Query 019244
Match_columns 344
No_of_seqs 309 out of 1985
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 1.2E-81 2.7E-86 572.5 26.7 330 4-333 1-357 (363)
2 PLN02493 probable peroxisomal 100.0 9.8E-75 2.1E-79 555.7 32.0 331 3-333 2-358 (367)
3 PLN02535 glycolate oxidase 100.0 3.9E-72 8.5E-77 538.4 31.3 333 2-337 3-361 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 6.5E-72 1.4E-76 539.2 31.7 327 3-330 2-376 (381)
5 TIGR02708 L_lactate_ox L-lacta 100.0 2.8E-71 6.1E-76 532.4 31.9 325 2-333 11-362 (367)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.8E-70 3.9E-75 530.1 31.8 324 4-328 18-382 (383)
7 cd04736 MDH_FMN Mandelate dehy 100.0 1.3E-70 2.9E-75 526.7 30.5 317 8-326 1-361 (361)
8 PF01070 FMN_dh: FMN-dependent 100.0 3.9E-70 8.5E-75 527.0 30.1 316 14-329 1-355 (356)
9 cd04737 LOX_like_FMN L-Lactate 100.0 1.3E-69 2.8E-74 520.3 30.9 321 3-329 4-351 (351)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.2E-66 2.5E-71 499.9 32.3 312 8-326 1-343 (344)
11 PLN02979 glycolate oxidase 100.0 4.2E-61 9.1E-66 457.8 28.9 292 45-336 43-360 (366)
12 COG1304 idi Isopentenyl diphos 100.0 7.4E-61 1.6E-65 459.8 25.0 326 7-333 1-352 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 9.6E-53 2.1E-57 399.1 30.6 273 8-326 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 1.1E-40 2.3E-45 319.7 25.5 274 38-326 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 1.5E-40 3.2E-45 321.4 26.3 281 39-333 26-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 6E-40 1.3E-44 315.4 25.4 277 41-331 21-331 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 2.4E-31 5.1E-36 251.7 22.4 260 42-332 3-313 (321)
18 PRK05458 guanosine 5'-monophos 100.0 4.7E-31 1E-35 250.7 22.9 260 42-332 6-316 (326)
19 cd02808 GltS_FMN Glutamate syn 100.0 3.5E-29 7.5E-34 245.5 24.3 263 58-330 59-390 (392)
20 TIGR01305 GMP_reduct_1 guanosi 100.0 1.4E-27 3.1E-32 224.4 20.9 258 42-327 9-329 (343)
21 PRK08649 inosine 5-monophospha 99.9 7.1E-25 1.5E-29 212.4 20.9 275 41-331 16-367 (368)
22 PRK05096 guanosine 5'-monophos 99.9 5.5E-24 1.2E-28 200.1 17.9 258 42-327 10-330 (346)
23 cd00381 IMPDH IMPDH: The catal 99.9 2.5E-23 5.3E-28 199.5 21.1 257 42-329 3-321 (325)
24 PF00478 IMPDH: IMP dehydrogen 99.9 1.1E-23 2.3E-28 201.5 17.7 258 42-328 4-336 (352)
25 PF01645 Glu_synthase: Conserv 99.9 5.5E-24 1.2E-28 204.8 15.0 243 68-319 62-368 (368)
26 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 3E-22 6.4E-27 193.7 21.6 276 41-330 13-368 (369)
27 PRK06843 inosine 5-monophospha 99.9 2.8E-22 6.1E-27 195.2 20.4 281 41-327 10-381 (404)
28 COG0069 GltB Glutamate synthas 99.9 5.4E-21 1.2E-25 187.8 20.0 252 68-329 163-478 (485)
29 PTZ00314 inosine-5'-monophosph 99.9 1.6E-20 3.4E-25 189.1 21.3 145 182-326 264-466 (495)
30 PRK05567 inosine 5'-monophosph 99.9 3.4E-20 7.3E-25 187.1 21.8 141 187-327 256-455 (486)
31 TIGR01303 IMP_DH_rel_1 IMP deh 99.9 6E-20 1.3E-24 183.7 21.6 142 187-328 253-457 (475)
32 TIGR01302 IMP_dehydrog inosine 99.8 9.2E-20 2E-24 182.2 21.4 142 184-325 249-449 (450)
33 PLN02274 inosine-5'-monophosph 99.8 8.3E-20 1.8E-24 184.0 18.9 142 184-327 273-473 (505)
34 PRK07107 inosine 5-monophospha 99.8 1E-19 2.3E-24 183.1 14.2 141 187-327 270-472 (502)
35 PRK11750 gltB glutamate syntha 99.8 7.4E-19 1.6E-23 190.3 20.2 269 42-324 832-1165(1485)
36 PRK07259 dihydroorotate dehydr 99.8 1.2E-17 2.7E-22 158.8 21.3 133 184-327 142-298 (301)
37 cd04739 DHOD_like Dihydroorota 99.8 3E-17 6.4E-22 157.7 23.5 130 188-327 152-302 (325)
38 PRK07565 dihydroorotate dehydr 99.8 1.8E-17 3.8E-22 160.0 21.4 132 187-328 153-305 (334)
39 COG0167 PyrD Dihydroorotate de 99.8 1.7E-17 3.8E-22 156.4 19.8 135 187-329 149-308 (310)
40 TIGR01037 pyrD_sub1_fam dihydr 99.8 2.1E-17 4.6E-22 157.1 19.9 132 185-327 143-298 (300)
41 PLN02826 dihydroorotate dehydr 99.8 1.5E-16 3.2E-21 156.4 23.3 123 198-328 261-407 (409)
42 PLN02495 oxidoreductase, actin 99.8 1.4E-16 3E-21 155.1 21.8 135 187-329 170-337 (385)
43 PRK07807 inosine 5-monophospha 99.7 1.1E-16 2.4E-21 160.4 21.4 142 186-327 254-458 (479)
44 KOG2550 IMP dehydrogenase/GMP 99.7 1.1E-17 2.4E-22 159.0 11.8 147 181-327 273-476 (503)
45 cd04740 DHOD_1B_like Dihydroor 99.7 3.8E-16 8.2E-21 148.2 20.3 204 75-326 63-294 (296)
46 PRK02506 dihydroorotate dehydr 99.7 2E-15 4.3E-20 144.2 20.5 132 187-326 145-305 (310)
47 cd02940 DHPD_FMN Dihydropyrimi 99.7 9E-16 2E-20 145.9 18.1 102 187-288 156-286 (299)
48 PRK08318 dihydropyrimidine deh 99.7 2.1E-15 4.5E-20 149.9 19.5 135 187-329 156-320 (420)
49 PRK05286 dihydroorotate dehydr 99.6 7.8E-15 1.7E-19 142.0 17.8 122 188-317 195-344 (344)
50 cd04741 DHOD_1A_like Dihydroor 99.6 1.8E-13 3.8E-18 129.9 19.3 119 187-313 145-294 (294)
51 cd04738 DHOD_2_like Dihydrooro 99.6 1.2E-13 2.5E-18 133.0 17.9 113 188-308 186-326 (327)
52 PF01180 DHO_dh: Dihydroorotat 99.5 8.6E-14 1.9E-18 132.1 14.8 117 189-313 152-295 (295)
53 PF03060 NMO: Nitronate monoox 99.5 1.7E-13 3.6E-18 132.1 16.4 205 64-289 6-225 (330)
54 TIGR00737 nifR3_yhdG putative 99.5 3.1E-13 6.8E-18 129.7 18.0 140 185-326 117-279 (319)
55 PRK10415 tRNA-dihydrouridine s 99.5 6.8E-13 1.5E-17 127.4 20.0 142 184-327 118-282 (321)
56 TIGR03151 enACPred_II putative 99.5 9.3E-13 2E-17 125.6 19.4 185 64-290 6-197 (307)
57 TIGR01036 pyrD_sub2 dihydrooro 99.5 1.3E-12 2.8E-17 126.0 16.3 101 188-288 192-322 (335)
58 cd02810 DHOD_DHPD_FMN Dihydroo 99.5 2.8E-12 6.1E-17 121.2 17.5 151 100-288 97-277 (289)
59 KOG1436 Dihydroorotate dehydro 99.4 2.8E-12 6E-17 118.9 13.9 121 199-327 252-396 (398)
60 COG2070 Dioxygenases related t 99.4 4.7E-12 1E-16 121.9 14.8 195 67-290 10-220 (336)
61 COG0042 tRNA-dihydrouridine sy 99.4 3.2E-11 7E-16 115.7 19.5 143 184-329 120-285 (323)
62 TIGR00742 yjbN tRNA dihydrouri 99.3 7.7E-11 1.7E-15 112.9 19.3 145 106-287 63-227 (318)
63 PRK10550 tRNA-dihydrouridine s 99.3 1E-10 2.3E-15 111.7 17.6 102 184-287 116-228 (312)
64 cd02801 DUS_like_FMN Dihydrour 99.3 1.3E-10 2.9E-15 106.0 14.9 148 106-288 63-218 (231)
65 cd02911 arch_FMN Archeal FMN-b 99.2 1.7E-10 3.7E-15 105.9 13.9 91 186-285 127-222 (233)
66 PRK11815 tRNA-dihydrouridine s 99.2 5.3E-10 1.1E-14 107.9 17.7 141 183-327 117-287 (333)
67 cd04743 NPD_PKS 2-Nitropropane 99.2 6.9E-10 1.5E-14 105.6 17.7 183 71-289 2-208 (320)
68 TIGR00736 nifR3_rel_arch TIM-b 99.2 3E-10 6.5E-15 103.7 13.8 98 187-289 123-226 (231)
69 cd04742 NPD_FabD 2-Nitropropan 99.1 3.5E-09 7.6E-14 104.1 17.9 91 189-289 153-254 (418)
70 cd04730 NPD_like 2-Nitropropan 99.1 7.5E-09 1.6E-13 94.8 18.2 105 188-296 92-198 (236)
71 TIGR02814 pfaD_fam PfaD family 99.1 8.4E-09 1.8E-13 102.1 18.0 81 207-289 168-259 (444)
72 PF01207 Dus: Dihydrouridine s 99.1 9.1E-10 2E-14 105.3 10.7 141 187-329 110-272 (309)
73 KOG1799 Dihydropyrimidine dehy 98.9 3.1E-09 6.7E-14 99.9 8.9 135 187-330 261-424 (471)
74 PRK09140 2-dehydro-3-deoxy-6-p 98.9 1.2E-07 2.7E-12 85.4 16.0 166 107-288 19-184 (206)
75 PRK06552 keto-hydroxyglutarate 98.9 1.1E-07 2.4E-12 86.1 15.6 176 97-289 10-189 (213)
76 cd02803 OYE_like_FMN_family Ol 98.8 1.3E-07 2.8E-12 90.9 17.0 102 185-288 192-316 (327)
77 KOG2335 tRNA-dihydrouridine sy 98.8 2.3E-08 5E-13 95.1 11.4 97 189-288 131-238 (358)
78 cd04729 NanE N-acetylmannosami 98.8 3.7E-08 8.1E-13 89.5 12.4 99 187-288 111-211 (219)
79 PRK00507 deoxyribose-phosphate 98.8 1.4E-08 3.1E-13 92.3 9.6 92 189-285 110-210 (221)
80 PF04131 NanE: Putative N-acet 98.8 6.6E-08 1.4E-12 84.8 12.5 96 188-288 82-178 (192)
81 KOG0399 Glutamate synthase [Am 98.8 6.6E-08 1.4E-12 102.3 14.5 243 74-326 957-1268(2142)
82 PRK01130 N-acetylmannosamine-6 98.8 7.3E-08 1.6E-12 87.7 12.7 97 189-288 109-207 (221)
83 COG0274 DeoC Deoxyribose-phosp 98.8 2.2E-08 4.8E-13 89.8 7.6 172 107-285 21-214 (228)
84 cd04732 HisA HisA. Phosphorib 98.6 3.6E-07 7.8E-12 83.6 12.3 103 185-289 59-225 (234)
85 PRK00278 trpC indole-3-glycero 98.6 9.5E-07 2.1E-11 82.5 15.2 86 199-288 160-245 (260)
86 cd04727 pdxS PdxS is a subunit 98.6 4.8E-07 1E-11 84.0 13.0 98 188-288 101-230 (283)
87 PRK13523 NADPH dehydrogenase N 98.6 3.6E-07 7.9E-12 88.4 12.8 102 185-288 193-310 (337)
88 cd00331 IGPS Indole-3-glycerol 98.6 3.8E-07 8.2E-12 82.7 11.9 49 240-288 158-206 (217)
89 cd02932 OYE_YqiM_FMN Old yello 98.6 1.4E-06 3E-11 84.3 16.4 102 185-288 205-325 (336)
90 TIGR01182 eda Entner-Doudoroff 98.6 1.2E-06 2.6E-11 78.6 14.0 164 107-288 17-181 (204)
91 cd04722 TIM_phosphate_binding 98.6 3.6E-07 7.9E-12 79.8 10.5 96 187-284 101-200 (200)
92 cd00452 KDPG_aldolase KDPG and 98.6 9.1E-07 2E-11 78.7 13.0 89 190-288 88-176 (190)
93 cd02933 OYE_like_FMN Old yello 98.6 1.4E-06 3.1E-11 84.3 15.2 100 185-288 203-319 (338)
94 TIGR00343 pyridoxal 5'-phospha 98.6 7.9E-07 1.7E-11 82.6 12.6 98 188-288 103-233 (287)
95 TIGR00007 phosphoribosylformim 98.6 7.3E-07 1.6E-11 81.5 11.8 101 187-289 60-224 (230)
96 TIGR00126 deoC deoxyribose-pho 98.6 1.2E-07 2.6E-12 85.6 6.4 93 187-284 104-205 (211)
97 TIGR00262 trpA tryptophan synt 98.5 1.3E-05 2.8E-10 74.7 19.8 51 239-291 185-235 (256)
98 cd04734 OYE_like_3_FMN Old yel 98.5 3.6E-06 7.8E-11 81.7 15.5 102 185-288 192-320 (343)
99 PRK07114 keto-hydroxyglutarate 98.5 3.7E-06 8E-11 76.5 14.3 175 97-287 12-192 (222)
100 cd04733 OYE_like_2_FMN Old yel 98.5 3.1E-06 6.6E-11 82.0 14.3 102 185-288 200-327 (338)
101 PRK04180 pyridoxal biosynthesi 98.4 3.2E-06 7E-11 78.8 12.9 98 188-288 110-239 (293)
102 COG3010 NanE Putative N-acetyl 98.4 4.7E-06 1E-10 73.7 13.1 87 199-288 126-214 (229)
103 cd04731 HisF The cyclase subun 98.4 3.2E-06 6.9E-11 78.0 12.4 75 210-289 152-229 (243)
104 PRK07695 transcriptional regul 98.4 6E-06 1.3E-10 74.0 13.6 94 191-288 86-182 (201)
105 cd04728 ThiG Thiazole synthase 98.4 2.1E-06 4.6E-11 78.3 10.6 77 207-288 131-209 (248)
106 cd02931 ER_like_FMN Enoate red 98.4 2.8E-06 6E-11 83.7 12.3 100 187-288 204-340 (382)
107 PRK13585 1-(5-phosphoribosyl)- 98.4 3.6E-06 7.8E-11 77.4 12.3 100 187-288 64-227 (241)
108 CHL00200 trpA tryptophan synth 98.4 6.1E-05 1.3E-09 70.4 20.3 47 243-291 193-239 (263)
109 PRK13587 1-(5-phosphoribosyl)- 98.4 4.8E-06 1E-10 76.6 12.4 101 186-288 63-226 (234)
110 PRK00208 thiG thiazole synthas 98.4 3.1E-06 6.8E-11 77.3 10.6 77 207-288 131-209 (250)
111 PRK06015 keto-hydroxyglutarate 98.4 1.7E-05 3.7E-10 71.1 14.8 163 107-287 13-176 (201)
112 cd04735 OYE_like_4_FMN Old yel 98.3 2.2E-06 4.7E-11 83.6 9.7 102 187-288 197-318 (353)
113 COG0107 HisF Imidazoleglycerol 98.3 3.2E-06 7E-11 76.0 9.7 119 185-318 60-251 (256)
114 PRK01033 imidazole glycerol ph 98.3 4.3E-06 9.4E-11 78.0 10.7 76 211-289 156-232 (258)
115 COG0800 Eda 2-keto-3-deoxy-6-p 98.3 7.7E-06 1.7E-10 73.1 11.7 166 106-288 21-186 (211)
116 PRK07455 keto-hydroxyglutarate 98.3 1.1E-05 2.3E-10 71.8 12.6 164 107-287 21-184 (187)
117 TIGR03572 WbuZ glycosyl amidat 98.3 7.6E-06 1.6E-10 74.9 11.4 75 210-287 156-231 (232)
118 PF01081 Aldolase: KDPG and KH 98.3 5.5E-06 1.2E-10 73.9 9.9 165 107-289 17-182 (196)
119 cd04724 Tryptophan_synthase_al 98.3 0.00012 2.6E-09 67.7 18.9 49 240-291 175-223 (242)
120 PF00977 His_biosynth: Histidi 98.2 1E-05 2.2E-10 74.2 11.3 100 187-288 61-225 (229)
121 PRK14024 phosphoribosyl isomer 98.2 4.6E-06 1E-10 77.0 8.9 77 210-289 149-228 (241)
122 PRK13125 trpA tryptophan synth 98.2 5.7E-05 1.2E-09 69.9 16.2 114 191-306 122-237 (244)
123 cd04747 OYE_like_5_FMN Old yel 98.2 2.2E-05 4.8E-10 76.6 14.0 101 185-288 195-333 (361)
124 COG0106 HisA Phosphoribosylfor 98.2 2.3E-05 5.1E-10 71.4 12.9 101 187-289 63-227 (241)
125 PF05690 ThiG: Thiazole biosyn 98.2 8.9E-06 1.9E-10 73.6 9.9 78 207-288 131-209 (247)
126 cd02930 DCR_FMN 2,4-dienoyl-Co 98.2 3.2E-05 6.9E-10 75.4 14.3 102 185-288 188-311 (353)
127 PRK08255 salicylyl-CoA 5-hydro 98.2 2.7E-05 5.8E-10 83.4 15.0 101 185-288 602-722 (765)
128 PRK05283 deoxyribose-phosphate 98.2 2.6E-06 5.5E-11 78.9 5.9 94 188-287 118-226 (257)
129 PRK02083 imidazole glycerol ph 98.2 1.4E-05 3.1E-10 74.2 10.7 75 210-289 156-233 (253)
130 cd04723 HisA_HisF Phosphoribos 98.2 2.6E-05 5.7E-10 71.6 12.2 101 187-289 66-224 (233)
131 PRK00043 thiE thiamine-phospha 98.2 4.3E-05 9.2E-10 68.6 13.3 79 208-288 112-193 (212)
132 PF00218 IGPS: Indole-3-glycer 98.2 2.8E-05 6E-10 72.2 12.1 159 114-289 72-244 (254)
133 PRK00748 1-(5-phosphoribosyl)- 98.2 1E-05 2.2E-10 73.9 9.2 77 210-289 149-226 (233)
134 TIGR00735 hisF imidazoleglycer 98.1 1.7E-05 3.6E-10 73.9 10.0 75 210-289 158-235 (254)
135 PRK04128 1-(5-phosphoribosyl)- 98.1 3.2E-05 6.9E-10 70.9 11.0 102 187-289 61-217 (228)
136 CHL00162 thiG thiamin biosynth 98.1 2.1E-05 4.5E-10 72.0 9.5 79 207-289 145-224 (267)
137 PRK05848 nicotinate-nucleotide 98.0 5.8E-05 1.3E-09 70.8 12.1 89 188-287 169-261 (273)
138 cd04731 HisF The cyclase subun 98.0 4.2E-05 9.1E-10 70.5 11.0 76 210-288 30-105 (243)
139 PRK14114 1-(5-phosphoribosyl)- 98.0 6.1E-05 1.3E-09 69.6 11.3 100 187-289 62-229 (241)
140 COG1902 NemA NADH:flavin oxido 98.0 5.6E-05 1.2E-09 73.8 11.6 99 188-288 203-323 (363)
141 cd02929 TMADH_HD_FMN Trimethyl 98.0 0.00017 3.6E-09 70.8 14.8 102 184-288 200-324 (370)
142 PRK13957 indole-3-glycerol-pho 98.0 0.00026 5.6E-09 65.4 15.0 87 198-289 150-236 (247)
143 TIGR00735 hisF imidazoleglycer 98.0 8E-05 1.7E-09 69.3 11.7 77 209-288 31-108 (254)
144 PRK05718 keto-hydroxyglutarate 98.0 0.00027 5.9E-09 64.0 14.5 172 98-287 13-187 (212)
145 PRK02083 imidazole glycerol ph 98.0 4.8E-05 1E-09 70.7 9.9 76 210-288 33-108 (253)
146 cd00959 DeoC 2-deoxyribose-5-p 98.0 6.5E-05 1.4E-09 67.5 10.4 90 187-282 103-202 (203)
147 TIGR01919 hisA-trpF 1-(5-phosp 98.0 8.3E-05 1.8E-09 68.8 11.3 101 187-289 62-231 (243)
148 PRK13111 trpA tryptophan synth 98.0 0.00038 8.3E-09 64.9 15.8 104 185-291 125-236 (258)
149 cd00564 TMP_TenI Thiamine mono 97.9 0.00015 3.2E-09 63.8 12.3 78 208-288 103-183 (196)
150 PRK07428 nicotinate-nucleotide 97.9 0.00055 1.2E-08 64.8 16.2 92 189-288 184-276 (288)
151 TIGR01304 IMP_DH_rel_2 IMP deh 97.9 7.3E-05 1.6E-09 73.0 10.4 93 186-284 120-217 (369)
152 PRK08883 ribulose-phosphate 3- 97.9 0.0016 3.5E-08 59.3 18.4 95 191-288 99-200 (220)
153 cd01573 modD_like ModD; Quinol 97.9 0.00074 1.6E-08 63.5 16.4 88 188-286 171-261 (272)
154 PF00724 Oxidored_FMN: NADH:fl 97.9 0.00025 5.4E-09 68.8 13.5 101 186-288 201-326 (341)
155 PRK05742 nicotinate-nucleotide 97.8 0.00094 2E-08 62.8 16.3 86 190-287 179-265 (277)
156 PRK08385 nicotinate-nucleotide 97.8 0.00098 2.1E-08 62.7 16.1 149 111-287 106-263 (278)
157 TIGR03128 RuMP_HxlA 3-hexulose 97.8 0.00029 6.2E-09 63.2 12.0 95 190-288 94-191 (206)
158 TIGR01163 rpe ribulose-phospha 97.8 0.0016 3.5E-08 58.2 16.7 89 199-288 104-198 (210)
159 PRK09427 bifunctional indole-3 97.8 0.00012 2.6E-09 73.4 10.1 106 207-325 166-271 (454)
160 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00024 5.1E-09 64.9 11.3 76 210-288 33-108 (233)
161 PLN02591 tryptophan synthase 97.8 0.0013 2.8E-08 61.1 16.1 106 184-291 113-226 (250)
162 PRK07226 fructose-bisphosphate 97.8 0.00037 8E-09 65.4 12.5 87 191-288 131-236 (267)
163 cd04726 KGPDC_HPS 3-Keto-L-gul 97.8 0.00037 8E-09 62.1 11.7 94 190-288 95-191 (202)
164 PRK08649 inosine 5-monophospha 97.7 0.00014 3.1E-09 71.1 9.5 94 187-284 120-216 (368)
165 cd00958 DhnA Class I fructose- 97.7 0.00046 1E-08 63.2 12.4 88 190-288 110-219 (235)
166 COG0159 TrpA Tryptophan syntha 97.7 0.0073 1.6E-07 56.2 19.9 123 187-312 81-262 (265)
167 PRK06512 thiamine-phosphate py 97.7 0.00062 1.3E-08 62.1 12.7 95 191-288 100-197 (221)
168 COG2022 ThiG Uncharacterized e 97.7 0.0003 6.5E-09 63.5 9.9 77 208-288 139-216 (262)
169 cd04732 HisA HisA. Phosphorib 97.7 0.00023 5E-09 65.0 9.6 76 210-288 32-107 (234)
170 PRK13802 bifunctional indole-3 97.7 0.00032 7E-09 73.7 11.7 49 241-289 198-246 (695)
171 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00018 4E-09 65.5 8.7 71 213-289 147-219 (221)
172 PRK07107 inosine 5-monophospha 97.7 0.0012 2.7E-08 67.1 15.5 68 211-283 245-312 (502)
173 PRK06806 fructose-bisphosphate 97.7 0.018 3.9E-07 54.5 22.2 109 207-319 152-278 (281)
174 TIGR00693 thiE thiamine-phosph 97.7 0.00078 1.7E-08 59.8 12.4 80 207-288 103-185 (196)
175 TIGR00078 nadC nicotinate-nucl 97.7 0.00071 1.5E-08 63.3 12.5 86 190-286 167-253 (265)
176 PLN02334 ribulose-phosphate 3- 97.7 0.00098 2.1E-08 61.0 13.2 116 189-313 106-226 (229)
177 COG0134 TrpC Indole-3-glycerol 97.7 0.0025 5.4E-08 58.9 15.5 96 190-289 147-242 (254)
178 PRK07028 bifunctional hexulose 97.6 0.00053 1.2E-08 68.6 12.1 94 190-288 99-195 (430)
179 PRK08072 nicotinate-nucleotide 97.6 0.003 6.4E-08 59.5 16.1 88 189-287 176-264 (277)
180 PRK11840 bifunctional sulfur c 97.6 0.00033 7.2E-09 66.7 9.7 78 207-288 205-283 (326)
181 PRK10605 N-ethylmaleimide redu 97.6 0.00067 1.5E-08 66.4 12.1 95 188-288 213-326 (362)
182 PRK14024 phosphoribosyl isomer 97.6 0.0005 1.1E-08 63.5 10.6 75 210-288 35-109 (241)
183 PRK02615 thiamine-phosphate py 97.6 0.001 2.2E-08 64.5 13.1 95 191-288 230-327 (347)
184 cd01572 QPRTase Quinolinate ph 97.6 0.00072 1.6E-08 63.4 11.7 87 190-287 171-258 (268)
185 PTZ00170 D-ribulose-5-phosphat 97.6 0.0081 1.8E-07 55.0 18.4 62 242-311 162-223 (228)
186 cd01568 QPRTase_NadC Quinolina 97.5 0.0013 2.8E-08 61.8 12.2 86 190-286 170-258 (269)
187 TIGR01859 fruc_bis_ald_ fructo 97.5 0.028 6.2E-07 53.1 21.1 108 208-319 153-279 (282)
188 PLN02446 (5-phosphoribosyl)-5- 97.5 0.0007 1.5E-08 63.0 9.9 98 187-287 72-242 (262)
189 PRK06559 nicotinate-nucleotide 97.5 0.0049 1.1E-07 58.3 15.5 87 189-287 185-273 (290)
190 COG0352 ThiE Thiamine monophos 97.5 0.0027 5.9E-08 57.4 13.3 95 191-288 94-191 (211)
191 PLN02617 imidazole glycerol ph 97.5 0.00093 2E-08 68.5 11.4 47 241-289 471-518 (538)
192 PF04481 DUF561: Protein of un 97.5 0.0027 5.9E-08 56.9 12.8 99 185-288 99-219 (242)
193 cd00956 Transaldolase_FSA Tran 97.5 0.0026 5.7E-08 57.6 13.1 100 189-292 92-194 (211)
194 TIGR01949 AroFGH_arch predicte 97.5 0.0015 3.3E-08 60.8 11.8 85 193-288 130-232 (258)
195 PF01791 DeoC: DeoC/LacD famil 97.5 0.00092 2E-08 61.4 10.1 95 189-287 112-234 (236)
196 PRK08745 ribulose-phosphate 3- 97.5 0.018 4E-07 52.5 18.3 95 190-287 102-203 (223)
197 PF00290 Trp_syntA: Tryptophan 97.4 0.011 2.5E-07 55.1 16.9 50 242-294 188-237 (259)
198 TIGR02129 hisA_euk phosphoribo 97.4 0.0021 4.5E-08 59.6 11.8 100 187-288 64-237 (253)
199 TIGR00875 fsa_talC_mipB fructo 97.4 0.0058 1.3E-07 55.4 14.3 113 189-305 92-209 (213)
200 PRK04302 triosephosphate isome 97.4 0.0037 7.9E-08 57.0 13.1 96 191-289 107-208 (223)
201 cd00945 Aldolase_Class_I Class 97.4 0.002 4.4E-08 56.5 11.1 92 188-283 100-201 (201)
202 PRK06096 molybdenum transport 97.4 0.0072 1.6E-07 57.1 14.9 85 189-285 178-266 (284)
203 PF01729 QRPTase_C: Quinolinat 97.3 0.0032 7E-08 55.0 11.5 92 189-288 68-160 (169)
204 PRK09016 quinolinate phosphori 97.3 0.0076 1.7E-07 57.1 14.8 87 189-287 197-284 (296)
205 TIGR01182 eda Entner-Doudoroff 97.3 0.0016 3.4E-08 58.6 9.7 81 187-282 46-127 (204)
206 PRK06978 nicotinate-nucleotide 97.3 0.009 2E-07 56.5 15.2 86 190-287 195-281 (294)
207 TIGR01334 modD putative molybd 97.3 0.0092 2E-07 56.2 15.1 86 189-286 177-266 (277)
208 PRK04128 1-(5-phosphoribosyl)- 97.3 0.0012 2.5E-08 60.6 8.8 73 211-287 34-106 (228)
209 COG0036 Rpe Pentose-5-phosphat 97.3 0.03 6.5E-07 50.7 17.2 66 237-309 150-217 (220)
210 TIGR00007 phosphoribosylformim 97.3 0.0035 7.5E-08 57.2 11.6 76 210-288 31-106 (230)
211 TIGR03572 WbuZ glycosyl amidat 97.3 0.0018 4E-08 59.2 9.8 76 210-288 33-108 (232)
212 PRK13585 1-(5-phosphoribosyl)- 97.3 0.0015 3.2E-08 60.1 9.2 75 210-287 35-109 (241)
213 PRK07896 nicotinate-nucleotide 97.3 0.013 2.8E-07 55.4 15.6 87 189-287 188-278 (289)
214 PF02581 TMP-TENI: Thiamine mo 97.3 0.0036 7.8E-08 55.0 11.1 77 207-286 102-180 (180)
215 COG0214 SNZ1 Pyridoxine biosyn 97.2 0.0014 3E-08 59.3 8.2 101 187-289 65-243 (296)
216 cd00405 PRAI Phosphoribosylant 97.2 0.0022 4.8E-08 57.4 9.8 97 187-288 84-186 (203)
217 TIGR02129 hisA_euk phosphoribo 97.2 0.0012 2.6E-08 61.2 8.2 69 210-288 41-109 (253)
218 PRK13587 1-(5-phosphoribosyl)- 97.2 0.0019 4.2E-08 59.4 9.3 77 209-288 32-110 (234)
219 PRK12656 fructose-6-phosphate 97.2 0.016 3.6E-07 52.7 14.8 114 189-306 96-214 (222)
220 COG0107 HisF Imidazoleglycerol 97.2 0.0027 5.8E-08 57.5 9.3 76 210-288 33-108 (256)
221 PRK06106 nicotinate-nucleotide 97.2 0.006 1.3E-07 57.5 12.0 87 189-287 182-270 (281)
222 PRK01362 putative translaldola 97.1 0.018 3.9E-07 52.2 14.6 113 189-305 92-209 (214)
223 PRK01033 imidazole glycerol ph 97.1 0.0052 1.1E-07 57.3 11.2 76 210-288 33-108 (258)
224 PRK04169 geranylgeranylglycery 97.1 0.0033 7E-08 57.7 9.3 66 218-288 152-218 (232)
225 PF00977 His_biosynth: Histidi 97.1 0.0035 7.5E-08 57.5 9.4 76 210-288 32-107 (229)
226 PRK08005 epimerase; Validated 97.1 0.063 1.4E-06 48.6 17.1 94 190-287 98-195 (210)
227 PRK09722 allulose-6-phosphate 97.1 0.025 5.3E-07 51.9 14.6 68 238-310 150-220 (229)
228 PRK11750 gltB glutamate syntha 97.0 0.0054 1.2E-07 68.6 12.0 120 211-330 601-734 (1485)
229 cd04723 HisA_HisF Phosphoribos 97.0 0.0034 7.4E-08 57.6 8.9 74 210-287 38-111 (233)
230 PRK06801 hypothetical protein; 97.0 0.094 2E-06 49.7 18.7 107 208-319 156-283 (286)
231 PLN02460 indole-3-glycerol-pho 97.0 0.0086 1.9E-07 57.7 11.8 166 114-289 143-323 (338)
232 PRK12376 putative translaldola 97.0 0.02 4.4E-07 52.6 13.7 115 188-306 102-229 (236)
233 PF04898 Glu_syn_central: Glut 97.0 0.0084 1.8E-07 56.5 11.4 120 211-330 146-280 (287)
234 PRK06543 nicotinate-nucleotide 97.0 0.0089 1.9E-07 56.3 11.5 87 189-287 181-269 (281)
235 PLN02411 12-oxophytodienoate r 97.0 0.0072 1.6E-07 59.8 11.2 98 188-288 219-347 (391)
236 PRK13586 1-(5-phosphoribosyl)- 97.0 0.0039 8.4E-08 57.3 8.6 72 211-288 150-223 (232)
237 cd02812 PcrB_like PcrB_like pr 96.9 0.005 1.1E-07 56.0 9.0 69 213-288 141-209 (219)
238 PF01884 PcrB: PcrB family; I 96.9 0.0066 1.4E-07 55.5 9.7 69 216-289 149-217 (230)
239 PRK12653 fructose-6-phosphate 96.9 0.036 7.9E-07 50.5 14.5 113 189-305 94-211 (220)
240 PF04131 NanE: Putative N-acet 96.9 0.0037 8.1E-08 55.1 7.7 89 187-283 20-119 (192)
241 PRK06552 keto-hydroxyglutarate 96.9 0.0069 1.5E-07 54.9 9.6 81 187-282 51-135 (213)
242 PRK13813 orotidine 5'-phosphat 96.9 0.0038 8.3E-08 56.4 7.6 118 186-310 42-213 (215)
243 PLN02898 HMP-P kinase/thiamin- 96.8 0.019 4.2E-07 58.6 13.4 95 191-288 380-480 (502)
244 PRK13586 1-(5-phosphoribosyl)- 96.8 0.013 2.7E-07 53.9 10.9 75 210-288 33-107 (232)
245 PRK12655 fructose-6-phosphate 96.8 0.048 1E-06 49.6 14.3 113 190-306 95-212 (220)
246 KOG2334 tRNA-dihydrouridine sy 96.8 0.0055 1.2E-07 59.9 8.4 98 189-289 139-248 (477)
247 cd00452 KDPG_aldolase KDPG and 96.8 0.013 2.8E-07 52.0 10.3 79 189-282 44-123 (190)
248 PRK03512 thiamine-phosphate py 96.7 0.037 8.1E-07 50.1 13.2 79 208-288 110-191 (211)
249 PRK04180 pyridoxal biosynthesi 96.7 0.03 6.4E-07 52.7 12.6 85 187-282 62-147 (293)
250 PRK12290 thiE thiamine-phospha 96.7 0.027 5.9E-07 56.0 12.9 96 192-288 291-397 (437)
251 cd00429 RPE Ribulose-5-phospha 96.7 0.015 3.2E-07 51.9 10.3 76 211-288 119-199 (211)
252 PF03437 BtpA: BtpA family; I 96.7 0.037 8E-07 51.5 13.0 70 211-288 162-232 (254)
253 PRK14114 1-(5-phosphoribosyl)- 96.7 0.01 2.2E-07 54.8 9.3 73 211-287 34-106 (241)
254 TIGR00259 thylakoid_BtpA membr 96.7 0.011 2.5E-07 54.9 9.4 69 211-287 161-231 (257)
255 PRK07998 gatY putative fructos 96.7 0.29 6.4E-06 46.3 18.8 107 208-319 153-278 (283)
256 PRK06015 keto-hydroxyglutarate 96.7 0.013 2.9E-07 52.5 9.4 81 187-282 42-123 (201)
257 PF01081 Aldolase: KDPG and KH 96.6 0.014 3E-07 52.2 9.3 81 187-282 46-127 (196)
258 TIGR01769 GGGP geranylgeranylg 96.6 0.011 2.5E-07 53.1 8.8 66 213-283 140-205 (205)
259 cd00381 IMPDH IMPDH: The catal 96.6 0.026 5.7E-07 54.5 11.9 67 211-283 97-163 (325)
260 PRK05581 ribulose-phosphate 3- 96.6 0.028 6E-07 50.7 11.3 97 190-288 101-203 (220)
261 KOG2333 Uncharacterized conser 96.6 0.016 3.5E-07 57.6 9.9 99 191-289 381-496 (614)
262 TIGR02134 transald_staph trans 96.6 0.062 1.3E-06 49.4 13.2 100 188-291 102-207 (236)
263 COG0269 SgbH 3-hexulose-6-phos 96.6 0.05 1.1E-06 49.0 12.2 113 189-310 96-213 (217)
264 TIGR01768 GGGP-family geranylg 96.5 0.016 3.5E-07 52.8 9.2 66 219-288 148-213 (223)
265 cd04727 pdxS PdxS is a subunit 96.5 0.058 1.3E-06 50.6 13.0 113 187-315 53-167 (283)
266 PRK13397 3-deoxy-7-phosphohept 96.5 0.27 5.9E-06 45.6 17.1 97 187-286 111-222 (250)
267 TIGR01919 hisA-trpF 1-(5-phosp 96.5 0.017 3.6E-07 53.5 9.2 73 211-287 35-107 (243)
268 PRK13307 bifunctional formalde 96.4 0.037 8E-07 54.6 11.8 93 191-288 269-363 (391)
269 PRK07315 fructose-bisphosphate 96.4 0.099 2.2E-06 49.7 14.3 79 208-288 154-237 (293)
270 PLN02716 nicotinate-nucleotide 96.4 0.047 1E-06 52.0 12.0 93 190-287 189-294 (308)
271 TIGR00343 pyridoxal 5'-phospha 96.4 0.026 5.6E-07 52.9 10.0 85 187-282 55-140 (287)
272 PRK08999 hypothetical protein; 96.4 0.016 3.6E-07 55.2 8.9 76 208-286 234-311 (312)
273 PRK13306 ulaD 3-keto-L-gulonat 96.3 0.061 1.3E-06 48.8 11.8 117 188-311 44-213 (216)
274 PRK06843 inosine 5-monophospha 96.3 0.018 4E-07 56.9 8.7 67 211-283 156-222 (404)
275 PLN02446 (5-phosphoribosyl)-5- 96.3 0.022 4.8E-07 53.1 8.7 71 210-288 46-116 (262)
276 KOG4201 Anthranilate synthase 96.3 0.052 1.1E-06 48.8 10.6 97 188-289 175-272 (289)
277 PRK09140 2-dehydro-3-deoxy-6-p 96.3 0.037 7.9E-07 49.9 9.9 80 188-282 49-130 (206)
278 PRK08227 autoinducer 2 aldolas 96.2 0.069 1.5E-06 50.0 11.5 84 191-288 132-231 (264)
279 PRK07114 keto-hydroxyglutarate 96.1 0.033 7.2E-07 50.8 8.8 80 188-282 54-138 (222)
280 PF00834 Ribul_P_3_epim: Ribul 96.0 0.045 9.8E-07 49.1 9.1 48 239-287 148-198 (201)
281 PRK08185 hypothetical protein; 96.0 1.5 3.3E-05 41.5 21.7 109 208-319 149-277 (283)
282 PLN02591 tryptophan synthase 95.9 0.13 2.9E-06 47.7 12.1 138 69-228 76-219 (250)
283 PRK05718 keto-hydroxyglutarate 95.9 0.078 1.7E-06 48.0 10.1 81 187-282 53-134 (212)
284 COG0157 NadC Nicotinate-nucleo 95.9 0.11 2.4E-06 48.6 11.2 89 187-286 173-265 (280)
285 CHL00200 trpA tryptophan synth 95.8 0.16 3.4E-06 47.6 12.2 40 189-228 192-232 (263)
286 TIGR01302 IMP_dehydrog inosine 95.8 0.042 9.2E-07 55.4 8.8 68 210-283 226-293 (450)
287 PF00478 IMPDH: IMP dehydrogen 95.8 0.098 2.1E-06 50.9 10.9 68 210-283 110-177 (352)
288 cd04728 ThiG Thiazole synthase 95.7 0.16 3.4E-06 46.8 11.5 114 91-228 79-205 (248)
289 PRK12595 bifunctional 3-deoxy- 95.7 1.5 3.2E-05 43.0 19.0 97 187-286 214-325 (360)
290 PLN02617 imidazole glycerol ph 95.7 0.06 1.3E-06 55.4 9.7 76 211-288 271-359 (538)
291 PLN02274 inosine-5'-monophosph 95.7 0.054 1.2E-06 55.4 9.3 68 210-283 250-317 (505)
292 PLN02417 dihydrodipicolinate s 95.7 0.11 2.3E-06 49.1 10.7 92 213-307 28-124 (280)
293 PTZ00314 inosine-5'-monophosph 95.7 0.055 1.2E-06 55.2 9.3 230 42-283 19-310 (495)
294 PRK09517 multifunctional thiam 95.7 0.21 4.6E-06 53.6 14.2 85 203-288 103-199 (755)
295 PRK08091 ribulose-phosphate 3- 95.6 0.3 6.4E-06 44.8 12.9 96 189-287 107-211 (228)
296 PRK03620 5-dehydro-4-deoxygluc 95.4 0.14 3E-06 48.9 10.6 92 213-308 34-130 (303)
297 PRK01130 N-acetylmannosamine-6 95.4 0.22 4.8E-06 45.1 11.5 92 187-283 44-146 (221)
