protein (soluble lytic 87.6 1.2 4.1E-05 45.7 7.7 72 171-249 289-360 (618)
198 3o48_A Mitochondria fission 1 87.5 1.6 5.5E-05 37.4 7.3 80 168-253 40-122 (134)
199 3e4b_A ALGK; tetratricopeptide 87.2 0.13 4.5E-06 48.5 0.4 54 174-233 9-65 (452)
200 2ooe_A Cleavage stimulation fa 86.3 3.2 0.00011 39.0 9.2 55 181-238 292-353 (530)
201 1y8m_A FIS1; mitochondria, unk 85.5 3.3 0.00011 35.9 8.2 82 167-254 38-122 (144)
202 2xrh_A Protein HP0721; unknown 84.4 3.7 0.00013 33.9 7.7 76 75-156 6-86 (100)
203 1te4_A Conserved protein MTH18 83.0 7.7 0.00026 30.1 8.8 58 185-250 72-129 (131)
204 3ffl_A Anaphase-promoting comp 82.8 3.1 0.0001 36.8 7.0 64 170-233 22-90 (167)
205 3ma5_A Tetratricopeptide repea 81.0 2.4 8.1E-05 31.1 4.9 36 203-238 4-39 (100)
206 3mv2_B Coatomer subunit epsilo 80.5 12 0.0004 35.4 10.6 55 178-237 186-242 (310)
207 1klx_A Cysteine rich protein B 78.2 6.3 0.00022 30.9 6.8 62 174-242 31-96 (138)
208 2p58_C Putative type III secre 77.9 5.4 0.00019 33.7 6.5 67 176-252 48-114 (116)
209 2cfu_A SDSA1; SDS-hydrolase, l 75.8 5.5 0.00019 40.8 7.3 62 168-233 449-517 (658)
210 3ltm_A Alpha-REP4; protein eng 75.7 5.6 0.00019 32.6 6.1 61 185-253 142-202 (211)
211 2uwj_G Type III export protein 75.6 5.2 0.00018 33.8 5.8 67 176-252 47-113 (115)
212 3ltj_A Alpharep-4; protein eng 75.2 6.7 0.00023 31.9 6.4 62 185-254 137-198 (201)
213 2ijq_A Hypothetical protein; s 74.7 11 0.00039 32.9 8.0 84 167-250 31-129 (161)
214 3mkq_A Coatomer beta'-subunit; 67.9 17 0.00056 35.2 8.2 34 216-251 759-796 (814)
215 3txn_A 26S proteasome regulato 66.8 70 0.0024 31.1 12.5 72 171-242 102-179 (394)
216 3ltj_A Alpharep-4; protein eng 66.4 9.8 0.00033 30.9 5.5 62 185-254 75-136 (201)
217 1xi4_A Clathrin heavy chain; a 66.3 15 0.0005 42.5 8.5 75 156-239 1093-1167(1630)
218 3ax2_A Mitochondrial import re 64.6 18 0.00062 28.0 6.3 36 166-201 15-50 (73)
219 1zu2_A Mitochondrial import re 64.5 5.1 0.00017 34.5 3.6 55 182-240 16-80 (158)
220 3e4b_A ALGK; tetratricopeptide 62.9 14 0.00047 34.7 6.5 60 171-233 144-206 (452)
221 2cwy_A Hypothetical protein TT 62.4 8.2 0.00028 30.6 4.2 59 171-231 4-64 (94)
222 4fm3_A Uncharacterized hypothe 62.0 19 0.00065 29.5 6.3 60 163-227 29-88 (98)
223 2hsb_A Hypothetical UPF0332 pr 61.3 17 0.00059 28.5 5.9 34 162-195 6-39 (126)
224 1b89_A Protein (clathrin heavy 59.8 17 0.00058 36.3 6.8 22 173-194 153-174 (449)
225 3ltm_A Alpha-REP4; protein eng 59.6 14 0.00047 30.3 5.2 62 185-254 111-172 (211)
226 3dss_A Geranylgeranyl transfer 59.2 57 0.0019 30.7 10.0 82 167-253 28-122 (331)
227 3mkq_A Coatomer beta'-subunit; 59.0 4.9 0.00017 38.9 2.7 62 172-233 685-763 (814)
228 1zbp_A Hypothetical protein VP 58.9 28 0.00097 32.9 7.8 67 175-245 4-70 (273)
229 2yhe_A SEC-alkyl sulfatase; hy 63.0 2.1 7.1E-05 44.4 0.0 54 168-225 461-514 (668)
230 3mv2_A Coatomer subunit alpha; 57.4 66 0.0023 31.1 10.2 83 171-254 117-255 (325)
231 2ynq_A ESSB; membrane protein, 55.2 36 0.0012 30.1 7.3 67 168-243 8-106 (161)
232 1wjt_A Transcription elongatio 54.6 26 0.0009 28.4 6.0 61 178-254 24-84 (103)
233 1te4_A Conserved protein MTH18 54.3 28 0.00094 26.9 5.9 59 188-254 44-102 (131)
234 3l9t_A Putative uncharacterize 53.7 48 0.0017 30.8 8.3 73 175-252 26-98 (240)
235 2v5f_A Prolyl 4-hydroxylase su 53.6 36 0.0012 25.3 6.3 34 169-202 47-80 (104)
236 3u64_A Protein TP_0956; tetrat 53.2 94 0.0032 29.7 10.5 68 182-252 218-295 (301)
237 3dra_A Protein farnesyltransfe 53.0 48 0.0016 30.5 8.2 68 169-240 33-103 (306)
238 2vkj_A TM1634; membrane protei 52.5 20 0.00069 29.6 4.9 34 166-199 51-84 (106)
239 3dra_A Protein farnesyltransfe 51.9 56 0.0019 30.1 8.5 63 175-238 74-142 (306)
240 1pc2_A Mitochondria fission pr 51.3 35 0.0012 29.3 6.5 33 168-200 71-103 (152)
241 1wol_A ST0689, 122AA long cons 49.7 26 0.00091 27.6 5.2 35 162-196 5-39 (122)
242 1om2_A Protein (mitochondrial 49.3 26 0.0009 28.4 5.2 35 166-200 18-52 (95)
243 4b4t_P 26S proteasome regulato 48.8 1.4E+02 0.0047 28.8 11.0 77 167-243 136-218 (445)
244 1ufb_A TT1696 protein; structu 48.4 27 0.00093 27.5 5.1 35 162-196 5-39 (127)
245 3mkr_B Coatomer subunit alpha; 47.7 1.4E+02 0.0047 28.8 10.7 83 171-254 105-246 (320)
246 3vkg_A Dynein heavy chain, cyt 46.4 1.1E+02 0.0038 37.7 11.8 27 149-175 1980-2006(3245)
247 1oyz_A Hypothetical protein YI 43.4 83 0.0028 26.7 7.7 44 207-252 143-186 (280)
248 3myv_A SUSD superfamily protei 42.7 58 0.002 31.2 7.4 50 184-233 164-217 (454)
249 1oyz_A Hypothetical protein YI 42.5 70 0.0024 27.2 7.1 62 186-254 159-221 (280)
250 1w63_A Adapter-related protein 41.0 48 0.0017 32.9 6.7 79 187-272 510-594 (618)
251 1nzn_A CGI-135 protein, fissio 40.6 34 0.0012 28.6 4.7 32 170-201 76-107 (126)
252 3lew_A SUSD-like carbohydrate 39.5 81 0.0028 30.7 7.9 54 183-236 173-233 (495)
253 2vgl_A Adaptor protein complex 38.5 20 0.00068 36.0 3.5 50 205-255 534-590 (621)
254 3kez_A Putative sugar binding 37.4 76 0.0026 30.5 7.2 50 184-233 170-223 (461)
255 1xi4_A Clathrin heavy chain; a 36.9 54 0.0019 38.0 6.9 52 170-233 1197-1248(1630)
256 3t5x_A PCI domain-containing p 36.7 1.1E+02 0.0039 26.6 7.7 57 166-222 12-69 (203)
257 1b89_A Protein (clathrin heavy 36.3 19 0.00067 35.9 3.0 51 170-232 124-174 (449)
258 1o3u_A Conserved hypothetical 36.3 49 0.0017 26.8 5.0 31 166-196 14-44 (135)
259 4e6h_A MRNA 3'-END-processing 34.9 75 0.0026 32.7 7.1 58 172-233 347-405 (679)
260 4afl_A P29ING4, inhibitor of g 34.5 1.6E+02 0.0056 22.9 8.1 35 145-179 62-96 (104)
261 4efa_E V-type proton ATPase su 34.4 1.7E+02 0.0058 25.7 8.5 55 101-159 13-67 (233)
262 1dce_A Protein (RAB geranylger 34.3 85 0.0029 31.1 7.2 62 174-239 34-106 (567)
263 2qf9_A Putative secreted prote 34.2 36 0.0012 29.5 4.0 34 221-254 123-156 (179)
264 3hdx_A SUSD homolog, SUSD supe 33.5 72 0.0025 30.7 6.4 51 184-234 156-225 (478)
265 3l8r_A PTCA, putative PTS syst 33.3 1.6E+02 0.0055 24.6 7.7 63 151-217 20-82 (120)
266 3u64_A Protein TP_0956; tetrat 32.9 90 0.0031 29.8 6.8 54 184-239 179-237 (301)
267 3mcx_A SUSD superfamily protei 32.9 93 0.0032 29.9 7.0 51 184-234 176-230 (477)
268 4fx5_A VON willebrand factor t 31.8 79 0.0027 30.9 6.4 31 166-196 380-410 (464)
269 2wpv_A GET4, UPF0363 protein Y 31.6 3.3E+02 0.011 25.6 11.4 52 168-219 32-86 (312)
270 3lpz_A GET4 (YOR164C homolog); 31.2 1.3E+02 0.0044 29.0 7.6 16 118-133 12-27 (336)
271 3jq1_A SUSD superfamily protei 31.1 70 0.0024 31.0 5.9 50 184-233 154-207 (481)
272 3mkq_B Coatomer subunit alpha; 30.8 2.5E+02 0.0085 24.6 8.9 37 157-193 23-59 (177)
273 3o10_A Sacsin; all-helical dom 30.4 54 0.0018 27.2 4.3 35 162-196 10-44 (141)
274 4ffb_C Protein STU2; tubulin f 30.0 1.7E+02 0.0058 25.4 7.7 65 185-252 138-210 (278)
275 2vgl_B AP-2 complex subunit be 29.6 50 0.0017 32.3 4.6 73 179-254 450-532 (591)
276 3jys_A SUSD superfamily protei 29.5 1E+02 0.0036 30.1 6.8 50 184-233 161-221 (499)
277 4g26_A Pentatricopeptide repea 29.5 1.4E+02 0.0049 28.9 7.8 67 171-241 142-212 (501)
278 3qnk_A Putative lipoprotein; a 29.4 1.2E+02 0.0042 29.4 7.3 50 184-233 153-209 (517)
279 3q7a_A Farnesyltransferase alp 29.0 2E+02 0.0069 27.3 8.6 60 175-238 95-157 (349)
280 2pmr_A Uncharacterized protein 28.4 2.2E+02 0.0076 22.5 7.4 51 141-191 7-62 (87)
281 4g26_A Pentatricopeptide repea 28.2 1.5E+02 0.0051 28.8 7.6 54 177-234 114-168 (501)
282 4gns_B Protein CSD3, chitin bi 26.1 1.5E+02 0.0051 31.4 7.6 65 170-242 339-403 (754)
283 1lq7_A Alpha3W; three helix bu 25.6 1.7E+02 0.0058 22.1 5.8 22 115-136 27-48 (67)
284 4b4t_R RPN7, 26S proteasome re 24.4 1.4E+02 0.0047 28.4 6.5 76 167-243 130-208 (429)
285 4b4t_P 26S proteasome regulato 23.7 4.4E+02 0.015 25.2 10.0 88 168-256 177-273 (445)
286 4ady_A RPN2, 26S proteasome re 23.3 1.1E+02 0.0036 33.7 6.1 79 171-252 527-605 (963)
287 3ax2_A Mitochondrial import re 23.2 94 0.0032 23.9 4.2 39 209-254 20-59 (73)
288 1wcr_A PTS system, N, N'-diace 22.9 2.8E+02 0.0096 22.4 7.2 43 154-196 4-46 (103)
289 4a5x_A MITD1, MIT domain-conta 21.9 1.2E+02 0.004 23.5 4.6 29 168-196 16-44 (86)
290 2qf9_A Putative secreted prote 21.6 89 0.003 27.0 4.2 29 222-250 20-48 (179)
291 3snx_A SUSD homolog, putative 21.5 2.1E+02 0.0072 27.6 7.2 51 184-234 160-219 (460)
292 1om2_A Protein (mitochondrial 21.2 87 0.003 25.3 3.7 39 209-254 23-62 (95)
293 2ra1_A Surface layer protein; 20.9 6.4E+02 0.022 25.3 10.5 69 146-214 148-220 (412)
294 4e6h_A MRNA 3'-END-processing 20.4 5.9E+02 0.02 26.1 10.6 49 183-237 485-535 (679)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=3.5e-06 Score=69.80 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
+..-+..|...+..|+|.+|++.|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+.....+|++.++++|+.
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456678999999999999999999999987753 368899999999999999999999998889999999999999
Q ss_pred HHhhhc
Q 019243 248 LRYILQ 253 (344)
Q Consensus 248 LLyILE 253 (344)
+|..|+
T Consensus 146 ll~~l~ 151 (151)
T 3gyz_A 146 YLDAIQ 151 (151)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999874
No 2
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.40 E-value=5.7e-06 Score=61.67 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
...+..|...+..|+|.+|+..|+.++...|. ++....+.++++.+|...|+.++|+..++.+...+|+......|+..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45678899999999999999999999987664 34457899999999999999999999999998899999988888887
Q ss_pred HhhhcC
Q 019243 249 RYILQA 254 (344)
Q Consensus 249 LyILEA 254 (344)
+..+..
