BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019244
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 566 bits (1460), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/368 (76%), Positives = 300/368 (81%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIM
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 337 LPRPVPRL 344
R V RL
Sbjct: 363 SSRAVARL 370
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/368 (75%), Positives = 300/368 (81%), Gaps = 26/368 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+D+YASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIM
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 337 LPRPVPRL 344
R V RL
Sbjct: 362 SSRAVARL 369
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 561 bits (1446), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/358 (77%), Positives = 296/358 (82%), Gaps = 26/358 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIM
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 105 --------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 334
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/350 (50%), Positives = 229/350 (65%), Gaps = 30/350 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 30 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 89
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM---------------------- 104
G ++SMPI + TAMQ+MAH +GE GT M
Sbjct: 90 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 149
Query: 105 -----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 159
+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 150 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 209
Query: 160 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L +D
Sbjct: 210 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREA 269
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV KALALG
Sbjct: 270 VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG 329
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
A +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I +
Sbjct: 330 AKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 379
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/350 (50%), Positives = 229/350 (65%), Gaps = 30/350 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM---------------------- 104
G ++SMPI + TAMQ+MAH +GE GT M
Sbjct: 68 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 127
Query: 105 -----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 159
+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 128 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 187
Query: 160 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L +D
Sbjct: 188 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREA 247
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV KALALG
Sbjct: 248 VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG 307
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
A +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I +
Sbjct: 308 AKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/350 (50%), Positives = 229/350 (65%), Gaps = 30/350 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 25 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 84
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM---------------------- 104
G ++SMPI + TAMQ+MAH +GE GT M
Sbjct: 85 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 144
Query: 105 -----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 159
+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 145 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 204
Query: 160 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L +D
Sbjct: 205 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREA 264
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV KALALG
Sbjct: 265 VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG 324
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326
A +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I +
Sbjct: 325 AKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 374
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/256 (55%), Positives = 159/256 (62%), Gaps = 30/256 (11%)
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMVYKDRNVVAQLVRRAER 121
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIM + +
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 122 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 181
G + L V R N + + + A +A V
Sbjct: 61 PGIRFFQLYVYKDR---------------------NVVAQLVRRAERAGFKAIALTV--- 96
Query: 182 IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATI 241
WKDV WLQTIT LPILVKGV+TAED SNHGARQLDYVPATI
Sbjct: 97 ------WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATI 150
Query: 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 301
MALEEVVKA QGRIPVFLDGGVRRGTDVFKALALGA+G+FIGRPVV+SLAAEGE GV++V
Sbjct: 151 MALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKV 210
Query: 302 LEMLREEFELAMALSG 317
L+M+R+EFEL MALSG
Sbjct: 211 LQMMRDEFELTMALSG 226
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 198/353 (56%), Gaps = 34/353 (9%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMV------YKDRNVVA---- 113
T+ G +IS PI I+PTA +A P+GE V Y ++VA
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 114 -----------------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
+ + L K ++ S ++ S W D+ LQ+IT+LPI++KG+LT ED
Sbjct: 182 DLRAL---KEEKPTQSVPVSFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 196/352 (55%), Gaps = 27/352 (7%)
Query: 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTV 65
NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 66 LGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMVYK------------------ 107
LG + SMP++I PTA+ P+G+ G V
Sbjct: 67 LGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 108 -------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 160
R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKNF+G
Sbjct: 127 WFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEG 186
Query: 161 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXX 220
+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AED
Sbjct: 187 IDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEG 246