298 TIGR02313 HpaI-NOT-DapA 2,4-di 95.4 0.15 3.4E-06 48.4 10.8 93 213-308 27-124 (294)
299 cd04740 DHOD_1B_like Dihydroor 95.4 0.66 1.4E-05 43.9 15.0 91 190-282 80-185 (296)
300 cd00951 KDGDH 5-dehydro-4-deox 95.4 0.15 3.3E-06 48.3 10.5 92 213-308 27-123 (289)
301 COG0106 HisA Phosphoribosylfor 95.3 0.13 2.9E-06 47.2 9.5 73 210-286 34-107 (241)
302 KOG1606 Stationary phase-induc 95.3 0.17 3.7E-06 45.4 9.8 89 197-288 123-243 (296)
303 cd00408 DHDPS-like Dihydrodipi 95.3 0.19 4.1E-06 47.1 11.0 92 213-307 24-120 (281)
304 TIGR00262 trpA tryptophan synt 95.3 0.28 6.2E-06 45.7 12.0 41 187-227 186-227 (256)
305 cd02810 DHOD_DHPD_FMN Dihydroo 95.3 0.69 1.5E-05 43.5 14.6 92 190-283 88-196 (289)
306 PRK06852 aldolase; Validated 95.2 0.19 4.1E-06 48.0 10.4 90 194-288 162-270 (304)
307 TIGR01305 GMP_reduct_1 guanosi 95.2 0.23 5E-06 47.8 11.0 95 183-283 75-178 (343)
308 cd00952 CHBPH_aldolase Trans-o 95.2 0.18 4E-06 48.2 10.5 92 214-308 36-132 (309)
309 PRK00208 thiG thiazole synthas 95.1 0.33 7.2E-06 44.8 11.5 114 91-228 79-205 (250)
310 COG0329 DapA Dihydrodipicolina 95.1 0.23 4.9E-06 47.4 10.9 92 214-308 32-128 (299)
311 cd04729 NanE N-acetylmannosami 95.0 0.43 9.3E-06 43.1 12.1 92 187-283 48-150 (219)
312 PRK07807 inosine 5-monophospha 95.0 0.12 2.6E-06 52.5 9.2 67 211-283 230-296 (479)
313 cd00439 Transaldolase Transald 95.0 0.51 1.1E-05 43.9 12.5 95 190-290 131-241 (252)
314 cd01571 NAPRTase_B Nicotinate 94.9 0.22 4.9E-06 47.5 10.3 94 189-288 172-278 (302)
315 PRK13111 trpA tryptophan synth 94.9 0.24 5.3E-06 46.2 10.2 40 188-228 189-229 (258)
316 PRK14057 epimerase; Provisiona 94.9 0.52 1.1E-05 43.8 12.2 94 189-287 114-225 (254)
317 TIGR00734 hisAF_rel hisA/hisF 94.9 0.14 3E-06 46.7 8.4 72 210-287 39-112 (221)
318 TIGR01303 IMP_DH_rel_1 IMP deh 94.8 0.15 3.3E-06 51.7 9.3 68 210-283 227-294 (475)
319 COG0800 Eda 2-keto-3-deoxy-6-p 94.8 0.11 2.5E-06 46.7 7.4 80 187-281 51-131 (211)
320 TIGR00683 nanA N-acetylneurami 94.8 0.3 6.4E-06 46.3 10.7 92 213-307 27-124 (290)
321 PRK07565 dihydroorotate dehydr 94.8 0.35 7.6E-06 46.8 11.4 95 189-285 91-199 (334)
322 TIGR03249 KdgD 5-dehydro-4-deo 94.8 0.28 6E-06 46.6 10.5 92 213-308 32-128 (296)
323 TIGR01306 GMP_reduct_2 guanosi 94.8 0.42 9E-06 46.0 11.6 78 200-283 83-165 (321)
324 COG3010 NanE Putative N-acetyl 94.7 0.34 7.3E-06 43.4 10.0 89 187-282 54-153 (229)
325 PRK13957 indole-3-glycerol-pho 94.7 0.41 8.8E-06 44.4 11.0 71 211-287 65-135 (247)
326 PLN02460 indole-3-glycerol-pho 94.7 0.2 4.2E-06 48.5 9.2 91 187-286 168-261 (338)
327 cd00516 PRTase_typeII Phosphor 94.7 0.38 8.3E-06 45.2 11.1 95 189-288 170-272 (281)
328 cd00331 IGPS Indole-3-glycerol 94.6 0.15 3.3E-06 45.9 7.9 72 210-287 34-105 (217)
329 PRK04147 N-acetylneuraminate l 94.6 0.35 7.7E-06 45.8 10.7 92 213-307 30-127 (293)
330 PRK05096 guanosine 5'-monophos 94.6 0.39 8.5E-06 46.3 10.8 67 211-283 111-179 (346)
331 PRK05458 guanosine 5'-monophos 94.5 0.21 4.5E-06 48.2 8.8 67 211-283 100-168 (326)
332 TIGR00674 dapA dihydrodipicoli 94.4 0.42 9.2E-06 45.1 10.7 93 213-308 25-122 (285)
333 PF00701 DHDPS: Dihydrodipicol 94.3 0.32 7E-06 45.9 9.8 92 212-306 27-123 (289)
334 PRK05567 inosine 5'-monophosph 94.3 0.32 7E-06 49.6 10.4 68 210-283 230-297 (486)
335 cd00954 NAL N-Acetylneuraminic 94.3 0.42 9E-06 45.2 10.5 93 213-308 27-125 (288)
336 cd00957 Transaldolase_TalAB Tr 94.2 0.57 1.2E-05 45.0 11.2 101 187-292 134-252 (313)
337 COG0159 TrpA Tryptophan syntha 94.2 0.79 1.7E-05 42.8 11.7 39 188-227 194-233 (265)
338 cd00950 DHDPS Dihydrodipicolin 94.2 0.5 1.1E-05 44.4 10.8 92 213-307 27-123 (284)
339 COG0134 TrpC Indole-3-glycerol 94.1 0.24 5.1E-06 46.0 8.0 93 187-288 95-188 (254)
340 COG2876 AroA 3-deoxy-D-arabino 94.1 1.3 2.9E-05 41.2 12.7 94 187-283 141-249 (286)
341 TIGR00736 nifR3_rel_arch TIM-b 94.0 0.63 1.4E-05 42.7 10.7 42 186-227 177-220 (231)
342 CHL00162 thiG thiamin biosynth 94.0 0.55 1.2E-05 43.4 10.1 97 107-227 121-218 (267)
343 PRK00230 orotidine 5'-phosphat 93.9 0.17 3.8E-06 46.3 6.8 79 211-310 139-228 (230)
344 PF05690 ThiG: Thiazole biosyn 93.9 0.57 1.2E-05 42.9 9.8 113 91-227 79-204 (247)
345 cd00945 Aldolase_Class_I Class 93.9 0.78 1.7E-05 39.9 10.8 82 212-307 18-108 (201)
346 PTZ00411 transaldolase-like pr 93.9 0.83 1.8E-05 44.2 11.6 102 187-292 146-264 (333)
347 cd00377 ICL_PEPM Members of th 93.8 0.52 1.1E-05 43.6 9.9 97 190-286 60-183 (243)
348 COG0176 MipB Transaldolase [Ca 93.8 1.5 3.2E-05 40.4 12.5 116 187-306 101-231 (239)
349 PRK03170 dihydrodipicolinate s 93.8 0.62 1.3E-05 44.0 10.5 93 213-308 28-125 (292)
350 COG2022 ThiG Uncharacterized e 93.7 0.42 9.2E-06 43.6 8.5 97 107-227 114-211 (262)
351 PF04309 G3P_antiterm: Glycero 93.5 0.076 1.7E-06 46.6 3.5 89 188-288 81-174 (175)
352 cd04726 KGPDC_HPS 3-Keto-L-gul 93.4 0.86 1.9E-05 40.3 10.3 87 188-283 41-133 (202)
353 PRK12858 tagatose 1,6-diphosph 93.4 0.31 6.8E-06 47.3 7.9 74 213-289 190-282 (340)
354 PRK09250 fructose-bisphosphate 93.2 0.85 1.9E-05 44.2 10.4 76 213-288 223-323 (348)
355 PLN02979 glycolate oxidase 93.2 0.81 1.7E-05 44.8 10.3 92 187-284 111-252 (366)
356 COG0135 TrpF Phosphoribosylant 93.1 0.94 2E-05 40.9 10.0 97 182-286 81-186 (208)
357 COG1830 FbaB DhnA-type fructos 93.1 1.3 2.8E-05 41.3 11.1 84 194-288 138-242 (265)
358 PRK13125 trpA tryptophan synth 93.1 2.8 6E-05 38.7 13.4 40 188-227 173-214 (244)
359 PRK07709 fructose-bisphosphate 93.0 1.4 2.9E-05 41.9 11.4 45 184-228 188-234 (285)
360 COG1646 Predicted phosphate-bi 93.0 0.17 3.7E-06 46.1 5.1 63 219-288 163-225 (240)
361 PRK07455 keto-hydroxyglutarate 92.8 1.5 3.3E-05 38.8 10.9 79 189-282 52-131 (187)
362 PRK07709 fructose-bisphosphate 92.8 2.9 6.3E-05 39.6 13.3 107 208-319 156-282 (285)
363 PF09370 TIM-br_sig_trns: TIM- 92.8 1 2.3E-05 41.9 9.9 114 190-310 139-266 (268)
364 PRK12309 transaldolase/EF-hand 92.7 1.5 3.4E-05 43.3 11.6 100 187-291 140-257 (391)
365 cd02809 alpha_hydroxyacid_oxid 92.6 1.4 3E-05 41.9 11.0 88 191-283 107-200 (299)
366 TIGR01858 tag_bisphos_ald clas 92.5 1.7 3.7E-05 41.1 11.2 45 184-228 185-231 (282)
367 PLN02493 probable peroxisomal 92.5 1.1 2.4E-05 44.0 10.2 91 191-284 113-253 (367)
368 PLN02535 glycolate oxidase 92.4 1.2 2.5E-05 43.8 10.3 90 191-283 115-251 (364)
369 COG0352 ThiE Thiamine monophos 92.3 0.53 1.1E-05 42.6 7.2 80 189-286 55-134 (211)
370 PRK05269 transaldolase B; Prov 92.3 1.9 4.1E-05 41.5 11.4 100 187-291 136-253 (318)
371 cd04724 Tryptophan_synthase_al 92.3 2.1 4.5E-05 39.5 11.4 134 71-227 76-215 (242)
372 TIGR00874 talAB transaldolase. 92.3 2.2 4.7E-05 41.1 11.7 100 187-291 134-251 (317)
373 PRK12346 transaldolase A; Prov 92.1 2.3 5.1E-05 40.8 11.7 101 187-292 135-253 (316)
374 COG3142 CutC Uncharacterized p 92.1 6.8 0.00015 35.8 13.9 87 187-278 102-195 (241)
375 KOG3111 D-ribulose-5-phosphate 92.0 1.6 3.5E-05 38.8 9.6 113 189-312 103-220 (224)
376 PRK12737 gatY tagatose-bisphos 92.0 2.4 5.1E-05 40.2 11.6 46 183-228 186-233 (284)
377 PF00290 Trp_syntA: Tryptophan 91.9 0.65 1.4E-05 43.4 7.6 39 189-228 188-227 (259)
378 PRK12738 kbaY tagatose-bisphos 91.8 2.6 5.5E-05 40.0 11.6 44 184-227 187-232 (286)
379 PRK08673 3-deoxy-7-phosphohept 91.8 3.5 7.6E-05 40.0 12.7 127 187-317 189-333 (335)
380 cd02812 PcrB_like PcrB_like pr 91.7 0.4 8.7E-06 43.6 5.8 42 187-228 162-205 (219)
381 TIGR01768 GGGP-family geranylg 91.7 0.43 9.3E-06 43.5 6.0 43 186-228 165-209 (223)
382 PRK08610 fructose-bisphosphate 91.5 2.9 6.2E-05 39.7 11.5 46 183-228 187-234 (286)
383 PRK09195 gatY tagatose-bisphos 91.4 2.8 6.1E-05 39.7 11.4 44 184-227 187-232 (284)
384 TIGR02317 prpB methylisocitrat 91.4 1 2.2E-05 42.7 8.4 83 199-283 12-108 (285)
385 PRK11320 prpB 2-methylisocitra 91.3 1.1 2.4E-05 42.6 8.5 82 199-282 16-112 (292)
386 PF01207 Dus: Dihydrouridine s 91.3 0.99 2.2E-05 43.2 8.4 43 185-227 169-213 (309)
387 PRK13398 3-deoxy-7-phosphohept 91.2 3.2 6.9E-05 38.9 11.5 98 187-287 123-235 (266)
388 PRK05835 fructose-bisphosphate 91.2 7.1 0.00015 37.4 13.9 109 208-319 155-304 (307)
389 PF03932 CutC: CutC family; I 91.1 2.1 4.5E-05 38.5 9.7 93 184-281 98-197 (201)
390 cd04739 DHOD_like Dihydroorota 91.1 3 6.4E-05 40.2 11.5 94 190-285 90-197 (325)
391 TIGR00167 cbbA ketose-bisphosp 91.0 6.8 0.00015 37.2 13.6 108 208-319 158-285 (288)
392 TIGR03569 NeuB_NnaB N-acetylne 91.0 16 0.00034 35.4 19.5 126 187-319 122-261 (329)
393 TIGR01361 DAHP_synth_Bsub phos 90.9 3.2 6.9E-05 38.8 11.2 97 187-286 121-232 (260)
394 PF03932 CutC: CutC family; I 90.9 2.2 4.8E-05 38.3 9.7 70 208-284 8-93 (201)
395 TIGR01769 GGGP geranylgeranylg 90.9 0.52 1.1E-05 42.5 5.7 40 187-226 164-204 (205)
396 PRK12457 2-dehydro-3-deoxyphos 90.9 2.7 5.8E-05 39.5 10.4 128 187-317 119-273 (281)
397 PRK03903 transaldolase; Provis 90.4 7.5 0.00016 36.6 13.1 104 190-294 89-221 (274)
398 cd02922 FCB2_FMN Flavocytochro 90.4 3.4 7.3E-05 40.3 11.2 83 199-284 117-242 (344)
399 KOG2335 tRNA-dihydrouridine sy 90.4 3.4 7.4E-05 40.1 11.0 44 184-227 187-233 (358)
400 PF13714 PEP_mutase: Phosphoen 90.4 2.6 5.7E-05 38.8 9.9 84 199-284 8-106 (238)
401 PRK12857 fructose-1,6-bisphosp 90.3 4.2 9.2E-05 38.5 11.5 46 183-228 186-233 (284)
402 PRK12738 kbaY tagatose-bisphos 90.2 9.8 0.00021 36.1 13.9 106 208-319 155-281 (286)
403 PRK08610 fructose-bisphosphate 90.2 8.8 0.00019 36.4 13.5 107 208-319 156-282 (286)
404 cd00947 TBP_aldolase_IIB Tagat 90.1 7.9 0.00017 36.5 13.1 107 208-318 148-274 (276)
405 PRK04169 geranylgeranylglycery 90.1 0.64 1.4E-05 42.7 5.6 42 187-228 171-214 (232)
406 TIGR02319 CPEP_Pphonmut carbox 90.1 1.3 2.9E-05 42.1 7.9 83 199-283 15-112 (294)
407 PF04309 G3P_antiterm: Glycero 89.9 0.57 1.2E-05 41.1 4.9 41 188-228 129-170 (175)
408 PRK08662 nicotinate phosphorib 89.8 2.9 6.3E-05 40.7 10.2 93 189-288 188-293 (343)
409 TIGR03569 NeuB_NnaB N-acetylne 89.7 9 0.0002 37.1 13.4 78 186-274 73-153 (329)
410 PRK07259 dihydroorotate dehydr 89.7 4.5 9.9E-05 38.3 11.4 90 191-282 83-188 (301)
411 cd00947 TBP_aldolase_IIB Tagat 89.6 4.8 0.0001 38.0 11.2 46 183-228 180-227 (276)
412 cd06556 ICL_KPHMT Members of t 89.4 2.3 4.9E-05 39.3 8.8 84 199-283 11-109 (240)
413 PRK10415 tRNA-dihydrouridine s 89.3 4.4 9.6E-05 39.0 11.1 42 186-227 181-224 (321)
414 PRK07998 gatY putative fructos 89.3 4.5 9.8E-05 38.3 10.8 45 184-228 184-230 (283)
415 TIGR03128 RuMP_HxlA 3-hexulose 89.3 5.7 0.00012 35.2 11.1 89 187-284 39-134 (206)
416 PF01116 F_bP_aldolase: Fructo 89.2 3.6 7.7E-05 39.1 10.1 45 183-227 188-235 (287)
417 PRK09195 gatY tagatose-bisphos 89.2 12 0.00026 35.5 13.6 107 208-319 155-281 (284)
418 PLN02495 oxidoreductase, actin 89.1 4.5 9.7E-05 40.0 11.0 99 189-287 102-218 (385)
419 PRK09427 bifunctional indole-3 88.8 14 0.00031 37.3 14.7 85 188-283 197-284 (454)
420 PF01884 PcrB: PcrB family; I 88.8 0.66 1.4E-05 42.5 4.7 39 190-228 173-212 (230)
421 PRK11572 copper homeostasis pr 88.6 6.6 0.00014 36.4 11.0 94 184-283 99-198 (248)
422 PRK11572 copper homeostasis pr 88.6 3.1 6.7E-05 38.6 8.9 70 208-284 9-94 (248)
423 TIGR00167 cbbA ketose-bisphosp 88.5 5.2 0.00011 38.0 10.7 43 186-228 193-237 (288)
424 PRK11840 bifunctional sulfur c 88.5 5.3 0.00012 38.4 10.7 113 91-227 153-278 (326)
425 PRK01222 N-(5'-phosphoribosyl) 88.5 8.2 0.00018 34.8 11.6 93 183-286 84-186 (210)
426 COG1954 GlpP Glycerol-3-phosph 88.5 2.3 5E-05 37.1 7.4 87 190-288 87-178 (181)
427 TIGR02708 L_lactate_ox L-lacta 88.3 5.8 0.00013 39.0 11.1 91 191-284 123-257 (367)
428 TIGR00640 acid_CoA_mut_C methy 88.2 6.7 0.00015 32.7 10.1 84 190-281 21-110 (132)
429 PRK10550 tRNA-dihydrouridine s 88.1 7 0.00015 37.5 11.4 42 186-227 181-224 (312)
430 PRK13396 3-deoxy-7-phosphohept 88.1 4.7 0.0001 39.4 10.2 129 187-318 197-343 (352)
431 cd03319 L-Ala-DL-Glu_epimerase 88.0 24 0.00052 33.5 15.1 89 187-285 164-260 (316)
432 PRK08883 ribulose-phosphate 3- 87.9 3 6.5E-05 37.9 8.4 115 93-228 73-196 (220)
433 TIGR01362 KDO8P_synth 3-deoxy- 87.6 5.7 0.00012 36.9 10.0 93 187-284 105-222 (258)
434 cd08205 RuBisCO_IV_RLP Ribulos 87.6 8 0.00017 38.0 11.7 112 177-288 107-235 (367)
435 cd03316 MR_like Mandelate race 87.6 9.4 0.0002 36.9 12.2 87 187-283 175-270 (357)
436 PRK05835 fructose-bisphosphate 87.6 7.4 0.00016 37.3 11.1 46 183-228 188-256 (307)
437 PRK00278 trpC indole-3-glycero 87.4 6.2 0.00014 36.8 10.4 72 210-287 73-144 (260)
438 cd03315 MLE_like Muconate lact 87.4 19 0.0004 33.3 13.7 86 188-283 116-210 (265)
439 cd04737 LOX_like_FMN L-Lactate 87.2 6.1 0.00013 38.6 10.5 90 191-283 115-249 (351)
440 TIGR02319 CPEP_Pphonmut carbox 87.2 6 0.00013 37.7 10.2 67 213-290 171-240 (294)
441 COG0191 Fba Fructose/tagatose 87.2 12 0.00026 35.3 12.0 160 69-228 40-235 (286)
442 COG0434 SgcQ Predicted TIM-bar 87.1 2.2 4.7E-05 39.2 6.8 65 216-288 173-237 (263)
443 PF00218 IGPS: Indole-3-glycer 87.1 8 0.00017 36.1 10.8 71 211-287 72-142 (254)
444 PRK08318 dihydropyrimidine deh 87.0 3.9 8.5E-05 40.8 9.4 43 186-228 237-283 (420)
445 COG0042 tRNA-dihydrouridine sy 87.0 5.8 0.00013 38.3 10.3 43 185-227 183-228 (323)
446 cd06557 KPHMT-like Ketopantoat 87.0 4.1 8.9E-05 38.0 8.9 92 191-283 4-111 (254)
447 cd00953 KDG_aldolase KDG (2-ke 86.9 7 0.00015 36.7 10.6 90 213-307 26-120 (279)
448 PF01116 F_bP_aldolase: Fructo 86.8 15 0.00034 34.8 12.8 110 208-319 155-284 (287)
449 TIGR01858 tag_bisphos_ald clas 86.6 20 0.00043 34.0 13.3 107 208-319 153-279 (282)
450 TIGR00693 thiE thiamine-phosph 86.4 4 8.6E-05 35.9 8.2 79 190-286 48-126 (196)
451 TIGR03586 PseI pseudaminic aci 86.2 34 0.00073 33.1 19.7 208 73-317 2-258 (327)
452 PRK02227 hypothetical protein; 85.9 8.2 0.00018 35.6 10.0 74 208-284 8-88 (238)
453 TIGR00259 thylakoid_BtpA membr 85.8 2.8 6.1E-05 39.1 7.1 73 210-283 31-109 (257)
454 PRK12737 gatY tagatose-bisphos 85.6 25 0.00054 33.3 13.5 107 208-319 155-281 (284)
455 PRK00311 panB 3-methyl-2-oxobu 85.5 9.1 0.0002 35.9 10.3 92 188-282 4-113 (264)
456 COG0269 SgbH 3-hexulose-6-phos 85.4 18 0.00039 32.8 11.7 91 188-286 44-140 (217)
457 COG2185 Sbm Methylmalonyl-CoA 85.3 6.4 0.00014 33.4 8.3 86 189-282 30-121 (143)
458 cd04722 TIM_phosphate_binding 85.2 8.2 0.00018 32.9 9.5 94 189-286 47-146 (200)
459 PRK05198 2-dehydro-3-deoxyphos 85.1 8 0.00017 36.1 9.6 93 187-284 113-230 (264)
460 TIGR01501 MthylAspMutase methy 85.0 20 0.00043 30.1 11.2 86 190-282 20-116 (134)
461 TIGR00737 nifR3_yhdG putative 84.8 9.2 0.0002 36.6 10.5 41 186-226 179-221 (319)
462 cd00377 ICL_PEPM Members of th 84.8 4.3 9.3E-05 37.5 7.8 82 199-282 8-103 (243)
463 COG4981 Enoyl reductase domain 84.8 24 0.00052 36.3 13.4 36 253-288 212-258 (717)
464 cd02940 DHPD_FMN Dihydropyrimi 84.7 10 0.00022 36.0 10.6 43 186-228 237-282 (299)
465 TIGR02321 Pphn_pyruv_hyd phosp 84.7 5.2 0.00011 38.0 8.5 83 199-283 14-110 (290)
466 PRK07188 nicotinate phosphorib 84.5 9.1 0.0002 37.4 10.2 97 189-288 191-315 (352)
467 cd02811 IDI-2_FMN Isopentenyl- 84.5 13 0.00027 35.9 11.2 95 188-284 100-210 (326)
468 TIGR01521 FruBisAldo_II_B fruc 84.4 25 0.00053 34.3 13.0 112 208-320 171-325 (347)
469 COG2513 PrpB PEP phosphonomuta 84.2 5.5 0.00012 37.6 8.2 91 191-284 10-114 (289)
470 COG2089 SpsE Sialic acid synth 84.1 42 0.00091 32.4 14.5 61 208-278 111-175 (347)
471 PRK09196 fructose-1,6-bisphosp 83.8 22 0.00048 34.7 12.5 112 208-320 173-327 (347)
472 PRK12857 fructose-1,6-bisphosp 83.8 34 0.00075 32.4 13.6 107 208-319 155-281 (284)
473 cd00429 RPE Ribulose-5-phospha 83.7 13 0.00029 32.6 10.4 89 187-284 45-135 (211)
474 COG1954 GlpP Glycerol-3-phosph 83.6 2.2 4.8E-05 37.1 4.9 43 187-229 132-175 (181)
475 PRK07084 fructose-bisphosphate 83.4 13 0.00029 35.8 10.6 94 91-228 129-269 (321)
476 PF00923 Transaldolase: Transa 83.3 5.4 0.00012 37.7 8.0 98 190-292 123-234 (287)
477 PRK13399 fructose-1,6-bisphosp 83.2 28 0.00061 34.0 12.9 112 208-320 173-327 (347)
478 PRK13305 sgbH 3-keto-L-gulonat 83.1 0.48 1E-05 43.1 0.7 96 208-311 117-213 (218)
479 TIGR03217 4OH_2_O_val_ald 4-hy 82.7 12 0.00027 36.1 10.4 74 212-285 29-109 (333)
480 KOG2550 IMP dehydrogenase/GMP 82.7 5.4 0.00012 39.5 7.7 231 41-283 30-320 (503)
481 PF04476 DUF556: Protein of un 82.5 14 0.00031 33.9 9.9 96 189-284 40-152 (235)
482 TIGR02320 PEP_mutase phosphoen 82.5 14 0.00031 35.0 10.4 71 211-289 173-246 (285)
483 PRK02615 thiamine-phosphate py 82.4 6.4 0.00014 38.4 8.3 78 190-285 192-269 (347)
484 cd02911 arch_FMN Archeal FMN-b 82.3 15 0.00033 33.6 10.3 40 186-227 180-220 (233)
485 TIGR00742 yjbN tRNA dihydrouri 82.2 14 0.00031 35.5 10.5 41 186-227 181-223 (318)
486 cd00564 TMP_TenI Thiamine mono 82.1 3.7 8E-05 35.5 6.0 43 185-227 136-178 (196)
487 PLN03033 2-dehydro-3-deoxyphos 81.6 13 0.00029 35.1 9.6 92 188-284 120-241 (290)
488 PF01680 SOR_SNZ: SOR/SNZ fami 81.5 30 0.00064 30.6 11.0 84 194-283 9-100 (208)
489 KOG3111 D-ribulose-5-phosphate 81.1 4.8 0.0001 35.8 6.2 39 189-227 158-197 (224)
490 TIGR03151 enACPred_II putative 81.1 17 0.00038 34.7 10.6 80 189-282 52-135 (307)
491 smart00052 EAL Putative diguan 80.9 13 0.00027 33.1 9.3 89 189-281 137-229 (241)
492 PRK13307 bifunctional formalde 80.9 19 0.00042 35.7 11.1 88 188-284 214-307 (391)
493 cd04730 NPD_like 2-Nitropropan 80.8 3 6.4E-05 37.8 5.1 42 187-228 144-186 (236)
494 COG1411 Uncharacterized protei 80.8 3 6.5E-05 37.3 4.8 49 239-289 168-216 (229)
495 COG1646 Predicted phosphate-bi 80.8 2.5 5.5E-05 38.6 4.4 40 187-228 181-221 (240)
496 TIGR02321 Pphn_pyruv_hyd phosp 80.6 22 0.00048 33.7 11.0 69 213-289 172-241 (290)
497 cd02931 ER_like_FMN Enoate red 80.5 20 0.00043 35.4 11.1 89 184-284 138-273 (382)
498 PF03437 BtpA: BtpA family; I 80.2 11 0.00023 35.2 8.5 71 210-283 32-110 (254)
499 PF00563 EAL: EAL domain; Int 80.1 5.8 0.00013 35.2 6.7 88 189-281 138-229 (236)
500 cd04735 OYE_like_4_FMN Old yel 79.8 20 0.00043 34.9 10.8 92 184-286 132-258 (353)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=1.2e-81 Score=572.48 Aligned_cols=330 Identities=76% Similarity=1.161 Sum_probs=313.8
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.|+++||+.+|+|+.|||+|+.|+++|.++|.+|+|+||+|+|++.+|+||++||+++++||+|+|++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
+.||++|.+.||||+++|++| +++|++.++++++|++++||+++++|+|+|.+
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999 57999999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
|+|+.|++|.|.+|..+..+|++.....+.......+.+.+++.+.+++++|++|+|+++.+++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888887665444433345577788888999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+++|+||||||||+|..+.++++|+|+.+++.+++||+.|||||+|.||+|||||||.+|++|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
||.++|+.|++|++..|.+.||+|+.+++++.+....
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~ 357 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEE 357 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeech
Confidence 9999999999999999999999999999998755443
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=9.8e-75 Score=555.70 Aligned_cols=331 Identities=92% Similarity=1.354 Sum_probs=300.4
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
++.||++|.++||||+++|++| +++|++.++++++||+++||+++++|+|+|..
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 9999999999999999999999 46799999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 216 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~ 216 (344)
|+|++|++++|.+|......++..............+...++....++.++|++|+|||+.|++||++|+|.++++++++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999888665554432211000000011123345555667889999999999999999999999999999999
Q ss_pred HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 217 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 217 ~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
.++|+|+|+|||||||++|++++++++|+++++.+.+++|||+|||||+|.|++|||+|||++|++|||++|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999888778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
|+.++++.+++||+..|.++|++++.+|++..+....
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~ 358 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW 358 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH
Confidence 9999999999999999999999999999988775543
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=3.9e-72 Score=538.39 Aligned_cols=333 Identities=66% Similarity=1.037 Sum_probs=300.0
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccc
Q 019244 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (344)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~ 81 (344)
.+++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|+|+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcc
Q 019244 82 QKMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 135 (344)
Q Consensus 82 ~~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~ 135 (344)
+++.||++|.++||||+++|++| +++|++.++++++||+++||+++++|+|+|.
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999 4589999999999999999999999999999
Q ss_pred ccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 136 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 136 ~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
.|+|++|++++|.+|. ..++..............+...++....++.++|++|+|+++.+++||++|+++++++++.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998773 2222211000000001122334555556788999999999999999999999999999999
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcCh
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~ 295 (344)
+.++|+|+|+|+||||++++++++++++|+++++.+..++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccCCCC
Q 019244 296 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 337 (344)
Q Consensus 296 ~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~ 337 (344)
+|+.+.++.+.+||+..|.++|+++++||++..+....++.|
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999999988765555443
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-72 Score=539.19 Aligned_cols=327 Identities=38% Similarity=0.671 Sum_probs=294.2
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
.++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 83 KMAHPEGEYATARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
++.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|.+
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 9999999999999999999999 46899999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCccccccccc-cc----------------cccccc-----ccchhhHHHHhhcCCCCCcHHHHHHH
Q 019244 137 GRREADIKNRFTLPPFLTLKNFQG-LD----------------LGKMDE-----ANDSGLAAYVAGQIDRSLSWKDVKWL 194 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g~~~~~~~~-~~----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~i 194 (344)
|+|++|++++|.+|.. +..++-. +. ...... ........+.....+++++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999987742 3222110 00 000000 00111223444556788999999999
Q ss_pred HHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 195 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 195 ~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
++.|++||++|+|++.++|+.+.++|+|+|+|+|||||+++..++++++|+++++.+..++|||+|||||+|.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 275 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 275 lGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
|||++|++||||+|+++..|++||.++++.|++||+..|.++|+++++||++..+.
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~ 376 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhc
Confidence 99999999999999999999999999999999999999999999999999988764
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=2.8e-71 Score=532.40 Aligned_cols=325 Identities=38% Similarity=0.603 Sum_probs=293.0
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccc
Q 019244 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (344)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~ 81 (344)
.+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+||||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCc
Q 019244 82 QKMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTP 134 (344)
Q Consensus 82 ~~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~ 134 (344)
+++.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 99999999999999999999999 458999999999999999999999999999
Q ss_pred cccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 135 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 135 ~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
.+|+|++|+|++|.+|......+ ..+... ..... ..+....++.++|++|+|+++.+++||++|++.++++++
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~~-----~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPTG-----AGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcccC-----Cccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999988774322111 000000 00000 111122356789999999999999999999999999999
Q ss_pred HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++.++|+|+|+||||||||++.++++++.|+++++.+++++|||+|||||++.|++|+|++||++|++|||++|+++..|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999998886689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 295 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
++|+.++++.|++||+..|.++|+++++||++..+...+
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999999999999999999988875443
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.8e-70 Score=530.05 Aligned_cols=324 Identities=41% Similarity=0.667 Sum_probs=288.9
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeeccccccc
Q 019244 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (344)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~ 83 (344)
++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|||+++++||+|||||+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccc
Q 019244 84 MAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 136 (344)
Q Consensus 84 ~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~ 136 (344)
+.||++|.++|+||+++|++| +++|++.++++++||+++||+++++|+|+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999 45799999999999999999999999999999
Q ss_pred cccHHHHHhhcCCCCc--ccccccc-c------ccccccccc-----cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcE
Q 019244 137 GRREADIKNRFTLPPF--LTLKNFQ-G------LDLGKMDEA-----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 202 (344)
Q Consensus 137 g~r~~~~~~~~~~~~g--~~~~~~~-~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~Pv 202 (344)
|+|++|+|++| .|.. ....++- . +........ .............++.++|+.|+||++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999997 3421 1111100 0 000000000 001122233334578899999999999999999
Q ss_pred EEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 203 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 203 ivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
++|++.+.++|+.+.++|+|+|+|+|||||++|++++++++|+++++.+.+++||+++||||+|.|++|||+|||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred chHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 283 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 283 g~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
||||+|+++..|++||+++++.+++||+..|.++|+++++||+++.