T Consensus 119 l~~l~~ 124 (129)
T 2xev_A 119 LQSIRL 124 (129)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 777654
No 3
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=5.3e-05 Score=54.74 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.++.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999976653 5788999999999999999999999988677774
No 4
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.18 E-value=1.3e-05 Score=67.39 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
++..|..|...+.+|+|.+|+..|+.++...| .++...++.++++.+|...|+.++||..++.+...+|+..-
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 45689999999999999999999999998766 45677899999999999999999999999999888998653
No 5
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=2.5e-05 Score=58.12 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..|..|...+..|+|.+|+.+|+.++...| +++...++.++++.+|...|+.++|+..|+.+...+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 468889999999999999999999998766 455667899999999999999999999999988788875
No 6
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.02 E-value=4.6e-05 Score=64.45 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.++..|..|...+.+|+|.+|+.+|+.++...|. ++...++.++++.+|...|+.++|+..|+.+...+|+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 3667899999999999999999999999987654 55668999999999999999999999999999788854
No 7
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.00 E-value=6.6e-05 Score=57.71 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
+..-|+.|..+|.+|+|.+|+.+|+.|+...+.. +..-..+-..|+.||...|+.++|+.+++.+.+-.|+...-
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4567899999999999999999999999865432 23456888999999999999999999999988677876443
No 8
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.99 E-value=7.6e-05 Score=63.13 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP 237 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~----------Gq~ekAIALCq~L~~~HP 237 (344)
++..+..|...+..|+|.+||..|+.++...|. ++...++.++++.+|... |+.++|+..|+.+...+|
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344689999999999999999999999987664 566789999999999988 888999999999998999
Q ss_pred CHHHHHHHHHHHhhh
Q 019243 238 SKNIRRQAADLRYIL 252 (344)
Q Consensus 238 d~qVRqQAK~LLyIL 252 (344)
+...-..|..+|..+
T Consensus 227 ~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 227 DSPLLRTAEELYTRA 241 (261)
T ss_dssp TCTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 998888888777655
No 9
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.98 E-value=6.9e-05 Score=54.45 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG---GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
+...+..|...+..|+|.+|+.+++.++...+.+.... ..+.+.++.+|...|+.++|+..++.....+|++.+...
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567789999999999999999999998765332222 678899999999999999999999998878899999888
Q ss_pred HHHHHhhhc
Q 019243 245 AADLRYILQ 253 (344)
Q Consensus 245 AK~LLyILE 253 (344)
...+...+.
T Consensus 118 l~~~~~~~~ 126 (131)
T 1elr_A 118 CQQAEKILK 126 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777664
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=7.1e-05 Score=56.43 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
++..+..|...+.+|+|.+|++.|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4556777777777777777777777777765542 466777777777777777777777777655554
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.91 E-value=9.4e-05 Score=58.07 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
|+.....|...|++|+|.+||+.|+.++...|.+ ..+-..++.+|...|+.++||..|++...-+|+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 3344556666666666666666666666654432 355566666666666666666666665534444
No 12
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=5e-05 Score=56.84 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQA 245 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~---~HPd~qVRqQA 245 (344)
...+..|...+..|+|.+|+.+|+.++...|.. ..+.+.|+.+|...|+.++|+..+++... .+++.......
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 457888999999999999999999999977653 35889999999999999999999987652 35666666666
Q ss_pred HHHHhhh
Q 019243 246 ADLRYIL 252 (344)
Q Consensus 246 K~LLyIL 252 (344)
..+|..+
T Consensus 84 ~~~l~~~ 90 (100)
T 3ma5_A 84 QDAKLKA 90 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666544
No 13
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=0.00012 Score=55.36 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQAK 246 (344)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+...++.+|...|+.++|+..+++....+|+ +.+....+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4567888999999999999999999999987764 689999999999999999999999987656664 55555555
Q ss_pred HHHhhhc
Q 019243 247 DLRYILQ 253 (344)
Q Consensus 247 ~LLyILE 253 (344)
-+.+-..
T Consensus 103 ai~~~~~ 109 (117)
T 3k9i_A 103 AILFYAD 109 (117)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 4444443
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.87 E-value=0.00016 Score=58.08 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----HHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR 243 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd----~qVRq 243 (344)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+.+.++.+|...|+.++|+..++......|+ ..+++
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 3346778999999999999999999999977653 467899999999999999999999988766776 67888
Q ss_pred HHHHHHhhhcC
Q 019243 244 QAADLRYILQA 254 (344)
Q Consensus 244 QAK~LLyILEA 254 (344)
.|..+|..|..
T Consensus 131 ~~~~~l~~l~~ 141 (148)
T 2vgx_A 131 RVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 15
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.86 E-value=9e-05 Score=53.59 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGE-aQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.|..|...+..|+|.+|++.|+.++...|.+ .. +.+.++.+|...|+.++|+..++.....+|+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4678999999999999999999999976543 45 88999999999999999999999988777764
No 16
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=7.2e-05 Score=59.17 Aligned_cols=65 Identities=22% Similarity=0.064 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|..|+..++.++...|. ...+-+.++.+|...|+.++|+..++.....+|+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 3444566666666666666666666665433 2456666666666666666666666665545554
No 17
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.82 E-value=0.00016 Score=56.51 Aligned_cols=82 Identities=10% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR 243 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP----d~qVRq 243 (344)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..++.....+| ...++.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE----PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 3446778999999999999999999999976653 36788999999999999999999998775666 456777
Q ss_pred HHHHHHhhhc
Q 019243 244 QAADLRYILQ 253 (344)
Q Consensus 244 QAK~LLyILE 253 (344)
.+..++..+.
T Consensus 128 ~~~~~l~~l~ 137 (142)
T 2xcb_A 128 RAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 18
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.82 E-value=0.00017 Score=57.16 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44555666666666666666666666654432 456666666666666666666666655544443
No 19
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00016 Score=56.53 Aligned_cols=80 Identities=8% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~---lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
+...+..|...+..|+|.+||+.++.++...|.+.. .-+++-.-+..+|.+.|+.++||..|++-...||++++.+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 334566788889999999999999998876553322 23566777888999999999999998875557899888765
Q ss_pred HHH
Q 019243 245 AAD 247 (344)
Q Consensus 245 AK~ 247 (344)
-++
T Consensus 122 l~~ 124 (127)
T 4gcn_A 122 VKE 124 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 20
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00017 Score=51.38 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3445666666667777777777777766654432 455666666666777777777766666544543
No 21
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00034 Score=48.86 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+.+++.++...|.+ ..+...++.+|...|+.++|+..++.....+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4456788999999999999999999999876543 5788899999999999999999999987667753
No 22
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.71 E-value=0.00047 Score=52.58 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+++++.++...|. ...+.+.++.+|...|+.++|+..+++....+|+.
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 344566778888888888888888888876553 25677788888888888888888888877566643
No 23
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.70 E-value=0.00023 Score=55.25 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..++...
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 53 AWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555555443321 2344555555555555555555555444
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.68 E-value=0.00037 Score=52.25 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+..|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 34455555555555555555555555543321 344555555555555555555555554433443
No 25
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=0.00082 Score=50.27 Aligned_cols=67 Identities=15% Similarity=-0.039 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|+..++.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3445556666666777777777777666654432 456666666777777777777766666545554
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.67 E-value=0.0004 Score=54.19 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+.+|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|+......|+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567889999999999999999999999876643 577889999999999999999999998866665
No 27
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.66 E-value=0.00034 Score=54.61 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|....+.|..+|.+|+|.+||++++.+++..|.+ ..+-..++.+|...|+.++||..|++..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3345578999999999999999999999987653 5677889999999999999999999876
No 28
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.65 E-value=0.00017 Score=60.20 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmw----------------LatAYeA~Gq~ekAIALCq~ 231 (344)
+...+..|..++..|+|.+|+++|+.++...|. ...+..+ ++.+|...|+.++|+..|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556889999999999999999999999986543 4567888 99999999999999999999
Q ss_pred HHhhCCCH
Q 019243 232 LESNHPSK 239 (344)
Q Consensus 232 L~~~HPd~ 239 (344)
....+|+.
T Consensus 80 al~~~p~~ 87 (208)
T 3urz_A 80 LLQKAPNN 87 (208)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 88788864
No 29
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.64 E-value=0.00043 Score=55.32 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA 245 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQA 245 (344)
.+...|..|...++.|+|..|+++|+.++...|. ...+...|+.+|...|+.++|+..++.....+|+ +.+--.-
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3445678899999999999999999999987654 3678889999999999999999999987767775 4444333
Q ss_pred HHH
Q 019243 246 ADL 248 (344)
Q Consensus 246 K~L 248 (344)
-.+
T Consensus 106 a~~ 108 (150)
T 4ga2_A 106 AEL 108 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 30
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.63 E-value=0.00061 Score=49.36 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
++...+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|+.....+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 45677889999999999999999999999876543 57889999999999999999999999874444
No 31
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.63 E-value=0.00067 Score=48.94 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+..|+|..|+.+|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence 34444555555555555555555554433321 34444455555555555555555544443333
No 32
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00029 Score=52.59 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP---d~qVRqQ 244 (344)
+...+..|...+..|+|.+|+..|+.++...|. ...+.+.|+.+|...|+.++|+..++......| +......
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 345778899999999999999999999997654 367889999999999999999999998764333 4444444
Q ss_pred HHHHHhhh
Q 019243 245 AADLRYIL 252 (344)
Q Consensus 245 AK~LLyIL 252 (344)
...++.-|
T Consensus 95 l~~~l~~l 102 (115)
T 2kat_A 95 LQVFLRRL 102 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444433
No 33
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.62 E-value=0.0015 Score=62.11 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 167 TAQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y-~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
.+...+..|...+..|+| .+|+++|+.++...|. ...+...|+.+|...|+.++|+..|+......|++.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 172 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS 172 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHH
Confidence 367789999999999999 9999999999997654 3689999999999999999999999999877887543
No 34
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.62 E-value=0.00035 Score=49.46 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-Gq~ekAIALCq~L~~~HPd~ 239 (344)
..+..|...+..|+|.+|+++|+.++...|. .....+...++.+|... |+.++|+..++.+...+|+.
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 3466788888888888888888888876544 22457788888888888 88888888888888666653
No 35
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.61 E-value=0.00048 Score=55.27 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+...+..|...+.+|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|+......|+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999999999876653 577788999999999999999999998866675
No 36
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.60 E-value=0.00068 Score=55.24 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--Cch----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFG----------GEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S--~lG----------GEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
...+...+..|...+.+|+|.+|+.++..++...+... ..+ ..+...++.+|...|+.++|+..|+..
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455677788888888888888888888887665432 111 267778888888888888888888887
Q ss_pred HhhCCC
Q 019243 233 ESNHPS 238 (344)
Q Consensus 233 ~~~HPd 238 (344)
...+|+
T Consensus 115 l~~~p~ 120 (198)
T 2fbn_A 115 LKIDKN 120 (198)
T ss_dssp HHHSTT
T ss_pred HHhCcc
Confidence 755654
No 37
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.0013 Score=49.15 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+.+|+|..|+++|+.++...|. .+.-..+.+.++.+|...|+.++|+..|+.....+|+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 456788999999999999999999999987653 2333688899999999999999999999998767775
No 38
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.58 E-value=0.00044 Score=50.67 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+..|+|.+|+.+|+.++...|. ...+.+.++.+|...|+.++|+..++.....+|
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 3444455555555555555555555554332 234445555555555555555555555443333
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.56 E-value=0.00042 Score=54.95 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
++..-+..|...+.+|+|.+|++.|+.+++..|.+ ..+...|+.+|...|+.++|+..++.+...+|+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 45566789999999999999999999999976643 57889999999999999999999999986777643
No 40
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.54 E-value=0.00095 Score=47.21 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+..|...+.+|+|.+|+.+++.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999976543 578889999999999999999999998866776
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.54 E-value=0.00043 Score=57.20 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+...|..|...+..|+|.+|+++|+.++...|. ...+-+.|+.+|...|+.++||..|++.....|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3556899999999999999999999999997664 3567888999999999999999999998877776
No 42
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.001 Score=49.96 Aligned_cols=65 Identities=15% Similarity=-0.038 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
+...+..|...+..|+|.+|+..++.++...|.+ ..+.+.++.+|...|+.++|+..+++....+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3457788999999999999999999999976653 6789999999999999999999999887566
No 43
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.48 E-value=0.0032 Score=45.34 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|++.++.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 3456778999999999999999999999875543 678899999999999999999999998767774
No 44
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.47 E-value=0.00067 Score=56.92 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+.+|+|.+|+..|+.++...|. ++...++...++.+|...|+.++|+..++.|...+|+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 4577899999999999999999999998775 4566799999999999999999999999999866664
No 45
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.46 E-value=0.00041 Score=53.85 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..|..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+......|+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 35788999999999999999999999976653 6889999999999999999999999988677753
No 46
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.43 E-value=0.0018 Score=46.31 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+..|...+..|+|.+|+.+|+.++...+.+ ..+...++.+|...|+.++|+..++.....+|
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4445555556666666666666655543321 34445555556666666666666555543444
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.40 E-value=0.00084 Score=55.18 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+.+|+|.+|+..|+.++...|... ..+..+++.+|...|+.++|+..|++....+|+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 344555555555555555555555555444111 134445555555555555555555555434443
No 48
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.39 E-value=0.00068 Score=59.78 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
...+..|..++.+|+|.+|+++|+.+++..|.+ ..+.+.|+.+|...|+.++|+.+++.+...+|+....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 356889999999999999999999999977754 5899999999999999999999999998788877644
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00081 Score=60.38 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
.+.++..+..|..++..|+|.+|+..|+.++...|. ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 455667788888888888888888888888876642 5677778888888888888888888777566664
No 50
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.0016 Score=46.22 Aligned_cols=68 Identities=21% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
....+..|...+..|+|..|+..++.++...|. ...+...++.+|...|+.++|+..++.....+|+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 345677899999999999999999999987654 36788999999999999999999999988566643
No 51
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.35 E-value=0.0012 Score=52.25 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+...+..|...+.+|+|.+|+++|+.++...|.+ ..+.+.++.+|...|+.++|+..|+.....+|+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 346678999999999999999999999999977653 678899999999999999999999998877776
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.33 E-value=0.003 Score=49.38 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.++.++...|. ...+-+.++.+|...|+.++|+..+++..+-+|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK----FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 445678899999999999999999999997654 35788999999999999999999999988677754
No 53
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.31 E-value=0.0014 Score=54.54 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
..+..|...+..|+|.+|+..|+.+++..|. ...+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3455899999999999999999999997665 368899999999999999999999999987888743
No 54
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.30 E-value=0.0059 Score=43.53 Aligned_cols=67 Identities=28% Similarity=0.449 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|+++|+.++...|. ...+...++.+|...|+.++|+.+++.....+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 445678899999999999999999999987653 3578889999999999999999999998756664
No 55
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.27 E-value=0.0042 Score=50.54 Aligned_cols=82 Identities=16% Similarity=0.026 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-HHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd-~qVRqQAK 246 (344)
+...+..|...+..|+|.+|+.+++.++...|. ...+.+.++.+|...|+.++|+..++.....+|+ +.+...-.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 445778899999999999999999999997654 3688999999999999999999999988767774 55666555
Q ss_pred HHHhhhc
Q 019243 247 DLRYILQ 253 (344)
Q Consensus 247 ~LLyILE 253 (344)
.++..+.