Query: 221 XXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 280
SNHG RQLD + + L + V T G+ PV +D G RRG+D+ KALALGA +
Sbjct: 247 ADGVILSNHGGRQLDCAISPMEVLAQSVAKT-GK-PVLIDSGFRRGSDIVKALALGAEAV 304
Query: 281 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332
+GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 305 LLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 195/352 (55%), Gaps = 27/352 (7%)
Query: 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTV 65
NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 66 LGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMVYK------------------ 107
LG + SMP++I PT + P+G+ G V
Sbjct: 67 LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 108 -------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 160
R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKNF+G
Sbjct: 127 WFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEG 186
Query: 161 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXX 220
+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AED
Sbjct: 187 IDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEG 246
Query: 221 XXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 280
SNHG RQLD + + L + V T G+ PV +D G RRG+D+ KALALGA +
Sbjct: 247 ADGVILSNHGGRQLDCAISPMEVLAQSVAKT-GK-PVLIDSGFRRGSDIVKALALGAEAV 304
Query: 281 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 332
+GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 305 LLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 194/353 (54%), Gaps = 34/353 (9%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMV------YKDRNVVA---- 113
T+ G +IS PI I+PTA +A P+GE V Y ++VA
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 114 -----------------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 156
Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 157 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 216
+ L K ++ S + S W D+ LQ+IT+LPI++KG+LT ED
Sbjct: 182 ALRAL---KEEKPTQSVPVLFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 217 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276
SNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 277 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 199/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 18 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 77
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 78 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 137
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG++E D+K +F+
Sbjct: 138 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKFS 197
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T F+ + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 198 N----TKAGFKAMKKTNVEESQ--GASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 251
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVV-----KATQGRIPVFLDGGV 263
ED SNHG RQLD+ A I L E + + + ++ VF+DGGV
Sbjct: 252 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 311
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 312 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 371
Query: 324 ITRD 327
+ D
Sbjct: 372 LKPD 375
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 20 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 79
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 80 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 139
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 140 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 199
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 200 N----TKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 253
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVV-----KATQGRIPVFLDGGV 263
ED SNHG RQLD+ A I L E + + + ++ VF+DGGV
Sbjct: 254 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 313
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 314 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 373
Query: 324 ITRD 327
+ D
Sbjct: 374 LKPD 377
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 N----TKAGPKAMKKTNVEES--QGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SNHG RQLD+ A I L E + + R + VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRD 327
+ D
Sbjct: 473 LKPD 476
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 114 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 173
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 174 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 233
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 234 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 293
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 294 N----TKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 347
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SNHG RQLD+ A I L E + + R + VF+DGGV
Sbjct: 348 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 407
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 408 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 467
Query: 324 ITRD 327
+ D
Sbjct: 468 LKPD 471
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 N----TKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SNHG RQLD+ A I L E + + R + VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRD 327
+ D
Sbjct: 473 LKPD 476
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 197/364 (54%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + +Y+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 N----TKAGPKAMKKTNVEES--QGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SNHG RQLD+ A I L E + + R + VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRD 327
+ D
Sbjct: 473 LKPD 476
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 196/364 (53%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ T + K+ +P EGE T
Sbjct: 179 ISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 N----TKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SNHG RQLD+ A I L E + + R + VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRD 327
+ D
Sbjct: 473 LKPD 476
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 196/364 (53%), Gaps = 43/364 (11%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT----------------- 102
++T +LG + +P ++ TA+ K+ +P EGE T