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 9999999999999999999999999999999999999999998764
No 7
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.3e-70 Score=526.74 Aligned_cols=317 Identities=43% Similarity=0.705 Sum_probs=286.7
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++++.||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcc---------------------c----cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHH
Q 019244 88 EGEYATARAASAAGTIM---------------------V----YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 142 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~---------------------~----~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~ 142 (344)
++|.++||||+++|++| | ..+++.++++++||+++||+++++|+|+|+.|+|++|
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d 160 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERD 160 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhh
Confidence 99999999999999999 1 2368999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccccccc----------------ccccc---cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEE
Q 019244 143 IKNRFTLPPFLTLKNFQGLDLG----------------KMDEA---NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPIL 203 (344)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~Pvi 203 (344)
.+++|.+|.+..+.++...... ..... .......++..+.+++++|++|+||++.++.|++
T Consensus 161 ~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pvi 240 (361)
T cd04736 161 LRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240 (361)
T ss_pred hhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEE
Confidence 9999988876665553211000 00000 0011233454567889999999999999999999
Q ss_pred EEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 204 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 204 vK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+|+++++++++++.++|+|+|+||||||+|++..++++++|+++++.+ ++|||+|||||+|.||+|||+|||++|++|
T Consensus 241 iKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLLG 318 (361)
T ss_pred EecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999999999999999999999999999999999877 599999999999999999999999999999
Q ss_pred hHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 284 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 284 ~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
||++|+++..|++||+++++.|++||+..|.++|+++++||++
T Consensus 319 r~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 319 RATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 9999999999999999999999999999999999999999863
No 8
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=3.9e-70 Score=526.98 Aligned_cols=316 Identities=51% Similarity=0.792 Sum_probs=278.3
Q ss_pred HHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCChhhHHH
Q 019244 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (344)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~l 93 (344)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++++.|+++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc--------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhc
Q 019244 94 ARAASAAGTIM--------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 147 (344)
Q Consensus 94 A~aA~~~g~~~--------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~ 147 (344)
|++|+++|+++ +++|++...++++|++++||+++++|+|+|..++|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999 3679999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccccc------------c-cccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHH
Q 019244 148 TLPPFLTLKNFQGLDLGKM------------D-EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 214 (344)
Q Consensus 148 ~~~~g~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~ 214 (344)
.+|..++..++........ . .......+++...+.+++++|+.|+|+++.|++|||+|+|++++|++
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9888876666532211100 0 01122345666677788899999999999999999999999999999
Q ss_pred HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 215 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 215 ~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++.++|+|+|+|||||||++||+++++++|+++++++++++|||+|||||+|.|++|+|+|||++|++||||+|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 295 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
++|+.++++.|++||+..|.++|+++++||+++.+
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~ 355 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLL 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhc
Confidence 99999999999999999999999999999998876
No 9
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.3e-69 Score=520.27 Aligned_cols=321 Identities=42% Similarity=0.691 Sum_probs=290.0
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccc
Q 019244 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (344)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~ 82 (344)
+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcc---------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcc
Q 019244 83 KMAHPEGEYATARAASAAGTIM---------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 135 (344)
Q Consensus 83 ~~~~~~~~~~lA~aA~~~g~~~---------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~ 135 (344)
++.||++|.++|++|+++|+++ +++|++..+++++|++++||+++++|+|+|.
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 9999999999999999999999 2469999999999999999999999999999
Q ss_pred ccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 136 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 136 ~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
.|+|++|++++|.+|.+....+...... . ...+. .......++.++|++++|+++.+++||++|++.++++++.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~---~--~~~~~-~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT---G--KGKGI-SEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc---c--cCcch-hhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998885543322110000 0 00000 1112234567899999999999999999999999999999
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcCh
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 295 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~ 295 (344)
+.++|+|+|+|+||||++++.++++++.|+++++.+++++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988876899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 296 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 296 ~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
+|+.++++.+++||+.+|.++|+++++||++.+|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987654
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.2e-66 Score=499.94 Aligned_cols=312 Identities=47% Similarity=0.760 Sum_probs=283.2
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|+||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcc----------------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 88 EGEYATARAASAAGTIM----------------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~----------------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++|.++|+||+++|++| +++|++.++++++|++++||+++++|+|.|..|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 99999999999999999 35788999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc
Q 019244 140 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 219 (344)
Q Consensus 140 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~ 219 (344)
++|++++|..|......+..... ...+...++....++..+|+.|+|+++.+++||++|++.++++++.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKA-------KGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCcccccccccccc-------ccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 99999999877654433311100 01112223333456678999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 220 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 220 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
|+|+|+|+||||+++|..++++.+|+++++.+ .+++|||++||||+|.|++|+|+|||++|++||+|++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999998889999999998743 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+|.++++.+++||+.+|.++|+++++||++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999999999975
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=4.2e-61 Score=457.80 Aligned_cols=292 Identities=90% Similarity=1.324 Sum_probs=260.2
Q ss_pred ccceeecccCCCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc--------------------
Q 019244 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------------------- 104 (344)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------------------- 104 (344)
-|+|+||+|++++++||+|+|||+++++||+|||||++++.||++|.++||||+++|++|
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 489999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHH
Q 019244 105 ------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 178 (344)
Q Consensus 105 ------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (344)
+++|++.++++++||+++||+++++|+|+|..|+|++|++++|.+|......++..............+...++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 46799999999999999999999999999999999999999998887655555422110000000111233455
Q ss_pred hhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 179 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 179 ~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
....++.++|++|+|||+.|++||++|++.+.++|+++.++|+|+|+||||||+++|++++++++|+++++.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 55667889999999999999999999999999999999999999999999999999999999999999998887789999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeeccCCC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 336 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~ 336 (344)
+|||||+|.|++|||+|||++|++|||++|+++..|++|+.++++.+++||+..|.++|++++++|++..+......+
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~ 360 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTP 360 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775544333
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.4e-61 Score=459.76 Aligned_cols=326 Identities=44% Similarity=0.624 Sum_probs=295.5
Q ss_pred hHHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccC
Q 019244 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (344)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~ 86 (344)
+.|+++.|+.++| +.|+|+.+|+++|.|+++|+++|++|.|+|++|++++++||+|+|||+++++||+|+||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCcc----------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHH
Q 019244 87 PEGEYATARAASAAGTIM----------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 144 (344)
Q Consensus 87 ~~~~~~lA~aA~~~g~~~----------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~ 144 (344)
++++..-|++|+.+|.++ +..+++...+++++++++|++.+++|+|.|..++|++|.+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~ 159 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV 159 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcchhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHH
Confidence 999999999999999888 2368888889999999999999999999999999999999
Q ss_pred hhcCCCCccccccccccccc----ccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcC
Q 019244 145 NRFTLPPFLTLKNFQGLDLG----KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG 220 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G 220 (344)
+.+..|......|+.+.... .........+.++.....++..+|+++.+|++.|..|+++|++.+++|+..+.+.|
T Consensus 160 ~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg 239 (360)
T COG1304 160 NGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTG 239 (360)
T ss_pred hccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCC
Confidence 99887766555555331110 00001111345666666788899999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHH
Q 019244 221 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 300 (344)
Q Consensus 221 ~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~ 300 (344)
+++|.++||||+++|||++++++|++++++++++++|++|||||+|.|++|||+|||++|++|||++|+++..|++||.+
T Consensus 240 ~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~ 319 (360)
T COG1304 240 ADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVER 319 (360)
T ss_pred ceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHhhhcccceeecc
Q 019244 301 VLEMLREEFELAMALSGCRSLKEITRDHIVTEW 333 (344)
Q Consensus 301 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 333 (344)
+++.+++||+.+|.++|+++|+||++..++...
T Consensus 320 ~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 320 VLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence 999999999999999999999999999887654
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=9.6e-53 Score=399.10 Aligned_cols=273 Identities=59% Similarity=0.913 Sum_probs=236.8
Q ss_pred HHHHHHHHHhCCccchhhhcCccccchHHHHhHhcccccceeecccCCCCCCCcceeecccccccceeecccccccccCC
Q 019244 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (344)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~ 87 (344)
+||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|||+++++||+|+||++++..++
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998887789
Q ss_pred hhhHHHHHHHHHcCCccccC--------------------------CHHHHHHHHHHHHHcCCcEEEeccCCccccccHH
Q 019244 88 EGEYATARAASAAGTIMVYK--------------------------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 141 (344)
Q Consensus 88 ~~~~~lA~aA~~~g~~~~~~--------------------------d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~ 141 (344)
+++..+|++|+++|++++.. +++...+.++++++.|++++.+++++|..
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~----- 155 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL----- 155 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----
Confidence 99999999999999999321 11111222222222222222222222110
Q ss_pred HHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCC
Q 019244 142 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 221 (344)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~ 221 (344)
+.. ..|+.++++++.+++||++|++.++++++.+.++|+
T Consensus 156 ----------------------------------------~~~-~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 156 ----------------------------------------GRR-LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred ----------------------------------------CCC-CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 111 478899999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHH
Q 019244 222 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 301 (344)
Q Consensus 222 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~ 301 (344)
|+|+++||||++.++++++++.++++++.+.+++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988755799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 302 LEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 302 l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999963
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=1.1e-40 Score=319.68 Aligned_cols=274 Identities=25% Similarity=0.369 Sum_probs=218.3
Q ss_pred HhHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCC
Q 019244 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKD 108 (344)
Q Consensus 38 ~n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d 108 (344)
.+.+.||+|+|+|++|+ ++++|||+|+|+|+++++||+++||+|+.....+++.+||++|+++|++| .+.+
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35678999999999998 78999999999999999999999999876444567899999999999988 3456
Q ss_pred HHHHHHHHHHHHHcCC-cEEEeccCCcccc-ccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 109 RNVVAQLVRRAERAGF-KAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 109 ~~~~~~~i~~a~~ag~-~~l~~tvd~~~~g-~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
++.. +-++..++... ..+..++..+.+. +...+.+. .++.+.++.++. +.+..|+..+++++.+|
T Consensus 97 ~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~-----------~i~~~~adalel-~l~~~q~~~~~~~~~df 163 (326)
T cd02811 97 PELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR-----------AVEMIEADALAI-HLNPLQEAVQPEGDRDF 163 (326)
T ss_pred hhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH-----------HHHhcCCCcEEE-eCcchHhhcCCCCCcCH
Confidence 6655 33344444333 4456666665542 11111111 111122233332 34567788888877776
Q ss_pred -cH-HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCC--------------------CCCchhhH
Q 019244 187 -SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ--------------------LDYVPATI 241 (344)
Q Consensus 187 -~~-~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~--------------------~~~g~~~~ 241 (344)
.| +.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+. .+|+.++.
T Consensus 164 ~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~ 243 (326)
T cd02811 164 RGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTA 243 (326)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHH
Confidence 34 6799999999999999998 78999999999999999999998841 24577888
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
..|+++++.+. ++|||++|||+++.|++|+|++|||+|++||+||+++.. |.+++.++++.+.+||+.+|.++|++|+
T Consensus 244 ~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si 321 (326)
T cd02811 244 ASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNL 321 (326)
T ss_pred HHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999988764 799999999999999999999999999999999998766 9999999999999999999999999999
Q ss_pred hhhcc
Q 019244 322 KEITR 326 (344)
Q Consensus 322 ~~l~~ 326 (344)
+||++
T Consensus 322 ~el~~ 326 (326)
T cd02811 322 AELKQ 326 (326)
T ss_pred HHhcC
Confidence 99963
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=1.5e-40 Score=321.37 Aligned_cols=281 Identities=25% Similarity=0.365 Sum_probs=226.8
Q ss_pred hHhcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCCH
Q 019244 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKDR 109 (344)
Q Consensus 39 n~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d~ 109 (344)
..+.||+|+|+|++|+ ++++|||+|+|||+++++||+|+||+|+.....+.|.+||++|+++|++| .++++
T Consensus 26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~ 105 (352)
T PRK05437 26 KTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDP 105 (352)
T ss_pred CCCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccCh
Confidence 3457999999999998 78899999999999999999999999876444567899999999999999 35677
Q ss_pred HHHHHHHHHHHHcC-CcEEEeccCCccc-cccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 110 NVVAQLVRRAERAG-FKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 110 ~~~~~~i~~a~~ag-~~~l~~tvd~~~~-g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
+ ..+-++..++.. -..+..++..+.. ++...+... .++.+.++.++. +.+..|+.++++++.+|.
T Consensus 106 ~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~-----------~~~~~~adal~l-~l~~~qe~~~p~g~~~f~ 172 (352)
T PRK05437 106 E-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQR-----------AVEMIEADALQI-HLNPLQELVQPEGDRDFR 172 (352)
T ss_pred h-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHH-----------HHHhcCCCcEEE-eCccchhhcCCCCcccHH
Confidence 7 444445545433 3446666666554 222222211 112222333332 345678888888887763
Q ss_pred -H-HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCC---------C---------CCCchhhHHHH
Q 019244 188 -W-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q---------LDYVPATIMAL 244 (344)
Q Consensus 188 -~-~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~---------~---------~~~g~~~~~~l 244 (344)
| +.++++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+ . .+|+.|+.++|
T Consensus 173 ~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHH
Confidence 3 6799999999999999998 7899999999999999999999883 2 25788999999
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
.++++.. .++|||++|||+++.|++|+|++|||+|++||+|++++...|.+++.++++.+.+||+.+|.++|+++++||
T Consensus 253 ~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL 331 (352)
T PRK05437 253 LEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAEL 331 (352)
T ss_pred HHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 9998874 379999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cccceeecc
Q 019244 325 TRDHIVTEW 333 (344)
Q Consensus 325 ~~~~l~~~~ 333 (344)
++.+++..+
T Consensus 332 ~~~~~~~~~ 340 (352)
T PRK05437 332 RKVPLVLSG 340 (352)
T ss_pred CCCCEEecH
Confidence 999877654
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=6e-40 Score=315.38 Aligned_cols=277 Identities=25% Similarity=0.388 Sum_probs=219.0
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------ccCCHHH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------VYKDRNV 111 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~~~d~~~ 111 (344)
+.||+|+|+|.+|+ ++++|||||+|||+++++||+|+||+|+.......+..||++|+++|+++ .+++++.
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 46999999999998 67899999999999999999999998876443456889999999999999 3557776
Q ss_pred HHHHHHHHHH-cCCcEEEeccCCcccccc-HHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-cH
Q 019244 112 VAQLVRRAER-AGFKAIALTVDTPRLGRR-EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW 188 (344)
Q Consensus 112 ~~~~i~~a~~-ag~~~l~~tvd~~~~g~r-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 188 (344)
.+++ +..++ ..-..+..++.++..... ..+.+ ..++.+.++.++. +.+..|+.++++++++| .|
T Consensus 101 ~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~-----------~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~ 167 (333)
T TIGR02151 101 ADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQ-----------EAIDMIEADALAI-HLNVLQELVQPEGDRNFKGW 167 (333)
T ss_pred HhHH-HHHHHhCCCCcEEeecCchhhccccHHHHH-----------HHHHHhcCCCEEE-cCcccccccCCCCCcCHHHH
Confidence 6555 33443 222334455554443211 11111 1112222333332 34556788888888777 34
Q ss_pred -HHHHHHHHhcCCcEEEEee---cCHHHHHHHHHcCCcEEEEccCCCCC------------------CCCchhhHHHHHH
Q 019244 189 -KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVPATIMALEE 246 (344)
Q Consensus 189 -~~i~~i~~~~~~PvivK~v---~~~~~a~~~~~~G~d~I~v~~~gG~~------------------~~~g~~~~~~l~~ 246 (344)
+.++++++.+++||++|++ .+.+.++.+.++|+|+|+|+|+||+. .+|+.++.+.|.+
T Consensus 168 le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~ 247 (333)
T TIGR02151 168 LEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLE 247 (333)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHH
Confidence 6799999999999999998 78999999999999999999998853 3467888888888
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+++ ...++|||++|||+++.|++|+|++|||+|++||+|+..+...|++++.++++.+.+||+.+|.++|+++++||++
T Consensus 248 ~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~ 326 (333)
T TIGR02151 248 VRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKK 326 (333)
T ss_pred HHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHcc
Confidence 876 2237999999999999999999999999999999999987768999999999999999999999999999999998
Q ss_pred cceee
Q 019244 327 DHIVT 331 (344)
Q Consensus 327 ~~l~~ 331 (344)
.+++.
T Consensus 327 ~~~~~ 331 (333)
T TIGR02151 327 VPLVI 331 (333)
T ss_pred CCeEe
Confidence 87754
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=100.00 E-value=2.4e-31 Score=251.72 Aligned_cols=260 Identities=19% Similarity=0.249 Sum_probs=192.7
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC-CHHHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK-DRNVVAQLVR 117 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~-d~~~~~~~i~ 117 (344)
.||+++|+|..++ ++++|||+|+|+++++++||+|++|. . .+|..||++|+++|... +++ +++...++++
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t-~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvr 76 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----T-IIDEKLAEQLAENGYFYIMHRFDEESRIPFIK 76 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc-----h-hhhHHHHHHHHHcCCEEEEecCCHHHHHHHHH
Confidence 5999999999997 46799999999999999999999994 2 58999999999999888 677 8888777877
Q ss_pred HHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 118 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 118 ~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
..+..+. ...+.+.+ .+.+...-- ..++. +..+.+... ..+++....++.|+++++
T Consensus 77 k~k~~~L-~v~~SvG~-----t~e~~~r~~--------~lv~a~~~~d~i~~D---------~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 77 DMQERGL-FASISVGV-----KACEYEFVT--------QLAEEALTPEYITID---------IAHGHSNSVINMIKHIKT 133 (321)
T ss_pred hcccccc-EEEEEcCC-----CHHHHHHHH--------HHHhcCCCCCEEEEe---------CccCchHHHHHHHHHHHH
Confidence 7655443 22222222 222211100 00000 000111110 012344456788999999
Q ss_pred hcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCC--------CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 197 ITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 197 ~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~--------~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++.|.++|+ +.+.++|+.+.++|+|+|+|++++|+.. ..+.+.++++.+++++. ++|||+|||||++.
T Consensus 134 ~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~ 211 (321)
T TIGR01306 134 HLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHG 211 (321)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHH
Confidence 9988855555 8999999999999999999998777631 22334678899998876 79999999999999
Q ss_pred HHHHHHHcCCCEEEEchHH--------------------HHHhhh----------cCh-------HHHHHHHHHHHHHHH
Q 019244 268 DVFKALALGASGIFIGRPV--------------------VYSLAA----------EGE-------KGVRRVLEMLREEFE 310 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~--------------------l~~~~~----------~G~-------~~v~~~l~~l~~el~ 310 (344)
|++|||++|||+||+|++| ++++.. +|. -.+.+++.++...|+
T Consensus 212 Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr 291 (321)
T TIGR01306 212 DIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQ 291 (321)
T ss_pred HHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHH
Confidence 9999999999999999988 222211 111 028899999999999
Q ss_pred HHHHHhCCCCHhhhcccceeec
Q 019244 311 LAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 311 ~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
..|.++|+++++||++..++..
T Consensus 292 ~~~~~~G~~~l~~~~~~~~~~~ 313 (321)
T TIGR01306 292 SSISYAGGKDLDSLRTVDYVIV 313 (321)
T ss_pred HHHHhcCCCcHHHHhhCCEEEE
Confidence 9999999999999998766543
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.98 E-value=4.7e-31 Score=250.66 Aligned_cols=260 Identities=18% Similarity=0.238 Sum_probs=191.8
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC-CHHHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK-DRNVVAQLVR 117 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~-d~~~~~~~i~ 117 (344)
.||+++|+|..|+ ++++||++|+|+|+++++||||++|. . .+|..||++|+++|... +++ +++...++++
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t-~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r 79 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----T-IIDEKIAEWLAENGYFYIMHRFDPEARIPFIK 79 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc-----c-hhHHHHHHHHHHcCCEEEEecCCHHHHHHHHH
Confidence 4999999999997 56799999999999999999999994 2 58999999999999877 677 8888888886
Q ss_pred HHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 118 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 118 ~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
..+..+. ...+.+.+. ..+....- ..++. ...+.++.... .++.....+.|++|++
T Consensus 80 ~~~~~~l-~v~~~vg~~-----~~~~~~~~--------~Lv~ag~~~d~i~iD~a---------~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 80 DMHEQGL-IASISVGVK-----DDEYDFVD--------QLAAEGLTPEYITIDIA---------HGHSDSVINMIQHIKK 136 (326)
T ss_pred hcccccc-EEEEEecCC-----HHHHHHHH--------HHHhcCCCCCEEEEECC---------CCchHHHHHHHHHHHh
Confidence 5544443 222222211 11111000 00000 00011111111 1223334567999999
Q ss_pred hcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------CCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 197 ITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 197 ~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
.++ +||++|.+.|.++++.+.++|+|+|.|+++||++. ..+.+ .++++.++++.+ ++|||++|||+++.
T Consensus 137 ~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~ 214 (326)
T PRK05458 137 HLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHG 214 (326)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHH
Confidence 995 88998899999999999999999999999999652 12345 455688888776 69999999999999
Q ss_pred HHHHHHHcCCCEEEEchHHH--------------------HHh---hh-------cChH-------HHHHHHHHHHHHHH
Q 019244 268 DVFKALALGASGIFIGRPVV--------------------YSL---AA-------EGEK-------GVRRVLEMLREEFE 310 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l--------------------~~~---~~-------~G~~-------~v~~~l~~l~~el~ 310 (344)
|++|+|++||++||+|++|. +++ .. +|.+ .+.+++..+..+|+
T Consensus 215 Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr 294 (326)
T PRK05458 215 DIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQ 294 (326)
T ss_pred HHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHH
Confidence 99999999999999999996 111 11 2333 48899999999999
Q ss_pred HHHHHhCCCCHhhhcccceeec
Q 019244 311 LAMALSGCRSLKEITRDHIVTE 332 (344)
Q Consensus 311 ~~m~~~G~~~i~~l~~~~l~~~ 332 (344)
..|.++|++++.||++..++..
T Consensus 295 ~~m~~~Ga~~i~el~~~~~v~~ 316 (326)
T PRK05458 295 SSISYAGGRDLDAIRKVDYVIV 316 (326)
T ss_pred HHHHHhCCCCHHHHhcCCEEEE
Confidence 9999999999999998765543
No 19
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.97 E-value=3.5e-29 Score=245.55 Aligned_cols=263 Identities=24% Similarity=0.207 Sum_probs=194.2
Q ss_pred CCCcceeecc-----cccccceeecccccccccCChhhHHHHHHHHHcCCccc----cCCHHHHHHHHHHHHHcCCcEEE
Q 019244 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMV----YKDRNVVAQLVRRAERAGFKAIA 128 (344)
Q Consensus 58 ~vd~st~l~g-----~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~----~~d~~~~~~~i~~a~~ag~~~l~ 128 (344)
.++.++++++ ..+..||++++|+++.++ ++...+||.||+++|+... ..+++.....++ .+
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s-~~a~~aLa~aa~~aG~~~~~Gegg~~~~~~~~~~~---------~i 128 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGALS-KEAKEALAIGAALAGTASNTGEGGELPEEREGGGD---------II 128 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCccc-HHHHHHHHHHHHhcCCceeecCCCCCHHHHhhhhh---------eE
Confidence 3455666654 356889999999988864 4578899999999999882 345555442221 22
Q ss_pred eccCCccccccHHHHHh--hc--CCCCccccccccccccccc----cc-ccchhhHHHHhhcCCCCCc-----HHHHHHH
Q 019244 129 LTVDTPRLGRREADIKN--RF--TLPPFLTLKNFQGLDLGKM----DE-ANDSGLAAYVAGQIDRSLS-----WKDVKWL 194 (344)
Q Consensus 129 ~tvd~~~~g~r~~~~~~--~~--~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~-----~~~i~~i 194 (344)
..+....+|.+...... .+ .+.+|..+...+.++...+ +. .+.+..++.+++.+++++. .+.|+++
T Consensus 129 ~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~l 208 (392)
T cd02808 129 KQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDL 208 (392)
T ss_pred EEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Confidence 33334456665544321 11 1223332222222322211 11 2455677888888888874 4579999
Q ss_pred HHhcC-CcEEEEeec--CHHHHHHHHHcC-CcEEEEccCCCCC--------CCCchhhHHHHHHHHHHc-----cCCCcE
Q 019244 195 QTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPV 257 (344)
Q Consensus 195 ~~~~~-~PvivK~v~--~~~~a~~~~~~G-~d~I~v~~~gG~~--------~~~g~~~~~~l~~i~~~~-----~~~~~v 257 (344)
|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++|.+ .++|.|+..+|.++++.+ +.++||
T Consensus 209 r~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~v 288 (392)
T cd02808 209 REATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSL 288 (392)
T ss_pred HHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeE
Confidence 99998 999999986 467766666666 9999999996542 457899999999998765 347999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 308 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~e 308 (344)
|++|||+++.|++|+|+||||+|++||+++++++|. |.++|.++++.+.+|
T Consensus 289 iasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~e 368 (392)
T cd02808 289 IASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEE 368 (392)
T ss_pred EEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654 788999999999999
Q ss_pred HHHHHHHhCCCCHhhhccccee
Q 019244 309 FELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 309 l~~~m~~~G~~~i~~l~~~~l~ 330 (344)
|+.+|..+|++++++|++.++.
T Consensus 369 l~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 369 LRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred HHHHHHHhCCCChHHCCHHHhh
Confidence 9999999999999999988774
No 20
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.96 E-value=1.4e-27 Score=224.39 Aligned_cols=258 Identities=20% Similarity=0.249 Sum_probs=188.0
Q ss_pred cccccceeecc--cCCCCCCCcceeeccc-----ccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHH
Q 019244 42 AFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNV 111 (344)
Q Consensus 42 ~f~~i~l~pr~--l~~~~~vd~st~l~g~-----~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~ 111 (344)
.||++.|+|+. +.+.++|||+++|..+ .+..||+-|+|.. -++..+|.+-++.|... +++ +.+.
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt------v~~~~mA~~la~~g~~~~iHk~~~~e~ 82 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT------VGTFEMAAALSQHSIFTAIHKHYSVDE 82 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc------ccCHHHHHHHHHCCCeEEEeeCCCHHH
Confidence 69999999984 3466899999999744 7899999999952 25678999999999887 444 5666
Q ss_pred HHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHH
Q 019244 112 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKD 190 (344)
Q Consensus 112 ~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (344)
..++++.....-...+.+.+ |.++.+....- ..++. ...+.+.... ..++.....+.
T Consensus 83 ~~~~v~~~~~~~~~~~~vsv-----G~~~~d~er~~--------~L~~a~~~~d~iviD~---------AhGhs~~~i~~ 140 (343)
T TIGR01305 83 WKAFATNSSPDCLQNVAVSS-----GSSDNDLEKMT--------SILEAVPQLKFICLDV---------ANGYSEHFVEF 140 (343)
T ss_pred HHHHHHhhcccccceEEEEe-----ccCHHHHHHHH--------HHHhcCCCCCEEEEEC---------CCCcHHHHHHH
Confidence 66677665443223333332 22332221100 00000 0001111111 12344456788
Q ss_pred HHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc-----cCCCCCCCCc-hhhHHHHHHHHHHccC-CCcEEEecC
Q 019244 191 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGG 262 (344)
Q Consensus 191 i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~-----~~gG~~~~~g-~~~~~~l~~i~~~~~~-~~~via~GG 262 (344)
|+|||+.|+.+.++|+ +.|+++++.++++|||+|.|+ ++++|+.++. .|+++++++++++.+. ++|||+|||
T Consensus 141 ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 141 VKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred HHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 9999999977777777 899999999999999999998 6777887764 4999999999998866 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh-----------------cChH-------HH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-----------------EGEK-------GV 298 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-----------------~G~~-------~v 298 (344)
||++.||+|||++|||+||+|+.| ++++++ +|.+ .+
T Consensus 221 Ir~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v 300 (343)
T TIGR01305 221 CTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDV 300 (343)
T ss_pred cCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcH
Confidence 999999999999999999999876 122221 1110 28
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 299 RRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 299 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+++.++...|+..|.++|+.+++||+++
T Consensus 301 ~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 301 ENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 89999999999999999999999999654
No 21
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.93 E-value=7.1e-25 Score=212.38 Aligned_cols=275 Identities=20% Similarity=0.270 Sum_probs=176.9
Q ss_pred hcccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--------CCH
Q 019244 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--------KDR 109 (344)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--------~d~ 109 (344)
..||++.|+|. ++ +.++|||++.+.+..+..||+++||++ . .+..+|.+.+++|... +. .++
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~g--V----t~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDA--V----VSPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcc--c----CCHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 36999999999 65 457899999998999999999999964 2 3446999999999853 22 244
Q ss_pred HHHHHHHHHH---------HHcCCcEEEeccCCccccccHHHHHhhcCCCC--ccccccccc----c---cccccccccc
Q 019244 110 NVVAQLVRRA---------ERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQG----L---DLGKMDEAND 171 (344)
Q Consensus 110 ~~~~~~i~~a---------~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~--g~~~~~~~~----~---~~~~~~~~~~ 171 (344)
+.....+... ++.+.+ ..+......+-+.++.. ..+. +....+... + ..+.+..+..
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~----P~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAE----PIKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcC----CCCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEecc
Confidence 4433333221 111111 00100011111112211 0000 000000000 0 0000000000
Q ss_pred hhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHH
Q 019244 172 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALE 245 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~ 245 (344)
..-+++ .+..-.|+.+.++++..++||+++.+.|.++++.+.++|||+|.++..+|+ ...++.|++.++.
T Consensus 164 t~~~~h----~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~ 239 (368)
T PRK08649 164 VVSAEH----VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIA 239 (368)
T ss_pred chhhhc----cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHH
Confidence 000010 111125777777777789999998899999999999999999999754442 1334678888888
Q ss_pred HHHHHcc--------CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH-----------hhh------cCh-----
Q 019244 246 EVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----------LAA------EGE----- 295 (344)
Q Consensus 246 ~i~~~~~--------~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~-----------~~~------~G~----- 295 (344)
++++..+ .++|||++|||+++.|++|||++|||+||+|++|... +++ +|.
T Consensus 240 ~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~ 319 (368)
T PRK08649 240 DVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVG 319 (368)
T ss_pred HHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCC
Confidence 8865421 1599999999999999999999999999999998542 221 111
Q ss_pred --HHHHHHHH----------HHHHHHHHHHHHhCCCCHhhhcccceee
Q 019244 296 --KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 331 (344)
Q Consensus 296 --~~v~~~l~----------~l~~el~~~m~~~G~~~i~~l~~~~l~~ 331 (344)
-.+++++. ++...|++.|.++|+++|+||++..++.
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 320 TTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13778877 9999999999999999999999887764
No 22
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.92 E-value=5.5e-24 Score=200.11 Aligned_cols=258 Identities=20% Similarity=0.197 Sum_probs=186.0
Q ss_pred cccccceeeccc--CCCCCCCcceeec-----ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHH
Q 019244 42 AFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNV 111 (344)
Q Consensus 42 ~f~~i~l~pr~l--~~~~~vd~st~l~-----g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~ 111 (344)
.|+++.|+|+.- .+.++|||+.+|. .+.+..||+-|+|.. -++..+|.+-++.|... +++ +.+.
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT------V~~~~mA~~la~~g~~~~iHk~~~~e~ 83 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT------VGTFEMAKALASFDILTAVHKHYSVEE 83 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCc------cccHHHHHHHHHCCCeEEEecCCCHHH
Confidence 699999999853 4557999988885 345669999999952 25678999999999887 555 5666
Q ss_pred HHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccccc-ccccccccccchhhHHHHhhcCCCCCcHHH
Q 019244 112 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LDLGKMDEANDSGLAAYVAGQIDRSLSWKD 190 (344)
Q Consensus 112 ~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (344)
..++++..+......+.+.+. .++.+....- ..++. ...+.+.... ..++.....+.
T Consensus 84 ~~~fv~~~~~~~~~~~~vavG-----~~~~d~er~~--------~L~~~~~g~D~iviD~---------AhGhs~~~i~~ 141 (346)
T PRK05096 84 WAAFVNNSSADVLKHVMVSTG-----TSDADFEKTK--------QILALSPALNFICIDV---------ANGYSEHFVQF 141 (346)
T ss_pred HHHHHHhccccccceEEEEec-----CCHHHHHHHH--------HHHhcCCCCCEEEEEC---------CCCcHHHHHHH
Confidence 667777766443343444332 2332221100 00000 0011111111 12344446678
Q ss_pred HHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEEEecC
Q 019244 191 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGG 262 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~via~GG 262 (344)
|++||+.+ +++||...+.|++.++.++++|||+|.|.-..|+- .-.|.|++.++.+++++.+. .+|||+|||
T Consensus 142 ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG 221 (346)
T PRK05096 142 VAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG 221 (346)
T ss_pred HHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC
Confidence 99999998 69999999999999999999999999998665642 23478999999999887643 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhhc-----------------ChH-------HH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV--------------------VYSLAAE-----------------GEK-------GV 298 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~~-----------------G~~-------~v 298 (344)
|++..|++|||++|||+||+|+.| ++++++. |.+ .+
T Consensus 222 i~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v 301 (346)
T PRK05096 222 CTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPV 301 (346)
T ss_pred cccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcH
Confidence 999999999999999999999988 2333221 110 28
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 299 RRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 299 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
.+++.++...|+..|.++|+++|.||++.
T Consensus 302 ~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 302 ENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 89999999999999999999999999654
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.91 E-value=2.5e-23 Score=199.51 Aligned_cols=257 Identities=24% Similarity=0.342 Sum_probs=177.5
Q ss_pred cccccceeeccc-CCCCCCCcceeecc-cccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--CCHHHHHHHH
Q 019244 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--KDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~d~~~~~~~i 116 (344)
.||++.|+|... .+.++||++|.|.+ ..++.||+.+||.+. .+..+|.+.+++|... ++ .+.+...+.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~~~~~~~~~~i 76 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRNMSIEEQAEEV 76 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCCCCHHHHHHHH
Confidence 599999999864 35788999999988 889999999999753 2446888888988754 22 2444455566
Q ss_pred HHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHH
Q 019244 117 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 196 (344)
Q Consensus 117 ~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 196 (344)
++++. . +.+.... +.++.+.... ...++. ..+.+... ...++++..++.++++++
T Consensus 77 ~~vk~--~--l~v~~~~---~~~~~~~~~~--------~~l~ea-gv~~I~vd---------~~~G~~~~~~~~i~~ik~ 131 (325)
T cd00381 77 RKVKG--R--LLVGAAV---GTREDDKERA--------EALVEA-GVDVIVID---------SAHGHSVYVIEMIKFIKK 131 (325)
T ss_pred HHhcc--C--ceEEEec---CCChhHHHHH--------HHHHhc-CCCEEEEE---------CCCCCcHHHHHHHHHHHH
Confidence 66642 1 1111111 1111110000 000000 00000000 011223334567999999
Q ss_pred hcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHHHHHHHccC-CCcEEEecCCCCHHH
Q 019244 197 ITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTD 268 (344)
Q Consensus 197 ~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~g~d 268 (344)
..+ +||++..+.+.++++.+.++|+|+|+|+..+|. ...++.|++.++.++.+.+.. ++|||++|||+++.|
T Consensus 132 ~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~d 211 (325)
T cd00381 132 KYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGD 211 (325)
T ss_pred HCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Confidence 874 899998889999999999999999999643332 134678899999988877643 699999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHH--------------------hhh----------------------cCh-------HHHH
Q 019244 269 VFKALALGASGIFIGRPVVYS--------------------LAA----------------------EGE-------KGVR 299 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~--------------------~~~----------------------~G~-------~~v~ 299 (344)
++|+|++||++||+|+.|.-. ++. +|. -.+.
T Consensus 212 i~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~ 291 (325)
T cd00381 212 IVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVK 291 (325)
T ss_pred HHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEecCCcHH
Confidence 999999999999999998431 110 010 1388
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 019244 300 RVLEMLREEFELAMALSGCRSLKEITRDHI 329 (344)
Q Consensus 300 ~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 329 (344)
+.+.++...|+..|.++|+.+|+||++...
T Consensus 292 ~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 292 DVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 999999999999999999999999987754
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.91 E-value=1.1e-23 Score=201.52 Aligned_cols=258 Identities=22% Similarity=0.326 Sum_probs=169.8
Q ss_pred cccccceeecc---cCCCCCCCcceee-cccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHH
Q 019244 42 AFSRILFRPRI---LIDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQ 114 (344)
Q Consensus 42 ~f~~i~l~pr~---l~~~~~vd~st~l-~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~ 114 (344)
.||++.|+|.. +++..++||++.+ -+.+++.||+-|||.. -.+..+|.+-++.|... +++ ..+...+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDt------Vte~~mAiama~~Gglgvih~~~~~e~q~~ 77 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDT------VTESEMAIAMARLGGLGVIHRNMSIEEQAE 77 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTT------TSSHHHHHHHHHTTSEEEEESSSCHHHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccc------cchHHHHHHHHHhcCCceecCCCCHHHHHH
Confidence 59999999987 3556667777656 5789999999999953 14557999989998766 333 3444445
Q ss_pred HHHHHHHc---------CCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 115 LVRRAERA---------GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 115 ~i~~a~~a---------g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+++.++. +--.+...+.+.. ...+... .+.....+.+... ...++..
T Consensus 78 ~v~~vK~~~~~a~~d~~~~l~V~aavg~~~---~~~er~~-----------~L~~agvD~ivID---------~a~g~s~ 134 (352)
T PF00478_consen 78 EVKKVKRYYPNASKDEKGRLLVAAAVGTRD---DDFERAE-----------ALVEAGVDVIVID---------SAHGHSE 134 (352)
T ss_dssp HHHHHHTHHTTHHBHTTSCBCEEEEEESST---CHHHHHH-----------HHHHTT-SEEEEE----------SSTTSH
T ss_pred HHhhhccccccccccccccceEEEEecCCH---HHHHHHH-----------HHHHcCCCEEEcc---------ccCccHH
Confidence 56666542 0000000010000 0000000 0000000001000 0123333
Q ss_pred CcHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcE
Q 019244 186 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 257 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~v 257 (344)
...+.+++|++.++ +||++..+.|.+.++.++++|||+|.|.-.+|.. .-.|.|++.++.+++++..+ .+||
T Consensus 135 ~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 135 HVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCce
Confidence 35568999999995 9999999999999999999999999998766642 23478999999999887643 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh------------------------c
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA------------------------E 293 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~------------------------~ 293 (344)
|+||||+++.|++|||++|||+||+|+.| ++++++ +
T Consensus 215 IADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~e 294 (352)
T PF00478_consen 215 IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPE 294 (352)
T ss_dssp EEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSS
T ss_pred eecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccccccccc
Confidence 99999999999999999999999999987 122211 1
Q ss_pred ChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 294 GEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 294 G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
|.+ .+.+++..|...|+..|.++|+++|.||++..