T Consensus 164 ~~~~~~~ 170 (198)
T 2fbn_A 164 LCVNKLK 170 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.27 E-value=0.0012 Score=52.23 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
....+..|...+..|+|.+|++.|+.++...|. ...+...++.+|...|+.++|+..+++....+|
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG----FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch----hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 345677899999999999999999999987654 357889999999999999999999998774444
No 57
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.27 E-value=0.002 Score=48.17 Aligned_cols=67 Identities=12% Similarity=-0.045 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|..|+..|+.++...|. ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 345778899999999999999999999997654 4678999999999999999999999988755554
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.25 E-value=0.003 Score=53.29 Aligned_cols=67 Identities=12% Similarity=0.234 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+..|...+..|+|.+|+..|+.++...|.+...-..+-+.++.+|...|+.++|+.+|+.....+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 3445777777888888888888877776665444455566677778888888888888877775566
No 59
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.23 E-value=0.0038 Score=49.15 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
+...|..|...+..|+|.+|++.|+.++...|.
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 556788899999999999999999999987664
No 60
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.23 E-value=0.0029 Score=48.18 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345556667777777777777777777777654432 456666777777777777777777666545554
No 61
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.23 E-value=0.0014 Score=54.91 Aligned_cols=67 Identities=27% Similarity=0.315 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
...+..|...+.+|+|.+|+..|+.++...|. ...+...++.+|...|+.++|+..+++.....|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ----DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34678899999999999999999999986554 36889999999999999999999999988778864
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.22 E-value=0.0045 Score=49.76 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S------------~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~ 235 (344)
+...+..|...+..|+|.+|++.|+.++...|.+. +....+...++.+|...|+.++|+..++.....
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 44567889999999999999999999999877643 455689999999999999999999999998867
Q ss_pred CCCHHH
Q 019243 236 HPSKNI 241 (344)
Q Consensus 236 HPd~qV 241 (344)
+|+...
T Consensus 151 ~p~~~~ 156 (213)
T 1hh8_A 151 KSEPRH 156 (213)
T ss_dssp CCSGGG
T ss_pred Cccccc
Confidence 776654
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.20 E-value=0.0022 Score=54.13 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
....+..|...+..|+|.+|+..|+.++...|. ...+...++.+|...|+.++|+..|+...+.+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 345666777777788888888888887776443 236777778888888888888888887774455
No 64
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.18 E-value=0.0013 Score=59.70 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.+.++..+..|...+.+|+|.+|+.+|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3456677888888888888888888888888766543 467777888888888888888888877656665
No 65
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.15 E-value=0.005 Score=44.91 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+...++.+|...|+.++|+.+|+...+.+|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4457888999999999999999999999865543 688899999999999999999999998866775
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.09 E-value=0.0046 Score=51.13 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+.+|+.++...+.+...-..+...++.+|...|+.++|+..+++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667788888888888888888888887655444446777788888888888888888877643
No 67
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.09 E-value=0.00061 Score=54.84 Aligned_cols=69 Identities=7% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
..+..|...+..|+|.+|+..|+.++...|. ...+.+.++.+|...|+.++|+..++.+...+|++.+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH
Confidence 4678899999999999999999999986554 36889999999999999999999999988667755543
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.08 E-value=0.0051 Score=48.64 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+..|...+..|+|.+|+++|+.++...|.+ ..+...++.+|...|+.++|+.+++...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3444445555555555555555544433321 3344444555555555555555554444
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.05 E-value=0.0056 Score=43.76 Aligned_cols=64 Identities=30% Similarity=0.467 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+..|+|.+|+++|+.++...+.. ..+...++.+|...|+.++|+..++......|
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 34556677777777777777777777654432 45666677777777777777777776653444
No 70
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.04 E-value=0.003 Score=57.37 Aligned_cols=67 Identities=16% Similarity=0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
...+..|...+..|+|.+|++.++.++...|. ...+.+.++.+|...|+.++|+..+++....+|+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 45566777788888888888888888876554 35677888888888888888888887776566653
No 71
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.02 E-value=0.0023 Score=56.42 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+...+..|...+.+|+|.+|+++|+.++...+.+...-..+...++.+|...|+.++|+..|++..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44556777888888888888888888888887665444445677788888888888888888877655
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.00 E-value=0.003 Score=55.62 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.++.++...|. ...+...++.+|...|+.++|+..++.....+|+.
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 445677889999999999999999999886543 35788899999999999999999998876456543
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.00 E-value=0.004 Score=51.47 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+..|...+..|+|.+|+..|+.++...|.+ ..+...++.+|...|+.++|+..++.....+|
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 3455666666666666666666666544432 24555666666666666666666655553333
No 74
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.99 E-value=0.0039 Score=52.26 Aligned_cols=68 Identities=25% Similarity=0.179 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
+...+..|...+..|+|.+|++.|+.++... ....+.+.|+.+|...|+.++|+..|+.....+|+..
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 3456778999999999999999999999876 2367889999999999999999999999887788643
No 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.98 E-value=0.0053 Score=43.92 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+.+|+.++...+. ...+...++.+|...|+.++|+.+++.....+|+
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3445566666777777777777776665433 2355566677777777777777777666544543
No 76
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0033 Score=50.85 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..++..+..|...+..|+|.+|+.+|+.++... . ...+...++.+|...|+.++|+..++.....+|
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 356778999999999999999999999999876 2 257899999999999999999999999884444
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.96 E-value=0.0044 Score=47.16 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+..|...+..|+|.+|+.+|+.++...+.+ ..+...++.+|...|+.++|+..++...
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445666666666666666666666554322 4556666666666666666666666554
No 78
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.93 E-value=0.0036 Score=54.60 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+...|+.+|...|+.++|+.+++.....+|+
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 4456777888888888888888888888865542 577888888888888888888888888744443
No 79
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.0082 Score=51.92 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
+...+..|..++..|+|.+|+.+|+.++...+.+...-..+.+.++.+|...|+.++|+..|++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33456677777777777777777777777655444444566777777777777777777776653
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.92 E-value=0.0039 Score=47.44 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
..+..|...+..|+|.+|+.+++.++...|. ...+.+.++.+|...|+.++|+.+++.....+|
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 107 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADAPD----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3444555556666666666666665554332 234555556666666666666666655553443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.91 E-value=0.0066 Score=49.82 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
..+..|...+..|+|.+|+.+|+.++...|. ...+.+.++.+|...|+.++|+..|+.....+|+..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 4566899999999999999999999985543 578899999999999999999999999987788643
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0065 Score=49.07 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG---GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq 243 (344)
+...+..|...+..|+|.+|+..|+.++...|...+.. ..+...++.+|...|+.++|+..++.....+|+..+-.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 34577889999999999999999999998666432222 68899999999999999999999999987777765543
No 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.87 E-value=0.0038 Score=59.33 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
...+..|...+..|+|.+|+..++.++...|.+ ..+.+.++.||...|+.++|+..|+.....+|+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 445566777788888888888888888766553 5677788888888888888888888877455543
No 84
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.86 E-value=0.0033 Score=54.58 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--------CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--------TFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--------S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~ 235 (344)
++|...+..|...+..|+|..||+.+..++...|.+ .+.-..+-..++.||...|+.++||..|.....-
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999977752 1112237788999999999999999999998856
No 85
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.86 E-value=0.0022 Score=59.83 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAAD 247 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP-d~qVRqQAK~ 247 (344)
...+..|...+..|+|.+|+++++.++...|. ..++.+.++.||...|+.++|+..++......| ++.++..-..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556778888999999999999999986543 367888999999999999999999988775676 4555555444
Q ss_pred HHhhh
Q 019243 248 LRYIL 252 (344)
Q Consensus 248 LLyIL 252 (344)
++..+
T Consensus 350 ~~~~~ 354 (370)
T 1ihg_A 350 VKQKI 354 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.86 E-value=0.0086 Score=48.11 Aligned_cols=66 Identities=11% Similarity=-0.042 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|+++|+.++...|. ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 45778899999999999999999999987654 3578889999999999999999999998855554
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.84 E-value=0.0039 Score=51.54 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|++.|+.++. .+.+...-..+-+.++.+|...|+.++|+..++.....+|+
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 345566667777777777777777766 44444445666677777777777777777777776645554
No 88
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.83 E-value=0.012 Score=43.50 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+..|+|.+|+++++.++...+. ....-..+...++.+|...|+.++|+..++...
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456777888999999999999999998875542 222335677788899999999999998887765
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.82 E-value=0.0094 Score=48.95 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
+...+..|...+..|+|.+|+.+|+.++...|.+ ..+...++.+|...|+.++|+..++.....+|+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 4456778889999999999999999999876653 47888999999999999999999999886777765
No 90
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.82 E-value=0.011 Score=55.03 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI 226 (344)
++..+..|...+..|+|.+|++.|+.+++..|. ...+...|+.++...|+.++|.
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~----~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999999987664 3578888999999888887765
No 91
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.80 E-value=0.011 Score=46.77 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALer-G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+.. |+|.+|+.+++.++. .+..+....+...++.+|...|+.++|+..++.....+|+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345556666677 777777777777666 2233444566666777777777777777777666544554
No 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.78 E-value=0.0065 Score=49.78 Aligned_cols=60 Identities=12% Similarity=-0.131 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+..|...+..|+|.+|+++|+.++...+. ...+.+.++.+|...|+.++|+.+++.+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445566666666666666666666665432 24556666666666666666666666665
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.77 E-value=0.009 Score=53.12 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+...++.+|...|+.++|+.+++......|+..
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4456777888999999999999999998876543 57888899999999999999999999886667654
No 94
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.75 E-value=0.01 Score=48.81 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|+.+|+.++...|. ...+...++.+|...|+.++|+.+++.....+|+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 344566666666777777777777776665443 2456666666677777777777776666644553
No 95
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.75 E-value=0.006 Score=54.26 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+..|...+..|+|.+|+.+|+.++...|.+...-.++...++.+|...|+.++|+.+|+.....+|+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3346666666666666666666666555433333455566666666666666666666665434553
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.74 E-value=0.0077 Score=53.01 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH---HHHHHHHHHHhhh
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYIL 252 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~---qVRqQAK~LLyIL 252 (344)
...+++|++..|++.|+.+++..| -...+++.|+.+|...|+.++|+..++.+...+|+. .++..--.++..+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCC----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 334444455555555555555433 346899999999999999999999999999888874 4555444444433
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.73 E-value=0.01 Score=46.90 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=48.7
Q ss_pred HHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 169 QLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 169 ~~~leaG~a-ALerG~Y--~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
...+..|.. .+..|+| ..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..++.+...+|+.
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 345566776 6678888 88888888888765532 4677778888888888888888887776566654
No 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.72 E-value=0.013 Score=46.37 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK 239 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatA-YeA~Gq~--ekAIALCq~L~~~HPd~ 239 (344)
...+..|...+..|+|..|+.+|+.++...|.+ ..+...++.+ |...|+. ++|+.+++.....+|+.
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999999999987753 5678889999 8899998 99999999988677763
No 99
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.71 E-value=0.022 Score=46.60 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+++|+.++...|. ...+.+.++.+|...|+.++|+.+++.....+|+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRN----QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4455566667777777777777776665443 2456666777777777777777777766644443
No 100
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.69 E-value=0.0086 Score=48.26 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+++|+.++...+. ...+.+.++.+|...|+.++|+..++.....+|+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEN----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4455566666666666666666666654432 2345556666666666666666666665544443
No 101
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.68 E-value=0.011 Score=43.58 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+++++.++.... .....-..+...++.+|...|+.++|+..+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55677889999999999999999999997543 2234456788999999999999999999998765
No 102
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.66 E-value=0.029 Score=50.81 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC-IALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA-IALCq~L~ 233 (344)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+...|+.+|...|+.++| ..+|+.+.
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN----KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999999999999999987653 47899999999999999999 67888876
No 103
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0036 Score=57.03 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 165 ~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S---~lGG----------EaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
...+...+..|..++.+|+|.+|+..++.++...+.+. ..|- .+.+.++.+|...|+.++|+..|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34456688899999999999999999999998776432 1111 3788899999999999999999998
Q ss_pred HHhhCCC
Q 019243 232 LESNHPS 238 (344)
Q Consensus 232 L~~~HPd 238 (344)
....+|+
T Consensus 256 al~~~p~ 262 (338)
T 2if4_A 256 VLTEEEK 262 (338)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 8767774
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.64 E-value=0.0088 Score=51.52 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|+.+|+.++...|. ...+...++.+|...|+.++|+..++.....+|+
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34555666677777777777777776665443 2456666777777777777777777766644444
No 105
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.62 E-value=0.016 Score=46.65 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|..|+++|+.++...+. ...+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 344567788899999999999999999987654 3578899999999999999999999998766664
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.62 E-value=0.0093 Score=47.87 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+..|+.++...|.. ....+...|+.+|...|+.++|+..|+...
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4567788999999999999999999988876642 224678888999999999999999998765
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.57 E-value=0.02 Score=45.12 Aligned_cols=88 Identities=9% Similarity=-0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNI 241 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~HPd~qV 241 (344)
.+...+..|...+..|+|.+|+.+|+.++........ .-..+...++.+|...|+.++|+..+++.. ..+.++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 185 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3556778899999999999999999999975442222 234556899999999999999998887543 35667766
Q ss_pred HHHHHHHHhhhcC
Q 019243 242 RRQAADLRYILQA 254 (344)
Q Consensus 242 RqQAK~LLyILEA 254 (344)
.-.+...+..+..
T Consensus 186 ~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 186 VNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHhcccchhh
Confidence 6666666665543
No 108
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.57 E-value=0.011 Score=49.39 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|++.|+.++...|. ...+...++.+|...|+.++|+..++.....+|+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455566667777777777777776665433 2456666677777777777777777766644443
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.55 E-value=0.026 Score=45.79 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~----~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+..|+|.+|+++|+.++.. .+..++.-..+...|+.+|...|+.++|+.+++...