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 103 --------------IMVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 148
+ V DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 149 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 208
T + + ++E+ G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 N----TKAGPKAMKKTNVEES--QGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 209 TAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGR-----IPVFLDGGV 263
ED SN G RQLD+ A I L E + + R + VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNQGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 323
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 324 ITRD 327
+ D
Sbjct: 473 LKPD 476
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 160/355 (45%), Gaps = 45/355 (12%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 18 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 77
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
T +LG KI P ++AP A +AH E GTIM
Sbjct: 78 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 137
Query: 105 -------VY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
+Y KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 138 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 197
Query: 156 ------KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 209
+G+ L + G + +S +D++ + + LP+ VKG+
Sbjct: 198 VQRYLRGTAEGMSLNN------------IYGASKQKISPRDIEEIAAHSGLPVFVKGIQH 245
Query: 210 AEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269
ED SNHGARQL P + L + + R+P+ D GVRRG V
Sbjct: 246 PEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHV 305
Query: 270 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
KALA GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++
Sbjct: 306 AKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 360
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 162/351 (46%), Gaps = 37/351 (10%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 18 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 77
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
T +LG KI P ++AP A +AH E GTIM
Sbjct: 78 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 137
Query: 105 -------VY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
+Y KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 138 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 197
Query: 156 --KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDX 213
+ +G G M N + G + +S +D++ + + LP+ VKG+ ED
Sbjct: 198 VQRYLRGTAEG-MSLNN-------IYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDA 249
Query: 214 XXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 273
SNHGARQL P + L + + R+P+ D GVRRG V KAL
Sbjct: 250 DMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKAL 309
Query: 274 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
A GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++
Sbjct: 310 ASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 360
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 162/351 (46%), Gaps = 37/351 (10%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIM------------------ 104
T +LG KI P ++AP A +AH E GTIM
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 105 -------VY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 155
+Y KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 156 --KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDX 213
+ +G G M N + G + +S +D++ + + LP+ VKG+ ED
Sbjct: 192 VQRYLRGTAEG-MSLNN-------IYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDA 243
Query: 214 XXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 273
SNHGARQL P + L + + R+P+ D GVRRG V KAL
Sbjct: 244 DMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKAL 303
Query: 274 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324
A GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++
Sbjct: 304 ASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 354
>pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0K|B Chain B, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0N|A Chain A, Ipp:dmapp Isomerase Type Ii, Fmn Complex
pdb|1P0N|B Chain B, Ipp:dmapp Isomerase Type Ii, Fmn Complex
Length = 349
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 260 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 319
GG++ DV KA+ALGAS + + +L GE+G+ ++++ EE +L M + G R
Sbjct: 257 SGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGAR 316
Query: 320 SLKEITRDHIVTEWD 334
++ ++ + +V + +
Sbjct: 317 TIADLQKAPLVIKGE 331
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 241 IMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296
I A+E+ A++ IP+ DGG+R D+ KALA+GAS + IG + + + GEK
Sbjct: 232 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK 288
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 241 IMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296
I A+E+ A++ IP+ DGG+R D+ KALA+GAS + IG + + + GEK
Sbjct: 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK 249
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 260 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 319
GG+R G D KA+ALGA + PV+ S A EG++ + + + E + AM L+G +
Sbjct: 273 SGGIRSGLDAAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSK 331
Query: 320 SLKEITRDHIV 330
+ + + IV
Sbjct: 332 DVDALKKTSIV 342
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313
++ + GG+R D+ KAL LGA + + R ++ + V ++ +E+ L M
Sbjct: 278 KVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIM 337
Query: 314 ALSGCRSLKEI 324
C+++ E+
Sbjct: 338 CALNCQTIAEL 348
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS-------GIFIGRPVVYSLAA 292
+ + E+ TQGRIP+ GGV G D + + GAS IF+G PVV
Sbjct: 289 STQTIREMYALTQGRIPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVR--- 345
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 346 -----VKRELEALLKE 356
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+M EV A + +P+ DGG+R D+ KALA GA + +G + A GE
Sbjct: 329 VMECSEV--ARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGE 381
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
IPV DGG+R D+ KA+A GAS + +G + A GE
Sbjct: 234 IPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGE 274