T Consensus 295 Gve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 295 GVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp BEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 111 38899999999999999999999999998774
No 25
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.91 E-value=5.5e-24 Score=204.84 Aligned_cols=243 Identities=25% Similarity=0.266 Sum_probs=150.5
Q ss_pred cccccceeecccccccccCChhhHHHHHHHHHcCCcccc----CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHH
Q 019244 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143 (344)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~----~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~ 143 (344)
.+++.||+|++|+++.++ +++..+||+++++.|+.+.. .+++... .+.+..++.+....+|.+...+
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~--------~~~~~~I~Q~~sg~fGv~~~~l 132 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGGELPEERK--------AAKDLRIKQIASGRFGVRPEYL 132 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT---GGGCS--------B-TTSSEEEE-TT-TT--HHHH
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCCCCHHHhc--------ccCCceEEEcCCCCCCCCHHHh
Confidence 467899999999999877 56889999999999998821 2222111 0111124566677778876655
Q ss_pred Hhh--cC--CCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cH----HHHHHHHHhc-CCcEEEEeec
Q 019244 144 KNR--FT--LPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL 208 (344)
Q Consensus 144 ~~~--~~--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~----~~i~~i~~~~-~~PvivK~v~ 208 (344)
+.. ++ +.+|..+...+.++...+.. +...+....++|..++++ +. +.|++||+.. ++||.+|.+.
T Consensus 133 ~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~ 212 (368)
T PF01645_consen 133 KQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVA 212 (368)
T ss_dssp CC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred cCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECC
Confidence 532 22 34444444444444433321 122334456666666665 33 3589999998 7999999984
Q ss_pred --CHHHH-HHHHHcCCcEEEEccC-CCCC-------CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHH
Q 019244 209 --TAEDA-RIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 209 --~~~~a-~~~~~~G~d~I~v~~~-gG~~-------~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~ka 272 (344)
..++. ..+.++|+|+|+++++ ||+. .++|.|+...|.++.+.+ ++++.|+++||++++.|++|+
T Consensus 213 ~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~ka 292 (368)
T PF01645_consen 213 GRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKA 292 (368)
T ss_dssp STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHH
T ss_pred CCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHH
Confidence 23444 3489999999999986 4543 247899999999888775 468999999999999999999
Q ss_pred HHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 273 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 273 lalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++||||+|.+||++|+++.|. +.+.|.+++..+.+||+..|..+|.+
T Consensus 293 laLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 293 LALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp HHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998762 35679999999999999999999974
No 26
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.90 E-value=3e-22 Score=193.71 Aligned_cols=276 Identities=21% Similarity=0.264 Sum_probs=174.8
Q ss_pred hcccccceeecc-cCCCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc-------c--cCCHH
Q 019244 41 NAFSRILFRPRI-LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-------V--YKDRN 110 (344)
Q Consensus 41 ~~f~~i~l~pr~-l~~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------~--~~d~~ 110 (344)
..||+|.|+|.. -++.++|||+..+.+.++..||+.+||.+ . .+..++..+.++|.+. + +.+++
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMag--V----td~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDA--L----VSPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCc--c----cCHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 479999999974 46778999999998899999999999975 2 2457999999999833 1 12222
Q ss_pred HHH-------------HHHHHHHHcCCcEEEeccCCccccccHHHHHhhc-CCCCcccccccccc-------cccccccc
Q 019244 111 VVA-------------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF-TLPPFLTLKNFQGL-------DLGKMDEA 169 (344)
Q Consensus 111 ~~~-------------~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~-~~~~g~~~~~~~~~-------~~~~~~~~ 169 (344)
... +..+..++.+++. ++......+-..++... .....++..+...+ ..+.+..+
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~----~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ih 162 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAP----LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQ 162 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCc----cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEe
Confidence 111 1111122222222 11111112222222210 00000000000000 00000000
Q ss_pred cchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHHHH
Q 019244 170 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALE 245 (344)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~ 245 (344)
....-|++. .+.-.|..+.++++.+++||+++.+.+.++++.+.++|+|+|.++.+|+.. +..+.|+.+++.
T Consensus 163 grt~~q~~~----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~ 238 (369)
T TIGR01304 163 GTLVSAEHV----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIA 238 (369)
T ss_pred ccchhhhcc----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHH
Confidence 000001111 112358888888888999999988999999999999999999855444422 234678888888
Q ss_pred HHHHHc-------c-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC-----------------------
Q 019244 246 EVVKAT-------Q-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG----------------------- 294 (344)
Q Consensus 246 ~i~~~~-------~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G----------------------- 294 (344)
+++++. + ..+|||++|||+++.|++|+|++|||+|++|++|+.+..+.|
T Consensus 239 d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~ 318 (369)
T TIGR01304 239 DVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESG 318 (369)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCcccccccc
Confidence 776542 1 149999999999999999999999999999999976433211
Q ss_pred hHH----HHHHH----------HHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 295 EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 295 ~~~----v~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
..| +++++ .+|...|++.|..+|+.+++++++..++
T Consensus 319 ~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 319 TVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred ccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55554 3788999999999999999999988764
No 27
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.90 E-value=2.8e-22 Score=195.20 Aligned_cols=281 Identities=19% Similarity=0.236 Sum_probs=182.0
Q ss_pred hcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc---ccCCHHHHHHH
Q 019244 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM---VYKDRNVVAQL 115 (344)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~---~~~d~~~~~~~ 115 (344)
-.||++.|+|..-. ..++||++|.|. ...+..||+-|||.+. .+..||.+.+++|... ...+++...+.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~~~~~e~l~~e 83 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHKNMSIEAQRKE 83 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecCCCCHHHHHHH
Confidence 35999999998542 457899999986 4678999999999642 2446999999999765 23467777778
Q ss_pred HHHHHHcC-CcEEEeccCCccc---------ccc----HHHHHhhcCCCCcccccc----cc---ccccccccc--ccch
Q 019244 116 VRRAERAG-FKAIALTVDTPRL---------GRR----EADIKNRFTLPPFLTLKN----FQ---GLDLGKMDE--ANDS 172 (344)
Q Consensus 116 i~~a~~ag-~~~l~~tvd~~~~---------g~r----~~~~~~~~~~~~g~~~~~----~~---~~~~~~~~~--~~~~ 172 (344)
++++++.- .+.+..+.|.-.. +.. ..|+...-.+|......+ +. ....+.+.. ....
T Consensus 84 I~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~ 163 (404)
T PRK06843 84 IEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVK 163 (404)
T ss_pred HHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHh
Confidence 88877642 1222222211000 000 001110000111000000 00 000000000 0000
Q ss_pred hhHHH-H--hhcCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----CCC-CCchhhHH
Q 019244 173 GLAAY-V--AGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQL-DYVPATIM 242 (344)
Q Consensus 173 ~~~~~-~--~~~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~~~-~~g~~~~~ 242 (344)
...+. + ...+++...++.++++++.+ +++|+++.+.|.++++.+.++|+|+|.++...| +.. .+|.|+++
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lt 243 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQIT 243 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHH
Confidence 00000 1 11233334567899999998 699999999999999999999999999864433 233 34678888
Q ss_pred HHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh---------
Q 019244 243 ALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 292 (344)
Q Consensus 243 ~l~~i~~~~~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~--------- 292 (344)
++.++.+.+. .++|||++|||+++.|++|||++||++||+|++|. ++|++
T Consensus 244 ai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~ 323 (404)
T PRK06843 244 AICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSK 323 (404)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhcccc
Confidence 8877776653 26999999999999999999999999999999882 22211
Q ss_pred ----------------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 ----------------EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 ----------------~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|...|+..|.++|+.+|.||+..
T Consensus 324 ~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 324 SRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred ccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 0110 1889999999999999999999999999854
No 28
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.87 E-value=5.4e-21 Score=187.85 Aligned_cols=252 Identities=21% Similarity=0.200 Sum_probs=186.0
Q ss_pred cccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHH
Q 019244 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 143 (344)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~ 143 (344)
..+..||.+++|+++.++ +++..+||+++.+.|..+ -..+++..+ ..+.++..+-+-.||.+...+
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGGe~~~~~~---------~~~s~I~QvaSGRFGV~~~yL 232 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGGEDPERYE---------DGRSAIKQVASGRFGVTPEYL 232 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCCCCHHHhc---------cccceEEEeccccCccCHHHh
Confidence 567889999999999988 568999999999999887 344555442 112244555666677666544
Q ss_pred Hhh--cC--CCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC-cHHH----HHHHHHhc-CCcEEEEeec
Q 019244 144 KNR--FT--LPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL-SWKD----VKWLQTIT-KLPILVKGVL 208 (344)
Q Consensus 144 ~~~--~~--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~----i~~i~~~~-~~PvivK~v~ 208 (344)
.+. ++ +.+|..+...+.++...+.. +...+....++|.++.++ +.++ |..|++.. ..+|.||.+.
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva 312 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVA 312 (485)
T ss_pred CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 432 22 34454454455555443321 122233456777777665 5553 66777765 3679999984
Q ss_pred --CHHHHHH-HHHcCCcEEEEccC-CCCC-------CCCchhhHHHHHHHHHHc-----cCCCcEEEecCCCCHHHHHHH
Q 019244 209 --TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 209 --~~~~a~~-~~~~G~d~I~v~~~-gG~~-------~~~g~~~~~~l~~i~~~~-----~~~~~via~GGIr~g~dv~ka 272 (344)
..+.+.. ..+++||.|+|+|+ ||+. ..+|.|....|.++.+.+ ++++.|+++||++|+.||+|+
T Consensus 313 ~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka 392 (485)
T COG0069 313 EHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKA 392 (485)
T ss_pred ccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHH
Confidence 3455544 88999999999997 5553 246888888888887764 568999999999999999999
Q ss_pred HHcCCCEEEEchHHHHHhhhc-----------------------------ChHHHHHHHHHHHHHHHHHHHHhCCCCHhh
Q 019244 273 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKE 323 (344)
Q Consensus 273 lalGAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el~~~m~~~G~~~i~~ 323 (344)
++||||.|.+|++.|.++.|. .++.|.+++..+.+|++++|..+|.+++++
T Consensus 393 ~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~e 472 (485)
T COG0069 393 AALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSE 472 (485)
T ss_pred HHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999988752 357899999999999999999999999999
Q ss_pred hcccce
Q 019244 324 ITRDHI 329 (344)
Q Consensus 324 l~~~~l 329 (344)
|.++..
T Consensus 473 l~g~~d 478 (485)
T COG0069 473 LIGRTD 478 (485)
T ss_pred Hhcchh
Confidence 986643
No 29
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.86 E-value=1.6e-20 Score=189.14 Aligned_cols=145 Identities=23% Similarity=0.360 Sum_probs=121.1
Q ss_pred CCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC------CCCCchhhHHHHHHHHHHcc-C
Q 019244 182 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 253 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~------~~~~g~~~~~~l~~i~~~~~-~ 253 (344)
++..+.|+.|++|++.+ ++||+++.+.|.++++.+.++|+|+|.|+.++|. ..++|.|++.++.++++... .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34445678999999998 6999999999999999999999999999754442 24678899999888887654 3
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------c--------------
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------E-------------- 293 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------~-------------- 293 (344)
++|||++|||+++.|++||+++||++||+|+.|. ++|+. .
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~ 423 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIK 423 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccc
Confidence 6999999999999999999999999999999883 22211 0
Q ss_pred ---Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 294 ---GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 294 ---G~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
|. ..+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 424 ~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 424 VAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred cCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 11 1288999999999999999999999999987
No 30
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.86 E-value=3.4e-20 Score=187.06 Aligned_cols=141 Identities=27% Similarity=0.404 Sum_probs=118.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----CC-CCCchhhHHHHHHHHHHcc-CCCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQ-LDYVPATIMALEEVVKATQ-GRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~~-~~~g~~~~~~l~~i~~~~~-~~~~vi 258 (344)
.++.++++++.+ ++||+++.+.|.++++.+.++|+|+|.++..+| +. ..+|.|+++++.++++..+ .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 456799999998 899999999999999999999999999965433 33 3578999999999988663 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh------------------------cC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EG 294 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~------------------------~G 294 (344)
++|||+++.|++|||++||++||+|+.|- ++|++ +|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999872 22221 11
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 295 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 295 ~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
. -.+.+++.++...|+..|.++|+.++.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 1 12889999999999999999999999999844
No 31
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.85 E-value=6e-20 Score=183.67 Aligned_cols=142 Identities=26% Similarity=0.334 Sum_probs=120.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcEE
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~vi 258 (344)
..+.+++|++.+ ++||++..+.|.+.++.+.++|+|+|.|+..+|+. ..+|.|+..++.++++.... .+|||
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi 332 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW 332 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE
Confidence 456799999987 79999988999999999999999999999888863 35688999998888765432 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHH---------------------HHHhhh-----------------------cC
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPV---------------------VYSLAA-----------------------EG 294 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~---------------------l~~~~~-----------------------~G 294 (344)
++|||+++.|++|||++||++||+|+.| +++|++ +|
T Consensus 333 adGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eG 412 (475)
T TIGR01303 333 ADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEG 412 (475)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCc
Confidence 9999999999999999999999999987 112211 23
Q ss_pred hHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 295 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 295 ~~~-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
.+| +.+++.++..+|+..|.++|+++|.||+.+-
T Consensus 413 v~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 413 ISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred eecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 332 7889999999999999999999999998663
No 32
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.85 E-value=9.2e-20 Score=182.21 Aligned_cols=142 Identities=29% Similarity=0.411 Sum_probs=118.9
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----C-CCCchhhHHHHHHHHHHcc-CCC
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~-~~~g~~~~~~l~~i~~~~~-~~~ 255 (344)
....++.|+++++.+ ++||+++.+.|.++++.+.++|+|+|.|+.++|. . ..+|.|+++++.++++... .++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 344567899999996 7999999999999999999999999999865552 1 3478899999999887653 379
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh-----------------------
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA----------------------- 292 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~----------------------- 292 (344)
|||++|||+++.|++|||++||++||+|+.|. ++|++
T Consensus 329 pviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~ 408 (450)
T TIGR01302 329 PVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFV 408 (450)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999882 22211
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
+|.+ .+.+++.++...|+..|.++|+.++.||+
T Consensus 409 ~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 409 PEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred CCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 1111 38899999999999999999999999986
No 33
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.84 E-value=8.3e-20 Score=184.04 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=115.0
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCC--chh---hHHHHHHHHHHccC
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--VPA---TIMALEEVVKATQG 253 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~--g~~---~~~~l~~i~~~~~~ 253 (344)
....|+.|++||+.+ +.+|+++.+.|.++++.+.++|+|+|.|++|.|+ +... |.+ ++..++++++..
T Consensus 273 ~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-- 350 (505)
T PLN02274 273 SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-- 350 (505)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--
Confidence 334689999999999 5899999999999999999999999999987663 2211 333 445566665544
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH--------------------HHhhh---------------------
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------------------- 292 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l--------------------~~~~~--------------------- 292 (344)
++|||++|||+++.|++|||++||++|++|+.|. ++|++
T Consensus 351 ~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v 430 (505)
T PLN02274 351 GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKI 430 (505)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCccccc
Confidence 7999999999999999999999999999999883 22211
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.+|...|+..|.++|+.+|.||+..
T Consensus 431 ~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 431 AQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred CCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 1111 2889999999999999999999999999866
No 34
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.82 E-value=1e-19 Score=183.06 Aligned_cols=141 Identities=26% Similarity=0.332 Sum_probs=118.9
Q ss_pred cHHHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCC-----C-CCCCchhhHHHHHHHHHHc-------
Q 019244 187 SWKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------- 251 (344)
Q Consensus 187 ~~~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG-----~-~~~~g~~~~~~l~~i~~~~------- 251 (344)
..+.|+++++.++ ++|+...+.++++++.++++|||+|+|++||| | +.+.|+|+++++.+++++.
T Consensus 270 ~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~ 349 (502)
T PRK07107 270 QKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEET 349 (502)
T ss_pred HHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhc
Confidence 3578999999986 45555558999999999999999999999999 4 5678899999999998865
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh-------------------
Q 019244 252 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA------------------- 292 (344)
Q Consensus 252 ~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~------------------- 292 (344)
+.++|||+|||||++.|++|||++|||+||+|++| +++|++
T Consensus 350 g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~ 429 (502)
T PRK07107 350 GVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSF 429 (502)
T ss_pred CCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhcccccccccccccc
Confidence 22599999999999999999999999999999998 222221
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 -~G~~-------~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|.+ .+.+++.++...|+..|.++|+.++.||+..
T Consensus 430 ~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 430 EEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 1111 2889999999999999999999999999855
No 35
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.81 E-value=7.4e-19 Score=190.28 Aligned_cols=269 Identities=20% Similarity=0.146 Sum_probs=187.2
Q ss_pred cccccceeecccC--CCCCCCcceeecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHH
Q 019244 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQL 115 (344)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~ 115 (344)
.++++.+.+..+. +.+++..-.+ +-.+|.+++|+++.++ +++..+||+||.+.|+.+ -..+++...
T Consensus 832 ~lr~ll~~~~~~~~~p~~eve~v~~-----I~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~-- 903 (1485)
T PRK11750 832 TLRDLLALKPADNPIPLDEVEPAEE-----LFKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGGEDPARYG-- 903 (1485)
T ss_pred CHHHHhcccCCCCCCCccccccHHH-----HhcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCCCCHHHHh--
Confidence 4566666654332 2333322122 3446999999999887 468999999999999988 234555331
Q ss_pred HHHHHHcCCcEEEeccCCccccccHHHHHhh----cCCCCccccccccccccccccc-----ccchhhHHHHhhcCCCCC
Q 019244 116 VRRAERAGFKAIALTVDTPRLGRREADIKNR----FTLPPFLTLKNFQGLDLGKMDE-----ANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 116 i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 186 (344)
.++.+ .+..+-+..+|.+..-+.+. ..+.+|..+...+.++...+.. +...+...+++|.+++++
T Consensus 904 -----~~~~~-~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdi 977 (1485)
T PRK11750 904 -----TEKVS-KIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDI 977 (1485)
T ss_pred -----cccCC-eEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccC
Confidence 11222 35566667777775444432 2234555554445554443321 122334556777777776
Q ss_pred -cHHH----HHHHHHhc-CCcEEEEeecC--H-HHHHHHHHcCCcEEEEccCC-CCC-------CCCchhhHHHHHHHHH
Q 019244 187 -SWKD----VKWLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVK 249 (344)
Q Consensus 187 -~~~~----i~~i~~~~-~~PvivK~v~~--~-~~a~~~~~~G~d~I~v~~~g-G~~-------~~~g~~~~~~l~~i~~ 249 (344)
+.++ |.++|+.. +.||.||.+.+ . ..+.-+.++|+|+|+|+|+. |+. .+.|.|....|.++.+
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~ 1057 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQ 1057 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHH
Confidence 5553 67777776 57999999843 2 23345778999999999974 442 2357777777877776
Q ss_pred Hc-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhc----------------------------ChH
Q 019244 250 AT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEK 296 (344)
Q Consensus 250 ~~-----~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~----------------------------G~~ 296 (344)
.+ ++++.|+++||++|+.|++||++||||.|.+|+++|.+++|. ..+
T Consensus 1058 ~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~ 1137 (1485)
T PRK11750 1058 ALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPE 1137 (1485)
T ss_pred HHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHH
Confidence 54 568999999999999999999999999999999999998762 135
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 297 GVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 297 ~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
.|.+++..+.+|++.+|..+|.++++||
T Consensus 1138 ~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1138 MVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 7999999999999999999999999999
No 36
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.79 E-value=1.2e-17 Score=158.80 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=107.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC-CCCC--C-------------CCc----hh
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ--L-------------DYV----PA 239 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~-gG~~--~-------------~~g----~~ 239 (344)
+.+.++.++++++.+++||++|...+. +.++.+.++|+|+|+++|. .|.. . -.+ +.
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~ 221 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI 221 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccc
Confidence 345677899999998999999987554 3478899999999998763 1210 0 011 12
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
.+..+.++++.+ ++|||++|||++++|+.++++.|||+|++||++++. + .+++.++++++.+|...|++
T Consensus 222 ~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~-----P----~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 222 ALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD-----P----YAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred cHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----c----HHHHHHHHHHHHHHHHcCCC
Confidence 456777887766 799999999999999999999999999999999863 3 47788999999999999999
Q ss_pred CHhhhccc
Q 019244 320 SLKEITRD 327 (344)
Q Consensus 320 ~i~~l~~~ 327 (344)
+++|+.+.
T Consensus 291 ~i~~~~g~ 298 (301)
T PRK07259 291 SIEEIVGI 298 (301)
T ss_pred CHHHHhCc
Confidence 99999764
No 37
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.79 E-value=3e-17 Score=157.71 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCC-CCCCC---------Cc---h----hhHHHHHH
Q 019244 188 WKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHG-ARQLD---------YV---P----ATIMALEE 246 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~g-G~~~~---------~g---~----~~~~~l~~ 246 (344)
.+.++++++.+++||++|+... .+.++.+.++|+|+|+++|+. +...| ++ + -.+..+.+
T Consensus 152 ~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~ 231 (325)
T cd04739 152 LDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI 231 (325)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH
Confidence 4679999999999999998743 456888999999999999864 21111 11 1 12345555
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
+++.+ ++|||++|||+|+.|+.++|.+||++|++||++++ +|.. ++..+.+||..+|...|+++++|+++
T Consensus 232 v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G 301 (325)
T cd04739 232 LSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGPD----YIGTLLAGLEAWMEEHGYESVQQLRG 301 (325)
T ss_pred HHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 55544 79999999999999999999999999999999987 3553 78889999999999999999999987
Q ss_pred c
Q 019244 327 D 327 (344)
Q Consensus 327 ~ 327 (344)
.
T Consensus 302 ~ 302 (325)
T cd04739 302 S 302 (325)
T ss_pred c
Confidence 3
No 38
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.78 E-value=1.8e-17 Score=159.96 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=105.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCCC-CCC---------CCchh-------hHHHHH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGA-RQL---------DYVPA-------TIMALE 245 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~gG-~~~---------~~g~~-------~~~~l~ 245 (344)
.++.++++++.+++||++|+... .+.++.+.++|+|+|+++|+.. ... .+|.+ .+..+.
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~ 232 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA 232 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence 46779999999999999998643 3557889999999999988631 111 22222 234455
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
++++.+ ++|||++|||+|+.|+.|+|.+||++|++||++++ +|. .+++.+.+||+.+|...|+++++|++
T Consensus 233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~ 302 (334)
T PRK07565 233 ILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR 302 (334)
T ss_pred HHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 555544 79999999999999999999999999999999987 244 47889999999999999999999998
Q ss_pred ccc
Q 019244 326 RDH 328 (344)
Q Consensus 326 ~~~ 328 (344)
+..
T Consensus 303 g~~ 305 (334)
T PRK07565 303 GSM 305 (334)
T ss_pred ccc
Confidence 743
No 39
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.78 E-value=1.7e-17 Score=156.40 Aligned_cols=135 Identities=25% Similarity=0.403 Sum_probs=110.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCCC--CCC------------CC---ch----hhH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQL------------DY---VP----ATI 241 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~gG--~~~------------~~---g~----~~~ 241 (344)
.-+.++++++..++||++|+..+. +.|+.+.++|+|+|++.|+-. ... .+ |+ -.+
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 334588999999999999998654 347889999999999998422 100 11 22 245
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 321 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i 321 (344)
..+.++++.++.++|||+.|||.|++|+++.+.+||++|++++.+++ +|. .+++.+.++|..+|...|+.|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcCCCCH
Confidence 67888888877789999999999999999999999999999999987 366 3788999999999999999999
Q ss_pred hhhcccce
Q 019244 322 KEITRDHI 329 (344)
Q Consensus 322 ~~l~~~~l 329 (344)
+|+.+...
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987543
No 40
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.77 E-value=2.1e-17 Score=157.08 Aligned_cols=132 Identities=27% Similarity=0.353 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC-CCCCC------------C---Cchh----h
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL------------D---YVPA----T 240 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~-gG~~~------------~---~g~~----~ 240 (344)
++..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+.. . .|++ .
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 222 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIA 222 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHH
Confidence 44567899999988999999987543 4477899999999999864 22110 0 1221 2
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+..+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. + .++..++++|..+|...|+++
T Consensus 223 l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p-----~~~~~i~~~l~~~~~~~g~~~ 291 (300)
T TIGR01037 223 LRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G-----FAFKKIIEGLIAFLKAEGFTS 291 (300)
T ss_pred HHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c-----hHHHHHHHHHHHHHHHcCCCC
Confidence 45677777666 699999999999999999999999999999999862 2 478899999999999999999
Q ss_pred Hhhhccc
Q 019244 321 LKEITRD 327 (344)
Q Consensus 321 i~~l~~~ 327 (344)
++|+.+.
T Consensus 292 ~~e~~g~ 298 (300)
T TIGR01037 292 IEELIGI 298 (300)
T ss_pred HHHHhCc
Confidence 9999753
No 41
>PLN02826 dihydroorotate dehydrogenase
Probab=99.76 E-value=1.5e-16 Score=156.40 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=100.5
Q ss_pred cCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCC-CC----------CCCC---ch----hhHHHHHHHHHHccC
Q 019244 198 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VP----ATIMALEEVVKATQG 253 (344)
Q Consensus 198 ~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~g-G~----------~~~~---g~----~~~~~l~~i~~~~~~ 253 (344)
.++||++|+. .+.++ ++.+.++|+|+|+++|+- ++ +..+ |+ .++..+.++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995 45444 788999999999999841 11 1112 22 256778888888877
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 328 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 328 (344)
++|||++|||.|+.|+++.|.+||++|+++|.++| +|+ .+++.+.+||..+|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 355 37788999999999999999999997643
No 42
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.75 E-value=1.4e-16 Score=155.14 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCCC--CCC----------------CC---chh--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQL----------------DY---VPA-- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~gG--~~~----------------~~---g~~-- 239 (344)
..+.++++++.+++||++|+..+. +.++.+.++|+|+|++.|+-. ... .+ |++
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alk 249 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVR 249 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhh
Confidence 334578888888999999998543 447789999999999998522 111 01 111
Q ss_pred --hHHHHHHHHHHcc----CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 240 --TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 240 --~~~~l~~i~~~~~----~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
.+..+.++++.+. .++|||+.|||.|+.|+++.|.+||++|++++.+++ +|.. +++.+.+||+.+|
T Consensus 250 piAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m 321 (385)
T PLN02495 250 PIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFM 321 (385)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHH
Confidence 2233445555542 259999999999999999999999999999999886 3663 7888999999999
Q ss_pred HHhCCCCHhhhcccce
Q 019244 314 ALSGCRSLKEITRDHI 329 (344)
Q Consensus 314 ~~~G~~~i~~l~~~~l 329 (344)
...|+++++|+++..+
T Consensus 322 ~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 322 KKHNFSSIEDFRGASL 337 (385)
T ss_pred HHcCCCCHHHHhCcCC
Confidence 9999999999987543
No 43
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.75 E-value=1.1e-16 Score=160.41 Aligned_cols=142 Identities=28% Similarity=0.350 Sum_probs=118.0
Q ss_pred CcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC------CCCchhhHHHHHHHHHHccC-CCcE
Q 019244 186 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 257 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~------~~~g~~~~~~l~~i~~~~~~-~~~v 257 (344)
..++.|++|++.+ +++|+...+.|.+.++.+.++|+|+|.|.-..|+- ...|.|+++++.+++++... .+||
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 3567899999998 69999999999999999999999999987655531 23467999999999886543 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHH---------------------Hhhh-----------------------c
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------SLAA-----------------------E 293 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~---------------------~~~~-----------------------~ 293 (344)
|++|||+++.|++|+|++||++||+|+.|.- +|++ +
T Consensus 334 ia~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~e 413 (479)
T PRK07807 334 WADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEE 413 (479)
T ss_pred EecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCC
Confidence 9999999999999999999999999998721 1110 1
Q ss_pred ChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 294 GEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 294 G~~~-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
|.++ +..++..|...|+..|.++|+++|.||+.+
T Consensus 414 Gv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 414 GISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred CccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 2112 778899999999999999999999999866
No 44
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.1e-17 Score=158.99 Aligned_cols=147 Identities=26% Similarity=0.350 Sum_probs=119.5
Q ss_pred cCCCCCcHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----C--CCCchhhHHHHHHHHHHcc-
Q 019244 181 QIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ- 252 (344)
Q Consensus 181 ~~~~~~~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~--~~~g~~~~~~l~~i~~~~~- 252 (344)
+++..+..+.|+|+++.+ .++||...+.|.+.++.++++|||++.|....|. | +..|.|+..++.++.+...
T Consensus 273 qGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 273 QGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred CCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 455566788999999999 5889988899999999999999999999865553 2 3457787778777776543
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH--------------------HHHhhh--------------------
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA-------------------- 292 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~--------------------l~~~~~-------------------- 292 (344)
-.+|+|+||||++..+++|||.|||++||+|.-+ +++++.
T Consensus 353 ~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvk 432 (503)
T KOG2550|consen 353 FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVK 432 (503)
T ss_pred cCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEe
Confidence 3799999999999999999999999999999854 222211
Q ss_pred --cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 293 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 293 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|. -.+.+++..+...++..++..|++++++|+..
T Consensus 433 iAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 433 IAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred eccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 111 13889999999999999999999999999754
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.73 E-value=3.8e-16 Score=148.20 Aligned_cols=204 Identities=23% Similarity=0.285 Sum_probs=144.2
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCC
Q 019244 75 MIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 150 (344)
Q Consensus 75 ~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~ 150 (344)
+++.|+........--..+.+...+.+.+. ...+.+...+..++++++|++.+.++..+|....+..
T Consensus 63 ~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~--------- 133 (296)
T cd04740 63 MLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGM--------- 133 (296)
T ss_pred eeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcc---------
Confidence 345566544221111123333333356666 3456777778888999999999999988886411100
Q ss_pred CcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEE
Q 019244 151 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIV 226 (344)
Q Consensus 151 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v 226 (344)
.+ ..++.+..+.++++++.+++||++|...+. +.++.+.++|+|+|++
T Consensus 134 ---------~~-------------------~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 134 ---------AF-------------------GTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---------cc-------------------cCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 00 011233456799999988999999986432 4577899999999999
Q ss_pred ccC-CCCCCC---------------Cch----hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 227 SNH-GARQLD---------------YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 227 ~~~-gG~~~~---------------~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+|+ .|+..+ .|+ ..+..+.++++.+ ++|||++|||.++.|+.++|++|||+|++||++
T Consensus 186 ~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 186 INTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTAN 263 (296)
T ss_pred ECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 874 221100 111 1346677777766 799999999999999999999999999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 326 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~ 326 (344)
++. + .++..+.++|..+|...|+++++|+++
T Consensus 264 l~~-----p----~~~~~i~~~l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 264 FVD-----P----EAFKEIIEGLEAYLDEEGIKSIEELVG 294 (296)
T ss_pred hcC-----h----HHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 863 3 477899999999999999999999975
No 46
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.69 E-value=2e-15 Score=144.17 Aligned_cols=132 Identities=22% Similarity=0.201 Sum_probs=99.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC--H-HHHHHH---HHcCCcEEEEccCC--CC--------C-C--C---C---ch---
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT--A-EDARIA---VQAGAAGIIVSNHG--AR--------Q-L--D---Y---VP--- 238 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~--~-~~a~~~---~~~G~d~I~v~~~g--G~--------~-~--~---~---g~--- 238 (344)
..+.++++++.+++||++|.... . +.++.+ .+.|+++|...|.- |. . . . + |+
T Consensus 145 ~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~ 224 (310)
T PRK02506 145 TEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIK 224 (310)
T ss_pred HHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhcc
Confidence 34568999998899999999743 2 233333 35577777666531 11 0 0 0 1 22
Q ss_pred -hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 239 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 239 -~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
-.+..+.++++.++.++|||++|||.|++|+++.+.+||++||+++++++ +|. .++..+.+||+.+|...|
T Consensus 225 p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 225 PTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKELKAIMAEKG 296 (310)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHHHHHHHHHhC
Confidence 24456677777766679999999999999999999999999999999987 244 378889999999999999
Q ss_pred CCCHhhhcc
Q 019244 318 CRSLKEITR 326 (344)
Q Consensus 318 ~~~i~~l~~ 326 (344)
+++++|+++
T Consensus 297 ~~si~e~~G 305 (310)
T PRK02506 297 YQSLEDFRG 305 (310)
T ss_pred CCCHHHHhC
Confidence 999999986
No 47
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.69 E-value=9e-16 Score=145.92 Aligned_cols=102 Identities=25% Similarity=0.313 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccCC-CC--------------------CCCCch---
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-AR--------------------QLDYVP--- 238 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~g-G~--------------------~~~~g~--- 238 (344)
..+.++++++.+++||+||+.... +.++.+.++|+|+|+++|+- ++ +.-.|+
T Consensus 156 ~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~ 235 (299)
T cd02940 156 VEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVK 235 (299)
T ss_pred HHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcc
Confidence 445788999888999999987433 66888999999999988742 11 011222
Q ss_pred -hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 239 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 239 -~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++.+.++++.+.+++|||++|||++++|+.+++.+||++||+||.+++
T Consensus 236 p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 236 PIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 24788888888875579999999999999999999999999999999886
No 48
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.68 E-value=2.1e-15 Score=149.90 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=106.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccC-CC-----------------CC---CCCchh--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH-GA-----------------RQ---LDYVPA-- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~-gG-----------------~~---~~~g~~-- 239 (344)
..+.++++++.+++||+||+... .+.++.+.++|+|+|++.|+ .+ +. .-.|++
T Consensus 156 ~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~ 235 (420)
T PRK08318 156 VEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVK 235 (420)
T ss_pred HHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhh
Confidence 44578889988899999999743 25578899999999997663 12 10 112333
Q ss_pred --hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q 019244 240 --TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 316 (344)
Q Consensus 240 --~~~~l~~i~~~~~-~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~ 316 (344)
.++.+.++++.++ .++|||++|||.|+.|++++|.+||++||++|.+++ +|. .++..+.+||+.+|...
T Consensus 236 p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 236 PIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIVEDMISGLSHYMDEK 307 (420)
T ss_pred HHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhHHHHHHHHHHHHHHc
Confidence 4677777777653 279999999999999999999999999999999986 354 36788999999999999
Q ss_pred CCCCHhhhcccce
Q 019244 317 GCRSLKEITRDHI 329 (344)
Q Consensus 317 G~~~i~~l~~~~l 329 (344)
|..++.++....+
T Consensus 308 g~~si~e~iG~~~ 320 (420)
T PRK08318 308 GFASLEDMVGLAV 320 (420)
T ss_pred CcchHHHHhcccc
Confidence 9999999986433
No 49
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.64 E-value=7.8e-15 Score=142.03 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcC-----CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-------------CCCCCchh----
Q 019244 188 WKDVKWLQTITK-----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA---- 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-----~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-------------~~~~~g~~---- 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|+++|.-- ++.-.|++
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 356889998886 999999973 2 2447888999999999988410 00011232
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
.++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||++++. |+ .+++.+++||+.+|...|
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~----gP----~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE----GP----GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh----Cc----hHHHHHHHHHHHHHHhcC
Confidence 45677778777766799999999999999999999999999999999862 44 367889999999998765
No 50
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.57 E-value=1.8e-13 Score=129.89 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=87.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CH----HHHHHHHHc--CCcEEEEccCCC---------CC--C-----CCchh---
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TA----EDARIAVQA--GAAGIIVSNHGA---------RQ--L-----DYVPA--- 239 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~----~~a~~~~~~--G~d~I~v~~~gG---------~~--~-----~~g~~--- 239 (344)
..+.++++++.+++||++|+.. +. +.++.+.++ |+|+|++.|+-+ +. + .+|.+
T Consensus 145 ~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~ 224 (294)
T cd04741 145 TLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY 224 (294)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchh
Confidence 4456889999889999999973 22 234556677 999999865421 11 1 12222
Q ss_pred ----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 240 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 240 ----~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
.+..+.++++.++.++|||++|||.|++|+++++.+|||+||++|.+++ .|+ .+++.+.+||+.+|
T Consensus 225 i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~~ 294 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARIEKELEDIW 294 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHHHHHHHhhC
Confidence 3345567767765469999999999999999999999999999999986 244 36777888888764
No 51
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.57 E-value=1.2e-13 Score=133.05 Aligned_cols=113 Identities=27% Similarity=0.406 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcC-----CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-C------------CCCCch----h
Q 019244 188 WKDVKWLQTITK-----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-R------------QLDYVP----A 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-----~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-~------------~~~~g~----~ 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|+++|.-. . +.-.|+ .
T Consensus 186 ~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~ 265 (327)
T cd04738 186 RELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKER 265 (327)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHH
Confidence 356888888875 999999973 3 2346788999999999987311 0 000122 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~e 308 (344)
+++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||++++ +|+. ++..+.+|
T Consensus 266 ~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 266 STEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 4677788888776679999999999999999999999999999999986 2553 44555554
No 52
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.55 E-value=8.6e-14 Score=132.08 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCcEEEEeec---CH---HHHHHHHHcCCcEEEEccCCCC----------CCC-------Cch----hhH
Q 019244 189 KDVKWLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QLD-------YVP----ATI 241 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~---~~---~~a~~~~~~G~d~I~v~~~gG~----------~~~-------~g~----~~~ 241 (344)
+.++++++..++||++|+.. .. +.+..+.+.|+++|++.|.-+. ... .|+ -++
T Consensus 152 ~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL 231 (295)
T PF01180_consen 152 EIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIAL 231 (295)
T ss_dssp HHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHH
Confidence 35777888889999999974 22 2355566889999998774110 010 122 245
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
..+.++++.++.++|||++|||.|++|++++|.+||++|++++.+++. |.. +++.+.+||+.+|
T Consensus 232 ~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 232 RWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 667778887766799999999999999999999999999999999773 553 6778888888876
No 53
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.54 E-value=1.7e-13 Score=132.14 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=114.7
Q ss_pred eecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++||. .+||+.+||++ .+.+ .||.+.+++|... .+.+++..++.+++.++.--+...+++-.+.....