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3556778899999999999999999999986 334467778999999999999999999999999887
No 110
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.52 E-value=0.002 Score=48.53 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 180 erG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..|+|.+|+.+|+.+++.. ...|....+.+.|+.+|...|+.++|+..+++....+|+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4699999999999999853 2245667899999999999999999999999988788864
No 111
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.49 E-value=0.015 Score=50.72 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3455667888888999999999999998876543 5678888999999999999999998877677763
No 112
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.0078 Score=50.47 Aligned_cols=60 Identities=3% Similarity=-0.089 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP 237 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-q~ekAIALCq~L~~~HP 237 (344)
.+...+..|+|.+|+.+++.++...|. ...+.+.++.+|...| +.++|+..++......|
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 122 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPS----NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT----STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 444555555555555555555554332 1345555556666666 55666666655553333
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.45 E-value=0.024 Score=53.05 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l-GGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~ 247 (344)
...|-.|.++-..|++.+|+.+|+.+.... ..|. ...+++.+++|+...|+.++|+++++.+...+|+ ..+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~----~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE----PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC----HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----HHHHH
Confidence 356888999999999999999999988421 1133 6789999999999999999999999999988988 44555
Q ss_pred HH
Q 019243 248 LR 249 (344)
Q Consensus 248 LL 249 (344)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 114
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.45 E-value=0.02 Score=49.34 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|+.+|+.++...|.+ ..+...++.+|...|+.++|+..|+.....+|+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4456677899999999999999999999875543 578889999999999999999999998756665
No 115
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.38 E-value=0.024 Score=47.41 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+.+|+.++...|. ...+...++.+|...|+.++|+..++.....+|+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 4678899999999999999999999987654 4578889999999999999999999998867774
No 116
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.02 Score=47.91 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-----FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S-----~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|+.+|+.++...+... +....+...++.+|...|+.++|+..++.....+|+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 4456678888888888888888888887543211 333567788888888888888888888887755554
No 117
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.31 E-value=0.019 Score=44.27 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~---Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+-.++ ..+|..+|+.+++.-| ...++.+.|+.+|...|+.++||..++.+....|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777765554 8999999999999554 45789999999999999999999999999866665
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.29 E-value=0.028 Score=44.26 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~---~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+...+..|...+..|+|.+|+++++.++.... .....-+.+...++.+|...|+.++|+..+++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455678889999999999999999999998633 2222557788899999999999999999988764
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.27 E-value=0.017 Score=50.59 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GG--EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~l-GG--EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
+...+..|...+..|+|.+|+++|+.++...+.+... .+ .+-+.++.+|...|+.++|+..|+.-..-+|+..-...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3446677999999999999999999999977655432 12 35677889999999999999999997744555443333
Q ss_pred HHHH
Q 019243 245 AADL 248 (344)
Q Consensus 245 AK~L 248 (344)
++.+
T Consensus 238 ~~~l 241 (292)
T 1qqe_A 238 SNFL 241 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 120
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.27 E-value=0.04 Score=52.32 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAI-ALCq~L~ 233 (344)
+...|..|...+..|+|.+|+..|+.++...|.+. .+...|+.+|...|+.++|. .+|+.+-
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK----AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999766543 68888999999999988776 5666554
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.23 E-value=0.12 Score=41.99 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~ 235 (344)
..+...+..|...+.+|+|.+|+++|+.++... ...++....+...++.+|...|+.++|+.++++....
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999764 3445677899999999999999999999999988733
No 122
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.23 E-value=0.018 Score=59.47 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.|+.+++..|. ..++...|+.+|...|+.++|+..|++....+|+.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456777899999999999999999999997654 36889999999999999999999999887678764
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.20 E-value=0.02 Score=54.53 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+++|+.+++..|.+ ..+...|+.+|...|+.++|+..+++....+|+.
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4567778999999999999999999999976643 6788999999999999999999999988677753
No 124
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.19 E-value=0.028 Score=49.91 Aligned_cols=64 Identities=8% Similarity=-0.061 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qV 241 (344)
...+..|...+..|+|.+|++.|+. +...++.+.++.+|...|+.++|+..++.+...+|+.-.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 165 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL 165 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence 3567788889999999999998887 234578888899999999999999999888877887643
No 125
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.18 E-value=0.021 Score=50.32 Aligned_cols=66 Identities=24% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+.+|+|.+|++.|+.++...|.+ ..+.+.++.+|...|+.++|+..++.....+|+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345666777777777777777777777654432 345566666666666666666666665545554
No 126
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.17 E-value=0.042 Score=54.33 Aligned_cols=68 Identities=6% Similarity=-0.092 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.++......|.....+|+|.+|+.+++.+++ ..++++|.-+..-.-|+.+|..+|+.++|+.+|++-.
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566777888899999999999999999885 5788899999999999999999999999999988643
No 127
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.16 E-value=0.093 Score=43.49 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~----~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+..|+|.+|+++|+.++... ....+....+...++.+|...|+.++|+.+++...
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35567778999999999999999999998763 23366777899999999999999999999999988
No 128
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.026 Score=46.88 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~----~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+.+|+|.+|+.+|+.++.... ...+.-..+...++.+|...|+.++|+.+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345678889999999999999999999998532 2456678899999999999999999999999887
No 129
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.018 Score=51.19 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG-------------EIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG-------------EaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
..++.|..++.+|+|.+|++.+..++...+..+.... ++-..|+.+|...|+.++|+.+++.+..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999987775543221 4567899999999999999999988763
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.09 E-value=0.029 Score=53.53 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~---Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+++|+.+++..|.+ ..+...++.+|... |+.++|+..+++....+|+.
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 4567788999999999999999999999976643 57889999999999 99999999999988677765
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.05 E-value=0.014 Score=51.42 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG--GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~q 240 (344)
+...+..|...+..|+|.+|+++|+.++...+.+.... ..+.+.++.+|...|+.++|+..|++.. .+|+..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 45566778999999999999999999998765433322 3456677788889999999999999987 777543
No 132
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.03 E-value=0.073 Score=42.27 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCC-HHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPS-KNIRRQA 245 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIAL-Cq~L~~~HPd-~qVRqQA 245 (344)
+..-+..|...+..|+|.+|+..|+.+++..|. ...+-+.|+.+|...|+.++|+.. +++..+-+|+ +.+-+--
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 456778899999999999999999999997664 357889999999999999877654 5544437885 4444333
Q ss_pred HHH
Q 019243 246 ADL 248 (344)
Q Consensus 246 K~L 248 (344)
.+|
T Consensus 141 ~~l 143 (150)
T 4ga2_A 141 EQL 143 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.03 E-value=0.028 Score=54.10 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|++.++.+++..|. ...+...++.+|...|+.++|+..+++....+|+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456778899999999999999999999987553 36788999999999999999999999987677754
No 134
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.02 E-value=0.033 Score=55.01 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 164 ~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
....++..++.+..+..+|+|.+|+.+++.+++ ...++.+.-..+.-.|+.+|..+|+.++|+.+|++..
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344555677778888899999999999999986 3456777788999999999999999999999998754
No 135
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.97 E-value=0.02 Score=52.09 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|+.+|+.++...|. ...+.+.++.||...|+.++|+..++......|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999999997654 3688999999999999999999999998744554
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.91 E-value=0.0038 Score=60.06 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|..++.+|+|.+|+++++.+++..|.+ ..+...++.+|...|+.++|+..|++....+|+.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4445667888899999999999999999986653 6888999999999999999999999988677753
No 137
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.84 E-value=0.05 Score=49.40 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
...+..|...+..|+|.+|++.|+.++...|.+ ..+...++.+|...|+.++|+.+|+.....+|+
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345566777777778888888777777765442 366777777788888888888877777655655
No 138
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.77 E-value=0.12 Score=43.48 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+. .|+|.+|+.+|+.++..- ...+...|+.+|.. .|+.++|+..++... ...++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~ 110 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA 110 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence 4456667777777 888888888888877652 35777788888888 888888888888877 55555
Q ss_pred HHHHH
Q 019243 240 NIRRQ 244 (344)
Q Consensus 240 qVRqQ 244 (344)
...-.
T Consensus 111 ~a~~~ 115 (273)
T 1ouv_A 111 EGCAS 115 (273)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 54433
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.76 E-value=0.024 Score=49.87 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+.+|+.++...|. ...+...++.+|...|+.++|+..|+.....+|+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 345788899999999999999999999987664 35788899999999999999999999987566653
No 140
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.76 E-value=0.035 Score=48.51 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALer-G~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+......|.....+ |+|.+|+++++.++...+.... .-..+...++.+|...|+.++|+..|+.....+|+.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 44566778888886 9999999999999997764322 224677889999999999999999999988556654
No 141
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.69 E-value=0.042 Score=56.67 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...++.|+|.+|++.++.+++..|. ..++...|+.+|...|+.++|+..|++....+|+.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 556778899999999999999999999997654 36888999999999999999999999877678763
No 142
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.064 Score=47.26 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|++.|+.++...|. ...+...++.+|...|+.++|+.+++.....+|+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 4456677778888888888888888775443 2456777888888888888888888877656664
No 143
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.63 E-value=0.063 Score=47.23 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
...+..|...+..|+|.+|+++|+.++...+.. ...-..+...++.+|...|+.++|+..++...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778889999999999999999998865532 22335777889999999999999999988765
No 144
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.61 E-value=0.063 Score=44.30 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+.+|+.++...+.. ...-..+...++.+|...|+.++|+..+++..
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4467778888999999999999999988755432 33346777888999999999999999888765
No 145
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.086 Score=47.26 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=62.0
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHH
Q 019243 170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (344)
Q Consensus 170 ~~leaG~aALe---rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK 246 (344)
..+..|...+. .|+|.+|+.+|+.++...|. ...+.+.++.+|...|+.++|+..++.....+|+..-...+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPR----SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 56777888899 99999999999999987653 357889999999999999999999999887888865554444
Q ss_pred H
Q 019243 247 D 247 (344)
Q Consensus 247 ~ 247 (344)
.
T Consensus 490 ~ 490 (514)
T 2gw1_A 490 T 490 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.57 E-value=0.045 Score=47.46 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT---IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~---~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+.+++.++. ..+........+-..++.+|...|+.++|+..|++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566789999999999999999999994 4443333344788999999999999999999998866
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.55 E-value=0.13 Score=44.33 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|...+..|+|.+|+++|+.++...+.. ...-..+...++.+|...|+.++|+..+++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556778999999999999999999998754432 33346788899999999999999999988754
No 148
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.03 Score=49.65 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCC------------------chHHHHHHHHHHHHHcCChHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTF------------------FGGEIQIWLAMAYEANNRHADCI 226 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~------------------lGGEaQmwLatAYeA~Gq~ekAI 226 (344)
++..+=-|...|.+|+|++|...|..++.. ++.++. .-.+++..++.||...|+.++||
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 556778899999999999999999998652 222211 11379999999999999999999
Q ss_pred HHHHHHHhhCCCHHH
Q 019243 227 ALYKQLESNHPSKNI 241 (344)
Q Consensus 227 ALCq~L~~~HPd~qV 241 (344)
++-+.+-.+...|.|
T Consensus 143 ~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 143 AILDGIPSRQRTPKI 157 (167)
T ss_dssp HHHHTSCGGGCCHHH
T ss_pred HHHhcCCchhcCHHH
Confidence 997766434444444
No 149
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.49 E-value=0.034 Score=55.66 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..+..|...+..|+|.+|++.|+.+++..|.+ ..+.+.|+.+|...|+.++ +..|++....+|+
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 34445555555555555555555555544432 3445555555555555555 5555554434443
No 150
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.43 E-value=0.16 Score=48.25 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA 245 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~-------~HPd~qVRqQA 245 (344)
+.+...+..|+|.+++..|..++...|.+ -.+.-.|..||.++|+..+|+..|+.+.. --|.++++..-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34567789999999999999999977763 35788899999999999999999998762 15899999888
Q ss_pred HHHHhh
Q 019243 246 ADLRYI 251 (344)
Q Consensus 246 K~LLyI 251 (344)
+++|..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 887754
No 151
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.25 E-value=0.08 Score=49.06 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+..|+|.+|+++|+.++...|. ...+...|+.+|...|+.++|+.+++++...+|+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN----DANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 345566788889999999999999999987653 35888999999999999999999999988778864
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.25 E-value=0.075 Score=47.50 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+.+|+|.+|+++|+.++.... ..++....+...|+.+|...|+.++|+..+++..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455677789999999999999999999988443 2345568899999999999999999999998876
No 153
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.22 E-value=0.06 Score=51.98 Aligned_cols=65 Identities=5% Similarity=-0.028 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~----~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+..+.....+..+|+|.+|+++++.+++. .+++.+.-..+--.|+.+|..+|+.++|+.+|++..
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34556666788999999999999999863 456777778999999999999999999999999776
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.023 Score=40.60 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~--lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
+...+..|...+..|+|.+|++.|+.++...|.+.. ....+.+.++.+|...|+.+.|+..++.+
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 345778899999999999999999999997765421 23678889999999999988887665544
No 155
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.19 E-value=0.091 Score=51.12 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...++.+..+-..|+|.+|+.+++.+++ ...++.+.-..+--.|+.+|..+|+.++|+.+|++..
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44566777777788999999999999986 3556777778888999999999999999999998865
No 156
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.18 E-value=0.25 Score=43.88 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.|...+.+|+|.+|+.+|+.++.... ...+.-+.+-..++.+|...|+.++|+..+++-.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998643 2233457888999999999999999999988754
No 157
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.16 E-value=0.14 Score=45.58 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CC-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PT-FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~-~S-~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.+...+..|...+..|+|..|+++|+.++..... .. +....+...|+.+|...|+.++|+..+++..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456778899999999999999999999985432 22 5568899999999999999999999988765
No 158
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.12 E-value=0.045 Score=51.99 Aligned_cols=66 Identities=20% Similarity=0.088 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---------NRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~---------Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+.+|+|.+|++.|+.++...|. ..+...|+.+|... |+.++|+..|++....+|+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 445677899999999999999999999987644 48999999999999 9999999999998877877
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.07 E-value=0.091 Score=45.51 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRH-ADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~-ekAIALCq~L~ 233 (344)
..+...+..|...+.+|+|.+|+++++.+++..+.. ...-+.+-..++.+|...|+. ++|+..|++-.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 345567888999999999999999999999865432 334478899999999999965 99998887654
No 160
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.07 E-value=0.16 Score=44.60 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~----~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
+...+..|...+.+|+|.+|+++++.++...+. .++....+...++.+|...|+.++|+..|+.....++
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 334567788999999999999999999875532 1345567788899999999999999999988663444
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.05 E-value=0.21 Score=43.22 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHhhCCCHHHH
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR 242 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekA-IALCq~---L~~~HPd~qVR 242 (344)
...+..|...+.+|+|.+|+.+++.++.... .....-+.+-..++.+|...|+.++| +..++. +.....+....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence 4667889999999999999999999997543 22233478888999999999999999 543433 33456677776
Q ss_pred HHHHHHHhhhc
Q 019243 243 RQAADLRYILQ 253 (344)
Q Consensus 243 qQAK~LLyILE 253 (344)
+.-..++.-||
T Consensus 277 ~~~~~~~~~~~ 287 (293)
T 2qfc_A 277 EALVNKISRLE 287 (293)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 65555555554
No 162
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.04 E-value=0.076 Score=51.68 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.++......|.....+|+|.+|+.+++.+++ ..++++|.-+..-.-|+.+|..+|+.++|+.++++-.
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3466677788899999999999999999885 6788899999999999999999999999999988644
No 163
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.03 E-value=0.33 Score=42.00 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 167 ~a~~~leaG~aALerG---~Y~qAIelLE~a~~~~~~~S~-lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
..+..|+-|....... ++.++|.+|+.++... +| .--+.-+.|+.+|...|+.++|+..|+.+....|+-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n--- 104 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN--- 104 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Confidence 3567888888888877 8889999999999865 12 335788999999999999999999999999777765
Q ss_pred HHHHHHHhhhcC
Q 019243 243 RQAADLRYILQA 254 (344)
Q Consensus 243 qQAK~LLyILEA 254 (344)
.||+.|+..++.