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
IPV DGG+R D+ KA+A GAS + +G + A GE
Sbjct: 335 IPVIADGGIRFSGDISKAIAAGASCVXVGSXFAGTEEAPGE 375
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
IPV DGG+R D+ KA+A GAS + +G + A GE
Sbjct: 212 IPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGE 252
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+P+ DGG++ V KALALGAS + +G + + A GE
Sbjct: 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGE 399
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+PV DGG++ + KALALGAS + +G + + A GE
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 399
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+PV DGG++ + KALALGAS + +G + + A GE
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 399
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 241 IMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGR 284
I A+ +V +A I + DGG+R DV KA+A GA + IG
Sbjct: 242 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGN 286
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 237 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283
VP + +A + IPV DGG++ D+ KALA GA + +G
Sbjct: 342 VPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 235 DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294
+ V T+ A++E+ K + V G+ +G DV AL LGA G+ + VV A
Sbjct: 155 EVVEGTVRAVKEINK----DVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK--AKNV 208
Query: 295 EKGVRRVLEML 305
E+ +R +++ +
Sbjct: 209 EEAIRELIKFI 219
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 307 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 363
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 364 -----VKRELEALLKE 374
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 312 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 368
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 369 -----VKRELEALLKE 379
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 310 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 366
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 367 -----VKRELEALLKE 377
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 312 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 368
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 369 -----VKRELEALLKE 379
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 284 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 340
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 341 -----VKRELEALLKE 351
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI-------FIGRPVVYSLAA 292
+ + E+ TQGR+P+ GGV G D + + GAS + F G PVV
Sbjct: 282 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGK--- 338
Query: 293 EGEKGVRRVLEMLREE 308
V+R LE L +E
Sbjct: 339 -----VKRELEALLKE 349
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 237 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283
VP + +A + IPV DGG++ D KALA GA + +G
Sbjct: 342 VPQLTAVYDCATEARKHGIPVIADGGIKYSGDXVKALAAGAHVVXLG 388
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 251 TQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
T GR + + DG + DV KA+A GA + +G P+ + A G+
Sbjct: 273 TGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGK 318
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR--EE 308
GR+PV F GGV D + LGA G+F+G + S EK R ++E E+
Sbjct: 234 GRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKS--ENPEKYARAIVEATTHYED 291
Query: 309 FELAMALS 316
+EL LS
Sbjct: 292 YELIAHLS 299
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
IP DGG+ + KALALGAS + +G + + + GE
Sbjct: 385 IPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGE 425
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
IP DGG+ + KALALGAS + +G + + + GE
Sbjct: 385 IPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGE 425
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 241 IMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
I A+ V A +G +P+ DGG+R D+ KA+ GA + +G + A GE
Sbjct: 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGE 373
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 241 IMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
I A+ V A +G +P+ DGG+R D+ KA+ GA + +G + A GE
Sbjct: 338 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGE 393
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283
P+ DGG+R DV K++ GA+ + IG
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIG 239
>pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|B Chain B, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|C Chain C, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|D Chain D, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|E Chain E, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|F Chain F, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|G Chain G, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|H Chain H, Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei
Length = 225
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286
P I E+VK + V G+ G DV KA+ LG G+ + V
Sbjct: 160 PEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGV 208
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+ DGG++ D+ KALA GA + IG + S GE
Sbjct: 202 IVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGE 240
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 109 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158
R +V +++ R ER G+K +AL + P + + K+ + P F L +
Sbjct: 17 RGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKY 66
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296
V DGG+R D+ KA+A GA + +G + + A G++
Sbjct: 331 VIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKE 370
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 235 DYVPATIMA-LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE 293
DYV T +A + K I + GGV G D F+ + GAS + IG +L E
Sbjct: 255 DYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGT----ALHQE 310
Query: 294 GEKGVRRVLEML 305
G + +R+ + L
Sbjct: 311 GPQIFKRITKEL 322
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIF 281
R P+ LD V +D KALALGA G+
Sbjct: 239 RTPLCLDESVASASDARKALALGAGGVI 266
>pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|B Chain B, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|C Chain C, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|D Chain D, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGH|A Chain A, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|B Chain B, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|C Chain C, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|D Chain D, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
Length = 375
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIF 281
R P+ LD V +D KALALGA G+
Sbjct: 239 RTPLCLDESVASASDARKALALGAGGVI 266
>pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|B Chain B, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|C Chain C, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|D Chain D, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
Length = 375
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIF 281
R P+ LD V +D KALALGA G+
Sbjct: 239 RTPLCLDESVASASDARKALALGAGGVI 266
>pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|B Chain B, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|C Chain C, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|D Chain D, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIF 281
R P+ LD V +D KALALGA G+
Sbjct: 239 RTPLCLDESVASASDARKALALGAGGVI 266
>pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|B Chain B, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|C Chain C, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|D Chain D, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1XPY|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
Length = 375
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 254 RIPVFLDGGVRRGTDVFKALALGASGIF 281
R P+ LD V +D KALALGA G+
Sbjct: 239 RTPLCLDESVASASDARKALALGAGGVI 266
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 27/123 (21%)
Query: 188 WKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQ--LDYVPATIMALE 245
W + L+ + + PI V G+ S H AR+ L Y +A
Sbjct: 105 WSHMTVLENVMEAPIQVLGL-------------------SKHDARERALKY-----LAKV 140
Query: 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 305
+ + QG+ PV L GG ++ + +ALA+ + P +L E V R+++ L
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP-TSALDPELVGEVLRIMQQL 199
Query: 306 REE 308
EE
Sbjct: 200 AEE 202
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
GR+PV F GGV D + LGA G+F+G + S
Sbjct: 224 GRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKS 262
>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
Length = 261
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 124 FKAIALTVDTPRLGRREADIKNRF--TLPPFLTLKNFQGLDLGKMDE 168
K + +V T L R+ AD++N T PPF+T + D+ K++E
Sbjct: 47 LKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEE 93
>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
Intercellular Chloride Ion Channel
Length = 267
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 124 FKAIALTVDTPRLGRREADIKNRF--TLPPFLTLKNFQGLDLGKMDE 168
K + +V T L R+ AD++N T PPF+T + D+ K++E
Sbjct: 47 LKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEE 93
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
G++PV F GGV D + LGA G+F+G + S
Sbjct: 206 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 244
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
G++PV F GGV D + LGA G+F+G + S
Sbjct: 203 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 241
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286
Q ++PV +D G+ D A+ LGA G+ + V
Sbjct: 174 QAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAV 208
>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
Length = 330
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
GR+PV F GGV D + LG+ G+F+G + S
Sbjct: 239 GRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKS 277
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 253 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
GR+PV F GGV D +A+G G+F+G + S
Sbjct: 246 GRLPVVNFAAGGVATPADAALMMAMGMDGVFVGSGIFKS 284
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295
+ DGG++ D+ KALA G + + +G + A GE
Sbjct: 339 IIADGGIKYSGDIVKALAAGGNAVXLGSXFAGTDEAPGE 377
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 123 GFKAIALTVDTPRL---GRREADIKNRFTLPP 151
G K T+D PR G EAD+K+ F +PP
Sbjct: 409 GAKVRLATIDRPRFTQWGETEADVKDGFVVPP 440
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 108 DRNVVAQLVRRAERAGFKAIALTV 131
R +V ++VRR ER GFK +AL +
Sbjct: 34 QRRLVGEIVRRFERKGFKLVALKL 57
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 252 QGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
+G++PV F GGV D + LG G+F+G + S
Sbjct: 196 KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKS 235
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 252 QGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289
+G++PV F GGV D + LG G+F+G + S
Sbjct: 202 KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKS 241
>pdb|1XM3|A Chain A, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|B Chain B, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|C Chain C, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|D Chain D, Crystal Structure Of Northeast Structural Genomics Target
Sr156
Length = 264
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286
Q ++PV +D G+ D A LGA G+ + V
Sbjct: 176 QAKVPVIVDAGIGSPKDAAYAXELGADGVLLNTAV 210
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 248 VKATQGRIP---VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 304
V A R P VF GGV G D F + GAS + +G +L EG +
Sbjct: 233 VNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGT----ALQEEGPG----IFTR 284
Query: 305 LREEFELAMALSGCRSLKEI 324
L +E MA G R+L+E
Sbjct: 285 LEDELLEIMARKGYRTLEEF 304
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 248 VKATQGRIP---VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 304
V A R P VF GGV G D F + GAS + +G +L EG +
Sbjct: 235 VNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGT----ALQEEGPG----IFTR 286
Query: 305 LREEFELAMALSGCRSLKEI 324
L +E MA G R+L+E
Sbjct: 287 LEDELLEIMARKGYRTLEEF 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,820,413
Number of Sequences: 62578
Number of extensions: 323636
Number of successful extensions: 1090
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 102
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)