T Consensus 6 ~~lgi--~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPA 77 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHH
T ss_pred HHhCC--CcCEEcCCCCC--CChH----HHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccc
Confidence 34455 55999999976 4444 5999999999876 45688888888887776433344444333322111
Q ss_pred HH--HHHhhcCCCCcccccccccccccccccccchhhHHHHhh------cCCCCCcHHHHHHHHHhcCCcEEEEeecCHH
Q 019244 140 EA--DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG------QIDRSLSWKDVKWLQTITKLPILVKGVLTAE 211 (344)
Q Consensus 140 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~ 211 (344)
.. ..+..+. . ....+. ++.. .. ....+...... ..-+....+.++.+++. ++.++.. +.|++
T Consensus 78 ~~~~~~~~~~~--~--~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-gi~v~~~-v~s~~ 147 (330)
T PF03060_consen 78 DEEDAWPKELG--N--AVLELC-IEEG-VP--FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-GIKVIPQ-VTSVR 147 (330)
T ss_dssp HH-HHHHHHTH--H--HHHHHH-HHTT--S--HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-T-EEEEE-ESSHH
T ss_pred hhhhhhhhhhH--H--HHHHHH-HHhC-cc--cccccccccccceEEEEeecccchHHHHHHHHHc-CCccccc-cCCHH
Confidence 11 0000000 0 000000 0000 00 00000000000 00111124567777764 7777764 78999
Q ss_pred HHHHHHHcCCcEEEEccC--CCCCC-CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 212 DARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~--gG~~~-~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+|+++.++|+|+|++.|. ||+.. +.+ ++...++++++.+ ++|||+.|||.++.+++.+|+|||++|++|+.|+.
T Consensus 148 ~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 148 EARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred HHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 999999999999999874 66543 222 5788889998887 69999999999999999999999999999999985
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
.
T Consensus 225 t 225 (330)
T PF03060_consen 225 T 225 (330)
T ss_dssp S
T ss_pred c
Confidence 3
No 54
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.54 E-value=3.1e-13 Score=129.66 Aligned_cols=140 Identities=26% Similarity=0.311 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.+..+.++++++.+++||.+|... ..+.++.+.++|+|+|++++.-..+...+++.++.+.++++.+ ++|
T Consensus 117 ~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ip 194 (319)
T TIGR00737 117 DLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIP 194 (319)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCc
Confidence 445567999999999999999842 2355788999999999995421111223456778888888877 699
Q ss_pred EEEecCCCCHHHHHHHH-HcCCCEEEEchHHHHH--h---h----hcCh----HHHHHHHHHHHHHHHHHHHHhCCC-CH
Q 019244 257 VFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS--L---A----AEGE----KGVRRVLEMLREEFELAMALSGCR-SL 321 (344)
Q Consensus 257 via~GGIr~g~dv~kal-alGAd~V~ig~~~l~~--~---~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~i 321 (344)
||++|||.+++|+.+++ ..|||+||+||+++.. + . ..|. ....+.++.+.+.++......|.. .+
T Consensus 195 vi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (319)
T TIGR00737 195 VIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGL 274 (319)
T ss_pred EEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999 5799999999987632 0 0 1121 123345566666776666666632 34
Q ss_pred hhhcc
Q 019244 322 KEITR 326 (344)
Q Consensus 322 ~~l~~ 326 (344)
..+++
T Consensus 275 ~~~r~ 279 (319)
T TIGR00737 275 RIARK 279 (319)
T ss_pred HHHHH
Confidence 44443
No 55
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.54 E-value=6.8e-13 Score=127.36 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=103.0
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+++..+.++.+++.+++||.+|... ..+-++.+.++|+|+|++.+.-..+...|...++.+.++++.+ ++
T Consensus 118 p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~i 195 (321)
T PRK10415 118 PDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SI 195 (321)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CC
Confidence 3445567889999889999999852 1245678899999999995422123334667788899998877 79
Q ss_pred cEEEecCCCCHHHHHHHHH-cCCCEEEEchHHH-----HHhh----hcCh----HHHHHHHHHHHHHHHHHHHHhCCC-C
Q 019244 256 PVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-S 320 (344)
Q Consensus 256 ~via~GGIr~g~dv~kala-lGAd~V~ig~~~l-----~~~~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~ 320 (344)
|||++|||+|..|+.+++. .|||+||+||+++ +.-. ..|+ ...++.++.+.++++....+.|.+ .
T Consensus 196 PVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (321)
T PRK10415 196 PVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG 275 (321)
T ss_pred cEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHH
Confidence 9999999999999999997 6999999999664 3211 1121 224566777788888777777653 4
Q ss_pred Hhhhccc
Q 019244 321 LKEITRD 327 (344)
Q Consensus 321 i~~l~~~ 327 (344)
+.++++.
T Consensus 276 ~~~~rk~ 282 (321)
T PRK10415 276 YRIARKH 282 (321)
T ss_pred HHHHHHH
Confidence 5566654
No 56
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.52 E-value=9.3e-13 Score=125.60 Aligned_cols=185 Identities=23% Similarity=0.276 Sum_probs=122.4
Q ss_pred eecccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
++||. .+||+.+||++ .+++ .|+.+++++|... ...+++..++.++++++..-+.+.+++-.... .
T Consensus 6 ~~lgi--~~Pii~apM~~--~s~~----~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~--~ 75 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAW--VATG----SLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSP--F 75 (307)
T ss_pred HHhCC--CCCEEcCCCCC--CCCH----HHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCC--C
Confidence 34554 56999999976 3333 6999999999776 23467778778888776322222222211100 0
Q ss_pred HHHHHhhcCCCCcccccccccccccccccccchhhHHHHh-hcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHH
Q 019244 140 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA-GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQ 218 (344)
Q Consensus 140 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~ 218 (344)
..+.... + ++. .. ..+. ..+. ..+.++++++. +++|+. .+.+.+.++++.+
T Consensus 76 ~~~~~~~-----------~--~~~------~v----~~v~~~~g~---p~~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~ 127 (307)
T TIGR03151 76 VDELVDL-----------V--IEE------KV----PVVTTGAGN---PGKYIPRLKEN-GVKVIP-VVASVALAKRMEK 127 (307)
T ss_pred HHHHHHH-----------H--HhC------CC----CEEEEcCCC---cHHHHHHHHHc-CCEEEE-EcCCHHHHHHHHH
Confidence 0000000 0 000 00 0000 0011 23478888875 777765 4688999999999
Q ss_pred cCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 219 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 219 ~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+|+|.|++.++ ||+. +..+++..++++++.+ ++|||++|||.++.|+.+++++||++|++|+.|+...
T Consensus 128 ~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 128 AGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred cCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 99999999875 4442 2235788999998877 6999999999999999999999999999999998643
No 57
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.47 E-value=1.3e-12 Score=126.04 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcC-------CcEEEEeec--C----HHHHHHHHHcCCcEEEEccCCC-C--------C-CC---Cchh--
Q 019244 188 WKDVKWLQTITK-------LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-R--------Q-LD---YVPA-- 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-------~PvivK~v~--~----~~~a~~~~~~G~d~I~v~~~gG-~--------~-~~---~g~~-- 239 (344)
.+.++++++.++ +||++|... + .+.++.+.++|+|+|++.|+-- + . .. .|++
T Consensus 192 ~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 271 (335)
T TIGR01036 192 RDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQ 271 (335)
T ss_pred HHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHH
Confidence 345777777765 999999973 2 2446789999999999988411 0 0 01 1222
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 240 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 240 --~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+..+.++++.+++++|||+.|||.+++|+.+++.+||++|++||.+++
T Consensus 272 p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 272 DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 3445666666666679999999999999999999999999999999986
No 58
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.46 E-value=2.8e-12 Score=121.22 Aligned_cols=151 Identities=26% Similarity=0.366 Sum_probs=110.1
Q ss_pred cCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhH
Q 019244 100 AGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 175 (344)
Q Consensus 100 ~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 175 (344)
.+.++ ...+++...+.+++++++|++.+.+++.+|..... ..+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~----------------~~~----------------- 143 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGG----------------RQL----------------- 143 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------------ccc-----------------
Confidence 35666 34577777788888888999999999988853210 000
Q ss_pred HHHhhcCCCCCcHHHHHHHHHhcCCcEEEEee--cC----HHHHHHHHHcCCcEEEEccC-CCCC------------CC-
Q 019244 176 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIVSNH-GARQ------------LD- 235 (344)
Q Consensus 176 ~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v--~~----~~~a~~~~~~G~d~I~v~~~-gG~~------------~~- 235 (344)
..++.+..+.++++++.+++||++|.. .+ .+.++.+.++|+|+|+++|+ .++. ..
T Consensus 144 -----~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (289)
T cd02810 144 -----GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTG 218 (289)
T ss_pred -----ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCC
Confidence 001122345788999888999999986 34 35578899999999999874 2110 00
Q ss_pred --Cch----hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 236 --YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 236 --~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 219 g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 219 GLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 111 24566778877765479999999999999999999999999999999986
No 59
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.42 E-value=2.8e-12 Score=118.88 Aligned_cols=121 Identities=27% Similarity=0.436 Sum_probs=96.0
Q ss_pred CCcEEEEeec--CH----HHHHHHHHcCCcEEEEccCC-CCC----------CC---Cch----hhHHHHHHHHHHccCC
Q 019244 199 KLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ----------LD---YVP----ATIMALEEVVKATQGR 254 (344)
Q Consensus 199 ~~PvivK~v~--~~----~~a~~~~~~G~d~I~v~~~g-G~~----------~~---~g~----~~~~~l~~i~~~~~~~ 254 (344)
+.|+.+|... +. +.+....+.+.|+++++|.- -|. -. .|+ .+...++++....+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 3699999873 22 23555678999999998741 110 00 122 2456788888888889
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 327 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 327 (344)
+|||..|||.||.|+.+-+.+||+.|++++.+.| +|. .+++.++.||...|...|.+++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999876 355 3789999999999999999999998764
No 60
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.40 E-value=4.7e-12 Score=121.89 Aligned_cols=195 Identities=25% Similarity=0.278 Sum_probs=125.4
Q ss_pred ccccccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHH
Q 019244 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 142 (344)
Q Consensus 67 g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~ 142 (344)
+..+.+||+-+||++ .+++ .||.+..+.|.+. .....+..++.++++++..-+....+...+...
T Consensus 10 ~~~i~~PIiq~gM~~--vs~~----~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~----- 78 (336)
T COG2070 10 LLGIKYPIIQGGMAG--VSTP----ELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPA----- 78 (336)
T ss_pred ccCccCCeecCCccc--cCcH----HHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccc-----
Confidence 456778999999976 4444 6999999998776 334556677778777654433222121111100
Q ss_pred HHhhcCCCCcccccccccccccccccccchhhHHHHhhcCC----CC---CcHHHHHHHHHhcCCcEEEEeecCHHHHHH
Q 019244 143 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID----RS---LSWKDVKWLQTITKLPILVKGVLTAEDARI 215 (344)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~i~~i~~~~~~PvivK~v~~~~~a~~ 215 (344)
|.. .-.+... .+.... .....+...+- .. ..-+.++.++. .+..++.+ +.++..|++
T Consensus 79 -------~v~--~~~l~~~-~~~~~~----~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~-~g~~v~~~-v~~~~~A~~ 142 (336)
T COG2070 79 -------PVN--VNILVAR-RNAAEA----GVDAIIEGAGVPVVSTSFGAPPAEFVARLKA-AGIKVIHS-VITVREALK 142 (336)
T ss_pred -------cch--hheeccc-ccchHH----hhhhHHhcCCCCEEeccCCCCcHHHHHHHHH-cCCeEEEE-eCCHHHHHH
Confidence 000 0000000 000000 00000100000 11 13456888877 57777765 678999999
Q ss_pred HHHcCCcEEEEccC--CCCCC--CCchhhHHHHHHHHHHccCC-CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 216 AVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 216 ~~~~G~d~I~v~~~--gG~~~--~~g~~~~~~l~~i~~~~~~~-~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+.++|+|+|++.+. ||+.- +..+++...++++++++ + +|||++|||.++.++..|++|||++|+|||.|+..-
T Consensus 143 ~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 143 AERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred HHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhccc
Confidence 99999999999874 55532 34567888999999988 5 999999999999999999999999999999998643
No 61
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.2e-11 Score=115.70 Aligned_cols=143 Identities=31% Similarity=0.428 Sum_probs=111.3
Q ss_pred CCCcHHHHHHHHHhcC-CcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHHHHHHcc
Q 019244 184 RSLSWKDVKWLQTITK-LPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~-~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~i~~~~~ 252 (344)
++...+.|+.+++.++ +||.||... ..+.++.+.++|++.++| ||.+ +...++..++.+.++++.++
T Consensus 120 p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~ 197 (323)
T COG0042 120 PELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVP 197 (323)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCC
Confidence 3445567999999995 999999862 235688899999999999 5443 34456788999999999884
Q ss_pred CCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH-----HHHh---hhcCh---HHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 253 GRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV-----VYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~-----l~~~---~~~G~---~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
. +|||++|+|.|.+|+.+.|. .|+|+||+||.. ++.- ...|+ ......++.+...++......|...
T Consensus 198 ~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 276 (323)
T COG0042 198 S-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKG 276 (323)
T ss_pred C-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccH
Confidence 3 99999999999999999999 689999999954 4331 12233 3566788889999999999988667
Q ss_pred Hhhhcccce
Q 019244 321 LKEITRDHI 329 (344)
Q Consensus 321 i~~l~~~~l 329 (344)
+..++++..
T Consensus 277 ~~~~r~h~~ 285 (323)
T COG0042 277 LRRLRKHLG 285 (323)
T ss_pred HHHHHHHHH
Confidence 777776643
No 62
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.35 E-value=7.7e-11 Score=112.88 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..|++...+..+.+++.|++.+-++..+|..-.+ +.++ +. .++ .+++
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~----~~g~------Gs--------------------~Ll---~~p~ 109 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQ----NGNF------GA--------------------CLM---GNAD 109 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhC----CCCe------eh--------------------Hhh---cCHH
Confidence 4566666666666666777777777777643100 0000 00 000 1233
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec------CH----HHHHHHHHcCCcEEEEccCCCCC---C-------CCchhhHHHHH
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL------TA----EDARIAVQAGAAGIIVSNHGARQ---L-------DYVPATIMALE 245 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~------~~----~~a~~~~~~G~d~I~v~~~gG~~---~-------~~g~~~~~~l~ 245 (344)
+..+.++.+++.+++||.||... +. +-++.+.++|++.|+|. |++. . ...+..++.+.
T Consensus 110 ~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvH--gRt~~~qg~sg~~~~~~~~~~~~~i~ 187 (318)
T TIGR00742 110 LVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVH--ARKAWLSGLSPKENREIPPLRYERVY 187 (318)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEe--CCchhhcCCCccccccCCchhHHHHH
Confidence 45567999999889999999863 11 23678889999999994 4431 1 11223566777
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++++.+. ++|||++|||+|.+|+.+.+. |||+|||||.++
T Consensus 188 ~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 188 QLKKDFP-HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred HHHHhCC-CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHH
Confidence 7776653 699999999999999999996 999999999654
No 63
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.31 E-value=1e-10 Score=111.71 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCCcHHHHHHHHHhc--CCcEEEEeec-------CHHHHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccC
Q 019244 184 RSLSWKDVKWLQTIT--KLPILVKGVL-------TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG 253 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~--~~PvivK~v~-------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~ 253 (344)
+++..+.++.+++.+ ++||.||... ..+-++.+.++|+|.|+|++.-..+...+++ .++.+.++++.+
T Consensus 116 ~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-- 193 (312)
T PRK10550 116 PELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-- 193 (312)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--
Confidence 344566789999988 4999999752 1244688899999999995422223334544 678888888877
Q ss_pred CCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV 287 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l 287 (344)
++|||++|||.|++|+.+++. .|||+||+||.++
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 799999999999999999996 7899999999654
No 64
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.26 E-value=1.3e-10 Score=105.98 Aligned_cols=148 Identities=25% Similarity=0.282 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..+++...+..++++++|++.+.++..+|.. +... .++ +. ..+.++.
T Consensus 63 g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~-~~~~---~~~-----------G~------------------~l~~~~~ 109 (231)
T cd02801 63 GSDPETLAEAAKIVEELGADGIDLNMGCPSP-KVTK---GGA-----------GA------------------ALLKDPE 109 (231)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHH-HHhC---CCe-----------ee------------------hhcCCHH
Confidence 4567777777788888888888888877642 1100 000 00 0011234
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCH-------HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~-------~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+..+.++++++.+++|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+..+++.. ++||+
T Consensus 110 ~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi 187 (231)
T cd02801 110 LVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVI 187 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEE
Confidence 4556799999988899999986321 33577889999999996532222223455677778877754 79999
Q ss_pred EecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 259 LDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
++|||++.+|+.+++.. |||+|++||+++.
T Consensus 188 ~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 188 ANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred EeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 99999999999999998 8999999999875
No 65
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.23 E-value=1.7e-10 Score=105.89 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHhcCCcEEEEeec-----CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 186 LSWKDVKWLQTITKLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~-----~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
...+.++.+++ .++||.+|... +.+.++.+.++|+|+|.+++.. ......++.+.+++ . ++|||++
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~--~ipVIgn 197 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T--ELFIIGN 197 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--CCEEEEE
Confidence 34556888887 59999999962 3466788999999999886421 11234566676664 3 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
|||.+.+|+.+++..|||+||+||+
T Consensus 198 GgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 198 NSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 9999999999999999999999996
No 66
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.22 E-value=5.3e-10 Score=107.94 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=93.1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec------C----HHHHHHHHHcCCcEEEEccCCC-CCC-------CCchhhHHHH
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQL-------DYVPATIMAL 244 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~------~----~~~a~~~~~~G~d~I~v~~~gG-~~~-------~~g~~~~~~l 244 (344)
++++..+.++.+++.+++||.+|... + .+-++.+.++|+|+|+|.+.-+ .+. ...+..++.+
T Consensus 117 ~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i 196 (333)
T PRK11815 117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRV 196 (333)
T ss_pred CHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHH
Confidence 34455678999999889999999742 1 2336778899999999964211 111 1123356777
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH-----hh---hcCh----HHHHHHHHHHHHHHHHH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELA 312 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~-----~~---~~G~----~~v~~~l~~l~~el~~~ 312 (344)
.++++.+ .++|||++|||+|.+|+.++++ |||+||+||+++.. -. ..|. ....+.++.+.+.++..
T Consensus 197 ~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
T PRK11815 197 YRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERH 274 (333)
T ss_pred HHHHHhC-CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7777654 2699999999999999999997 89999999977532 11 0121 12345556666666665
Q ss_pred HHHhCCCCHhhhccc
Q 019244 313 MALSGCRSLKEITRD 327 (344)
Q Consensus 313 m~~~G~~~i~~l~~~ 327 (344)
... |. .+..+++.
T Consensus 275 ~~~-~~-~~~~~rk~ 287 (333)
T PRK11815 275 LAQ-GG-RLNHITRH 287 (333)
T ss_pred HHc-Cc-hHHHHHHH
Confidence 553 33 35555544
No 67
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.22 E-value=6.9e-10 Score=105.61 Aligned_cols=183 Identities=16% Similarity=0.184 Sum_probs=115.7
Q ss_pred ccceeecccccccccCChhhHHHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHc-CCcEEEeccCCccc-cccHHHHH
Q 019244 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----VYKDRNVVAQLVRRAERA-GFKAIALTVDTPRL-GRREADIK 144 (344)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~----~~~d~~~~~~~i~~a~~a-g~~~l~~tvd~~~~-g~r~~~~~ 144 (344)
.+||+.+||++.. . .-.||.+.+++|... .+.+++..++.++++++. +-+.+.+++-.... ..+...+.
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~ 76 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLA 76 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHH
Confidence 4799999997532 2 125899999998765 356788888899888773 43333333311000 00010000
Q ss_pred hhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEE
Q 019244 145 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI 224 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I 224 (344)
.... . ... -.....+.+ + .++++++ .++.++.. +.|++.++++.++|+|+|
T Consensus 77 vi~e--~-------------~v~--------~V~~~~G~P---~-~~~~lk~-~Gi~v~~~-v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 77 VVRA--I-------------KPT--------FALIAGGRP---D-QARALEA-IGISTYLH-VPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHh--c-------------CCc--------EEEEcCCCh---H-HHHHHHH-CCCEEEEE-eCCHHHHHHHHHcCCCEE
Confidence 0000 0 000 000001111 2 3567665 47777754 688999999999999999
Q ss_pred EEccC--CCCCCCCchhhHHHHHHHHHHcc--------CCCcEEEecCCCCHHHHHHHHHcCC--------CEEEEchHH
Q 019244 225 IVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGA--------SGIFIGRPV 286 (344)
Q Consensus 225 ~v~~~--gG~~~~~g~~~~~~l~~i~~~~~--------~~~~via~GGIr~g~dv~kalalGA--------d~V~ig~~~ 286 (344)
++.|+ ||+. +..+++..++++.+.+. .++|||+.|||.++..++.+++||| +.|+||+.|
T Consensus 128 VaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 128 IFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred EEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence 99884 6653 22345555565554431 2699999999999999999999999 799999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+..
T Consensus 206 l~t 208 (320)
T cd04743 206 LFT 208 (320)
T ss_pred hcc
Confidence 874
No 68
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.20 E-value=3e-10 Score=103.73 Aligned_cols=98 Identities=17% Similarity=0.083 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeec------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 187 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
..+.++.+++ .++||.||... +.+.++.+.++|+|+|.|.. ++. ..+...++.+.++++.++ .+|||++
T Consensus 123 l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~-g~~~a~~~~I~~i~~~~~-~ipIIgN 197 (231)
T TIGR00736 123 LKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYP-GKPYADMDLLKILSEEFN-DKIIIGN 197 (231)
T ss_pred HHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCC-CCchhhHHHHHHHHHhcC-CCcEEEE
Confidence 3456777774 48999999973 23668899999999999953 211 012257888999988773 4999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
|||.|.+|+.+++..|||+||+||+.+.+
T Consensus 198 GgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 198 NSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 99999999999999999999999988753
No 69
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.12 E-value=3.5e-09 Score=104.14 Aligned_cols=91 Identities=25% Similarity=0.258 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcC-CcEEEEcc-CCCCCCCCchhhHHHHHHHHH---Hc------cCCCcE
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QGRIPV 257 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G-~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~---~~------~~~~~v 257 (344)
+.|+++.+. + +.|.++|+.+.+.| +|.|++.. .||+. + ..++...++.+.+ .+ ..++||
T Consensus 153 ~~v~~L~~~-G-------~it~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~~~~ipV 222 (418)
T cd04742 153 RILKKLLAE-G-------KITEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGYRRPIRV 222 (418)
T ss_pred HHHHHHHHc-C-------CCCHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhccccCCCceE
Confidence 456777664 2 34999999999999 59999974 35653 2 2344455555543 22 125999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++.|||.++.+++.+++|||++|++||.|+-.
T Consensus 223 iAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 223 GAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 99999999999999999999999999999753
No 70
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.10 E-value=7.5e-09 Score=94.78 Aligned_cols=105 Identities=28% Similarity=0.416 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+.++++++ .+++++++ +.+.++++.+.+.|+|+|.+.+. +|.........++.+.++++.. ++||++.|||++
T Consensus 92 ~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~ 167 (236)
T cd04730 92 AEVVERLKA-AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIAD 167 (236)
T ss_pred HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 345666665 47888765 56778899999999999998653 2322111124567788887766 699999999999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcChH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGEK 296 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~~ 296 (344)
++|+.+++.+|||+|++|+.++....+.+..
T Consensus 168 ~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 168 GRGIAAALALGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred HHHHHHHHHcCCcEEEEchhhhcCcccCCCH
Confidence 9999999999999999999999876554443
No 71
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.06 E-value=8.4e-09 Score=102.10 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=63.3
Q ss_pred ecCHHHHHHHHHcC-CcEEEEcc-CCCCCCCCchhhHHHHHHHH---HHc------cCCCcEEEecCCCCHHHHHHHHHc
Q 019244 207 VLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIPVFLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 207 v~~~~~a~~~~~~G-~d~I~v~~-~gG~~~~~g~~~~~~l~~i~---~~~------~~~~~via~GGIr~g~dv~kalal 275 (344)
+.|+++|+.+.+.| +|.|++.. .||+. ...++...++.+. +.+ ..++||++.|||.|+.+++.+++|
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaL 245 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFML 245 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHc
Confidence 34999999999999 49998863 45653 2235556666664 333 126899999999999999999999
Q ss_pred CCCEEEEchHHHHH
Q 019244 276 GASGIFIGRPVVYS 289 (344)
Q Consensus 276 GAd~V~ig~~~l~~ 289 (344)
||++|++||.|+-.
T Consensus 246 GAdgV~~GT~flat 259 (444)
T TIGR02814 246 GADFIVTGSVNQCT 259 (444)
T ss_pred CCcEEEeccHHHhC
Confidence 99999999999864
No 72
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.06 E-value=9.1e-10 Score=105.27 Aligned_cols=141 Identities=28% Similarity=0.376 Sum_probs=94.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--------CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--------~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
..+.++.+++.+++||.+|... +.+-++.+.++|+++|+|.+.-..+...+++.++.+.++++.+ ++|||
T Consensus 110 ~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi 187 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVI 187 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEE
T ss_pred hhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeE
Confidence 3457899999999999999862 2345788999999999995443335556788999999999887 59999
Q ss_pred EecCCCCHHHHHHHHHc-CCCEEEEchH-----HHHHh---hhcCh----HHHHHHHHHHHHHHHHHHHHhC-CCCHhhh
Q 019244 259 LDGGVRRGTDVFKALAL-GASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEI 324 (344)
Q Consensus 259 a~GGIr~g~dv~kalal-GAd~V~ig~~-----~l~~~---~~~G~----~~v~~~l~~l~~el~~~m~~~G-~~~i~~l 324 (344)
++|||.|..|+.+.+.. |+|+||+||. +++.- ...|. ..+.+.++.+.+.+.......| ...+..+
T Consensus 188 ~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (309)
T PF01207_consen 188 ANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQM 267 (309)
T ss_dssp EESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred EcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHH
Confidence 99999999999999985 9999999995 45531 11111 1145566777777777777665 3456666
Q ss_pred cccce
Q 019244 325 TRDHI 329 (344)
Q Consensus 325 ~~~~l 329 (344)
++...
T Consensus 268 ~k~~~ 272 (309)
T PF01207_consen 268 RKHLK 272 (309)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 55543
No 73
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.94 E-value=3.1e-09 Score=99.86 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=104.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCH----HHHHHHHHcCCcEEEEccC------------------------CCCCCCC-c
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH------------------------GARQLDY-V 237 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~----~~a~~~~~~G~d~I~v~~~------------------------gG~~~~~-g 237 (344)
.-+...||+....+|++-|...+. +.++.+...|+.+|...|. ||..... .
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvR 340 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVR 340 (471)
T ss_pred hHHHhhhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccc
Confidence 445689999999999999987543 5577788889988876542 1111111 1
Q ss_pred hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q 019244 238 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 317 (344)
|-.+..+..|++.+. ..|+.+.|||.++.|.+..|.+|++.|++++..+. +|.. .++.+..||+..|.+.|
T Consensus 341 PIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~ 411 (471)
T KOG1799|consen 341 PIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHN 411 (471)
T ss_pred hHHHHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcC
Confidence 234455666666654 79999999999999999999999999999998864 4553 56789999999999999
Q ss_pred CCCHhhhccccee
Q 019244 318 CRSLKEITRDHIV 330 (344)
Q Consensus 318 ~~~i~~l~~~~l~ 330 (344)
..+|++++++.|.
T Consensus 412 ~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 412 FSTIEEFRGHSLQ 424 (471)
T ss_pred chhhhhccCcchh
Confidence 9999999988653
No 74
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.86 E-value=1.2e-07 Score=85.41 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
.+.+...+.++.+.++|++.+.+|.+.+.--..-+.++..+.-+.-++...+ +..+........+.+..++ +.+
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV--~~~~~~~~a~~aGA~fivs----p~~ 92 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTV--LSPEQVDRLADAGGRLIVT----PNT 92 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEec--CCHHHHHHHHHcCCCEEEC----CCC
Confidence 4667777788888889999999988877432222333333321111111111 1000000001111111122 223
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.+.++.. ...+.|++.. +.|++++..+.+.|+|+|.++-.. ..| ++.+..+...++.++|+++.||| +.
T Consensus 93 ~~~v~~~~-~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~----~~G---~~~l~~l~~~~~~~ipvvaiGGI-~~ 162 (206)
T PRK09140 93 DPEVIRRA-VALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS----QLG---PAGIKALRAVLPPDVPVFAVGGV-TP 162 (206)
T ss_pred CHHHHHHH-HHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC----CCC---HHHHHHHHhhcCCCCeEEEECCC-CH
Confidence 33444444 4457777765 899999999999999999984321 122 45566665555336999999999 78
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++...+++||++|.+++.++.
T Consensus 163 ~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHCCCeEEEEehHhcc
Confidence 9999999999999999999875
No 75
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.85 E-value=1.1e-07 Score=86.10 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=111.1
Q ss_pred HHHcCCccc--cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCC-C-Ccccccccccccccccccccch
Q 019244 97 ASAAGTIMV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-P-PFLTLKNFQGLDLGKMDEANDS 172 (344)
Q Consensus 97 A~~~g~~~~--~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~ 172 (344)
-.+.++.-+ ..+.+....+++.+.++|++.+.+|.++|.--...+.++..+.- | .-++...+ +..+........
T Consensus 10 l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV--~~~~~~~~a~~a 87 (213)
T PRK06552 10 LKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTV--LDAVTARLAILA 87 (213)
T ss_pred HHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeC--CCHHHHHHHHHc
Confidence 344444332 34677777888888999999999999988644334445444311 1 01111111 111111111112
Q ss_pred hhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc
Q 019244 173 GLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~ 252 (344)
+.+..++ +.++-+.+++-++ .++|++- ++.|+.++..+.++|+|.|.++-.+ ..| ...+..++..+
T Consensus 88 GA~Fivs----P~~~~~v~~~~~~-~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~- 153 (213)
T PRK06552 88 GAQFIVS----PSFNRETAKICNL-YQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPL- 153 (213)
T ss_pred CCCEEEC----CCCCHHHHHHHHH-cCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhC-
Confidence 2222333 2344455666554 5888774 6899999999999999999995311 123 34455555555
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.++|+++.|||. .+++..++++||+++.+|+.++..
T Consensus 154 p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 154 PQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred CCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 369999999998 799999999999999999999643
No 76
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.85 E-value=1.3e-07 Score=90.92 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCCCC--------chhhHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIM 242 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~--------g~~~~~ 242 (344)
.+..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 34567899999988 6899999862 3444 678889999999998643221111 122345
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHHHH
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 288 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~l~ 288 (344)
.+..+++.+ ++||+++|||++..++.++++. |||+|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 667777766 7999999999999999999998 7999999999985
No 77
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.3e-08 Score=95.07 Aligned_cols=97 Identities=29% Similarity=0.406 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHHHHHHHHHccCCCcEE
Q 019244 189 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.|+.+++.++.||.+|+. -|.+.++.+.++|++.++| ||.+- ...++..++.+..+++.+++ +|||
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipvi 207 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVI 207 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEE
Confidence 4688889999999999986 3567799999999999999 55431 22567789999999998854 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEchHHHH
Q 019244 259 LDGGVRRGTDVFKALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~g~dv~kala-lGAd~V~ig~~~l~ 288 (344)
+.|+|.+..|+-.++. .|||+||.|+..|+
T Consensus 208 aNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 208 ANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred eeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 9999999999999999 99999999996543
No 78
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.84 E-value=3.7e-08 Score=89.51 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=78.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
..+.++++++..++|+++ .+.+++++..+.++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 345677887765688776 4678999999999999999775554211 112235678888888776 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++|+.+++++|||+|++|+.++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999875
No 79
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.84 E-value=1.4e-08 Score=92.31 Aligned_cols=92 Identities=23% Similarity=0.224 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+++..+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|+.- ..+..+.+.+..+++..+++++|.+
T Consensus 110 ~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IKa 184 (221)
T PRK00507 110 ADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVKA 184 (221)
T ss_pred HHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEe
Confidence 4677777754 47889986 45444 456889999999887531 1233667777777777777899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+|||+|..|+.+.+.+||+.++..+.
T Consensus 185 sGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 185 SGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred eCCcCCHHHHHHHHHcCcceEccCcH
Confidence 99999999999999999999987654
No 80
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.82 E-value=6.6e-08 Score=84.77 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-chhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.+.++++++.+ -+++--+.|.|+++.+.++|+|.|-....|.+.... ..|.++.+.++.+. .+|||+.|+|.++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEGri~tp 156 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEESS--SH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecCCCCCH
Confidence 45699999987 566677899999999999999999776666543211 45788889888763 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.++|.+||++|.+|+++-.
T Consensus 157 e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHhcCCeEEEECcccCC
Confidence 9999999999999999998754
No 81
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.82 E-value=6.6e-08 Score=102.33 Aligned_cols=243 Identities=21% Similarity=0.193 Sum_probs=153.0
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCcc-------------ccCCH-HHHHHHHHHHHHcCCcEEEeccCCcccccc
Q 019244 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIM-------------VYKDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRR 139 (344)
Q Consensus 74 i~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-------------~~~d~-~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r 139 (344)
|.-.+|+++..+. +....||.|..+.|.-- ...|. +...+-|++...+.|.. | ...+.+-
T Consensus 957 FcTGaMS~GsIS~-EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~d~~rSAIKQVASgRFGV---T--s~yL~nA 1030 (2142)
T KOG0399|consen 957 FCTGAMSYGSISM-ETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLADGVDTMRSAIKQVASGRFGV---T--SYYLSNA 1030 (2142)
T ss_pred Hhcccccccccch-hhHHHHHHHHHhhcCcCCCCCCCCChhhcccccccchHHHHHHHHHhcccccc---c--hhhccCc
Confidence 4567899988775 46778999988887654 22333 34455577766554542 1 2222222
Q ss_pred H-HHHHhhcCCCCccccccccccccccccc----c-cchhhHHHHhhcCCCCC-cHHHHHHHHH----hc-CCcEEEEee
Q 019244 140 E-ADIKNRFTLPPFLTLKNFQGLDLGKMDE----A-NDSGLAAYVAGQIDRSL-SWKDVKWLQT----IT-KLPILVKGV 207 (344)
Q Consensus 140 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~-~~~~i~~i~~----~~-~~PvivK~v 207 (344)
. -.++ +.+|..+...+.++...+.. . +..+.-.+++|.++.+. +.+++.++.= .- .-.|.||.|
T Consensus 1031 DeLqIK----mAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLV 1106 (2142)
T KOG0399|consen 1031 DELQIK----MAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLV 1106 (2142)
T ss_pred hhhhhH----HhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEE
Confidence 1 1122 34455555555555443321 1 11122345666666654 7777666542 22 245889987
Q ss_pred cCH---HHHHHHHHcCCcEEEEccC-CCCCCC-------CchhhHHHHHHHH-----HHccCCCcEEEecCCCCHHHHHH
Q 019244 208 LTA---EDARIAVQAGAAGIIVSNH-GARQLD-------YVPATIMALEEVV-----KATQGRIPVFLDGGVRRGTDVFK 271 (344)
Q Consensus 208 ~~~---~~a~~~~~~G~d~I~v~~~-gG~~~~-------~g~~~~~~l~~i~-----~~~~~~~~via~GGIr~g~dv~k 271 (344)
.-. -.|--..++.||.|.|||| ||+... .|.|----|.+-. .-+++++-|=.||++|||.||+-
T Consensus 1107 SEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~i 1186 (2142)
T KOG0399|consen 1107 SEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAI 1186 (2142)
T ss_pred ecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEEEEecCccccchHHHH
Confidence 422 1234456778999999998 555311 1211100122222 23456788889999999999999
Q ss_pred HHHcCCCEEEEchHHHHHhhhc--------------------------C-hHHHHHHHHHHHHHHHHHHHHhCCCCHhhh
Q 019244 272 ALALGASGIFIGRPVVYSLAAE--------------------------G-EKGVRRVLEMLREEFELAMALSGCRSLKEI 324 (344)
Q Consensus 272 alalGAd~V~ig~~~l~~~~~~--------------------------G-~~~v~~~l~~l~~el~~~m~~~G~~~i~~l 324 (344)
|-+|||+-.++++.-|.+++|- | ++.|.+++-.+.+|++.+|..+|.++++|+
T Consensus 1187 AallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldem 1266 (2142)
T KOG0399|consen 1187 AALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEM 1266 (2142)
T ss_pred HHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence 9999999999999877776641 3 356889999999999999999999999998
Q ss_pred cc
Q 019244 325 TR 326 (344)
Q Consensus 325 ~~ 326 (344)
-+
T Consensus 1267 vG 1268 (2142)
T KOG0399|consen 1267 VG 1268 (2142)
T ss_pred hc
Confidence 54
No 82
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.80 E-value=7.3e-08 Score=87.65 Aligned_cols=97 Identities=23% Similarity=0.261 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+++..++|+++ .+.+.++++.+.++|+|.|.++++|-+.. ....+..+.+.++++.+ ++||++.|||+++
T Consensus 109 ~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH
Confidence 4577776644677764 56789999999999999998765432211 22334567888888776 6999999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+|+.+++++|||+|++|+.++.