T Consensus 105 ~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 105 NQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466666666654
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.96 E-value=0.056 Score=46.79 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~-------~~~~S~lGGEaQ----mwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.-+..|......|+|.+||..++.+++. .|. ...+- .-+..||.+.|+.++||..|+.-.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 5778899999999999999999999997 553 34555 889999999999999999999877
No 165
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.90 E-value=0.12 Score=45.27 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH--HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG--EIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGG--EaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
.+..|...+.+|+|.+|+++|+.++...+......+ .+...++.+|...|+.++|+.+|+....
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566677777777777777777776665433333 2345677777888888888888888774
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.89 E-value=0.11 Score=43.49 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI 241 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G----q~ekAIALCq~L~~~HPd~qV 241 (344)
.-+...+..|...+..|+|.+|+++|+.+++.- ...++..|+..|.. | +.++|+.+++... ...++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence 446678888999999999999999999988742 24888999999998 6 8999999999987 6666654
Q ss_pred H
Q 019243 242 R 242 (344)
Q Consensus 242 R 242 (344)
.
T Consensus 88 ~ 88 (212)
T 3rjv_A 88 E 88 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.66 E-value=0.099 Score=50.46 Aligned_cols=67 Identities=6% Similarity=0.007 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT----IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~----~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
.++...-..|.....+|+|.+|+.+++.+++ ..++.+|.-+..-+-|+.+|..+|+.++|+.++++-
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3466677788888999999999999998885 578999999999999999999999999999988764
No 168
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.61 E-value=0.37 Score=40.40 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 019243 167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 167 ~a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd 238 (344)
.+...+..|...+. .|+|.+|+.+|+.++..- ...+.+.|+.+|.. .|+.++|+..++... ...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~~ 145 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLND 145 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcCc
Confidence 45667888999999 999999999999999852 46899999999999 999999999999998 5555
Q ss_pred HHHHH
Q 019243 239 KNIRR 243 (344)
Q Consensus 239 ~qVRq 243 (344)
+...-
T Consensus 146 ~~a~~ 150 (273)
T 1ouv_A 146 GDGCT 150 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 169
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.41 E-value=0.15 Score=45.56 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
..+...+..|...+..|+|.+|+++|+.++.... .....-+.+...|+.+|...|+.++|+..+++...
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455677889999999999999999999998544 23345567888899999999999999999998873
No 170
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.37 E-value=0.37 Score=44.63 Aligned_cols=67 Identities=21% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~l-GGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+..|...+..|+|.+|+++|+.++...+ ...+. ...+...|+.+|...|+.++|+.+++.+...+|
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34455666666777777777777665432 11222 255666667777777777777777766554455
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.37 E-value=0.17 Score=43.76 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~---~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
.....|...+..|+|.+|+.+++.++.. .+...+.-..+-..++.+|...|+.++|+..|++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667789999999999999999999963 334455566788899999999999999999888655
No 172
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.33 E-value=0.19 Score=44.50 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCC
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPS 238 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ek-AIALCq~L~~~HPd 238 (344)
..|...+..|+|.+|++.|+.++...|. ..++-..++.+|...|+..+ |..+++++...+|+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSG----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 3444444555555555555555443322 22334444445555555443 23444433334443
No 173
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.29 E-value=0.14 Score=48.18 Aligned_cols=68 Identities=3% Similarity=-0.030 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~-Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+..-+..|...+..|+ |.+|++.|+.++...|. ..++-..++.+|...|+.++||..|++.....|+.
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 3455677888889996 99999999999987665 35677888889999999999999999888666654
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.24 E-value=0.28 Score=42.46 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHH
Q 019243 168 AQLMFELGQKAYGKGM----------YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCI 226 (344)
Q Consensus 168 a~~~leaG~aALerG~----------Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-----------q~ekAI 226 (344)
++..+..|...++.|+ |.+||..|+.+++.-|. -.++...|..||...| +.++||
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 3344555555555554 56999999999997765 4578889999998774 899999
Q ss_pred HHHHHHHhhCCCHHHHHHHHHH
Q 019243 227 ALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 227 ALCq~L~~~HPd~qVRqQAK~L 248 (344)
..|++-..-.|+...-+.|..+
T Consensus 112 ~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 112 QFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999877789987766666544
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.05 E-value=0.099 Score=45.98 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S--~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
+......|..... |+|.+|+++++.++...+... ..-..+...++.+|...|+.++||..|++...
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666776666 999999999999998766432 23357778899999999999999999998773
No 176
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.00 E-value=0.082 Score=52.90 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+..|+|.+|++.|+.+++..|.+ .++...++.+|...|+.++|+..+++.....|+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445666666666666666666666666644432 456666666666666666666666665545553
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.89 E-value=0.33 Score=45.99 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.+-.|...+..|+|.+|+++|...+...+ +....++++.+|.+|...||.+.|..+.+.+...+|
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 35678888889999999999999877444 356789999999999999999999999999987788
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.88 E-value=0.092 Score=49.08 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
..|-.|..+++.|+|.+|+.+|+++....++ .....+.++|.+||...|+.++|+..|++-. .-|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~--~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~ 202 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK--FLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA 202 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc--ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence 3577888999999999999999976553311 1346799999999999999999999999997 5554
No 179
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.73 E-value=0.22 Score=38.19 Aligned_cols=48 Identities=10% Similarity=-0.099 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAY 216 (344)
....+-.|..+|++|+|.+||.+++.+++..|. ++-...++-.+..|.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence 455777899999999999999999999998888 777666665555554
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.70 E-value=0.41 Score=37.92 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 019243 166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP 237 (344)
Q Consensus 166 e~a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HP 237 (344)
.-+...+..|..-+. .++|.+|+++|+.+++.- ...++..|+..|.. .++.++|+..++.-. ...
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g 127 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG 127 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence 445667888888888 899999999999999852 25899999999999 899999999999988 666
Q ss_pred CHH
Q 019243 238 SKN 240 (344)
Q Consensus 238 d~q 240 (344)
++.
T Consensus 128 ~~~ 130 (138)
T 1klx_A 128 SED 130 (138)
T ss_dssp CHH
T ss_pred CHH
Confidence 664
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.2 Score=44.45 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+...+..|..-+++|+|.+|+.+|..+...+. ...+.-.++.+.++.+|...|+.++|+.++++..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 55677889999999999999999999887544 2345566888999999999999999999987654
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.56 E-value=0.13 Score=38.01 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
..|++.|+.++...|. ...+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus 2 ~~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 2 QAITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CCHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 3578899998886554 35789999999999999999999999988677764
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.28 E-value=0.4 Score=32.86 Aligned_cols=48 Identities=29% Similarity=0.473 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G 220 (344)
...+..|...+..|+|.+|+.+|+.++...|. ...+...++.+|...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcC
Confidence 34677899999999999999999999997654 3577888888887765
No 184
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.14 E-value=0.4 Score=46.88 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
..|..++-+|++.+|+++|+.++..-+ + -.+-+.+..+|.-.|+.++|++.+.+-..-+|...+-.|++.|.+
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~--s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEM--S---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 346667778999999999999999853 2 345578899999999999999999776668999999999988754
No 185
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.10 E-value=0.26 Score=46.43 Aligned_cols=68 Identities=9% Similarity=-0.071 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+..-+..|...+..|+|.+|++.|+.++...|.+ ..+-..++.+|...|+.++||..|+.....+|+.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 4456777999999999999999999999977653 4778889999999999999999999998778864
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=92.57 E-value=1 Score=40.38 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------------------------------------
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------------------------------- 205 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG------------------------------------------- 205 (344)
...+..|...+..|+|.+|++.++.++...|.+....
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3456678888999999999999999998777543221
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 206 ------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 206 ------GEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
..+...++.+|...|+.++|+..+++.....|++...+..
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 1123467888999999999999999876577877665443
No 187
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=92.50 E-value=0.91 Score=42.68 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhh
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyI 251 (344)
+..+. .++.|+|.+|...++.+++..|.+ ..+-+.++..+...|+.++|+.+++.....||+..+ |-..+.++
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l--w~~~~~~~ 89 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL--WKCYLSYV 89 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH--HHHHHHHH
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH--HHHHHHHH
Confidence 33444 367899999999999999977653 456666788888999999999999999878887553 55444333
No 188
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.49 E-value=0.79 Score=39.96 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 181 rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
.|+|.+|+..|+.++...|. ...+-+.++..+...|+.++|+++++....
T Consensus 182 ~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 69999999999999997764 246667778889999999999999999983
No 189
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.37 E-value=0.72 Score=40.23 Aligned_cols=67 Identities=13% Similarity=-0.018 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~--~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.-+..|......|+|.+|+.+|+.++... ++. ....+-..++..+...|+.++|+.+++.....+|+
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~--~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 34455666778899999999999999864 331 12345555678889999999999999998877885
No 190
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.24 E-value=3.7 Score=34.55 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~q---AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
.+..|.-|-......+-.. +|.+|+..+....+ ..--+.-+.||.+|...|+..+|+..|..|...+|+- .|
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~Q 109 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQ 109 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HH
Confidence 5567777777777666555 99999998885311 1334788999999999999999999999999777764 46
Q ss_pred HHHHHhhhc
Q 019243 245 AADLRYILQ 253 (344)
Q Consensus 245 AK~LLyILE 253 (344)
|..|...++
T Consensus 110 A~~Lk~~i~ 118 (126)
T 1nzn_A 110 AKELERLID 118 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 191
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=92.13 E-value=0.46 Score=42.69 Aligned_cols=61 Identities=20% Similarity=0.059 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a~~~~~~-----~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
-.|...+.+|+|.+||+.|+.+++..+. ..+.-..+-.-++.+|...|+.++|+..+++..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4688889999999999999999875331 122223444568999999999999998887765
No 192
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.95 E-value=2.3 Score=35.30 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhCC
Q 019243 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP 237 (344)
Q Consensus 168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-G-----q~ekAIALCq~L~~~HP 237 (344)
+...+..|...+. .++|.+|+.+|+.+++. +.+ ..++..|+.+|... | +.++|+..++.-. ...
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g 198 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG 198 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence 4556777777777 77888888888888876 211 24778888888543 4 7888888888877 555
Q ss_pred CHHHHHH
Q 019243 238 SKNIRRQ 244 (344)
Q Consensus 238 d~qVRqQ 244 (344)
++.-...
T Consensus 199 ~~~A~~~ 205 (212)
T 3rjv_A 199 FDTGCEE 205 (212)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5554433
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=90.68 E-value=1.7 Score=40.31 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCH
Q 019243 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~ 239 (344)
+...+..|...+. .++|.+|+++|+.+++.- ...++..|+..|.. .++.++|+..++... ...++
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~ 147 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRD 147 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence 4556677777777 778888888888777632 24677777777777 677788888887776 45455
Q ss_pred HH
Q 019243 240 NI 241 (344)
Q Consensus 240 qV 241 (344)
..
T Consensus 148 ~a 149 (490)
T 2xm6_A 148 SG 149 (490)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.24 E-value=1.8 Score=41.01 Aligned_cols=74 Identities=23% Similarity=0.153 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------------HHHHHHHHHHHHHcCChHHHH
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------------GEIQIWLAMAYEANNRHADCI 226 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lG-------------------GEaQmwLatAYeA~Gq~ekAI 226 (344)
..++..+..|..+...|+...|++.|+.|++..... .+. ..+...++.++.+.|++++|+
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 446778888999999999999999999999877532 111 134456788899999999999
Q ss_pred HHHHHHHhhCCCHH
Q 019243 227 ALYKQLESNHPSKN 240 (344)
Q Consensus 227 ALCq~L~~~HPd~q 240 (344)
..|+.|...||-.+
T Consensus 192 ~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 192 AELEALTFEHPYRE 205 (388)
T ss_dssp HHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 99888887999655
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.72 E-value=1.8 Score=40.26 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 168 a~~~leaG~aALe----rG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd 238 (344)
+...+..|...+. .++|.+|+.+|+.+++.- ...++..|+.+|.. .|+.++|+..|+.-....|+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4456777777777 899999999999988743 25789999999998 89999999999988856654
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.20 E-value=0.16 Score=36.15 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+..|...+..|+|.+|++.|+.++...|.+.... .+ +...+|+..+++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------HHHHHHHHHHHHHh
Confidence 567889999999999999999999999877644322 11 55566666665544
No 197
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.64 E-value=1.2 Score=45.73 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LL 249 (344)
....+ .||..|++..|..+|+.... ....-.+.+.|++.|+++.|+.++|..+++.|. ++. .---.-|.+-|
T Consensus 289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~~-~fYg~lAa~~L 360 (618)
T 1qsa_A 289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQR-GFYPMVAAQRI 360 (618)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSC-SHHHHHHHHHT
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cCC-ChHHHHHHHHc
Confidence 35555 58899999999999977443 223357899999999999999999999999998 543 33334444444
No 198
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.54 E-value=1.6 Score=37.44 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHH
Q 019243 168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (344)
Q Consensus 168 a~~~leaG~aALerG---~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQ 244 (344)
.+..|.-+-..+... +...+|.+|+..+...+ ..--+--+.||.+|...|+..+|...|..|....|+- +|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N---~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQ 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC---HH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC---HH
Confidence 455666666666544 45689999999998543 1235788999999999999999999999999556654 46
Q ss_pred HHHHHhhhc
Q 019243 245 AADLRYILQ 253 (344)
Q Consensus 245 AK~LLyILE 253 (344)
|+.|...++
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=87.20 E-value=0.13 Score=48.45 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH---ADCIALYKQLE 233 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~---ekAIALCq~L~ 233 (344)
.|..++++|+|.+|+++|+.+++.-. ..+++.|+..|...|+. ++|+.+|+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~ 65 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAA 65 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC------CTGGGTCC-----------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45555555555555555555544321 13334444444445555 45555554444
No 200
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=86.27 E-value=3.2 Score=39.00 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=44.8
Q ss_pred cCCHH-------HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 181 rG~Y~-------qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
.|++. .|++.|+.+++...+ -...+.+.++..|...|+.++|+.+|+......|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p---~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 79987 999999999973322 23678888889999999999999999998855554
No 201
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.50 E-value=3.3 Score=35.94 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243 167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 167 ~a~~~leaG~aALerG~---Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRq 243 (344)
..+..|+-+-......+ -..+|.+||..+...|.. --+--++||.+|...|+..+|...|..|....|+- +
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~ 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---K 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---H
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---H
Confidence 35566777766666554 457999999998855432 34678999999999999999999999999677764 4
Q ss_pred HHHHHHhhhcC
Q 019243 244 QAADLRYILQA 254 (344)
Q Consensus 244 QAK~LLyILEA 254 (344)
||+.|...++.
T Consensus 112 QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 112 QVGALKSMVED 122 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 202
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=84.42 E-value=3.7 Score=33.94 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=44.1
Q ss_pred cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 019243 75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR 149 (344)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r 149 (344)
.||.||+.-+.+|= --|--.+.++.|++.|+.+|++.. ++.+..-++..+ +++-++-=. .+.-.++|.-
T Consensus 6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a 79 (100)
T 2xrh_A 6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA 79 (100)
T ss_dssp CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence 58999975544443 345556778899999999999864 334443333333 333333222 2333455555
Q ss_pred HHHHHHH
Q 019243 150 VRRELEK 156 (344)
Q Consensus 150 v~~~le~ 156 (344)
|+..|++
T Consensus 80 I~eal~k 86 (100)
T 2xrh_A 80 VKEALKK 86 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 203
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=82.99 E-value=7.7 Score=30.13 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
..++..|..++..... .++...+.|+...|. .+|+.....+. +++++.||..|...|.
T Consensus 72 ~~a~~~L~~~L~d~~~------~VR~~A~~aL~~~~~-~~a~~~L~~~l-~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSG------FVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHCCT------HHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCH------HHHHHHHHHHHHhCc-HHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 5678888887764333 899999999999985 56776666666 6999999999988765
No 204
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.83 E-value=3.1 Score=36.84 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP--RP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~--~~---S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..++..+.++++|.|..|+-+..-+++..+ +. -..--++.+|++-+|-+.|+..+|...|++-.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 468889999999999999998888776442 21 12345788999999999999999999998854
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=80.95 E-value=2.4 Score=31.05 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 019243 203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (344)
Q Consensus 203 ~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd 238 (344)
|....+.+.|+.+|...|+.++|+..++.....+|+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 39 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD 39 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 445678899999999999999999999998867776
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.50 E-value=12 Score=35.41 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=27.5
Q ss_pred HHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 178 AYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 178 ALerG--~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
.|-+| +|..|+.+|+.++...|. -.-..+.+. +|+..|+.++|-.+.+.|.+.+|
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence 44444 666666666665544331 011223333 66666666666666665553333
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=78.18 E-value=6.3 Score=30.93 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCHHHH
Q 019243 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 174 aG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA----~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
.|...+..+.+.+|+++|+.+++.- ...++..|+.+|.. .++.++|+..++.-. ...++...
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~ 96 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGC 96 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHH
Confidence 6777777788999999999999852 35899999999998 899999999999998 66666543
No 208
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.89 E-value=5.4 Score=33.69 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
-..+-||+|++|..++++.| . --+-=|+|.|--..|-..++-.=--.|. ...+|+.++.|.-+...+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c--~-------pdlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 114 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA--Y-------PDLEPWLALCEYRLGLGSALESRLNRLA-RSQDPRIQTFVNGMREQL 114 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC--C-------GGGHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC--C-------chHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45688999999999999977 2 2456799999999999999988777888 899999999999887654
No 209
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=75.77 E-value=5.5 Score=40.81 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH-------HHHHHHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC-------IALYKQLE 233 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA-------IALCq~L~ 233 (344)
+...++.|+.||..|+|+-|.+++.-++..-|.+ .+++-.+|-||+..|...+. ++-+++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~----~~a~~l~a~~~~~l~~~~~~~~~r~~yl~~a~el~ 517 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDN----RAARELQADALEQLGYQAENAGWRNSYLSAAYELR 517 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999865543 58999999999998866543 45556676
No 210
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.68 E-value=5.6 Score=32.62 Aligned_cols=61 Identities=21% Similarity=0.072 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhc
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILE 253 (344)
..++..|..++... ...++...+.|+...|. .+++.....+. .++++.||..|...|.-+.
T Consensus 142 ~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 ERAVEPLIKALKDE------DGWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHhcC
Confidence 34555555544321 13677777777777765 55666666666 5777777777777766554
No 211
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.56 E-value=5.2 Score=33.78 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=57.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 176 ~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
-..+-||+|++|..++++.| . --+-=|+|.|--..|-..++-.=--.|. ...+|+.++.|..+...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c--~-------pdlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 113 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP--W-------PALEPWFALCEWHLGLGAALDRRLAGLG-GSSDPALADFAAGMRAQV 113 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC--C-------GGGHHHHHHHHHHTTCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC--C-------chHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45688999999999999977 2 2456799999999999999988887888 899999999999887654
No 212
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.19 E-value=6.7 Score=31.92 Aligned_cols=62 Identities=21% Similarity=0.077 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
..++..|..++... ...++...+.|+...|. .+++.....+. .++++.||..|...|.-|+.
T Consensus 137 ~~~~~~L~~~l~d~------~~~vr~~A~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ERAVEPLIKALKDE------DGWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 34555555544321 23677777777777765 45666666666 57788888888877776654
No 213
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=74.71 E-value=11 Score=32.87 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHH-HHHHHHHHHcCChHHHHHHHHHHHh---hCCC
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQ-IWLAMAYEANNRHADCIALYKQLES---NHPS 238 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~----S~lGGEaQ-mwLatAYeA~Gq~ekAIALCq~L~~---~HPd 238 (344)
+....|..|...|-.|+|-+|=+.||.+....+.. .-.-|=|| +.-+.-+...|+..-|..|+++-.. .+|.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 34567999999999999999999999999877654 22456677 7777777888999999999876431 3443
Q ss_pred H-------HHHHHHHHHHh
Q 019243 239 K-------NIRRQAADLRY 250 (344)
Q Consensus 239 ~-------qVRqQAK~LLy 250 (344)
. .++.+++.++.
T Consensus 111 ~~~GIDv~~L~~~~~~~l~ 129 (161)
T 2ijq_A 111 DYYGVDLLDVRTTVTNALS 129 (161)
T ss_dssp TGGGBCHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHhh
Confidence 2 45666666643
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.94 E-value=17 Score=35.22 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=17.5
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC----HHHHHHHHHHHhh
Q 019243 216 YEANNRHADCIALYKQLESNHPS----KNIRRQAADLRYI 251 (344)
Q Consensus 216 YeA~Gq~ekAIALCq~L~~~HPd----~qVRqQAK~LLyI 251 (344)
|...|+.++|+.|++++- ++. .-+++||..|...
T Consensus 759 ~~~~~~~~~A~~lA~~~~--~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 759 LIKSQRFSEAAFLGSTYG--LGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHTTCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhc
Confidence 444444444444444332 223 3457888877654
No 215
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.82 E-value=70 Score=31.10 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---hh-CCCHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SN-HPSKNIR 242 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~--~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~-HPd~qVR 242 (344)
....|..-|++|+|.+|+.++......+.. ....=.++.+.-+..|...|+..+|.+++..-. .. +++|.++
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 448899999999999999988888775543 234556899999999999999999998885543 12 2566544
No 216
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.42 E-value=9.8 Score=30.91 Aligned_cols=62 Identities=19% Similarity=0.006 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
..++..|..++... ...+|...+.++...|..+ ++.....+. .++++.||..|-..|..+..
T Consensus 75 ~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 ERAVEPLIKALKDE------DGWVRQSAAVALGQIGDER-AVEPLIKAL-KDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCcHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCC
Confidence 35666666655421 2467777788877777654 333334444 58888888888888877754
No 217
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=66.25 E-value=15 Score=42.45 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 019243 156 KVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (344)
Q Consensus 156 ~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~ 235 (344)
+.|.+-+++......-++.|++-+..|+|.+||..++.+= -...-+-++.+|+..|+.++||..++.-.+.
T Consensus 1093 drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd---------D~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1093 DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466666666667778888999999999999999998851 1233344789999999999999988764433
Q ss_pred CCCH
Q 019243 236 HPSK 239 (344)
Q Consensus 236 HPd~ 239 (344)
.+++
T Consensus 1164 ~~e~ 1167 (1630)
T 1xi4_A 1164 ARES 1167 (1630)
T ss_pred cccc
Confidence 3343
No 218
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.59 E-value=18 Score=27.98 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
.-+....+.|+..+.+|+|..|+.+|-.|+.-++..
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 346678899999999999999999999999987763
No 219
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=64.47 E-value=5.1 Score=34.50 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCHH
Q 019243 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----------ADCIALYKQLESNHPSKN 240 (344)
Q Consensus 182 G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~----------ekAIALCq~L~~~HPd~q 240 (344)
++|.+|++.++.+++..|. ..++.+.+..+|...|+. ++||..|++-.+-.|+.-
T Consensus 16 ~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 5688999999999997765 357777778888888876 599999999886777654
No 220
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=62.87 E-value=14 Score=34.69 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN---RHADCIALYKQLE 233 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G---q~ekAIALCq~L~ 233 (344)
.+..|...+..|.|.+++...+.++.......+. ++..|+.+|...| +.++|+..++...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 3444444444444444444433333322222221 4444444444444 4444444444443
No 221
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=62.38 E-value=8.2 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~ 231 (344)
.|..|...|-.|+|-+|=+.||.+....+.. .-.-|=||+.-+.-+...|+. |..++++
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~ 64 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRK 64 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH
Confidence 4778999999999999999999999877431 224566666666666667777 6666654
No 222
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=61.97 E-value=19 Score=29.49 Aligned_cols=60 Identities=15% Similarity=0.023 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 019243 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (344)
Q Consensus 163 ~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIA 227 (344)
.++..|+..|..+..|+..++|..|-.+.|.+.-.... .+++-..+.+-..+.+.++.|.
T Consensus 29 pEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArL-----AeAka~~~Ka~~~~~el~~~I~ 88 (98)
T 4fm3_A 29 AELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARL-----AESKVLTQKSKDQLGELDKSLK 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999997642111 2333334444444444444443
No 223
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=61.34 E-value=17 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~ 195 (344)
...+.+|+..|+.++..++.|.|..|+-....++
T Consensus 6 ~~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~ 39 (126)
T 2hsb_A 6 ELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAM 39 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4466788999999999999999997765444444
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=59.81 E-value=17 Score=36.28 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 019243 173 ELGQKAYGKGMYGRAIEFLEGA 194 (344)
Q Consensus 173 eaG~aALerG~Y~qAIelLE~a 194 (344)
..|...+.-|+|+.||+....+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc
Confidence 4577777788888888887776
No 225
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.58 E-value=14 Score=30.28 Aligned_cols=62 Identities=21% Similarity=0.070 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
..++..|..++... ...++...+.|+...|..+ ++.....+. .++++.||..|-..|..+..
T Consensus 111 ~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 111 ERAVEPLIKALKDE------DWFVRIAAAFALGEIGDER-AVEPLIKAL-KDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 44666666655321 2367888888887777654 555555555 68888888888888887754
No 226
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=59.25 E-value=57 Score=30.72 Aligned_cols=82 Identities=11% Similarity=-0.029 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHh
Q 019243 167 TAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNR----------HADCIALYKQLES 234 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~-qAIelLE~a~~~~~~~S~l-GGEaQmwLatAYeA~Gq----------~ekAIALCq~L~~ 234 (344)
........-....+.|.|+ +|+++.+.++...|.+... ..+- .++...|+ .++++.+|..+..
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr-----~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR-----EVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHH-----HHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 3344445555566789999 7999999999977764332 1122 22223333 5899999999887
Q ss_pred hCC-CHHHHHHHHHHHhhhc
Q 019243 235 NHP-SKNIRRQAADLRYILQ 253 (344)
Q Consensus 235 ~HP-d~qVRqQAK~LLyILE 253 (344)
.|| ++++=..=.-+|..|.
T Consensus 103 ~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCS
T ss_pred hCCCCHHHHHHHHHHHhccC
Confidence 787 4444333333455444
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=59.03 E-value=4.9 Score=38.91 Aligned_cols=62 Identities=15% Similarity=-0.003 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---------CCCCCCchHHHHHH--------HHHHHHHcCChHHHHHHHHHHH
Q 019243 172 FELGQKAYGKGMYGRAIEFLEGALTI---------IPRPTFFGGEIQIW--------LAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 172 leaG~aALerG~Y~qAIelLE~a~~~---------~~~~S~lGGEaQmw--------LatAYeA~Gq~ekAIALCq~L~ 233 (344)
-+.|+.|++.|+|..|++.+..+-.. ......+.--+++. -..+|...|+.++|+.+|+.+-
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 46688888899998888877763110 00000010111111 3457888999999999999886
No 228
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.87 E-value=28 Score=32.88 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=56.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHH
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQA 245 (344)
....|..|+..+||+.++..+...| .-...|..|+--|+=+|+.++|..=++.+..-+|+....-+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P----~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 4567899999999999999999554 456889999999999999999999999998777776665433
No 229
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=62.97 E-value=2.1 Score=44.43 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekA 225 (344)
+...++.++.+|.+|+|+-|.+++.-++..-|.+ .+++-.+|.||+..|...+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~----~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPAN----KDARALQADAMEQLGYQTEN 514 (668)
Confidence 5678999999999999999999999988755443 47899999999999987765
No 230
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.40 E-value=66 Score=31.13 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---C-CchHHH--------------------------------------
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP---T-FFGGEI-------------------------------------- 208 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S-~lGGEa-------------------------------------- 208 (344)
.++.|-+++..|.+.+|+..|..++..++.. + ....++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 4777889999999999998888877655422 1 111122
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 209 --------------QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 209 --------------QmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
|..|-.|| .+++..-|-.+|+.|....|++++.+||++++..=|.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHF-KHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADS 255 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 11122222 3467788899999999778889999999999988764
No 231
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=55.17 E-value=36 Score=30.12 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH--------------------------------
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-------------------------------- 215 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatA-------------------------------- 215 (344)
.+..+-.+..||-+.+|...|.-|+.+-- ..+.-.++..||.+
T Consensus 8 ~q~a~i~a~~afl~~dYs~VI~~L~~~~~-----~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWI 82 (161)
T 2ynq_A 8 KQEAYIQSTELFLQNKYSDVITTLEDYAP-----EDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWI 82 (161)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTTSCG-----GGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCCh-----hhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHH
Confidence 35677889999999999999999887432 12222444444444
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCHHHHH
Q 019243 216 YEANNRHADCIALYKQLESNHPSKNIRR 243 (344)
Q Consensus 216 YeA~Gq~ekAIALCq~L~~~HPd~qVRq 243 (344)
|-|.|++++|+.+++.|- |+++--
T Consensus 83 yiGRg~~~eAlDiA~~L~----D~qLil 106 (161)
T 2ynq_A 83 YIGRSQSEEALELARTIE----DRDLIV 106 (161)
T ss_dssp HHHHTCHHHHHHHHHHHT----CHHHHH
T ss_pred HHcCCchHHHHHHHHhcC----cHHHHH
Confidence 568899999999999997 666543
No 232
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=54.63 E-value=26 Score=28.35 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 178 ALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
++..+.+..++++|... ..++.+-. ++.. +.=..++ ..|.++||+++|+..|+.|+..+..