T Consensus 186 ~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 186 EQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHCCCCEEEEchHhcC
Confidence 9999999999999999999764
No 83
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.76 E-value=2.2e-08 Score=89.85 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHH----HHH--hhcCCCCcccccccccccccccccccchhhHHHH--
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA----DIK--NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV-- 178 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~----~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (344)
..++.+.+++++|++.++.++++++....+....- ..+ .-.+||.|.........+.. ....++.+|.-
T Consensus 21 ~T~~~I~~l~~eA~~~~f~avCV~P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~---~ai~~GAdEiDmV 97 (228)
T COG0274 21 ATEEDIARLCAEAKEYGFAAVCVNPSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAR---EAIENGADEIDMV 97 (228)
T ss_pred CCHHHHHHHHHHHHhhCceEEEECcchHHHHHHHhccCCCeEEEEecCCCCCCChHHHHHHHHH---HHHHcCCCeeeee
Confidence 45677788999999999998888865443322110 000 01235666544322111100 00111222210
Q ss_pred hh-----cCCCCCcHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHH
Q 019244 179 AG-----QIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 244 (344)
Q Consensus 179 ~~-----~~~~~~~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l 244 (344)
.+ .++.+...++|+.+++..+-++.+|.+ ++.++ .+.+.++|+|+|..|.... .+..|.+.+
T Consensus 98 inig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv 173 (228)
T COG0274 98 INIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDV 173 (228)
T ss_pred eeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHH
Confidence 00 122222345788899988756788876 34433 4568899999999986321 334677777
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 245 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 245 ~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
.-+++.+++++.|-++|||||.+|+.+.+.+||.-++..+.
T Consensus 174 ~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 174 KLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred HHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 76777777799999999999999999999999877766653
No 84
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.64 E-value=3.6e-07 Score=83.58 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CC-----------------
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA----------------- 231 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG----------------- 231 (344)
..+++.++++++.+++|+++.+ +.++++++.+.+.|+|.|++... |.
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~ 138 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATK 138 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEEC
Confidence 3467889999998899999876 47899999999999999887521 11
Q ss_pred --C---C--------------C----------C--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 019244 232 --R---Q--------------L----------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 280 (344)
Q Consensus 232 --~---~--------------~----------~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V 280 (344)
. . . + ...+.++.+.++.+.. ++||++.|||++.+|+.+++..||++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 139 GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEE
Confidence 0 0 0 0 0113456677776655 799999999999999999999999999
Q ss_pred EEchHHHHH
Q 019244 281 FIGRPVVYS 289 (344)
Q Consensus 281 ~ig~~~l~~ 289 (344)
++|+.++.+
T Consensus 217 ~vg~~~~~~ 225 (234)
T cd04732 217 IVGKALYEG 225 (234)
T ss_pred EEeHHHHcC
Confidence 999999864
No 85
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.64 E-value=9.5e-07 Score=82.50 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=66.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 278 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd 278 (344)
++-+++ .+.+.++++++.++|+|.|-+.+ +.+..-.+.++...++.+.+++..++|+-|||.+++|+.+++.+|||
T Consensus 160 Gl~~lv-evh~~~E~~~A~~~gadiIgin~---rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad 235 (260)
T PRK00278 160 GLDVLV-EVHDEEELERALKLGAPLIGINN---RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGAD 235 (260)
T ss_pred CCeEEE-EeCCHHHHHHHHHcCCCEEEECC---CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCC
Confidence 544443 46788999999999999988743 32222233456666666666545799999999999999999999999
Q ss_pred EEEEchHHHH
Q 019244 279 GIFIGRPVVY 288 (344)
Q Consensus 279 ~V~ig~~~l~ 288 (344)
+|.+|+.++.
T Consensus 236 ~vlVGsaI~~ 245 (260)
T PRK00278 236 AVLVGESLMR 245 (260)
T ss_pred EEEECHHHcC
Confidence 9999999986
No 86
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.64 E-value=4.8e-07 Score=84.01 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC------------------------C------Cc
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------------------------D------YV 237 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~------------------------~------~g 237 (344)
.+.+..++..++.|++ -.+.|.+++..+.+.|+|.|-....|++.. . ..
T Consensus 101 ~~~~~~iK~~~~~l~M-AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFV-CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEE-ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4568888888877766 468999999999999999998877666532 0 01
Q ss_pred hhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.|.++.+.. ++||+ +.|||.+++|+.+++.+||++|.+|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 24667888888765 69997 999999999999999999999999999874
No 87
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.64 E-value=3.6e-07 Score=88.37 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCC--CCC-chhhHHHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVK 249 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~--~~~-g~~~~~~l~~i~~ 249 (344)
.|..+.|+.||+.++.||.+|... +.++ ++.+.++|+|+|.|++..-.. ... ....++...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 272 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE 272 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh
Confidence 345678999999988999999863 4444 567888999999997532110 111 1113455666776
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++||++.|+|+++.++.++|+-| ||+|++||+++-
T Consensus 273 ~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 273 HA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred hc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 66 79999999999999999999987 999999999984
No 88
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.63 E-value=3.8e-07 Score=82.71 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+.+.++++.++.++|+++.|||.+.+|+.+++.+||++|.+|+.++.
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3455666666543468999999999999999999999999999999875
No 89
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.62 E-value=1.4e-06 Score=84.33 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEee--------cCHHH----HHHHHHcCCcEEEEccCCCC--CC-CCch-hhHHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEE 246 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~~gG~--~~-~~g~-~~~~~l~~ 246 (344)
.+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.|+.++.+ +. .... ...+.+.+
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH
Confidence 44567899999998 689999965 24444 45677899999999753321 11 1111 12456667
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+++.+ ++||++.|||.+..++.++++.| ||+|++||+++.
T Consensus 285 ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 285 IRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 77766 79999999999999999999998 999999999985
No 90
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.60 E-value=1.2e-06 Score=78.65 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+...+.++.+.++|++.+.+|..+|..-.-.+.++..| |. -++..++- ..+........+.+..++ +.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl--~~~~a~~a~~aGA~Fivs----P~ 88 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVL--NPEQLRQAVDAGAQFIVS----PG 88 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCC--CHHHHHHHHHcCCCEEEC----CC
Confidence 46677777888888999999999998876433334444433 21 11111221 100000001112222232 23
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++.++ .++|++- +++|+.++..+.++|+|.|+++-.+ .-+|+..+.. ++.-+ .+++++.+|||.
T Consensus 89 ~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yika---l~~pl-p~i~~~ptGGV~- 158 (204)
T TIGR01182 89 LTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLKA---LAGPF-PQVRFCPTGGIN- 158 (204)
T ss_pred CCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHHH---HhccC-CCCcEEecCCCC-
Confidence 44455666554 5888775 7899999999999999999997421 0122444444 43344 479999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++..++++||.+|++|+.++.
T Consensus 159 ~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 159 LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HHHHHHHHhCCCEEEEEChhhcC
Confidence 58999999999999999998864
No 91
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.60 E-value=3.6e-07 Score=79.83 Aligned_cols=96 Identities=26% Similarity=0.343 Sum_probs=69.0
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHH-HHHcCCcEEEEccCCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~-~~~~G~d~I~v~~~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+.++++++.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..+... .++||+++||
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GG 178 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGG 178 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECC
Confidence 456789999988 89999997643322222 689999999998754432222111 12333333332 3799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEch
Q 019244 263 VRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~ 284 (344)
|.+++++.+++.+|||+|++||
T Consensus 179 i~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 179 INDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEecC
Confidence 9999999999999999999986
No 92
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.59 E-value=9.1e-07 Score=78.71 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+...++..+.|+++ ++.|++++..+.++|+|+|.++... +...+.+..+.+..+ .+|+++.||| +.+++
T Consensus 88 ~~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~-------~~g~~~~~~l~~~~~-~~p~~a~GGI-~~~n~ 157 (190)
T cd00452 88 EVVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPAE-------AVGPAYIKALKGPFP-QVRFMPTGGV-SLDNA 157 (190)
T ss_pred HHHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCc-------ccCHHHHHHHHhhCC-CCeEEEeCCC-CHHHH
Confidence 344445556888776 6779999999999999999985321 113345555554442 5999999999 89999
Q ss_pred HHHHHcCCCEEEEchHHHH
Q 019244 270 FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~l~ 288 (344)
.+++..||++|.+++.++.
T Consensus 158 ~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 158 AEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHHCCCEEEEEchhcch
Confidence 9999999999999998863
No 93
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.58 E-value=1.4e-06 Score=84.31 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHhcCC-cEEEEeec-----------CHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHH
Q 019244 185 SLSWKDVKWLQTITKL-PILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 248 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~-PvivK~v~-----------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~ 248 (344)
.|..+.|+.||+.++. ||.+|... +.++ ++.+.+.|+|+|.|+.. ..........++...+++
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~ik 281 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFLR 281 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHHH
Confidence 4566789999998854 89999852 3333 57788999999999642 221111234556677777
Q ss_pred HHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 249 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 249 ~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+.+ ++||+++|||+ +.++.++++.| ||+|++||+++.
T Consensus 282 ~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 282 KAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 777 79999999997 99999999987 999999999975
No 94
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.58 E-value=7.9e-07 Score=82.61 Aligned_cols=98 Identities=24% Similarity=0.304 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC---------------------C----------C
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 236 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~---------------------~----------~ 236 (344)
.+.+..++..+++|++. ++.+.+++.++.+.|+|.|-..+.||+.. . .
T Consensus 103 de~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 45688888888888775 57899999999999999998877777632 0 0
Q ss_pred chhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 237 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 237 g~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
-.+.++.|.++.+.. ++||+ +.|||.|+.|+.+++.+||++|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 124667788887754 79998 999999999999999999999999999875
No 95
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.56 E-value=7.3e-07 Score=81.46 Aligned_cols=101 Identities=25% Similarity=0.434 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------C-CC-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G-AR----------------- 232 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------g-G~----------------- 232 (344)
+++.++++++.+++|+.+++ +.+.++++.+.++|+|.|++... | .+
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 45678888887788888876 46788888888888888877521 1 00
Q ss_pred -C---C--------------C------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 233 -Q---L--------------D------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 233 -~---~--------------~------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
. . + ...+.++.+.++.+.. ++|+++.|||++.+|+.+++.+||+.|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 0 0 0 0112356666666654 79999999999999999999999999999
Q ss_pred chHHHHH
Q 019244 283 GRPVVYS 289 (344)
Q Consensus 283 g~~~l~~ 289 (344)
|+.++.+
T Consensus 218 g~a~~~~ 224 (230)
T TIGR00007 218 GKALYEG 224 (230)
T ss_pred eHHHHcC
Confidence 9999864
No 96
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.56 E-value=1.2e-07 Score=85.63 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=66.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
.++++.++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+..+++.++++++|
T Consensus 104 v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCeE
Confidence 4457888888763 3334444 44433 4678899999999985211 1234555555556666668999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.++||||+.+|+++.+.+||+-++..+
T Consensus 179 KaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 999999999999999999999876643
No 97
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.54 E-value=1.3e-05 Score=74.69 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
...+.+.++++.. +.||++.|||+|++++.+++..|||+|.+|+.++.-+.
T Consensus 185 ~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 185 ALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred hHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 3456677777654 67999999999999999999999999999999987654
No 98
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.50 E-value=3.6e-06 Score=81.72 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHhcCC--cEEEEee--------cCHHH----HHHHHHcC-CcEEEEccCCCCCC----------CCch-
Q 019244 185 SLSWKDVKWLQTITKL--PILVKGV--------LTAED----ARIAVQAG-AAGIIVSNHGARQL----------DYVP- 238 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~--PvivK~v--------~~~~~----a~~~~~~G-~d~I~v~~~gG~~~----------~~g~- 238 (344)
.+..+.++.+|+.++. ||.+|.. .+.++ ++.+.++| +|+|.|+...-... ....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 4456789999999865 4555544 13333 56788898 89999964211110 0111
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..++....+++.+ ++||+++|||++.+++.++++.| ||+|++||+++.
T Consensus 272 ~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1345666777766 79999999999999999999976 999999999985
No 99
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.49 E-value=3.7e-06 Score=76.46 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=109.5
Q ss_pred HHHcCCcc--ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcC--CCC-cccccccccccccccccccc
Q 019244 97 ASAAGTIM--VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPP-FLTLKNFQGLDLGKMDEAND 171 (344)
Q Consensus 97 A~~~g~~~--~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~--~~~-g~~~~~~~~~~~~~~~~~~~ 171 (344)
-.+.++.- -..+.+....+++.+.++|++.+.+|..+|..-.....++..+. .|. -++...+ +..+.......
T Consensus 12 l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTV--l~~e~a~~a~~ 89 (222)
T PRK07114 12 MKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSI--VDAATAALYIQ 89 (222)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeC--cCHHHHHHHHH
Confidence 34445433 24577778888889999999999999988864333334432221 221 0111111 11000000111
Q ss_pred hhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc
Q 019244 172 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 251 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~ 251 (344)
.+.+..++ +.++-+.++..++ .++|++ -+++|+.++..+.++|++.|+++-.+ ..|++.+ +.+...+
T Consensus 90 aGA~FiVs----P~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~~i---kal~~p~ 156 (222)
T PRK07114 90 LGANFIVT----PLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGPGFV---KAIKGPM 156 (222)
T ss_pred cCCCEEEC----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCHHHH---HHHhccC
Confidence 12222233 2344555666655 588876 57899999999999999999997422 1234433 4343334
Q ss_pred cCCCcEEEecCCCC-HHHHHHHHHcCCCEEEEchHHH
Q 019244 252 QGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 252 ~~~~~via~GGIr~-g~dv~kalalGAd~V~ig~~~l 287 (344)
.+++++.+|||.- ..++..+++.||.+|++|+.++
T Consensus 157 -p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 157 -PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred -CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 3799999999995 4899999999999999999876
No 100
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.47 E-value=3.1e-06 Score=82.02 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEee--------cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc---------h--h
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------P--A 239 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g---------~--~ 239 (344)
.|..+.|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|+|.|+...-.+.... + .
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 45678899999998 489999985 35444 5678899999999964211111110 0 0
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..+...++++.+ ++||+++|+|.+..++.++++.| ||.|++||+++-
T Consensus 280 ~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 280 FLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 134556677766 79999999999999999999987 999999999974
No 101
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.44 E-value=3.2e-06 Score=78.82 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------CC---------Cc
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LD---------YV 237 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~~---------~g 237 (344)
.+.+..++..+++|++. ++.+.+++.++.+.|+|.|-..|-.|+. +. .-
T Consensus 110 d~~~~~~K~~f~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 35688888888888775 5789999999999999999877544431 00 01
Q ss_pred hhhHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 238 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~~~~~vi--a~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.|.++.+.. ++||+ +.|||.|+.|+.+++.+||++|.+|+.++.
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 24667788887765 79998 999999999999999999999999999874
No 102
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=4.7e-06 Score=73.66 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 276 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG 276 (344)
..-+.+--+.|.|++..+.++|+|+|-..-+|.+... -..|.++.++++.+ ...+||+.|.+.|++++.+++.+|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~---~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD---AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh---CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 4457777789999999999999999966555544321 23467788888776 379999999999999999999999
Q ss_pred CCEEEEchHHHH
Q 019244 277 ASGIFIGRPVVY 288 (344)
Q Consensus 277 Ad~V~ig~~~l~ 288 (344)
|++|.+|+++-.
T Consensus 203 a~aVvVGsAITR 214 (229)
T COG3010 203 ADAVVVGSAITR 214 (229)
T ss_pred CeEEEECcccCC
Confidence 999999998743
No 103
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.42 E-value=3.2e-06 Score=77.98 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEccCC--CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~ 286 (344)
.+.++.+.+.|+|+|.+++.. |+ ..+ ..++.+.++.+.. ++||+++|||++.+|+.+++.. |||+|++|+++
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~--~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT--KKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC--CCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 466788999999999996521 21 112 3567777777665 7999999999999999999997 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+.+
T Consensus 227 ~~~ 229 (243)
T cd04731 227 HFG 229 (243)
T ss_pred HcC
Confidence 864
No 104
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.41 E-value=6e-06 Score=74.02 Aligned_cols=94 Identities=22% Similarity=0.246 Sum_probs=68.2
Q ss_pred HHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
++.+++.+ +..|.+ .+.+.++++.+.+.|+|+|.++....+.. ...+..++.+.++.+.+ ++||++.||| +..
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34455544 344554 35788999999999999997653222111 11123456777776655 6999999999 899
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+++.+||++|++++.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999975
No 105
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.41 E-value=2.1e-06 Score=78.29 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=63.0
Q ss_pred ecCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
..++..++++.++|++.|-.-+ -| +. .|+.+.+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-sg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-SG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4689999999999999995511 12 11 3555677888777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 9864
No 106
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.41 E-value=2.8e-06 Score=83.68 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhc--CCcEEEEeec----------------------CHHH----HHHHHHcCCcEEEEccCCCCCCCC--
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQLDY-- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~----------------------~~~~----a~~~~~~G~d~I~v~~~gG~~~~~-- 236 (344)
..+.|+.||+.+ +.||.+|... +.++ ++.+.++|+|+|.|++....+..+
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~ 283 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNH 283 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccccccc
Confidence 346799999988 4699999752 2343 567778999999997422111111
Q ss_pred -----chh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 237 -----VPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 237 -----g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
... .......+++.+ ++||+++|||+++.++.++|+-| ||+|++||+++.
T Consensus 284 ~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 284 PPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 111 124456666666 79999999999999999999977 999999999985
No 107
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.41 E-value=3.6e-06 Score=77.44 Aligned_cols=100 Identities=23% Similarity=0.410 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CC-C-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R----------------- 232 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG-~----------------- 232 (344)
.++.|+++.+.+++|+++-+ +.+.++++.+.++|+|.|+++.. |. +
T Consensus 64 ~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 64 NAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred cHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 46677777777788888754 46778888888888888777531 10 0
Q ss_pred ------C----------------------CC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 233 ------Q----------------------LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 233 ------~----------------------~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
. .+ ...+.++.+.++.+.+ ++||++.|||++.+|+.+++.+||+.|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 00 0113456677777665 69999999999999999999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
|+.++.
T Consensus 222 gsa~~~ 227 (241)
T PRK13585 222 GSALYK 227 (241)
T ss_pred EHHHhc
Confidence 999975
No 108
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.39 E-value=6.1e-05 Score=70.40 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=39.5
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
.+..+++.. +.||...+||++.+++.+....|||+|.+|+.++.-+.
T Consensus 193 ~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 193 LIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred HHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 445555533 79999999999999999999999999999999987554
No 109
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.38 E-value=4.8e-06 Score=76.56 Aligned_cols=101 Identities=27% Similarity=0.325 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCCC---C------------
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GARQ---L------------ 234 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~~---~------------ 234 (344)
.+.+.|+++.+.+++|+.+.+ +.+.|+++++.++|++.+++.+. |.+- +
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 356789999998899999976 57899999999999999988531 1110 0
Q ss_pred ------------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 235 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 235 ------------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
++ ..+.++.+.++.+.. ++||+++|||+|.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 113455666666554 79999999999999999999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
|+.++.
T Consensus 221 G~a~~~ 226 (234)
T PRK13587 221 GKAAHQ 226 (234)
T ss_pred hHHHHh
Confidence 999875
No 110
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.37 E-value=3.1e-06 Score=77.30 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=62.4
Q ss_pred ecCHHHHHHHHHcCCcEEEE--ccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v--~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
..++..++++.++|++.|-. +--| +. .|+.+.+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 46899999999999999955 2112 11 3455667777777654 7999999999999999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.+..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 9864
No 111
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.35 E-value=1.7e-05 Score=71.08 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+.....++.+.++|++.+.+|.++|..-.-.+.++..+ |. -++...+ +..+........+.+..++ +.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTV--l~~e~a~~ai~aGA~FivS----P~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTI--LNAKQFEDAAKAGSRFIVS----PG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeC--cCHHHHHHHHHcCCCEEEC----CC
Confidence 46677777888888899999999999886433333343333 21 1111111 1100000011112222232 33
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++-++ .++|++ -+++|+.++..+.++|++.|+++-.+ .-+|+.- ++.++.-+ ++++++.+|||.
T Consensus 85 ~~~~vi~~a~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~~y---ikal~~pl-p~~~l~ptGGV~- 154 (201)
T PRK06015 85 TTQELLAAAND-SDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGAAF---LKALSSPL-AGTFFCPTGGIS- 154 (201)
T ss_pred CCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCHHH---HHHHHhhC-CCCcEEecCCCC-
Confidence 45556666554 588876 56899999999999999999997421 0012433 44444445 379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l 287 (344)
..++..++++|+.+++.|+.+.
T Consensus 155 ~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 155 LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHHHHHHHhCCCeEEEEchhhC
Confidence 5799999999988777776664
No 112
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.34 E-value=2.2e-06 Score=83.58 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhcC------CcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHH
Q 019244 187 SWKDVKWLQTITK------LPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEE 246 (344)
Q Consensus 187 ~~~~i~~i~~~~~------~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~ 246 (344)
..+.++.||+.++ .||.+|... +.++ ++.+.++|+|+|.|+....+.. .........+..
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ 276 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMEL 276 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHH
Confidence 3467899999875 456666541 3333 5778899999999986432211 111112344455
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+..++|||+.|||++++++.++++.|||+|++||+++.
T Consensus 277 ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 277 VKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 555554479999999999999999999999999999999985
No 113
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.34 E-value=3.2e-06 Score=75.98 Aligned_cols=119 Identities=25% Similarity=0.356 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc------------------------------------
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS------------------------------------ 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~------------------------------------ 227 (344)
...++.|+++.+...+|+.|.+ +.+.+|+++++.+|||-|.+-
T Consensus 60 ~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~ 139 (256)
T COG0107 60 ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGEN 139 (256)
T ss_pred hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCC
Confidence 3356678888888899998876 579999999999999977762
Q ss_pred ------cCCCCC---C------------------------CCc--hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH
Q 019244 228 ------NHGARQ---L------------------------DYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 228 ------~~gG~~---~------------------------~~g--~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka 272 (344)
.|||+. + |+. .-.++.++.+++.+ ++|||+|||..+.+|...+
T Consensus 140 ~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~ea 217 (256)
T COG0107 140 GWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEA 217 (256)
T ss_pred CcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHH
Confidence 123331 0 010 01455677777776 8999999999999999999
Q ss_pred HHcC-CCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 273 LALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 273 lalG-Ad~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
+..| ||++..++-|.|+ + .-..|++..|...|.
T Consensus 218 f~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 218 FTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred HHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 9988 9999988888764 2 234566666666654
No 114
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.32 E-value=4.3e-06 Score=77.99 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH-HcCCCEEEEchHHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 289 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal-alGAd~V~ig~~~l~~ 289 (344)
+.++.+.+.|++.+.+.+...-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557889999999999864211112233 4788888888775 79999999999999999999 7999999999999883
No 115
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=7.7e-06 Score=73.14 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 106 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 106 ~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
..+.+....+.+..-+.|++++.+|..+|.-..-.+.+++.+. .--++...+ +...........+.+..++| .
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTV--L~~~q~~~a~~aGa~fiVsP----~ 93 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTV--LNPEQARQAIAAGAQFIVSP----G 93 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccc--cCHHHHHHHHHcCCCEEECC----C
Confidence 4677888888888899999999999999976655555555432 001111111 11111111111222333333 3
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.++.- ...++|++ -++.|+-++..+.++|++.++++-... -+|+.-+.++. ....+++++.+|||.
T Consensus 94 ~~~ev~~~a-~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~~ka~~----gP~~~v~~~pTGGVs- 163 (211)
T COG0800 94 LNPEVAKAA-NRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPAMLKALA----GPFPQVRFCPTGGVS- 163 (211)
T ss_pred CCHHHHHHH-HhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHHHHHHHc----CCCCCCeEeecCCCC-
Confidence 444445544 44588876 578999999999999999999974321 12333322221 112379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..++..++++|+.+|++|+-+..
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHHHHHhCCceEEecCccccC
Confidence 56999999999999999987763
No 116
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.31 E-value=1.1e-05 Score=71.79 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
.+++...+.++.+-++|.+.+.++...+..-......+..+ +. .......-+..+........+.+..+. +.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~-~~~g~gtvl~~d~~~~A~~~gAdgv~~----p~~ 93 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PE-CIIGTGTILTLEDLEEAIAAGAQFCFT----PHV 93 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-cEEeEEEEEcHHHHHHHHHcCCCEEEC----CCC
Confidence 46666777788888888888888877663211112222111 10 000000000000000000000001111 122
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.- .+...++..+++.++. +.|++++..+.+.|+|+|.+.-.. . ....+.+..++..+ .++|+++.||| +.
T Consensus 94 ~~-~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~---~---~~G~~~l~~~~~~~-~~ipvvaiGGI-~~ 163 (187)
T PRK07455 94 DP-ELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ---A---VGGADYIKSLQGPL-GHIPLIPTGGV-TL 163 (187)
T ss_pred CH-HHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC---c---ccCHHHHHHHHhhC-CCCcEEEeCCC-CH
Confidence 32 3444555567787765 899999999999999999984321 1 11245566666555 36999999999 58
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+++...++.||++|.+++.++
T Consensus 164 ~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 164 ENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHHHHHHCCCeEEEEehhcc
Confidence 999999999999999999875
No 117
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.29 E-value=7.6e-06 Score=74.93 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH-HHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k-alalGAd~V~ig~~~l 287 (344)
.+.++.+.++|+|.|++++....+...| +.++.+.++.+.+ ++||+++|||++.+|+.+ ....||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4667899999999999986321111223 4677888888766 799999999999999999 5569999999999874
No 118
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.28 E-value=5.5e-06 Score=73.95 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhhHHHHhhcCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 185 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (344)
.+.+...++++...+.|++.+.+|..+|..-.-.+.++..+ |. -++...+ +..+........+.+..++ +.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV--~~~e~a~~a~~aGA~FivS----P~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTV--LTAEQAEAAIAAGAQFIVS----PG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES----SHHHHHHHHHHT-SEEEE----SS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEec--cCHHHHHHHHHcCCCEEEC----CC
Confidence 46666777888888899999999999875432223333333 21 1111111 1000000011112222232 34
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
++-+.+++-++ .++|++ -+++|+.++..+.++|++.++++-.+- -+|+. .++.++..+ ++++++.+|||.
T Consensus 89 ~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~~---~ik~l~~p~-p~~~~~ptGGV~- 158 (196)
T PF01081_consen 89 FDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGPS---YIKALRGPF-PDLPFMPTGGVN- 158 (196)
T ss_dssp --HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHHH---HHHHHHTTT-TT-EEEEBSS---
T ss_pred CCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcHH---HHHHHhccC-CCCeEEEcCCCC-
Confidence 45556666665 488876 568999999999999999999974321 12243 444444444 379999999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..++..++++|+.+|++|+.++..
T Consensus 159 ~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 159 PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHHhCCCEEEEECchhcCH
Confidence 489999999999999999988653
No 119
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.26 E-value=0.00012 Score=67.67 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 240 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 240 ~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
..+.+.++++.. ++||.+.|||++.+++.++... ||.+.+|+.++.-+.
T Consensus 175 ~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 175 LKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred HHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 445666776643 7999999999999999999999 999999999987654
No 120
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.25 E-value=1e-05 Score=74.15 Aligned_cols=100 Identities=27% Similarity=0.430 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------C------------C-------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G------------A------- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------g------------G------- 231 (344)
+++.|+++.+.+++|+.+.+ +.+.++++.+.++|++.++++.. | |
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 45678999999999999987 47899999999999999988521 1 1
Q ss_pred -CC---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 019244 232 -RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 281 (344)
Q Consensus 232 -~~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ 281 (344)
.. .++ ..+.++.+.++++.. ++|+|++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 00 011 124567778887776 8999999999999999999999999999
Q ss_pred EchHHHH
Q 019244 282 IGRPVVY 288 (344)
Q Consensus 282 ig~~~l~ 288 (344)
+|++|+.
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999975
No 121
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.24 E-value=4.6e-06 Score=77.00 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc---CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal---GAd~V~ig~~~ 286 (344)
.+-++.+.+.|++.+++.+...-+...| +.++.+.++.+.. ++|||++|||+|.+|+.+++.+ ||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 3557889999999999965322122234 4788899988876 7999999999999999998754 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 874
No 122
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.24 E-value=5.7e-05 Score=69.86 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=73.5
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
++.+++ .++..++=.. .+.+..+...+..-..+.++-.||+....-....+.+.++++... +.||+++|||++.++
T Consensus 122 ~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~ 199 (244)
T PRK13125 122 VEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPED 199 (244)
T ss_pred HHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHH
Confidence 444544 3665554332 346778888888777776654444322222333456677766553 578999999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHH
Q 019244 269 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~ 306 (344)
+.+++..|||++.+|+.++.-+...+.+...++++.++
T Consensus 200 i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~ 237 (244)
T PRK13125 200 ARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIR 237 (244)
T ss_pred HHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999886443333333444444433
No 123
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.24 E-value=2.2e-05 Score=76.64 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec------------CHHH----HHHHHHcCCcEEEEccCCC-CCCCCchhhHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMALE 245 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~------------~~~~----a~~~~~~G~d~I~v~~~gG-~~~~~g~~~~~~l~ 245 (344)
.|..+.|+.||+.+ +.||.+|... ++++ ++.+.++|+|+|.++...- .+...+ .......
T Consensus 195 Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~ 273 (361)
T cd04747 195 RFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHH
Confidence 45678899999998 4899999862 3333 4556899999999975310 111111 1234445
Q ss_pred HHHHHccCCCcEEEecCC------------------CCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 246 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGI------------------r~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+++.+ ++||++.|+| ++++++.++|.-| ||+|++||+++.
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 566655 7999999999 5999999999976 999999999975
No 124
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.22 E-value=2.3e-05 Score=71.45 Aligned_cols=101 Identities=28% Similarity=0.453 Sum_probs=81.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCCC-----------------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GARQ----------------- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~~----------------- 233 (344)
+.+.+++|.+.+++||-+.+ +.+.++++.+.++|++.++++.. |++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 56789999999999998876 57899999999999999988632 2210
Q ss_pred ----------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 019244 234 ----------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 282 (344)
Q Consensus 234 ----------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~i 282 (344)
.|+ .-+..+.+.++.+++ ++|+++||||+|-.|+..+..+ |...|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 011 235677788888887 8999999999999999988889 9999999
Q ss_pred chHHHHH
Q 019244 283 GRPVVYS 289 (344)
Q Consensus 283 g~~~l~~ 289 (344)
|++++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999863
No 125
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.22 E-value=8.9e-06 Score=73.59 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=57.2
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++-.++++.++|+..|---+.. |+ ..|..+...|..+++.. ++|||.|+||.+++|+.+++.||||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 357788999999999999765432 22 13556678888888777 89999999999999999999999999999998
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
+..
T Consensus 207 iA~ 209 (247)
T PF05690_consen 207 IAK 209 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
No 126
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.20 E-value=3.2e-05 Score=75.42 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHhcC--CcEEEEee--------cCHHH----HHHHHHcCCcEEEEcc--CCCCCCC----Cchh-hHHH
Q 019244 185 SLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIMA 243 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~--~PvivK~v--------~~~~~----a~~~~~~G~d~I~v~~--~gG~~~~----~g~~-~~~~ 243 (344)
.+..+.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|+|.|+. +..+... .... ....
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 445678999999985 56666664 24443 5678899999999974 2222110 1111 2344
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 244 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 244 l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
..++++.+ ++||++.|++++..++.++++.| +|+|++||+++.
T Consensus 268 ~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 268 TAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 56677766 79999999999999999999987 999999999975
No 127
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.20 E-value=2.7e-05 Score=83.36 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCCCC----CCch-hhHHHHH
Q 019244 185 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALE 245 (344)
Q Consensus 185 ~~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~~~----~~g~-~~~~~l~ 245 (344)
.|..+.++.||+.+ +.||.+|+.. +.++ ++.+.++|+|.|.|+.. ++.. ..++ .......
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHH
Confidence 34567899999987 4899999862 2333 57788999999999742 2110 1111 1123345
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 246 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 246 ~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++++.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 666666 79999999999999999999976 999999999985
No 128
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.18 E-value=2.6e-06 Score=78.86 Aligned_cols=94 Identities=28% Similarity=0.275 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCcEEEEee-----cCHHH-----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----c
Q 019244 188 WKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----Q 252 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-----~~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~ 252 (344)
.++|+++++..+-++.+|.+ ++.++ .+.+.++|+|+|..|+.-+ .+..+.+.+.-+++.+ +
T Consensus 118 ~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~~ 193 (257)
T PRK05283 118 FELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGVA 193 (257)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcccC
Confidence 35688888876434777876 44442 3568899999999986321 1224455444444443 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+++.|-++|||||..++.+.+.+|.+.. |.-|+
T Consensus 194 ~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 194 KTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred CCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 5799999999999999999999998753 44443
No 129
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.17 E-value=1.4e-05 Score=74.16 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEccCC--CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-GAd~V~ig~~~ 286 (344)
.+.++.+.+.|++.+.+.+.. |+ ..| +.++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~--~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGT--KNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCC--CCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 355788999999999886633 32 122 3577888888766 7999999999999999999975 99999999999
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
.++
T Consensus 231 ~~~ 233 (253)
T PRK02083 231 HFG 233 (253)
T ss_pred HcC
Confidence 864
No 130
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.16 E-value=2.6e-05 Score=71.61 Aligned_cols=101 Identities=29% Similarity=0.371 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc--------------CCC-CC---CC--C---------
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGA-RQ---LD--Y--------- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~--------------~gG-~~---~~--~--------- 236 (344)
+.+.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.+++.. .|. +- +| .
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 56788888888889998876 4788999999999999988754 122 10 00 0
Q ss_pred ----------------------------chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 237 ----------------------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 237 ----------------------------g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+..+.+.++.+.. .+||+++|||+|.+|+.+++.+||+.|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012234455555543 79999999999999999999999999999999876
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 131
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.16 E-value=4.3e-05 Score=68.60 Aligned_cols=79 Identities=28% Similarity=0.356 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHcCCcEEEEccC--CCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH--GARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.|++++..+.+.|+|+|.++.. +++..... +..++.+.++++.. .++||++.||| +..++.+++++||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 5788999999999999998642 11111111 12367777777665 24999999999 68999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 8764
No 132
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.15 E-value=2.8e-05 Score=72.20 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccHHHHHh---hcCCCCcccccccccccccccccccchhhHHHHhhcCCCC--Cc-
Q 019244 114 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS--LS- 187 (344)
Q Consensus 114 ~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 187 (344)
++.+..+++|+.++.|-.|...|+-...+++. ...+|. +..+. ...+.|-+.......+ +-
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv---------L~KDF----Iid~~QI~eA~~~GADaVLLI 138 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV---------LRKDF----IIDPYQIYEARAAGADAVLLI 138 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E---------EEES-------SHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc---------ccccC----CCCHHHHHHHHHcCCCEeehh
Confidence 44556677888888888887777655555442 222221 00000 1112222222211222 21
Q ss_pred -----HHHHHHHH---HhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 -----WKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 -----~~~i~~i~---~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++++. ...++-++| ++-+.++++++.++|++.|-|-|.--..+ ...+....++...++.++.+|+
T Consensus 139 ~~~L~~~~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRdL~tf---~vd~~~~~~l~~~ip~~~~~is 214 (254)
T PF00218_consen 139 AAILSDDQLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRDLKTF---EVDLNRTEELAPLIPKDVIVIS 214 (254)
T ss_dssp GGGSGHHHHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBCTTTC---CBHTHHHHHHHCHSHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCccccCc---ccChHHHHHHHhhCccceeEEe
Confidence 12334433 344666655 57888999999999999888876432222 2223333455555566788999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.+||.+.+|+.+....|+|+|.||+.+|.+
T Consensus 215 eSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 215 ESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp ESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 999999999999999999999999999864
No 133
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.15 E-value=1e-05 Score=73.91 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++..| |++|++|+.+++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4557888899999887753211111234 5778888888776 69999999999999999999998 999999999987
Q ss_pred H
Q 019244 289 S 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 134
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.12 E-value=1.7e-05 Score=73.86 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~ 286 (344)
.+.++.+.++|++.|.+++. .|+ ...+.++.+.++++.. ++|||++|||++.+|+.+++..| |++|++|+.+
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~---~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGT---KSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccC---CCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 35578899999999999652 121 2235677788888776 79999999999999999999998 9999999998
Q ss_pred HHH
Q 019244 287 VYS 289 (344)
Q Consensus 287 l~~ 289 (344)
+++
T Consensus 233 ~~~ 235 (254)
T TIGR00735 233 HYR 235 (254)
T ss_pred hCC
Confidence 753
No 135
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.09 E-value=3.2e-05 Score=70.87 Aligned_cols=102 Identities=26% Similarity=0.322 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCC-------------CCC---CC----------C---
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-------------ARQ---LD----------Y--- 236 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~g-------------G~~---~~----------~--- 236 (344)
+++.++++.+.+++||++.+ +.+.++++++.+.|++.+++...- |.- +| |
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 56778888888889998875 578999999999999998885310 100 00 1
Q ss_pred -chhhHHHHHH------------------------HHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 237 -VPATIMALEE------------------------VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 237 -g~~~~~~l~~------------------------i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.....+.+.+ +.+.. .++|||++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 1111222221 22221 2699999999999999999999999999999999764
No 136
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.08 E-value=2.1e-05 Score=71.99 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=63.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++-.++++.++|+..|---+.. |+ ..|..+...|.-+++.. ++||+.++||.+++|+.+++.+|||+|++.+.
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 356788999999999999764421 21 13556677777777654 79999999999999999999999999999998
Q ss_pred HHHH
Q 019244 286 VVYS 289 (344)
Q Consensus 286 ~l~~ 289 (344)
+..+
T Consensus 221 IakA 224 (267)
T CHL00162 221 VAQA 224 (267)
T ss_pred eecC
Confidence 8753
No 137
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.05 E-value=5.8e-05 Score=70.80 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 188 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
.+.++++++..+ ...|.=++.+.|+++.+.++|+|.|-++|. +.+.+.++.+..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 346888888775 233444788999999999999999988763 3455555555433 36779999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.+.+.++..+|+|.+.+|+++.
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999999765
No 138
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.04 E-value=4.2e-05 Score=70.52 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+-++.+.++|++.+.+.+-.+- ....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 36688899999998888653211 112345677888888776 69999999999999999999999999999998875
No 139
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.01 E-value=6.1e-05 Score=69.56 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=74.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC--------------CCC------------------C
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--------------GAR------------------Q 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~--------------gG~------------------~ 233 (344)
+++.|++|.+.+ .|+.+.+ +.+.++++.+.++|++.+++.+. |.+ .
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 566788888776 6888766 46788899999999988877531 110 0
Q ss_pred ---C------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc-----C-CC
Q 019244 234 ---L------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 278 (344)
Q Consensus 234 ---~------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal-----G-Ad 278 (344)
. |+ .-+.++.+.++++.. ++|||++|||+|.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 0 01 124566777776664 7999999999999999999987 6 99
Q ss_pred EEEEchHHHHH
Q 019244 279 GIFIGRPVVYS 289 (344)
Q Consensus 279 ~V~ig~~~l~~ 289 (344)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998763
No 140
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.01 E-value=5.6e-05 Score=73.77 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcC--CcEEEEeec---------CH----HHHHHHHHcC-CcEEEEccCCCC---CCCCchh--hHHHHHH
Q 019244 188 WKDVKWLQTITK--LPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYVPA--TIMALEE 246 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~---------~~----~~a~~~~~~G-~d~I~v~~~gG~---~~~~g~~--~~~~l~~ 246 (344)
.+.++.+|+.++ .||.++... +. +.++.+.+.| +|.|.+++.+-. ......+ .......
T Consensus 203 ~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~ 282 (363)
T COG1902 203 LEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAAR 282 (363)
T ss_pred HHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHH
Confidence 467999999995 589999862 22 3367889999 799999863321 1111111 1123334
Q ss_pred HHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 247 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
++... .+|+|++|+|+++..+.+.|+-| ||+|.+||+|+.
T Consensus 283 i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 283 IKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 54444 59999999999999999999998 999999999985
No 141
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.99 E-value=0.00017 Score=70.85 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHhcC--CcEEEEee----------cCHHHH----HHHHHcCCcEEEEccCC----CCCCCC--chhhH
Q 019244 184 RSLSWKDVKWLQTITK--LPILVKGV----------LTAEDA----RIAVQAGAAGIIVSNHG----ARQLDY--VPATI 241 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~--~PvivK~v----------~~~~~a----~~~~~~G~d~I~v~~~g----G~~~~~--g~~~~ 241 (344)
..|..+.++.||+.++ .||.+|.. .+.+++ +.+.+ .+|.+.++... +..... ....+
T Consensus 200 ~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~ 278 (370)
T cd02929 200 ARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQE 278 (370)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccH
Confidence 3456788999999985 56777764 133332 34444 48999987421 000000 01124
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
+...++++.+ ++||+++|||++..++.++|..| ||+|++||+++-
T Consensus 279 ~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 279 PYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 4556666666 79999999999999999999987 999999999984
No 142
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.99 E-value=0.00026 Score=65.39 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=65.3
Q ss_pred cCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCC
Q 019244 198 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 277 (344)
Q Consensus 198 ~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGA 277 (344)
.++-++| ++-+.++++++.++|++.|-|-|..=..+. ..+....++...++.+..+|+.|||.|++|+.+.... |
T Consensus 150 lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~t~~---vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~ 224 (247)
T PRK13957 150 LGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLDTFQ---IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-V 224 (247)
T ss_pred cCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-C
Confidence 4666665 578889999999999998888765322221 2233444556666667889999999999999987776 9
Q ss_pred CEEEEchHHHHH
Q 019244 278 SGIFIGRPVVYS 289 (344)
Q Consensus 278 d~V~ig~~~l~~ 289 (344)
|+|.||+.+|.+
T Consensus 225 davLvG~~lm~~ 236 (247)
T PRK13957 225 DAALIGTYFMEK 236 (247)
T ss_pred CEEEECHHHhCC
Confidence 999999999874
No 143
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.98 E-value=8e-05 Score=69.25 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=62.9
Q ss_pred CH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 209 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 209 ~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++ +.++.+.+.|++.+.+.+.-+- .......++.+.++++.+ ++||+++|||+|.+|+.+++.+||+.|.+|+.++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6688888999999999764221 113346778888888876 7999999999999999999999999999999987
Q ss_pred H
Q 019244 288 Y 288 (344)
Q Consensus 288 ~ 288 (344)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 5
No 144
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.97 E-value=0.00027 Score=63.97 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=101.1
Q ss_pred HHcCCccc--cCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC-cccccccccccccccccccchhh
Q 019244 98 SAAGTIMV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGL 174 (344)
Q Consensus 98 ~~~g~~~~--~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 174 (344)
.+.++.-+ ..+.+...++++.+.++|++.+.+|..+|.--.-.+.++..| |. -++...+ +...........+.
T Consensus 13 ~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTV--l~~~~a~~a~~aGA 88 (212)
T PRK05718 13 RAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTV--LNPEQLAQAIEAGA 88 (212)
T ss_pred HHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeec--cCHHHHHHHHHcCC
Confidence 34444332 456777788888899999999999988875322234444443 31 0111111 00000000011111
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCC
Q 019244 175 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 254 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ 254 (344)
+..++ +.++-+.++.-++ .++|++ -++.|+.++..+.++|++.|+++-.+ .. +|+ ..++.++..++ +
T Consensus 89 ~Fivs----P~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg~---~~lk~l~~p~p-~ 155 (212)
T PRK05718 89 QFIVS----PGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-GGV---KMLKALAGPFP-D 155 (212)
T ss_pred CEEEC----CCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-cCH---HHHHHHhccCC-C
Confidence 12222 2344455666554 577766 46899999999999999999995321 01 123 34444444443 7
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 255 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 255 ~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
++++.+|||. ..++...+.+|+.+++.|+.++
T Consensus 156 ~~~~ptGGV~-~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 156 VRFCPTGGIS-PANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred CeEEEeCCCC-HHHHHHHHhCCCEEEEEChHhC
Confidence 9999999998 5899999999965555555443
No 145
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.96 E-value=4.8e-05 Score=70.66 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.+.|++.|.+.+..... ......++.+.++++.+ ++||+++|||+|.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 466888889999999997643211 12356778888888876 79999999999999999999999999999998875
No 146
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.96 E-value=6.5e-05 Score=67.53 Aligned_cols=90 Identities=29% Similarity=0.368 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhcC-CcEEEEee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITK-LPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.++++.++++..+ +|+.+ + ++.+. ++.+.++|+|+|..+. |-. ....++..+..+++.++.++|
T Consensus 103 ~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~ 176 (203)
T cd00959 103 VYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVG 176 (203)
T ss_pred HHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCce
Confidence 4557888888764 55433 3 45444 5778999999999973 211 122444444444445546899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~i 282 (344)
|.++|||++..++++.+.+||+-++.
T Consensus 177 ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 177 VKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEEeCCCCCHHHHHHHHHhChhhccC
Confidence 99999999999999999999987653
No 147
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.96 E-value=8.3e-05 Score=68.79 Aligned_cols=101 Identities=18% Similarity=0.055 Sum_probs=74.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccC---------------CCC--------------C---
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q--- 233 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~---------------gG~--------------~--- 233 (344)
+.+.|+++.+.+++|+.+.+ +.|.++++.+.+.|++.|++++. |++ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 45678888888889988865 57899999999999999888521 110 0
Q ss_pred --C-----------------------------CC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH---HcCC
Q 019244 234 --L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 277 (344)
Q Consensus 234 --~-----------------------------~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal---alGA 277 (344)
+ |+ .-+..+.+.++++.. ++|||++|||+|.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 00 113445555555543 79999999999999998764 3599
Q ss_pred CEEEEchHHHHH
Q 019244 278 SGIFIGRPVVYS 289 (344)
Q Consensus 278 d~V~ig~~~l~~ 289 (344)
++|.+|++++.+
T Consensus 220 ~gvivg~Al~~g 231 (243)
T TIGR01919 220 SVAIGGKLLYAR 231 (243)
T ss_pred eEEEEhHHHHcC
Confidence 999999998753
No 148
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.96 E-value=0.00038 Score=64.90 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHH---hcCCcEEEEee--cCHHHHHHHHHcCCcEEEE-ccCC--CCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 185 SLSWKDVKWLQT---ITKLPILVKGV--LTAEDARIAVQAGAAGIIV-SNHG--ARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 185 ~~~~~~i~~i~~---~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v-~~~g--G~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
++.++..+++++ ..++..|.=.. .+.+.++...+..-++|.+ +-.| |..........+.+.++++.. ++|
T Consensus 125 DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~p 202 (258)
T PRK13111 125 DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLP 202 (258)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCc
Confidence 444555444443 34655553222 3457788888888888876 3222 221111122334677777754 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
|++.+||++++|+.+++.. ||+|.+|+.++..+.
T Consensus 203 v~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 203 VAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred EEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHH
Confidence 9999999999999998876 999999999988654
No 149
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.95 E-value=0.00015 Score=63.77 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccC--CCCCCC-CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH--GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~--gG~~~~-~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+.+++..+.+.|+|+|.++.. +..... +.+..++.+.++++.. ++||++.|||. ..++.+++.+||+.+.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5788999999999999998642 111111 1344567777776653 79999999995 7899999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9764
No 150
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.92 E-value=0.00055 Score=64.77 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCc-EEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~P-vivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+|+..+.. .|.=++.|.+++..+.++|+|.|-++|. ++..+....+..+....++++.++||| +.+
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ 255 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------PVDLMQQAVQLIRQQNPRVKIEASGNI-TLE 255 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHHHhcCCCeEEEEECCC-CHH
Confidence 4588888876522 2333468899999999999999999863 233333222222222357999999999 599
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++.+.|+|.+.+|+++..
T Consensus 256 ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 256 TIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred HHHHHHHcCCCEEEEchhhhC
Confidence 999999999999999997753
No 151
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.91 E-value=7.3e-05 Score=73.02 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecC----HHHHHHHHHcCCcEEEEccCCCCCCC-CchhhHHHHHHHHHHccCCCcEEEe
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~----~~~a~~~~~~G~d~I~v~~~gG~~~~-~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+..+.++++++. .|.+|...+ .+.++.+.++|+|.|++.+.--.+.. .+...+..+.++.+.+ ++|||+
T Consensus 120 l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~- 193 (369)
T TIGR01304 120 LLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA- 193 (369)
T ss_pred HHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-
Confidence 334567778775 277777644 36688999999999999642111111 1112344566666655 799998
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEch
Q 019244 261 GGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
|++.+..|+.+++.+|||+|++|+
T Consensus 194 G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 194 GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999775
No 152
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.90 E-value=0.0016 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=56.7
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc-CCCC-CCCCchhhHHHHHHHHHHcc---CCCcEEEecCC
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 263 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~---~~~~via~GGI 263 (344)
++++|+. ++-..+-.- .+.+..+..++ =+|.|.+=+ .+|. ...+-+..++-+.++++... .+++|.++|||
T Consensus 99 l~~ik~~-g~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI 176 (220)
T PRK08883 99 LQLIKEH-GCQAGVVLNPATPLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV 176 (220)
T ss_pred HHHHHHc-CCcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC
Confidence 5566654 433322221 23344554444 356555422 1111 11233445566666665542 14899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
. .+.+.+....|||.+.+|+.++.
T Consensus 177 ~-~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 177 K-VDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred C-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 9 88999999999999999998753
No 153
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.88 E-value=0.00074 Score=63.49 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCC
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 264 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr 264 (344)
.+.++.+|+..+-..+.-.+.+.+++..+.++|+|+|.+++-. +..+ .++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~l---~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEEL---AELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHHH---HHHHHHHhccCCCceEEEECCC-
Confidence 3467788876532223334578999999999999999987531 2222 23332221 36999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 019244 265 RGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~ 286 (344)
+..++.++.+.|+|.+.++..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 7899999999999999776653
No 154
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.87 E-value=0.00025 Score=68.84 Aligned_cols=101 Identities=26% Similarity=0.330 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHhc--CCcEEEEeec--------CHHH----HHHHHHcCCcEEEEccCCCC------C-CC--Cch-hhH
Q 019244 186 LSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGAR------Q-LD--YVP-ATI 241 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~PvivK~v~--------~~~~----a~~~~~~G~d~I~v~~~gG~------~-~~--~g~-~~~ 241 (344)
|..+.|+.||+.+ +.||.+|... +.++ ++.+.++|+|.+.++..... . .. ... ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 3567899999988 4789999862 1222 57788999999877632211 0 01 111 123
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.....+++.+ ++|||+.|||++...+.++++.| ||+|++||+++.
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 4455666666 79999999999999999999988 999999999985
No 155
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.84 E-value=0.00094 Score=62.85 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=65.2
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ .+|. -.+-|.+++..+.++|+|+|-+++. +.+.+.++.+..++++|+.++|||. .+.
T Consensus 179 av~~~r~~~~~~~I~-VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGIt-~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVE-VEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGIN-EST 246 (277)
T ss_pred HHHHHHHhCCCCeEE-EEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCCC-HHH
Confidence 4667776543 3333 3457899999999999999988643 2345555555554589999999994 899
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++.+.|+|.+.+|.+..
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998664
No 156
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.83 E-value=0.00098 Score=62.72 Aligned_cols=149 Identities=21% Similarity=0.190 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCcEEEeccCCccccccHH---HHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCc
Q 019244 111 VVAQLVRRAERAGFKAIALTVDTPRLGRREA---DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 187 (344)
Q Consensus 111 ~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (344)
.+.++++.+++.+.+..++...-...|.|.- ..+.|-+.|..++....-.+. .|.... .. .
T Consensus 106 ~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLik--------dnHi~~-~~-------i 169 (278)
T PRK08385 106 ETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIK--------DNHLAL-VP-------L 169 (278)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEc--------cCHHHH-HH-------H
Confidence 3456777777778887666665556666643 333333334433321111111 111110 00 1
Q ss_pred HHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEEec
Q 019244 188 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via~G 261 (344)
-+.++.+|+..+ .+ |.=++.+.++++.+.++|+|.|.++|. .+ +.+.++.+.+ ++++.+.++|
T Consensus 170 ~~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~-------~~---e~l~~~v~~l~~~~~~~~~~leaSG 238 (278)
T PRK08385 170 EEAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNM-------TP---EEIREVIEALKREGLRERVKIEVSG 238 (278)
T ss_pred HHHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCC-------CH---HHHHHHHHHHHhcCcCCCEEEEEEC
Confidence 235778887653 45 334678999999999999999999874 13 3333333322 2478899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
|| +...+.++.+.|+|.+.+|.+..
T Consensus 239 GI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 239 GI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99 79999999999999999998764
No 157
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.82 E-value=0.00029 Score=63.17 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCcEEEEee--cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++++++ .++++++-.. .+ .++++.+.+.|+|.|.+.. |......++..+..+.++++..+ ..++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 5889887542 22 4788889999999998852 21111233445566666666553 4677779999 78
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++..||+.+.+||.++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8899999999999999999764
No 158
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.81 E-value=0.0016 Score=58.25 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHH
Q 019244 199 KLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKA 272 (344)
Q Consensus 199 ~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~ka 272 (344)
++.+++-.. .+..+..+....++|.+.+... |++...+.+...+.+.++++..+ ..+|++++|||+ .+++.++
T Consensus 104 g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l 182 (210)
T TIGR01163 104 GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNAREL 182 (210)
T ss_pred CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHH
Confidence 544443222 2344444455667899876432 22222233444555666655442 237899999996 7999999
Q ss_pred HHcCCCEEEEchHHHH
Q 019244 273 LALGASGIFIGRPVVY 288 (344)
Q Consensus 273 lalGAd~V~ig~~~l~ 288 (344)
+..|||.+.+|++++.
T Consensus 183 ~~~gad~iivgsai~~ 198 (210)
T TIGR01163 183 AEAGADILVAGSAIFG 198 (210)
T ss_pred HHcCCCEEEEChHHhC
Confidence 9999999999999874
No 159
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.80 E-value=0.00012 Score=73.44 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=65.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
+-+.++++++.++|++.|-|-|..=..+ ...+....++...++.++.+++-+||.|.+|+.++ ..|||+|.||+.+
T Consensus 166 vh~~~El~~al~~~a~iiGiNnRdL~t~---~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~l 241 (454)
T PRK09427 166 VSNEEELERAIALGAKVIGINNRNLRDL---SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSL 241 (454)
T ss_pred ECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHH
Confidence 3444555555555555444433221111 11233344455566667889999999999999875 4589999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 325 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~ 325 (344)
|.+ +.....++.+. ......||.++.+|.+
T Consensus 242 m~~------~d~~~~~~~L~---~~~vKICGit~~eda~ 271 (454)
T PRK09427 242 MAE------DDLELAVRKLI---LGENKVCGLTRPQDAK 271 (454)
T ss_pred cCC------CCHHHHHHHHh---ccccccCCCCCHHHHH
Confidence 974 12223333332 2345779999988886
No 160
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.79 E-value=0.00024 Score=64.91 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..--|. .....+.++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35578888999999998763221 112346778888888776 69999999999999999999999999999998875
No 161
>PLN02591 tryptophan synthase
Probab=97.79 E-value=0.0013 Score=61.10 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCCcHHHHHHHHHh---cCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCC-CCCCCc-hhh-HHHHHHHHHHccCCC
Q 019244 184 RSLSWKDVKWLQTI---TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV-PAT-IMALEEVVKATQGRI 255 (344)
Q Consensus 184 ~~~~~~~i~~i~~~---~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG-~~~~~g-~~~-~~~l~~i~~~~~~~~ 255 (344)
+++.+++.+++++. .++..|.=.. .+.+..+...+..-.+|.+-+.-| +....+ +.. .+.+..+++.. ++
T Consensus 113 pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~ 190 (250)
T PLN02591 113 PDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DK 190 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CC
Confidence 35556655555543 3666554322 334567777777777887643222 111111 223 34466676643 89
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
||+.--||++++|+.+++..|||+|.+|+.++.-+.
T Consensus 191 Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~ 226 (250)
T PLN02591 191 PVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALG 226 (250)
T ss_pred ceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhh
Confidence 999988999999999999999999999999987553
No 162
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.77 E-value=0.00037 Score=65.35 Aligned_cols=87 Identities=26% Similarity=0.387 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEe---------ecCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 191 VKWLQTITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 191 i~~i~~~~~~PvivK~---------v~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
+.++...+++|+++-. ..+.+. ++.+.+.|+|+|..+-.| ..+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCE
Confidence 3334445689987731 123333 577889999999986321 346666666543 7999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEchHHHH
Q 019244 258 FLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 288 (344)
Q Consensus 258 ia~GGIr--~g~dv~kal----alGAd~V~ig~~~l~ 288 (344)
+++|||+ |..++++.+ .+||+.+.+|+.++.
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9999999 777766664 899999999999875
No 163
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.76 E-value=0.00037 Score=62.12 Aligned_cols=94 Identities=20% Similarity=0.142 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCcEEE--EeecCHHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~Pviv--K~v~~~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++.+++ .++++++ =...|++++..+...|+|.+.+.- ..+... +.....+.+.++.+. .++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 3555554 4777775 345788888889999999998841 111111 123455666666654 379999999996 9
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
+++.+++..|||.+.+||+++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcC
Confidence 9999999999999999999763
No 164
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.75 E-value=0.00014 Score=71.12 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGI 263 (344)
..+.++.+++. ++++.++.. ...+.++.+.++|+|.|+++++--.+...+.. .+..+.++.+.. ++|||+ |+|
T Consensus 120 ~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V 195 (368)
T PRK08649 120 ITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGC 195 (368)
T ss_pred HHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCC
Confidence 34567778775 555555442 23477899999999999995421111111111 234455555544 699999 999
Q ss_pred CCHHHHHHHHHcCCCEEEEch
Q 019244 264 RRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~ 284 (344)
.|.+++.+++.+|||+|++|+
T Consensus 196 ~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 196 VTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999995
No 165
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.74 E-value=0.00046 Score=63.21 Aligned_cols=88 Identities=25% Similarity=0.434 Sum_probs=63.4
Q ss_pred HHHHHH---HhcCCcEEEEee---------cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC
Q 019244 190 DVKWLQ---TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 190 ~i~~i~---~~~~~PvivK~v---------~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
.+++++ ..+++|+++=.- .+.+. ++.+.++|+|+|.++..+ .++.+.++.+..
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~-- 178 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC-- 178 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--
Confidence 455544 456899887221 12333 455889999999996432 356677777655
Q ss_pred CCcEEEecCC--CCHHH----HHHHHHcCCCEEEEchHHHH
Q 019244 254 RIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 254 ~~~via~GGI--r~g~d----v~kalalGAd~V~ig~~~l~ 288 (344)
++||+++||+ .+..| +..++.+||+.|.+||.++.
T Consensus 179 ~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 179 PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 6899999998 66666 77788999999999999985
No 166
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0073 Score=56.20 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=78.3
Q ss_pred cHHHHHHHHHh-cCCcEEEEeecCH------HH-HHHHHHcCCcEEEEcc---------------CCC---------CC-
Q 019244 187 SWKDVKWLQTI-TKLPILVKGVLTA------ED-ARIAVQAGAAGIIVSN---------------HGA---------RQ- 233 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~v~~~------~~-a~~~~~~G~d~I~v~~---------------~gG---------~~- 233 (344)
.++.++.+|+. .++|+++=.-.++ +. .+.+.++|+|++.+-. ||= +.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 56788888865 5788876443222 33 6788899999888831 100 00
Q ss_pred ------------------CC--Cch------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 234 ------------------LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 234 ------------------~~--~g~------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.. .|. ...+.+..+++.. ++||..-=||++++++.+.... ||+|.+|+++.
T Consensus 161 ~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 161 ERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 00 111 1234455555544 8999998899999999999999 99999999999
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREEFELA 312 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~el~~~ 312 (344)
.-+.....+...+-+..+.++|+..
T Consensus 238 ~~i~~~~~~~~~~~~~~l~~~l~~~ 262 (265)
T COG0159 238 KIIEEGLDEEALEELRALVKELKAA 262 (265)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHH
Confidence 8765322111223344555555543
No 167
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.72 E-value=0.00062 Score=62.08 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=66.2
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCC-CCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+--.++... .+.+++..+.+.|+|+|.++----+ ..+.-+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 44555544322345432 4678888899999999998643111 1111122355666666655 7999999999 799
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+++..||+.|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999875
No 168
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.0003 Score=63.50 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.++-.++++.++|+.+|-=-+.. |+ ..|+-+.+.|.-+.+.. ++|||.|-||.+++|++.++.||+|+|.+-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 45677999999999988532211 21 13556777888787766 899999999999999999999999999999987
Q ss_pred HH
Q 019244 287 VY 288 (344)
Q Consensus 287 l~ 288 (344)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 54
No 169
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.69 E-value=0.00023 Score=64.96 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.+.+.|+|.+.|..--+. ........+.+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46688888999999999743211 112344677888887776 69999999999999999999999999999998764
No 170
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.69 E-value=0.00032 Score=73.69 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+....++...++.++.+|+.+||.+..|+.++..+|||+|.||+.+|.+
T Consensus 198 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 198 VNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 3344455556666788999999999999999999999999999998763
No 171
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.69 E-value=0.00018 Score=65.52 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
...+.+.|+ .+.+.. .-|+ ...+.++.+.++.+.. ++|||++|||+|.+|+.++..+||++|.+|++++++
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 344556787 555432 1122 1235678888888765 799999999999999999988999999999998753
No 172
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.68 E-value=0.0012 Score=67.14 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|+|.|+|++.-|+ ....++.+.++++..+.+++ +..|-|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999764332 12346778888776643344 44588999999999999999998774
No 173
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.68 E-value=0.018 Score=54.45 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=75.0
Q ss_pred ecCHHHHHHHHH-cCCcEEEEc--c-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 019244 207 VLTAEDARIAVQ-AGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 280 (344)
Q Consensus 207 v~~~~~a~~~~~-~G~d~I~v~--~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~V 280 (344)
..++++++.+.+ .|+|++-++ + ||-. .+.-.-.++.|.++++.+ ++|+++-| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 368999999874 599999994 3 4422 111123578899998877 79999999 887 788999999999999
Q ss_pred EEchHHHHHhhh-------cCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G~-----~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+.+.+..+... ... +-.....+.+++..+..|..+|+.
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988764211 000 112233345566666677776653
No 174
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.67 E-value=0.00078 Score=59.80 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+-+.+++..+.+.|+|+|.++.-.-+.... .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.++
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAVV 180 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEh
Confidence 467888889999999999986532221111 1124566776665442 5999999999 5899999999999999999
Q ss_pred hHHHH
Q 019244 284 RPVVY 288 (344)
Q Consensus 284 ~~~l~ 288 (344)
+.++.
T Consensus 181 ~~i~~ 185 (196)
T TIGR00693 181 SAIMQ 185 (196)
T ss_pred HHhhC
Confidence 99874
No 175
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.67 E-value=0.00071 Score=63.35 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=66.3
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ ...+.-.+-|.++++.+.++|+|+|-+++. ..+.+.++.+.++.++|+.++|||. .++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HHH
Confidence 4888888774 223434568999999999999999988653 2255666665554469999999995 899
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+....+.|||.+.+|...
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999996544
No 176
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.66 E-value=0.00098 Score=61.00 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCcEEEEeec-C-HHHHHHHHHcC-CcEEEEcc-CCCC-CCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~-~~~a~~~~~~G-~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+.++++++. ++-+.+-... | .+.++...+.| +|.|.+.. +.|. ...+.+..++.+.++++.. .++||.++|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 456666653 4322222211 3 44455555664 99996643 2222 1224455666777776653 35799999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 313 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~m 313 (344)
+.+++.+.+++|||.+.+|++++.+ +.....++.++++++..|
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 5899999999999999999997632 223455666666666654
No 177
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.65 E-value=0.0025 Score=58.94 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+.......++-++| ++-+.++++++.++|++-|-|-|..=+.+.. .++...++...++.+.-+|.-+||.+..|+
T Consensus 147 el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~v---dl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 147 ELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLEV---DLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhee---cHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Confidence 344444445777665 5789999999999999999887754333322 233445555666667889999999999999
Q ss_pred HHHHHcCCCEEEEchHHHHH
Q 019244 270 FKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~l~~ 289 (344)
.+....||+++.||+.+|..
T Consensus 223 ~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 223 RRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHcCCCEEEecHHHhcC
Confidence 99999999999999999874
No 178
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.64 E-value=0.00053 Score=68.62 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCcEEEEee--cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
.++.+++ .++++++... .+ .+.++.+.+.|+|+|.+. .|......++...+.++++++.. ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 3555555 5788776422 23 466788899999999775 22211112233456777776654 5999999999 58
Q ss_pred HHHHHHHHcCCCEEEEchHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~ 288 (344)
.++.++++.||+.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999864
No 179
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.63 E-value=0.003 Score=59.53 Aligned_cols=88 Identities=25% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCcEEE-EeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~Pviv-K~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+|+..+-..++ =.+.+.++++.+.+.|+|+|-+++ . ..+.+.++.+..+.++|+.++||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-------~---~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-------R---TPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888877522222 234789999999999999998853 2 235566666655446889999999 599
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
++....+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998764
No 180
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.62 E-value=0.00033 Score=66.69 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=60.3
Q ss_pred ecCHHHHHHHHHcCCcEEEEccC-CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~-gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
..++..++++.++|+-+|---+. =|+ ..|....+.+..+.+.. ++||+.++||.+++|+.+|+.||||+|.+.+.
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 47899999999999955543111 011 12345667777777664 79999999999999999999999999999998
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
+..
T Consensus 281 Ia~ 283 (326)
T PRK11840 281 IAE 283 (326)
T ss_pred ecc
Confidence 864
No 181
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.62 E-value=0.00067 Score=66.38 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcC-CcEEEEee-----------cCHHH-----HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHH
Q 019244 188 WKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVK 249 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v-----------~~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~ 249 (344)
.+.|+.||+.++ -+|.+|.. .+.++ ++.+.+.|+|+|.|+.... ....+ .......+++
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~---~~~~~~~~~~~~~ik~ 289 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW---AGGEPYSDAFREKVRA 289 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc---cCCccccHHHHHHHHH
Confidence 467999999884 25788763 23343 5677889999999985211 11111 2233355666
Q ss_pred HccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 250 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 250 ~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
.+ ++||++.|++ ++..+.++|+-| ||+|++||+++.
T Consensus 290 ~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 290 RF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 65 6899999996 899999999998 999999999985
No 182
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.62 E-value=0.0005 Score=63.46 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+..--+. .......+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 36688888999998887542111 12245678888888877 69999999999999999999999999999998875
No 183
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.61 E-value=0.001 Score=64.55 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=67.3
Q ss_pred HHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+--.++.. +-+++++..+.+.|+|+|.++-...+. .+..+..++.+..+.+.. ++|+++-|||. ..
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 3445554432223333 367899999999999999987533221 111233456677666554 79999999995 89
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
++.+.+++||+.|.+++.++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999874
No 184
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.61 E-value=0.00072 Score=63.43 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=68.2
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+|+..+ -..|.=.+-+.++++.+.++|+|+|-+++. ..+.+.++.+..+.++|+.++|||. ...
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HHH
Confidence 5788888764 223333467899999999999999998753 2466667666554479999999995 899
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++.+.|+|.+.++++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
No 185
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.61 E-value=0.0081 Score=55.02 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=41.6
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHH
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
+-+.++++.. ....|.++|||+ .+.+.++...|||.+.+||+++.+ +...+.++.++++++.
T Consensus 162 ~ki~~~~~~~-~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a------~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 162 PKVRELRKRY-PHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA------KDRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHhc-ccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC------CCHHHHHHHHHHHHHH
Confidence 3344444433 257899999999 467888899999999999996531 1233455566655554
No 186
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.53 E-value=0.0013 Score=61.82 Aligned_cols=86 Identities=28% Similarity=0.298 Sum_probs=65.0
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC--CCcEEEecCCCCH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~--~~~via~GGIr~g 266 (344)
.++.+|+..+ ...+.-.+.|.+++..+.++|+|.|-+++.. + +.+.++.+.++. ++||.++|||. .
T Consensus 170 ~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~-------~---e~l~~~v~~i~~~~~i~i~asGGIt-~ 238 (269)
T cd01568 170 AVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS-------P---EELKEAVKLLKGLPRVLLEASGGIT-L 238 (269)
T ss_pred HHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHhccCCCeEEEEECCCC-H
Confidence 5888888774 2234345689999999999999999997632 2 344444444333 78999999997 8
Q ss_pred HHHHHHHHcCCCEEEEchHH
Q 019244 267 TDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~ 286 (344)
..+.++.+.|||.+.+|..+
T Consensus 239 ~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 239 ENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHcCCCEEEEcHHH
Confidence 99999999999999997654
No 187
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.51 E-value=0.028 Score=53.12 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=76.6
Q ss_pred cCHHHHHHHHH-cCCcEEEEc-c--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 019244 208 LTAEDARIAVQ-AGAAGIIVS-N--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 281 (344)
Q Consensus 208 ~~~~~a~~~~~-~G~d~I~v~-~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~V~ 281 (344)
.++++++.+.+ .|+|++.++ | ||-. .....-.++.|.++++.+ ++|+.+=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~-~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKY-KGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc-CCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 58999999986 999999975 2 3321 111223467888988877 69999999 987 6889999999999999
Q ss_pred EchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 282 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 282 ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
+++-+..+... .. ..-.....+.+.+.++..|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987654221 00 1123344556777777888887754
No 188
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.51 E-value=0.0007 Score=62.98 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc----C-----------------------------CC--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN----H-----------------------------GA-- 231 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~----~-----------------------------gG-- 231 (344)
+++.|++|++ +++||-+.+-...++++.+.++||+.|++.+ . .|
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 4667888888 7788888776445888888888888888852 0 11
Q ss_pred C-------C---------------------------CCC--chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc
Q 019244 232 R-------Q---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 275 (344)
Q Consensus 232 ~-------~---------------------------~~~--g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal 275 (344)
. . .|+ ..+.++.+.++.+.. ++|||++|||+|.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 0 0 011 123455666666654 7999999999999999999988
Q ss_pred C--CCEEEEchHHH
Q 019244 276 G--ASGIFIGRPVV 287 (344)
Q Consensus 276 G--Ad~V~ig~~~l 287 (344)
| ...|.+|++++
T Consensus 229 g~g~~gvIvGkAl~ 242 (262)
T PLN02446 229 GGGRVDVTVGSALD 242 (262)
T ss_pred CCCCEEEEEEeeHH
Confidence 5 68899999983
No 189
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.50 E-value=0.0049 Score=58.26 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|.| ++.|.++++.+.++|+|.|-++|. +.+.+.++.+.+++++.+.++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 45888888764 34443 568999999999999999999874 3345555555555688999999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+.+..+...|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998664
No 190
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.49 E-value=0.0027 Score=57.36 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...++..+-..++... -+.+++..+.+.|+|+|.++.-..+.- +.-+..++.+.++.+.. .+|+++-|||. ..
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 44455545444455543 578999999999999999865444432 22233466777776655 59999999997 89
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+...+..||+.|.+-|.++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999886
No 191
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.48 E-value=0.00093 Score=68.50 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHHHHH
Q 019244 241 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 289 (344)
Q Consensus 241 ~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~l~~ 289 (344)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|.+.
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 44455555554 799999999999999999997 679999999988773
No 192
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.48 E-value=0.0027 Score=56.89 Aligned_cols=99 Identities=27% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCcHHHH----HHHHHhc-CCcEEEEee--cCH----HHHHHHHHcCCcEEEEccCCCCCC-----------CCchhhHH
Q 019244 185 SLSWKDV----KWLQTIT-KLPILVKGV--LTA----EDARIAVQAGAAGIIVSNHGARQL-----------DYVPATIM 242 (344)
Q Consensus 185 ~~~~~~i----~~i~~~~-~~PvivK~v--~~~----~~a~~~~~~G~d~I~v~~~gG~~~-----------~~g~~~~~ 242 (344)
.|..++| ++.|+.. ++|+.|-.- +.. +-|..+.++|+|.|.. -||+.- ...-||+.
T Consensus 99 ~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLA 176 (242)
T PF04481_consen 99 RFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLA 176 (242)
T ss_pred eecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHH
Confidence 4444444 4444444 466665432 322 4488999999999866 444321 12346777
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 243 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+..+|.+.+ ++||+..+|+..-. +=-|+++||.+|++|+.+-.
T Consensus 177 aay~ISr~v--~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 177 AAYAISRAV--SIPVLCASGLSAVT-APMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred HHHHHHhcc--CCceEeccCcchhh-HHHHHHcCCcccchhHHhhh
Confidence 777777776 89999999998544 45689999999999998743
No 193
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.47 E-value=0.0026 Score=57.58 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+-.+.|.+++..+.++|+++| +-+-||-.++|...+..+.++.+.... +..|++ .|+|+
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 456666665 89999999999999999999999995 445566555666666666666655421 344444 56999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
..++..++.+||+.|-+.-.++..+..
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 168 PQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999999887654
No 194
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.46 E-value=0.0015 Score=60.81 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=59.6
Q ss_pred HHHHhcCCcEEEEee--------cCH---HH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 193 WLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 193 ~i~~~~~~PvivK~v--------~~~---~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
++...+++|+++... .+. .. ++.+.++|+|+|.++.. ..++.+.++.+.. ++||.+.
T Consensus 130 ~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~ 198 (258)
T TIGR01949 130 EICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVA 198 (258)
T ss_pred HHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEe
Confidence 333446899888432 122 22 46778999999998622 2456677776644 7999999
Q ss_pred cCCC--CHHHH----HHHHHcCCCEEEEchHHHH
Q 019244 261 GGVR--RGTDV----FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr--~g~dv----~kalalGAd~V~ig~~~l~ 288 (344)
|||+ +..++ ..++.+||+.+.+|+.++.
T Consensus 199 GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 199 GGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9999 54444 4555899999999998875
No 195
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.46 E-value=0.00092 Score=61.39 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=62.2
Q ss_pred HHHHHHHHh---cCCcEEEEeecCHHH-------------HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc
Q 019244 189 KDVKWLQTI---TKLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 252 (344)
Q Consensus 189 ~~i~~i~~~---~~~PvivK~v~~~~~-------------a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~ 252 (344)
+.++.+++. +++|+|+=..++.++ ++.+.++|+|+|.++..+. ..........+.++.+..
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~- 188 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA- 188 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc-
Confidence 345555554 468888774444333 4678899999999985411 112233444555554433
Q ss_pred CCCc----EEEecCC------CCHHHHHHHHHcCC--CEEEEchHHH
Q 019244 253 GRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 287 (344)
Q Consensus 253 ~~~~----via~GGI------r~g~dv~kalalGA--d~V~ig~~~l 287 (344)
.+| |.++||| ++..++.+++.+|| ..+..||.++
T Consensus 189 -~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 -PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp -SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred -CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 455 9999999 99999999999999 6666666553
No 196
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.45 E-value=0.018 Score=52.53 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCcEEEEe--ecCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecC
Q 019244 190 DVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 262 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~--v~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GG 262 (344)
.++++|+. ++-..+-. -.+.+..+..++ =+|.|.+=+ -|.....+-+.+++-+.++++... .++.|-+|||
T Consensus 102 ~l~~Ir~~-g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG 179 (223)
T PRK08745 102 TIQLIKSH-GCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179 (223)
T ss_pred HHHHHHHC-CCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECC
Confidence 35666664 43332222 133455555544 466665532 121112233455555665555432 2477999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l 287 (344)
|. .+.+.+..+.|||.+.+||.++
T Consensus 180 I~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 180 VK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred CC-HHHHHHHHHcCCCEEEEChhhh
Confidence 98 6777788899999999999854
No 197
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.42 E-value=0.011 Score=55.06 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 242 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 242 ~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
+.+..+++.. ++||.+-=||++++|+.+.. .|||+|.+|++++.-+...+
T Consensus 188 ~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 188 EFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 4566666554 79999988999999998777 99999999999998765434
No 198
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.41 E-value=0.0021 Score=59.58 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC-------------------CCCC-------C---C--
Q 019244 187 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-------------------GARQ-------L---D-- 235 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~-------------------gG~~-------~---~-- 235 (344)
+.+.|++|.+.+++||.+.+-...++++.+.++||+.+++++. |+-. . +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 6788999999899999988865569999999999999998641 1100 0 0
Q ss_pred -------C----ch------------------------------hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 236 -------Y----VP------------------------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 236 -------~----g~------------------------------~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
| +. +.++.+.++.+.. ++|||++||++|.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 1 11 1223333333333 799999999999999998855
Q ss_pred c--CCCEEEEchHHHH
Q 019244 275 L--GASGIFIGRPVVY 288 (344)
Q Consensus 275 l--GAd~V~ig~~~l~ 288 (344)
+ |...+.+|++++.