T Consensus 24 ~~~~~~~~~~l~~L~~L-~~~~iT~e------~L~~--------T~IGk~V-n~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 24 MVSRKKTEGALDLLKKL-NSCQMSIQ------LLQT--------TRIGVAV-NGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp HHHTTCCSSHHHHHHHH-HTSCCCHH------HHHH--------TCHHHHH-HHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH-hCCCCCHH------HHHH--------cchhHHH-HHHHccCCcHHHHHHHHHHHHHHHH
Confidence 34456788899999885 65665321 1111 1112233 3466345999999999999987755
No 233
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=54.34 E-value=28 Score=26.91 Aligned_cols=59 Identities=17% Similarity=-0.021 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 188 IEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 188 IelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
+..|..++... ...+|...+.|+...|..+ |+.....+. +++++.||..|-..|.-+-.
T Consensus 44 ~~~L~~~L~d~------~~~vR~~A~~aL~~~~~~~-a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 44 FEPLLESLSNE------DWRIRGAAAWIIGNFQDER-AVEPLIKLL-EDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHHGGGCS------CHHHHHHHHHHHGGGCSHH-HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCC------CHHHHHHHHHHHHhcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 55666655421 2489999999999888754 554444455 59999999999999887753
No 234
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=53.73 E-value=48 Score=30.77 Aligned_cols=73 Identities=19% Similarity=0.071 Sum_probs=43.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 175 G~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
|-.-+++|-..+=|..|+.-+..+ .-|=+-....|..+......++.+.|.+.|. +|+.-+||-+|-.+|.-+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~----~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~-~~~~deVR~~Av~lLg~~ 98 (240)
T 3l9t_A 26 GGQQMGRGSMKQYVARLEKDFSLI----EHGFKEEEQRALTDYKSNDGEYIKKLAFLAY-QSDVYQVRMYAVFLFGYL 98 (240)
T ss_dssp --------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHhCCHHHHHHHHHHHH-hCcchHHHHHHHHHHHhc
Confidence 444566666666676666655532 3344666777777777777777888888887 777778888887776655
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=53.65 E-value=36 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 019243 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S 202 (344)
...+..|...++.|+|..|+.+++.++...|.+.
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3457789999999999999999999999877653
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=53.18 E-value=94 Score=29.68 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC----H-----HHHHHHHHHHhh
Q 019243 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPS----K-----NIRRQAADLRYI 251 (344)
Q Consensus 182 G~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-Gq~ekAIALCq~L~~~HPd----~-----qVRqQAK~LLyI 251 (344)
|+...|.++|+.+++..|... ..+....+..|... |+.+.|..+.++-..--|+ . --|++|+.||..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~---id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~ 294 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHD---PDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAH 294 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTC---SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999777411 47788888888884 9999999999887722222 2 267888888865
Q ss_pred h
Q 019243 252 L 252 (344)
Q Consensus 252 L 252 (344)
+
T Consensus 295 ~ 295 (301)
T 3u64_A 295 V 295 (301)
T ss_dssp H
T ss_pred h
Confidence 4
No 237
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=52.99 E-value=48 Score=30.54 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCHH
Q 019243 169 QLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN--RHADCIALYKQLESNHPSKN 240 (344)
Q Consensus 169 ~~~leaG~aALerG~Y~-qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G--q~ekAIALCq~L~~~HPd~q 240 (344)
...+..-.+.+..|.|. +|+++.+.++...|.+.. +=..-..++...| +.++|+.+|..+...||..-
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 34556666778889996 899999999998876432 3333445667788 99999999999997888653
No 238
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=52.49 E-value=20 Score=29.65 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~ 199 (344)
..|...+..|...|+-|+|++|..+|+.+.....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 3456788899999999999999999999886544
No 239
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=51.91 E-value=56 Score=30.08 Aligned_cols=63 Identities=8% Similarity=-0.087 Sum_probs=36.7
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHH-HHHHHc---CChHHHHHHHHHHHhhCCC
Q 019243 175 GQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLA-MAYEAN---NRHADCIALYKQLESNHPS 238 (344)
Q Consensus 175 G~aALerG--~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLa-tAYeA~---Gq~ekAIALCq~L~~~HPd 238 (344)
|.....-| +|.+++++++.++...|.+...=-. +-|+. ...... ++.++++.+|..+...||.
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~-R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY-RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH-HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH-HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 34444444 7888888888877776665443222 22222 111233 6777888887777766663
No 240
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=51.34 E-value=35 Score=29.29 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
..-.|-.|..-+..|+|..|.++++.+++.-|.
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 345899999999999999999999999997774
No 241
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=49.68 E-value=26 Score=27.62 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
..-..+|...|+.+...++.|.|..|+=++.++++
T Consensus 5 ~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~E 39 (122)
T 1wol_A 5 EDWIKQAERDLEEARYAKSGGYYELACFLSQQCAE 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34567888999999999999999998877777665
No 242
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.32 E-value=26 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~ 200 (344)
.-+....+.|+..+.+|++..|+.||-.|+.-++.
T Consensus 18 ~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 18 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34667788999999999999999999998886665
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.78 E-value=1.4e+02 Score=28.80 Aligned_cols=77 Identities=9% Similarity=-0.036 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH----hhCCCHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE----SNHPSKN 240 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~--S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~----~~HPd~q 240 (344)
.|+.....+...+++|+|..|..+|..+.-.+-.. ...=.++.+..+.-|-..|+..+|..+++... ..++++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 35556777888999999999999999977543322 22335788888999999999999999998752 2345565
Q ss_pred HHH
Q 019243 241 IRR 243 (344)
Q Consensus 241 VRq 243 (344)
++-
T Consensus 216 lk~ 218 (445)
T 4b4t_P 216 LKL 218 (445)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 244
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=48.35 E-value=27 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
....++|...|+.+...++.|.|..|+=++..+++
T Consensus 5 ~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~E 39 (127)
T 1ufb_A 5 RDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAE 39 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34567888999999999999999998877777665
No 245
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=47.73 E-value=1.4e+02 Score=28.80 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CC-chHHHH-------------------------------------
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TF-FGGEIQ------------------------------------- 209 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~---S~-lGGEaQ------------------------------------- 209 (344)
.++.|-+++..|.+.+|+..|..++..++.. +. ...+++
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 5778999999999999999888888766532 21 111221
Q ss_pred ------------------HHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 210 ------------------IWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 210 ------------------mwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
..|-.|| .+++..-|-.+|+.|...-|++++.+||++++..=|.
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~ 246 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFF-KLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEK 246 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHH-HTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 1111121 3466777888999999778899999999999887764
No 246
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.44 E-value=1.1e+02 Score=37.73 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 149 RVRRELEKVAKEQAERRATAQLMFELG 175 (344)
Q Consensus 149 rv~~~le~~a~e~a~~~e~a~~~leaG 175 (344)
..++++++.+.+.+.+++.|+..|..+
T Consensus 1980 ~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1980 ELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555555554443
No 247
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=43.44 E-value=83 Score=26.74 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 207 EaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
.++..-+.|+...|.. .++.....+. +++++.||.+|-..|..+
T Consensus 143 ~vR~~a~~aL~~~~~~-~~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 143 NVRRATAFAISVINDK-ATIPLLINLL-KDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHH-cCCCHHHHHHHHHHHHhh
Confidence 5555555555555542 2444444444 466666666666666555
No 248
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.74 E-value=58 Score=31.20 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~l----GGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|.+.|+-|+.|+..+|..+.. -+=|...|+.+|.-.|+.++|+..|+.+.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 677778888888877653222 24578899999999999999999999998
No 249
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.51 E-value=70 Score=27.21 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 186 qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~G-q~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
.++..|-.++... ...++.+.+.|+...| ....++.....+. .++++.||..|-..|..+-.
T Consensus 159 ~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 159 ATIPLLINLLKDP------NGDVRNWAAFAININKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CCHHHHHHHHTCS------SHHHHHHHHHHHHHHTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHhhccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCC
Confidence 4566666655422 2368888888888876 3567777777776 79999999999999988764
No 250
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.96 E-value=48 Score=32.85 Aligned_cols=79 Identities=8% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC-CCCCCC
Q 019243 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----HADCIALYKQLESNHPSKNIRRQAADLRYILQA-PKLKIS 260 (344)
Q Consensus 187 AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq-----~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA-PkLkrp 260 (344)
++.+|+.++... .....+|.++++|+...+- .+.-..+.+... .++|++||+.|..++.+|.. |.+.
T Consensus 510 ~~~~l~~~l~~~----~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~~~~-- 582 (618)
T 1w63_A 510 VLDILESVLISN----MSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYDHMR-- 582 (618)
T ss_dssp HHHHHHHHHHST----TCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTTTHH--
T ss_pred HHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcHHHH--
Confidence 566777766533 2346888899998865443 234444555555 79999999999999999864 4432
Q ss_pred cccccccCCCCC
Q 019243 261 QEEMVTIPLIGS 272 (344)
Q Consensus 261 ~ew~veIPdL~~ 272 (344)
..-.-+.|.+..
T Consensus 583 ~~vl~~~P~~~~ 594 (618)
T 1w63_A 583 SALLERMPVMEK 594 (618)
T ss_dssp HHHHSCCCCCCC
T ss_pred HHHhhcCCCCCc
Confidence 223345565543
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=40.61 E-value=34 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~ 201 (344)
-.|-.|...++-|+|..|..+++.+++.-|.+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 48999999999999999999999999977753
No 252
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=39.49 E-value=81 Score=30.69 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhhCCCCC-------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 019243 183 MYGRAIEFLEGALTIIPRPT-------FFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~~~~~S-------~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~H 236 (344)
-|.+.++-|+.|+..+|... .--+=|...||.+|.-.|+.++|+..|+.+...+
T Consensus 173 vy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 173 VYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 36667777888888776431 1224588899999999999999999999998544
No 253
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=38.49 E-value=20 Score=36.00 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhh--CCCHHHHHHHHHHHhhhcCC
Q 019243 205 GGEIQIWLAMAYEANNR-----HADCIALYKQLESN--HPSKNIRRQAADLRYILQAP 255 (344)
Q Consensus 205 GGEaQmwLatAYeA~Gq-----~ekAIALCq~L~~~--HPd~qVRqQAK~LLyILEAP 255 (344)
...+|.++.+|+....- .+.-+.+.+..+ . ++|++||+.|..++.+|..+
T Consensus 534 ~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~-~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 534 SVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDS-QLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHH-HHSCSSHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHccC
Confidence 45788888888776542 223333444444 4 99999999999999999865
No 254
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=37.39 E-value=76 Score=30.47 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~l----GGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|.+.++-|+.|+..+|..... -+=|...||.+|.-.|+.++|+..|+.+.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi 223 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAI 223 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567777788888877753222 24578889999999999999999999998
No 255
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=36.90 E-value=54 Score=37.96 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
..+..|...++.|+|.+|+.++..+ .--.-|+.+|...|+.++||..|++-.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 4567899999999999999999885 134457888888899999999998653
No 256
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.75 E-value=1.1e+02 Score=26.59 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHHcCCh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-FFGGEIQIWLAMAYEANNRH 222 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S-~lGGEaQmwLatAYeA~Gq~ 222 (344)
+++.=.|=.|+.++-+++|.+|-+.|..|...++..+ ..--.+..+|+-+-.-.|+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455678899999999999999999999999988643 23335566676666666663
No 257
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=36.33 E-value=19 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L 232 (344)
.-...|...+.+|+|..|+.++..+ .--.-||.+|...|+.++|+..+++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 4577899999999999999999975 23456788888888888888888876
No 258
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=36.29 E-value=49 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
.+|+..|+.++.+|+.|.|..|+=+...+++
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~E 44 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAE 44 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5678899999999999999988876666655
No 259
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=34.91 E-value=75 Score=32.67 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 172 FELGQKAYGKGMYGRAI-EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 172 leaG~aALerG~Y~qAI-elLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
+..+.-....|+...|+ +.|+.++..+|.+ ..+.+.+|..+...|+.++|..++..+.
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455556788889998 9999999988753 2445556788899999999999999988
No 260
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=34.55 E-value=1.6e+02 Score=22.90 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019243 145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (344)
Q Consensus 145 ~~~~rv~~~le~~a~e~a~~~e~a~~~leaG~aAL 179 (344)
+...+|++.+.+.-.-..++...|.++|+.-...+
T Consensus 62 ~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhi 96 (104)
T 4afl_A 62 ALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHI 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666554444455566777776554443
No 261
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=34.36 E-value=1.7e+02 Score=25.74 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 019243 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAK 159 (344)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~le~~a~ 159 (344)
..+++++-+.-|. +|-+.||+|...+++++..- ....-.++-+.+++.+.++.-+
T Consensus 13 v~~~i~~m~~fI~--qEA~eKA~EI~~kAeeE~~~--ek~~~v~~~~~~i~~~~ek~~k 67 (233)
T 4efa_E 13 VNDELNKMQAFIR--KEAEEKAKEIQLKADQEYEI--EKTNIVRNETNNIDGNFKSKLK 67 (233)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555443 57788999999888776531 1112223334455555555443
No 262
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=34.33 E-value=85 Score=31.07 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCH
Q 019243 174 LGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYKQLESNHPSK 239 (344)
Q Consensus 174 aG~aALerG~Y~-qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq----------~ekAIALCq~L~~~HPd~ 239 (344)
...+....|.|. +|+++++.++...|.+. ++=..-..++...|+ .++|+.+|......+|..
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 333445667776 56999999999777642 333334556777787 899999999988778753
No 263
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=34.21 E-value=36 Score=29.49 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 221 RHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 221 q~ekAIALCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
-++.||.+++.......|++||.+|+.++...++
T Consensus 123 HH~~AI~ma~~~~~~g~dp~lk~lA~~ii~~Q~~ 156 (179)
T 2qf9_A 123 HHRGGVHMAKGCVERCTVGVEKRLARGMVESQES 156 (179)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5788999999887678899999999998876654
No 264
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.52 E-value=72 Score=30.74 Aligned_cols=51 Identities=14% Similarity=-0.098 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCC--Cc-----------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 184 YGRAIEFLEGALTIIPRPT--FF-----------------GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S--~l-----------------GGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
|.+.++-|+.|+..+|... .. -+=|...||.+|.-.|+.++|+..|+.+..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5666677888887776421 11 245888999999999999999999999983
No 265
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=33.28 E-value=1.6e+02 Score=24.64 Aligned_cols=63 Identities=21% Similarity=0.056 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 019243 151 RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (344)
Q Consensus 151 ~~~le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYe 217 (344)
..+++..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+... .+=++|.-|+....
T Consensus 20 ~eele~~~m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~----~AH~~QT~Liq~EA 82 (120)
T 3l8r_A 20 TEELQVAAFEIILNSGNARSIVHEAFDAMREKNYILAEQKLQEANDELL----KAHQAQTDLLQEYA 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 3456777776655666788899999999999999999999999866332 23466666666543
No 266
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=32.95 E-value=90 Score=29.82 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhhCCCH
Q 019243 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-----NRHADCIALYKQLESNHPSK 239 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-----Gq~ekAIALCq~L~~~HPd~ 239 (344)
..+|...+|.+++.-|. -..|-+..+|.+.|... |+.++|..++++-..-+|+.
T Consensus 179 l~~A~a~lerAleLDP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 46888999999987665 55789999999999995 99999999998877689864
No 267
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=32.86 E-value=93 Score=29.87 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~l----GGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
|.+.++-|+.|+..+|..+.. -+=|...||.+|.-.|+.++|+..|+.+..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 677777888888877643221 245788999999999999999999999984
No 268
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=31.80 E-value=79 Score=30.94 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 166 e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
.++....+.|..|+++|++..|..+|..|.+
T Consensus 380 ~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~ 410 (464)
T 4fx5_A 380 AEMAAAIQEGLDAQAAGDLDTATARLGRAMD 410 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344678899999999999999999999876
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.57 E-value=3.3e+02 Score=25.59 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHHHHHHc
Q 019243 168 AQLMFELG-QKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEAN 219 (344)
Q Consensus 168 a~~~leaG-~aALerG~Y~qAIelLE~a~~~~--~~~S~lGGEaQmwLatAYeA~ 219 (344)
|.++|..- -.-+.+++|.+||++|...+... ......|+..-+.|+.+|...
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~ 86 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA 86 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 44555543 33456678888888877655421 122333444444555555443
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=31.21 E-value=1.3e+02 Score=28.99 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhhhccC
Q 019243 118 LEKKAEELQSKAEEDD 133 (344)
Q Consensus 118 ~~~~~~~~~~~~~~~~ 133 (344)
++|...+|+.++++..
T Consensus 12 ~~~~i~rl~~~I~~G~ 27 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQ 27 (336)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4455566666666554
No 271
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=31.10 E-value=70 Score=31.02 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~l----GGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|.+.|+-|+.|+..+|..+.. -+=|...|+.+|.-.|+.++|++.|+.+.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666777788888877643221 23578889999999999999999999998
No 272
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.84 E-value=2.5e+02 Score=24.57 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 019243 157 VAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEG 193 (344)
Q Consensus 157 ~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~ 193 (344)
+|.+.+.....-..=-+.|..||.+|++.-|..-+..
T Consensus 23 ~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 23 AALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444444444443455679999999999988876655
No 273
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=30.41 E-value=54 Score=27.18 Aligned_cols=35 Identities=9% Similarity=-0.138 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 162 a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
..-..+|...|+.++.+++.|.|..|.=++.++++
T Consensus 10 ~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 10 RRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp HHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 44567788999999999999999988777777665
No 274
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=30.02 E-value=1.7e+02 Score=25.41 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----HH----HHHHHHHHHhhCCCHHHHHHHHHHHhhh
Q 019243 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----AD----CIALYKQLESNHPSKNIRRQAADLRYIL 252 (344)
Q Consensus 185 ~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~----ek----AIALCq~L~~~HPd~qVRqQAK~LLyIL 252 (344)
...++.+.+++..-++ +.=.+.-.||..++..-|-. .. .+..+..+. .|+|+.||.-|..++-.|
T Consensus 138 ~~~~e~l~~~l~~Knp--kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLP--KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGGCSCH--HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHH
Confidence 3444555444432222 34446667888888876642 22 222344455 699999999999987555
No 275
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.58 E-value=50 Score=32.33 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=46.2
Q ss_pred HhcCCHHH----HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhhCCCHHHHHHHHHH
Q 019243 179 YGKGMYGR----AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH------ADCIALYKQLESNHPSKNIRRQAADL 248 (344)
Q Consensus 179 LerG~Y~q----AIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~------ekAIALCq~L~~~HPd~qVRqQAK~L 248 (344)
.-=|+|+. +...|+..+..+. .....+|.++++|+...+-. ..-..+.+.....++|++||+.|..+
T Consensus 450 wilGey~~~~~~~~~~l~~l~~~~~---~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y 526 (591)
T 2vgl_B 450 WIVGEYAERIDNADELLESFLEGFH---DESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIY 526 (591)
T ss_dssp HHHHTTCTTCTTHHHHHHHHSTTCS---SSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHcccccccCHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Confidence 33466654 3456666554333 23467888888888766543 22233444444246899999999999
Q ss_pred HhhhcC
Q 019243 249 RYILQA 254 (344)
Q Consensus 249 LyILEA 254 (344)
+.+|..
T Consensus 527 ~~ll~~ 532 (591)
T 2vgl_B 527 WRLLST 532 (591)
T ss_dssp HTTTTT
T ss_pred HHHHCc
Confidence 999965
No 276
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=29.54 E-value=1e+02 Score=30.10 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCchH-----HHHHHHHHHHH------HcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRPTFFGG-----EIQIWLAMAYE------ANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S~lGG-----EaQmwLatAYe------A~Gq~ekAIALCq~L~ 233 (344)
|.+.++-|+.|+..+|......| =|...|+.+|. +.++.++|+..|+.+.
T Consensus 161 y~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi 221 (499)
T 3jys_A 161 FNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVI 221 (499)
T ss_dssp HHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHH
Confidence 55666778888877765332223 36667777666 6789999999999998
No 277
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.50 E-value=1.4e+02 Score=28.92 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=48.4
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhh-CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCHHH
Q 019243 171 MFELGQKA-YGKGMYGRAIEFLEGALTI-IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES--NHPSKNI 241 (344)
Q Consensus 171 ~leaG~aA-LerG~Y~qAIelLE~a~~~-~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~--~HPd~qV 241 (344)
.|..-+.+ ...|++..|.++|+..... +.+ ....-..|+.||...|+.++|..+.+.+.. ..|+..+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVP----EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 34454544 4679999999999997652 222 234566789999999999999999999863 2455544
No 278
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=29.37 E-value=1.2e+02 Score=29.45 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhCCCC--CC-----chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 019243 184 YGRAIEFLEGALTIIPRP--TF-----FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~--S~-----lGGEaQmwLatAYeA~Gq~ekAIALCq~L~ 233 (344)
|.+.++-|+.|+..+|.. +. --+=|...|+.+|.-.|+.++|++.|+.+.
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi 209 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVY 209 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888777642 11 123578899999999999999999999998
No 279
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=29.00 E-value=2e+02 Score=27.29 Aligned_cols=60 Identities=5% Similarity=-0.105 Sum_probs=39.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHhhCCC
Q 019243 175 GQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-RHADCIALYKQLESNHPS 238 (344)
Q Consensus 175 G~aALerG-~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~-G-q~ekAIALCq~L~~~HPd 238 (344)
|.....-| .|.+++++++.++...|.+... =.-+-|+. ... | +.++++.+|..+...+|.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a-W~hR~wlL---~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQV-WHHRLLLL---DRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH-HHHHHHHH---HHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH-HHHHHHHH---HHhcCCChHHHHHHHHHHHHhCCC
Confidence 55555566 5999999999988866653222 12233333 333 6 789999999998866764
No 280
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=28.35 E-value=2.2e+02 Score=22.50 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 019243 141 ETEEEKRMRVRRELEKVAK-----EQAERRATAQLMFELGQKAYGKGMYGRAIEFL 191 (344)
Q Consensus 141 ~~~~~~~~rv~~~le~~a~-----e~a~~~e~a~~~leaG~aALerG~Y~qAIelL 191 (344)
|..+.+-..+.+-|+++-. ....-.+-|+.=++.|..-|++|+|-.|+.-+
T Consensus 7 Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 7 ERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555556666555432 22334466888999999999999999998644
No 281
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=28.16 E-value=1.5e+02 Score=28.85 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=42.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 177 KAYGKGMYGRAIEFLEGALTI-IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 177 aALerG~Y~qAIelLE~a~~~-~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
.....|++..|+++|+..... +.++ ...--.|+.+|...|+.++|..+.+.+..
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344679999999999997652 2232 34455789999999999999999999983
No 282
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=26.11 E-value=1.5e+02 Score=31.42 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHH
Q 019243 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (344)
Q Consensus 170 ~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVR 242 (344)
.....+...+.+|+|.-|++.-..++...|. .+ ..=..||.+|...|+.+.|+- +|- +||....+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF--~tW~~La~vYi~l~d~e~ALL---tLN-ScPm~t~~ 403 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD--SF--ESWYNLARCHIKKEEYEKALF---AIN-SMPRLRKN 403 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CH--HHHHHHHHHHHHTTCHHHHHH---HHH-HSCC----
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hh--HHHHHHHHHHHHhccHHHHHH---HHh-cCCCcccc
Confidence 5566788889999999999999999887775 22 334569999999999999985 476 89965443
No 283
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.62 E-value=1.7e+02 Score=22.06 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhccCcch
Q 019243 115 MRELEKKAEELQSKAEEDDSES 136 (344)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ 136 (344)
+.||.++-|||..++++-+--+
T Consensus 27 ieelkkkweelkkkieelgggg 48 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGG 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 4678888888888888766443
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.44 E-value=1.4e+02 Score=28.44 Aligned_cols=76 Identities=14% Similarity=-0.034 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCHHHHH
Q 019243 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRR 243 (344)
Q Consensus 167 ~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~---~~HPd~qVRq 243 (344)
.+...++.|.--++.|+|..|++.|..+...+... ..-.++-+.++..+-..|+...|...+.+.. ...+|+.++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 44567889999999999999999999987765432 3335666677778888899999888877753 2345666553
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.67 E-value=4.4e+02 Score=25.21 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CHH
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT---IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKN 240 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~---~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HP----d~q 240 (344)
.+--+......+++|+|.+|-.++..+.. ..+.+..+-+.....++.-|...++..+|-..|..+- ..| ++.
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~-~~~~~~~d~~ 255 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY-QTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcccccCCHH
Confidence 34456677888999999999999999753 3334445778888999999999999999988888775 333 444
Q ss_pred HHHHHHH--HHhhhcCCC
Q 019243 241 IRRQAAD--LRYILQAPK 256 (344)
Q Consensus 241 VRqQAK~--LLyILEAPk 256 (344)
-+..|.. +++++=+|.
T Consensus 256 ~~~~~L~~~v~~~iLa~~ 273 (445)
T 4b4t_P 256 KWKPVLSHIVYFLVLSPY 273 (445)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 4555544 456666763
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.35 E-value=1.1e+02 Score=33.66 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 171 ~leaG~aALerG~Y~qAIelLE~a~~~~~~~S~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
.+-.|+..+--|+...+=.+++......++..+. -+-+.+++||.|+|+...--.|-..+. .+++..||+-|---|.
T Consensus 527 ~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRy--gaa~alglAyaGTGn~~aIq~LL~~~~-~d~~d~VRraAViaLG 603 (963)
T 4ady_A 527 GLAVGLALINYGRQELADDLITKMLASDESLLRY--GGAFTIALAYAGTGNNSAVKRLLHVAV-SDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHH-HCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhc-cCCcHHHHHHHHHHHH
Confidence 3445666666667666666666655544332222 334677889999999644444888888 8999999988877665
Q ss_pred hh
Q 019243 251 IL 252 (344)
Q Consensus 251 IL 252 (344)
.+
T Consensus 604 lI 605 (963)
T 4ady_A 604 FV 605 (963)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 287
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.22 E-value=94 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 209 QmwLatAYeA~Gq~ekAIA-LCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
++.+.-.+.+.|..++|+. +|+.|. -||.|. +||.|++.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~-Vc~qP~------~LL~i~q~ 59 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQ------QLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCH------HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHH------HHHHHHHh
Confidence 4555667888999999988 999998 899884 57777764
No 288
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.88 E-value=2.8e+02 Score=22.38 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 154 le~~a~e~a~~~e~a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
++..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+
T Consensus 4 le~~~m~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 4 LEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444445688888899999999999999999998765
No 289
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.88 E-value=1.2e+02 Score=23.47 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019243 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (344)
Q Consensus 168 a~~~leaG~aALerG~Y~qAIelLE~a~~ 196 (344)
|...+..|..+=..|+|.+|+.+...+++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666677778888888877776654
No 290
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=21.60 E-value=89 Score=27.03 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Q 019243 222 HADCIALYKQLESNHPSKNIRRQAADLRY 250 (344)
Q Consensus 222 ~ekAIALCq~L~~~HPd~qVRqQAK~LLy 250 (344)
++.||.+++....+-.||+||..|+++..
T Consensus 20 h~~AI~ma~lal~~~~d~~Vk~lA~~Ii~ 48 (179)
T 2qf9_A 20 HQQAVEMSYIVRDRTDDEEVRRLAYDIAQ 48 (179)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57789999887656669999999887653
No 291
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.47 E-value=2.1e+02 Score=27.61 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCCC---------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 019243 184 YGRAIEFLEGALTIIPRPT---------FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (344)
Q Consensus 184 Y~qAIelLE~a~~~~~~~S---------~lGGEaQmwLatAYeA~Gq~ekAIALCq~L~~ 234 (344)
|.+.++-|+.|+...+..+ .--+=|...|+.+|.-.|+.++|+..|+.+..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5666777777777654211 11235888999999999999999999999984
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.20 E-value=87 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHhhCCCHHHHHHHHHHHhhhcC
Q 019243 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQA 254 (344)
Q Consensus 209 QmwLatAYeA~Gq~ekAIA-LCq~L~~~HPd~qVRqQAK~LLyILEA 254 (344)
++.+.-.+.+.|..+.|+. +|+.|. -||.| .+||.|++.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~-Vc~qP------~~LL~i~q~ 62 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQP------QQLLQVLQQ 62 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HHSCH------HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCH------HHHHHHHHh
Confidence 4556667889999999999 999998 89887 468888876
No 293
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=20.93 E-value=6.4e+02 Score=25.30 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHH
Q 019243 146 KRMRVRRELEKVAKEQAERR---ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAM 214 (344)
Q Consensus 146 ~~~rv~~~le~~a~e~a~~~---e~a~~~leaG~aALerG~Y~qAIelLE~a~~~~~-~~S~lGGEaQmwLat 214 (344)
.|+-++.+-..-|+...++. =++...++..+.|++.|+..+|-.+|..+-+.++ ....+..+++-.-..
T Consensus 148 tRe~il~~fk~pA~~l~~~~~y~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv~d~FkaeL~~aa~~ 220 (412)
T 2ra1_A 148 TRELLRSTFKADAQALRDRLIYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVTDAFKAELQKAAQD 220 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Confidence 35555555554455444433 2356788899999999999999999999777555 445677776654433
No 294
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=20.42 E-value=5.9e+02 Score=26.05 Aligned_cols=49 Identities=12% Similarity=-0.026 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCC
Q 019243 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIW--LAMAYEANNRHADCIALYKQLESNHP 237 (344)
Q Consensus 183 ~Y~qAIelLE~a~~~~~~~S~lGGEaQmw--LatAYeA~Gq~ekAIALCq~L~~~HP 237 (344)
++..|-.+||.++..+|.. ..+| .+.-....|+.++|.++++.....+|
T Consensus 485 d~e~Ar~ife~~Lk~~p~~------~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATD------GEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 4666666666666655432 1122 22223345666666666665553344
Done!