T Consensus 222 ~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKGKVDLTIGSALDI 237 (253)
T ss_pred hcCCCCcEEeeehHHH
Confidence 5 5555778887653
No 199
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.40 E-value=0.0058 Score=55.40 Aligned_cols=113 Identities=26% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+=.+.|.+++..+.++|+++|-. .-||-.++|.+.+..+.++.+.. +.+..|++. .+|+
T Consensus 92 ~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaA-S~r~ 167 (213)
T TIGR00875 92 KAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAA-SVRH 167 (213)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEe-ccCC
Confidence 345555543 8999888899999999999999998865 44565555556666666665544 336776665 4999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.++..+|+|.|-+.-.++..+..+. ..+++.+-+.|
T Consensus 168 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~ 209 (213)
T TIGR00875 168 PRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDW 209 (213)
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999999988765322 23454444443
No 200
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.39 E-value=0.0037 Score=56.99 Aligned_cols=96 Identities=27% Similarity=0.343 Sum_probs=63.2
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--CCC--CCCC-chhhHH-HHHHHHHHccCCCcEEEecCCC
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR--QLDY-VPATIM-ALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--gG~--~~~~-g~~~~~-~l~~i~~~~~~~~~via~GGIr 264 (344)
++..++ .++.+++ .+.+.++++.+.+.|.++|.+-.. -|+ ..+. .+..+. .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 333333 3655553 456778888899999998876432 122 1111 122222 22333332 2368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+.+++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999999863
No 201
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.39 E-value=0.002 Score=56.54 Aligned_cols=92 Identities=28% Similarity=0.282 Sum_probs=67.4
Q ss_pred HHHHHHHHHh--cCCcEEEEeec----CHHHHH----HHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 188 WKDVKWLQTI--TKLPILVKGVL----TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 188 ~~~i~~i~~~--~~~PvivK~v~----~~~~a~----~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
.+.++.+++. .++|++++... +++... .+.+.|+++|+.+.... .+...+..+.++.+..+.++++
T Consensus 100 ~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 100 LEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcE
Confidence 4567788887 48999999862 454433 35689999999875211 1123455666666665446899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig 283 (344)
++.||+.+..++..++.+||+.+.+|
T Consensus 176 ~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 176 KAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEECCCCCHHHHHHHHHhccceeecC
Confidence 99999999999999999999999865
No 202
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.36 E-value=0.0072 Score=57.07 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=64.3
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr 264 (344)
+.++.+|+..+ .+ |.=++.+.++++.+.++|+|.|.++|. .+.. +.++.+.+ ..++.+-++|||.
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~-------~~e~---l~~av~~~~~~~~~~~leaSGGI~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKF-------SPQQ---ATEIAQIAPSLAPHCTLSLAGGIN 246 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHhhccCCCeEEEEECCCC
Confidence 45888888764 34 444678999999999999999999763 2333 33333333 3578899999997
Q ss_pred CHHHHHHHHHcCCCEEEEchH
Q 019244 265 RGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~ 285 (344)
.+.+.++-.+|+|.+.+|.+
T Consensus 247 -~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 -LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred -HHHHHHHHhcCCCEEEECcc
Confidence 88888888899999988876
No 203
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.34 E-value=0.0032 Score=55.00 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+ .+-|.=++.+.++++.++++|+|.|.++|. .+..+..+.+..+....++.|.++|||. ..
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI~-~~ 139 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGIT-LE 139 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSSS-TT
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCCC-HH
Confidence 35788888764 332444678999999999999999999874 2333332222223445579999999997 78
Q ss_pred HHHHHHHcCCCEEEEchHHHH
Q 019244 268 DVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...|+|.+.+|+....
T Consensus 140 ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 140 NIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp THHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHhcCCCEEEcChhhcC
Confidence 899999999999999987653
No 204
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.34 E-value=0.0076 Score=57.10 Aligned_cols=87 Identities=24% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+ .|+ .=++-|.++++.+.++|+|.|-++|. +.+.+.++.+..++++.+.++|||. ..
T Consensus 197 ~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 45777777653 554 44678999999999999999999873 2355555555555688999999997 78
Q ss_pred HHHHHHHcCCCEEEEchHHH
Q 019244 268 DVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l 287 (344)
.+.++-.+|+|.+.+|.+..
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998653
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.33 E-value=0.0016 Score=58.65 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+++++.+ ++.|.+..|++.++++.+.++|+++|+ |-+ .+.+.+..+.+ .++|.+- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~---------~~~~v~~~~~~---~~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPG---------LTPELAKHAQD---HGIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHHH---cCCcEEC--CCCC
Confidence 346799999887 477888888999999999999999994 321 12233333322 2577766 9999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999744
No 206
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.33 E-value=0.009 Score=56.54 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=65.4
Q ss_pred HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 190 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 190 ~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
.++.+++... .+|. =++-|.++++.+.++|+|.|-++|. +.+.+.++.+.+++++.+-+||||. ...
T Consensus 195 av~~~r~~~~~~kIe-VEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQ-IEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FDT 262 (294)
T ss_pred HHHHHHHhCCCCcEE-EEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HHH
Confidence 4666666442 3433 3568999999999999999999874 2344555555555678899999997 788
Q ss_pred HHHHHHcCCCEEEEchHHH
Q 019244 269 VFKALALGASGIFIGRPVV 287 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l 287 (344)
+.++-..|+|.+.+|.+..
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 8888889999999998654
No 207
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.32 E-value=0.0092 Score=56.17 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr 264 (344)
+.++.+|+..+ .+|. =++.+.++++.+.++|+|.|.++|. .+.. +.++.+.+ ..++.|.++|||.
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~-------~~e~---l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF-------TPQQ---LHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC-------CHHH---HHHHHHHHhccCCCEEEEEECCCC
Confidence 45888887653 4433 3568999999999999999999763 1223 33333333 3578899999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHH
Q 019244 265 RGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~ 286 (344)
...+.++..+|+|.+.+|.++
T Consensus 246 -~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 246 -PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -HHHHHHHHhcCCCEEEeCcce
Confidence 889999999999999999863
No 208
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.31 E-value=0.0012 Score=60.57 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...+. ++.+.+-.--|. ..+.++..+.+.++.+.. .+||+++|||||-+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 445666666 887766432121 112245778888887765 7999999999999999999999999999999865
No 209
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.03 Score=50.67 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHH
Q 019244 237 VPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 309 (344)
Q Consensus 237 g~~~~~~l~~i~~~~~~--~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el 309 (344)
-+..++-++++++.... ++-|-+||||. .+.+-++.++|||.+..||.++. + ......++.++.++
T Consensus 150 i~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~-----~-~d~~~~i~~~~~~~ 217 (220)
T COG0036 150 IPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFG-----A-DDYKATIRELRGEL 217 (220)
T ss_pred CHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeC-----C-ccHHHHHHHHHHHh
Confidence 45566777777766542 56788999998 56666677799999999995442 1 22344555555444
No 210
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.28 E-value=0.0035 Score=57.17 Aligned_cols=76 Identities=30% Similarity=0.433 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.-.+. ........+.+.++++.. .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 35678888999999988643221 112234667788887766 69999999999999999999999999999987764
No 211
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.28 E-value=0.0018 Score=59.15 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..-.+- ........+.+.++++.. ++||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~-~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDAS-KRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCc-ccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 35578888999998877543221 112245677788888766 69999999999999999999999999999998764
No 212
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.27 E-value=0.0015 Score=60.06 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.++.+.+.|++.+.+-...+. ..........+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 36688899999999988543211 112234566777777765 6999999999999999999999999999999775
No 213
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.27 E-value=0.013 Score=55.44 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=65.7
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH---ccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~~~~~via~GGIr 264 (344)
+.++++++..+ .|+. =++.|.+++..+.++|+|.|-++|. .+ +.+.++.+. .++++.+.+||||.
T Consensus 188 ~ai~~~r~~~~~~kIe-VEv~tl~ea~eal~~gaDiI~LDnm-------~~---e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCE-VEVDSLEQLDEVLAEGAELVLLDNF-------PV---WQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEE-EEcCCHHHHHHHHHcCCCEEEeCCC-------CH---HHHHHHHHHHhccCCCEEEEEECCCC
Confidence 45788887653 5544 3678999999999999999999873 13 333333322 34578999999997
Q ss_pred CHHHHHHHHHcCCCEEEEchHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+.++-.+|+|.+.+|.+..
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 7888888889999999998764
No 214
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.26 E-value=0.0036 Score=55.04 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=55.8
Q ss_pred ecCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 207 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 207 v~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
+-+.++++.+.+.|+|++.++---.+. .+..+..++.+.++.+.. ++||++-||| +..++.++..+||+.|.+-+
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 467899999999999999997532221 111233466777777766 6999999999 68999999999999999877
Q ss_pred HH
Q 019244 285 PV 286 (344)
Q Consensus 285 ~~ 286 (344)
.+
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 53
No 215
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.24 E-value=0.0014 Score=59.29 Aligned_cols=101 Identities=33% Similarity=0.444 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc---------C------------CCCCC----------
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 234 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~---------~------------gG~~~---------- 234 (344)
+.+.|++|.+...+||..|-. -+.-+|+.+...|+|+|+=|- | |-|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 346799999999999999975 577889999999999998651 1 11110
Q ss_pred --------C--Cc----------------------------------hhhHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 019244 235 --------D--YV----------------------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTD 268 (344)
Q Consensus 235 --------~--~g----------------------------------~~~~~~l~~i~~~~~~~~~v--ia~GGIr~g~d 268 (344)
. .| ..+.+.+.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 00 0122333333332 36665 67999999999
Q ss_pred HHHHHHcCCCEEEEchHHHHH
Q 019244 269 VFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~~ 289 (344)
++-.+.||||.|++|+.++.+
T Consensus 223 AALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHhCCCeEEecccccCC
Confidence 999999999999999988763
No 216
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.24 E-value=0.0022 Score=57.44 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHH--HHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEec
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAED--ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDG 261 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~--a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~G 261 (344)
+.+.++.+++..+.+++.... .+..+ ...+...|+|++.+.+..+... .+-+..++.+.++. .++|+++.|
T Consensus 84 ~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaG 159 (203)
T cd00405 84 SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAG 159 (203)
T ss_pred CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEEC
Confidence 345788888877777763222 23222 3355668999998876321100 11133556666553 368999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 262 GVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 262 GIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
|| +++++.++++.| +++|-+.+.+..
T Consensus 160 GI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 160 GL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 99 899999999999 999999998764
No 217
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.24 E-value=0.0012 Score=61.16 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.-.+.|++.+.+-.- |.+..+.+.++.+.. .+||...||||+ +++.+++.+||+.|.+|+.++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999987433 344778888888876 699999999998 9999999999999999997764
No 218
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.23 E-value=0.0019 Score=59.38 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred CH-HHHHHHHH-cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 209 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 209 ~~-~~a~~~~~-~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
++ +.|+...+ .|+|.+.+..--+. ....+...+.+.++.+.+ .+||.+.|||||-+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 56777777 69999987542221 112345678888888765 699999999999999999999999999999976
Q ss_pred HH
Q 019244 287 VY 288 (344)
Q Consensus 287 l~ 288 (344)
+.
T Consensus 109 ~~ 110 (234)
T PRK13587 109 IQ 110 (234)
T ss_pred hc
Confidence 53
No 219
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.18 E-value=0.016 Score=52.74 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+.+. ++++-+=.+.|++++..+.++|+++|-. .-||-.|.|......+.++++.. ..+..|++.+ +|+
T Consensus 96 ~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~ 171 (222)
T PRK12656 96 AAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKN 171 (222)
T ss_pred HHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCC
Confidence 345555544 8999888899999999999999988754 44564444444445555544433 3356677755 999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
..++.++..+||+.+-+.-.++..+..+. ..+++.+.+.|.
T Consensus 172 ~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~ 214 (222)
T PRK12656 172 VAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWE 214 (222)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999998887764221 244555544443
No 220
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0027 Score=57.48 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+.-.+.|+|-++.-.--.+ .+.-.+.++.+.++++.+ -+|+..-|||++.+|+-+.|.+|||=|-|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 47789999999998876321000 011134567888888776 79999999999999999999999999999998765
No 221
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.15 E-value=0.006 Score=57.48 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|. =++.|.+++..+.++|+|.|-++|. +.+.+.++.+.++++.++-+||||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 46888888764 4444 3678999999999999999999874 3355666666666678899999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
+.+.++-+.|+|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
No 222
>PRK01362 putative translaldolase; Provisional
Probab=97.15 E-value=0.018 Score=52.23 Aligned_cols=113 Identities=23% Similarity=0.202 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~ 265 (344)
+.++.+.+. ++++-+=.+.|...+..+.++|+++|-. .-||-.|+|.+.+..+.++.+... .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 345555554 8999888899999999999999998865 446655666666666666665542 2455555 55999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.++..+|||.+-+.-.++..+..+. .+++..+-+.|
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw 209 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADW 209 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999988888765332 23444444433
No 223
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.12 E-value=0.0052 Score=57.28 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.++...+.|++.+.+..-.+.. ....+..+.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 356788999999999886532110 11245678888888765 79999999999999999999999999999987654
No 224
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.09 E-value=0.0033 Score=57.69 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=51.8
Q ss_pred HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC-cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 218 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 218 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~-~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
-.|...+.+...++. ..+...+.+.++++.. +. ||+..||||+.+++.+++..|||.|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 447666666533332 3345677888888766 56 999999999999999999999999999999875
No 225
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.08 E-value=0.0035 Score=57.45 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.--+. ..+.+...+.+.++.+.. .+||.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 35677888999999887531110 122356778888888876 59999999999999999999999999999998765
No 226
>PRK08005 epimerase; Validated
Probab=97.05 E-value=0.063 Score=48.58 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 190 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+++||+. ++-..+-.- .+.+..+..++ -+|.|.+=. -|.....+-+..++-+.++++... +..|-+||||.
T Consensus 98 ~l~~Ik~~-G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~- 173 (210)
T PRK08005 98 ILADIRAI-GAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT- 173 (210)
T ss_pred HHHHHHHc-CCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-
Confidence 35666664 443333222 33455554444 467666532 121112234455566666665543 35799999998
Q ss_pred HHHHHHHHHcCCCEEEEchHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.+.++.+.|||.+.+|+.++
T Consensus 174 ~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 174 LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHHHHCCCCEEEEChHhh
Confidence 6777788999999999998865
No 227
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.05 E-value=0.025 Score=51.88 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 238 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 238 ~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+.+++-+.++++... .++.|-+||||. .+.+.++.++|||.+.+|+..+|+. .+...+.++.+++.++
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 344455555554432 246799999999 5678888999999999998766531 1123345555555443
No 228
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.04 E-value=0.0054 Score=68.64 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-.......|.+-++..+...+ +.++.||+ +|.+|+.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 45778899999999999764321112345555555554433 45788998 9999999999999999999995433
Q ss_pred HHH--HHhhhcC------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~l--~~~~~~G------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
++- ..+...| .+.+.++++.+.++|...|..+|.++++.-++..+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 321 1121223 367889999999999999999999999988776554
No 229
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.03 E-value=0.0034 Score=57.65 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...+.|+|.+.+..--+. .......+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 46688888999999988643221 12345677888887766 6899999999999999999999999999999764
No 230
>PRK06801 hypothetical protein; Provisional
Probab=97.02 E-value=0.094 Score=49.69 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=73.8
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GG--Ir~g~dv~kalalGAd~V 280 (344)
.++++++... +.|+|++-++. ||-. +..+ ..++.|.++++.+ ++|+.+-|| |. .+++.+++.+|++-|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678988877 89999999953 2221 2222 4677888888876 699999998 77 688999999999999
Q ss_pred EEchHHHHHhhh-------cCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G~-------~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++.+..+... ... .-.....+.+++..+..|..+|+.
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988654221 010 112233345666667777777653
No 231
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.02 E-value=0.0086 Score=57.66 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccHHHHHh---h-cCCCCccccccccccccccccc--ccchhhHH--HHhhcCCCC
Q 019244 114 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDE--ANDSGLAA--YVAGQIDRS 185 (344)
Q Consensus 114 ~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~---~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~ 185 (344)
++.+..+++|..++.|-.|...|+-...+++. . ..+|. .-+++-.+..+. ....+... ++....+ +
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv-----LrKDFIID~yQI~eAr~~GADAVLLIaaiL~-~ 216 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL-----LCKEFIVDAWQIYYARSKGADAILLIAAVLP-D 216 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE-----eeccccCCHHHHHHHHHcCCCcHHHHHHhCC-H
Confidence 45566778899988888887777665555442 1 22221 001100001110 00000000 0100000 1
Q ss_pred CcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc-CCcEEEEccCCCCCCCCchhhHHHHHHHHH-----Hc-cCCCcEE
Q 019244 186 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QGRIPVF 258 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~-----~~-~~~~~vi 258 (344)
-.+..+-.+....++-++| +|-+.+++.++.++ |++.|-|-|..=..+..-..+ ..++.. .+ +.++-++
T Consensus 217 ~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~---t~~L~~~~~~~~i~~~~~~~V 292 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDISN---TKKLLEGERGEQIREKGIIVV 292 (338)
T ss_pred HHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHH---HHHHhhhccccccCCCCeEEE
Confidence 1233445555556777766 67899999999998 999998877533222222222 222332 22 2356688
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 259 LDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 259 a~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+-+||.+..|+.....+|||+|.||..+|..
T Consensus 293 sESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 8999999999999999999999999999874
No 232
>PRK12376 putative translaldolase; Provisional
Probab=97.01 E-value=0.02 Score=52.64 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHc----CCcEEEEccCCCCCCCCchhhHHHHHHHHHHcc--CCCcEEEec
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~----G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~--~~~~via~G 261 (344)
++.++.+.+. ++++-+=.+.|+.++..+.++ |+++|-. .-||-.|.|......+.++++.+. .+..|++.+
T Consensus 102 l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T PRK12376 102 IPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3456666554 899988889999998755555 5887755 446654555555555655554442 356777765
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhhh-------cChHHHHHHHHHHH
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLAA-------EGEKGVRRVLEMLR 306 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G~~~v~~~l~~l~ 306 (344)
||+..++.+++.+|||.+-+.-.++..+.. ...++++.+.+.|.
T Consensus 179 -iR~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~ 229 (236)
T PRK12376 179 -PREVYNIIQADQLGCDIITVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQ 229 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEEcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Confidence 999999999999999999999888877652 23455555555543
No 233
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.01 E-value=0.0084 Score=56.50 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~~~via-~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++|..+++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|-+|+.-|++..+..||++|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999999765221112234444455454443 34677877 8899999999999999999985221
Q ss_pred HH--HHHhhhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 019244 285 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 330 (344)
Q Consensus 285 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 330 (344)
.+ +..+...| ++.+.++++.+.++|...|..+|..+++.-++..+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 11 11222223 367899999999999999999999999988766543
No 234
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.99 E-value=0.0089 Score=56.31 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
+.++.+|+..+ .+|. =++.|.+++..+.++|+|.|-++|. +.+.+.++.+.++++..+.++|||. .
T Consensus 181 ~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~-~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN-L 248 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-H
Confidence 46888888764 3443 3678999999999999999999874 2344555555555677899999997 7
Q ss_pred HHHHHHHHcCCCEEEEchHHH
Q 019244 267 TDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l 287 (344)
..+.++...|+|.+.+|.+..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998653
No 235
>PLN02411 12-oxophytodienoate reductase
Probab=96.97 E-value=0.0072 Score=59.82 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcC-CcEEEEeecC-----------H----HHHHHHHHc------CCcEEEEccCCCC---CCC---Cchh
Q 019244 188 WKDVKWLQTITK-LPILVKGVLT-----------A----EDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA 239 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v~~-----------~----~~a~~~~~~------G~d~I~v~~~gG~---~~~---~g~~ 239 (344)
.+.|+.||+.++ -.|.+|.... . +.++.+.+. |+|+|.|+..... ... .+..
T Consensus 219 lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~ 298 (391)
T PLN02411 219 MQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSE 298 (391)
T ss_pred HHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCc
Confidence 467999999884 2488887521 1 123444432 5999999853110 000 1111
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHH
Q 019244 240 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 288 (344)
Q Consensus 240 --~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~ 288 (344)
......++++.+ ++|||+.||| +..++.++++.| ||+|.+||+++-
T Consensus 299 ~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 299 EEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred cchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 112345666666 6899999999 578899999999 999999999985
No 236
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.96 E-value=0.0039 Score=57.31 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+-++++.+.|+..|.+.+- -|+. .| +.++.+..+.+. ..+++++|||++-+|+.++..+|+++|.+|++++.
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5578889999988877542 2221 12 456667666543 34599999999999999999999999999999874
No 237
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.94 E-value=0.005 Score=55.98 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=55.0
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|..+...|...|.+... |. ....+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe~S-G~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEYS-GA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCCC-CC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 56677889888888722 22 245567777776542 69999999999999999999999999999998874
No 238
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.93 E-value=0.0066 Score=55.50 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=46.2
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
..=.|...|.+--..|+ .++++ ..+.++++.+ .++|+|..|||||.+++.+++..|||.|.+|+.|...
T Consensus 149 ~~~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 149 AEYLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HHHTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HHHhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 33467888888542222 22332 3344455554 4899999999999999999999999999999998653
No 239
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=96.92 E-value=0.036 Score=50.46 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCC
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 265 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~ 265 (344)
+.++.+++. ++++-+=.+.|.+++..+..+|+++|-. .-||-.+.|...+..+.++.+.. +.+..|++. .+|+
T Consensus 94 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaA-S~r~ 169 (220)
T PRK12653 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAA-SFKT 169 (220)
T ss_pred HHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEE-ecCC
Confidence 345555554 8999888899999999999999998865 34553344444444444444433 235666664 4999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 305 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l 305 (344)
..++.+++.+|||.+-+.-.++..+..+- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12653 170 PRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999999999988765332 23444444433
No 240
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.91 E-value=0.0037 Score=55.13 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhcCCcEE--EEee---------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pvi--vK~v---------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..++|+.+++.+++||| +|.. .+.++++.+.++|+|.|-++..... .. .+..+.+.++++. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~----~ 92 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRP-RP--ETLEELIREIKEK----Y 92 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHC----T
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHh----C
Confidence 45789999999999985 3531 4679999999999999999865321 11 2333455666542 2
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.++...|.|-+|...+..+|+|+|+--
T Consensus 93 -~l~MADist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 93 -QLVMADISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp -SEEEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred -cEEeeecCCHHHHHHHHHcCCCEEEcc
Confidence 444556899999999999999998643
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.90 E-value=0.0069 Score=54.92 Aligned_cols=81 Identities=26% Similarity=0.223 Sum_probs=60.2
Q ss_pred cHHHHHHHHHhcC----CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 187 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~~i~~i~~~~~----~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
..+.|+.+++.++ +.|.+..|++.++++.+.++|+++|+--+ ...+.+..+. . .++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~--~~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-L--YQIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-H--cCCCEEC--C
Confidence 3467999998873 55777778999999999999999996311 0123333222 1 2566654 8
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+.|+.++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 242
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.86 E-value=0.0038 Score=56.35 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHhcCCcEEEEee---cCHHH-HHHHHHcCCcEEEEccCCCCC---------------------CC-----
Q 019244 186 LSWKDVKWLQTITKLPILVKGV---LTAED-ARIAVQAGAAGIIVSNHGARQ---------------------LD----- 235 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v---~~~~~-a~~~~~~G~d~I~v~~~gG~~---------------------~~----- 235 (344)
+..+.++++|+.+.+|+=+|.- .+++. ++.+.++|+|.+++....|.. +.
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 3457899999877666667874 23343 377889999999997533210 00
Q ss_pred -----------------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEEEEchHHHHHhh
Q 019244 236 -----------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 236 -----------------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.....+-+.++++....++ .+.+|||+... ++.+++..|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 00011122233333332223 34999999863 6778889999999999996642
Q ss_pred hcChHHHHHHHHHHHHHHH
Q 019244 292 AEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 292 ~~G~~~v~~~l~~l~~el~ 310 (344)
+...+.++.++++++
T Consensus 199 ----~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ----ADPREAAKAINEEIR 213 (215)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 123455666666554
No 243
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.84 E-value=0.019 Score=58.60 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 191 VKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+...|+..+-..++... .+.+++..+.+.|+|+|.++--..+. .+.-+..++.+.++.+.. ++||++-|||. ..
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 34555554433444443 57899999999999999875321111 111122356666665544 79999999996 89
Q ss_pred HHHHHHHcCCC---EEEEchHHHH
Q 019244 268 DVFKALALGAS---GIFIGRPVVY 288 (344)
Q Consensus 268 dv~kalalGAd---~V~ig~~~l~ 288 (344)
++.+.+++||+ .|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999874
No 244
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.84 E-value=0.013 Score=53.93 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.+-.-.+.. ...+..+.+.++.+.. ..|+...|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 366888889999999886533321 2345567788877633 25999999999999999999999999999997654
No 245
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=96.80 E-value=0.048 Score=49.65 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---cCCCcEEEecCCCCH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 266 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~~~via~GGIr~g 266 (344)
.++.+.+. ++++-+=.+.|++++..+..+|+++|-. .-||-.+.|...+..+.++.+.. +.+..|++. .+|+.
T Consensus 95 Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaA-S~r~~ 170 (220)
T PRK12655 95 AIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAA-SFKTP 170 (220)
T ss_pred HHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEE-ecCCH
Confidence 45555543 8999888899999999999999997755 33443333434445555554433 235666665 49999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHHhhhcC--hHHHHHHHHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLR 306 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~~~~~G--~~~v~~~l~~l~ 306 (344)
.++.+++.+||+.+-+.-.++..+..+- .++++.+.+.|.
T Consensus 171 ~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~ 212 (220)
T PRK12655 171 RQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQ 212 (220)
T ss_pred HHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999999888765332 245555555543
No 246
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0055 Score=59.90 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEccCCCCC--CCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 189 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
..+..+.+..++|+-+|.. -+.+..+++.+.|+.+|.|.. .+. ...-+++.+.+.++...++ .+|||+.
T Consensus 139 ~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~--rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~n 215 (477)
T KOG2334|consen 139 AILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHC--RTRDERNQEPATKDYIREIAQACQ-MVPVIVN 215 (477)
T ss_pred HHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEe--eccccCCCCCCCHHHHHHHHHHhc-cceEeec
Confidence 4578888888999999986 234567889999999999943 221 1234667888999988884 4999999
Q ss_pred cCCCC---HHHHHHHHH-cCCCEEEEchHHHHH
Q 019244 261 GGVRR---GTDVFKALA-LGASGIFIGRPVVYS 289 (344)
Q Consensus 261 GGIr~---g~dv~kala-lGAd~V~ig~~~l~~ 289 (344)
||.++ ..|+.+.-. .|++.||++|...+.
T Consensus 216 g~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 216 GGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred cchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 99999 889988876 799999999976554
No 247
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.79 E-value=0.013 Score=52.04 Aligned_cols=79 Identities=28% Similarity=0.321 Sum_probs=59.4
Q ss_pred HHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++.++ +++....+.+.+.+..+.++|+|+|...+ . ..+ +.+.++.. .++++. |+.|.+
T Consensus 44 ~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~~-~~~~~~~~--~~~~i~--gv~t~~ 108 (190)
T cd00452 44 EAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DPE-VVKAANRA--GIPLLP--GVATPT 108 (190)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CHH-HHHHHHHc--CCcEEC--CcCCHH
Confidence 46888888875 66777777889999999999999996421 1 112 22233333 567765 888999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.+++.+|||.+.+
T Consensus 109 e~~~A~~~Gad~i~~ 123 (190)
T cd00452 109 EIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999997
No 248
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.75 E-value=0.037 Score=50.06 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCC-CC--CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~-~~--~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
-+.+++..+.+.|+|++.++---.+. -. ..+..++.+.++.+.. .++||++-|||. ..++.+.++.||+.|.+-+
T Consensus 110 H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvis 187 (211)
T PRK03512 110 HDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVVS 187 (211)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhh
Confidence 56788999999999999997422221 11 1122345555555442 269999999998 8999999999999999999
Q ss_pred HHHH
Q 019244 285 PVVY 288 (344)
Q Consensus 285 ~~l~ 288 (344)
.++.
T Consensus 188 ai~~ 191 (211)
T PRK03512 188 AITQ 191 (211)
T ss_pred HhhC
Confidence 9874
No 249
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.75 E-value=0.03 Score=52.68 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+.|+++++.+++||+.|.-. ...+++.+.++|+|.|+-+..- .|.-+.+..+.... ++| +..|++|
T Consensus 62 ~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~--fmad~~~ 130 (293)
T PRK04180 62 DPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVP--FVCGARN 130 (293)
T ss_pred CHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCC--EEccCCC
Confidence 3468999999999999998754 4789999999999999643210 12223344443333 444 4558999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-++++.++.+|||.|.-
T Consensus 131 l~EAlrai~~GadmI~T 147 (293)
T PRK04180 131 LGEALRRIAEGAAMIRT 147 (293)
T ss_pred HHHHHHHHHCCCCeeec
Confidence 99999999999998864
No 250
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.72 E-value=0.027 Score=56.00 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=64.1
Q ss_pred HHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCC---CCCchhhHHHHHHHHHHcc-------CCCcEEEe
Q 019244 192 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 260 (344)
Q Consensus 192 ~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~---~~~g~~~~~~l~~i~~~~~-------~~~~via~ 260 (344)
..+|+..+--.++... -+.+++.++.+.|+|+|.++----+. ...-+--++.|.++.+.+. ..+|+++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3344433322344443 46789999999999999986321111 1111223455555544432 26999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
||| +..++...++.||+.|.+-|.++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 589999999999999999999874
No 251
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.71 E-value=0.015 Score=51.89 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcEEEEcc-C-CCCCCCCchhhHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 211 EDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~-~-gG~~~~~g~~~~~~l~~i~~~~~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
+.++.. ..++|++.+.. + |++...+.....+.+.++++... .++|+++.|||+. +++.+++..|||.+.+||+
T Consensus 119 ~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsa 196 (211)
T cd00429 119 EVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred HHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHH
Confidence 334443 44589887654 2 22222222333445555554432 2489999999995 9999999999999999999
Q ss_pred HHH
Q 019244 286 VVY 288 (344)
Q Consensus 286 ~l~ 288 (344)
++.
T Consensus 197 i~~ 199 (211)
T cd00429 197 LFG 199 (211)
T ss_pred HhC
Confidence 874
No 252
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.71 E-value=0.037 Score=51.46 Aligned_cols=70 Identities=27% Similarity=0.397 Sum_probs=54.4
Q ss_pred HHHHHH-HHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 211 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 211 ~~a~~~-~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+.++.+ ...++|+|+|+|.. .+.+++.+.|.++++.++ +||++.+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~~--~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAVP--VPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcCC--CCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 334444 57899999998742 123677888888888773 9999999987 7888888866 999999998753
No 253
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.70 E-value=0.01 Score=54.82 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...+.|+|.+.+-.--+. ....+...+.+.++.+.+ .||.+.|||||-+|+.+++.+||+-|.+|+..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 5688888999999887532111 112345677888887765 699999999999999999999999999999765
No 254
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.68 E-value=0.011 Score=54.90 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=54.4
Q ss_pred HHHHHHHHcC-CcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAG-AAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G-~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++.+...| +|+|+|+|.+ |. +++++.|.++++.. .++|++..||+. ++.+.+++.. ||++.+|+.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~TG~-----~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKTTGT-----EVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCCCCC-----CCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4577767666 9999999854 32 45677788777644 368999999997 8999999987 99999999874
No 255
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.66 E-value=0.29 Score=46.25 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=74.0
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 281 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V~ 281 (344)
.+|+++.+.. +.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|+.-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 4678876644 78999999874 5432 2322 367899998877 7999998877776 667789999999999
Q ss_pred EchHHHHHhhh-------cC---h---HHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 282 IGRPVVYSLAA-------EG---E---KGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 282 ig~~~l~~~~~-------~G---~---~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++|-+..+... .. . .-.....+.+++..+..|..+|+.
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987554210 00 0 112333456777778888888764
No 256
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.66 E-value=0.013 Score=52.50 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=58.7
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ +-|.+..|++.++++.+.++|+++|+--+ -..+.+..+.+ . ++| ..=|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~~-~--~i~--~iPG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAND-S--DVP--LLPGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCC--EeCCCCC
Confidence 3456888888773 66777778999999999999999995421 12233333322 1 344 4458999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998854
No 257
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.63 E-value=0.014 Score=52.25 Aligned_cols=81 Identities=28% Similarity=0.298 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++++ ++-|.+..|++.++++.+.++|+++++--+ -+.+.+..+.+. ++|++ =|+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~i--PG~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYI--PGVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCccc--CCcCC
Confidence 456788898887 466777778999999999999999996521 122344443332 45555 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
No 258
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.62 E-value=0.011 Score=53.14 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=51.5
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+..+...|++.|.+-..-|. .-+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45677889999988543232 1123467777887776 799999999999999999989999999886
No 259
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.62 E-value=0.026 Score=54.45 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|++.|.++.+.|.. ....+.+.++++..+ +++|++ |.+.+..++.+++.+|||++.++
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 55788999999999997543321 234566777776543 588887 99999999999999999999873
No 260
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.59 E-value=0.028 Score=50.66 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGI 263 (344)
.++.+++. ++.+++-.. .+..+..+....++|+|.+... |++...+.....+.+.++++.... ..+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 45555553 554444322 2333433444456898877542 322222222334445555544321 1446789999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+. +++.+++..|||.|.+||.++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 98 7999999999999999999874
No 261
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.56 E-value=0.016 Score=57.58 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=72.7
Q ss_pred HHHHHHhc-CCcEEEEeecC--------HHHHHHHH-HcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 191 VKWLQTIT-KLPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v~~--------~~~a~~~~-~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
++.....+ .+|+-||+... .+-...+. +-|+++|++.|....|...-...++.+.++++.+...+|+|+.
T Consensus 381 l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGN 460 (614)
T KOG2333|consen 381 LRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGN 460 (614)
T ss_pred HHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEec
Confidence 44444444 47999998621 23344455 8999999994332223444456789999999888766999999
Q ss_pred cCCCCHHHHHHHHHcC--CCEEEEch-----HHHHH
Q 019244 261 GGVRRGTDVFKALALG--ASGIFIGR-----PVVYS 289 (344)
Q Consensus 261 GGIr~g~dv~kalalG--Ad~V~ig~-----~~l~~ 289 (344)
|.|-|-+|=.+.+..+ .+.|||+| ||+|.
T Consensus 461 GDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 461 GDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred CccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 9999999999999877 89999999 56653
No 262
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.55 E-value=0.062 Score=49.41 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHH---HHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHcc--CCCcEEEec
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 261 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~---~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~--~~~~via~G 261 (344)
++.++.+++. ++++-+=.+.|+..+..+ ..+| +++|.. .-||-.|.|......+.++++.+. .+..|++.+
T Consensus 102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T TIGR02134 102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence 5567777665 889888888999998864 4589 587765 446654555555555555554432 367788866
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 262 GVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+|+..++.++..+|||.+-+.-.++..+.
T Consensus 179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 179 -PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999988887764
No 263
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.05 Score=49.03 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCcEEEEee--cCHHHH-HHHHHcCCcEEEEccCCCCCCC-Cch-hhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTITKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGARQLD-YVP-ATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v--~~~~~a-~~~~~~G~d~I~v~~~gG~~~~-~g~-~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+..-+..+.+++-+.+=++ .++++. +++.++|+|.+.+ |-|+... .|. +.++.|.++.+.......|-..|||
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI 173 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI 173 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC
Confidence 3333333445777776665 456664 5555699999998 5554211 222 3366677776665434789999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
. ++++-.+...|++.|.+||.+-. ...+.+..+.+++++.
T Consensus 174 ~-~~~i~~~~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 174 T-PEDIPLFKGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred C-HHHHHHHhcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 7 89999999999999999998853 3333445555665553
No 264
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.54 E-value=0.016 Score=52.78 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.1
Q ss_pred cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 219 ~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|...|.+--.||. ..+-..+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57787777543433 22334566777777653 69999999999999999999999999999998865
No 265
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.54 E-value=0.058 Score=50.56 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.++|++|++.+++|||-+.-. ...+++.+.++|+|.|..+..- .|.-+.+..++... ++ .+..+++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~--l~MAD~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KV--PFVCGARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CC--cEEccCCC
Confidence 4578999999999999876543 3789999999999999643211 12334455554432 44 44557999
Q ss_pred HHHHHHHHHcCCCEEEEchHHHHHhhhcCh-HHHHHHHHHHHHHHHHHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVYSLAAEGE-KGVRRVLEMLREEFELAMAL 315 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~~~~~~G~-~~v~~~l~~l~~el~~~m~~ 315 (344)
-+++..+..+|||.|.-- +. + ..|. ....+.+..+..|++....+
T Consensus 122 leEal~a~~~Gad~I~TT--l~-g--yT~~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 122 LGEALRRISEGAAMIRTK--GE-A--GTGNVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred HHHHHHHHHCCCCEEEec--CC-C--CCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999987533 21 1 1121 11224456677777754444
No 266
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.49 E-value=0.27 Score=45.61 Aligned_cols=97 Identities=29% Similarity=0.368 Sum_probs=61.8
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc---hhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g---~~~~~~l~~i~~~~~~~~~v 257 (344)
+++.++.+.+ +++||++|-- .++++ ++.+.+.|..-|.+.-.|=+....- ...+.+++.+++.. .+||
T Consensus 111 n~~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPV 187 (250)
T PRK13397 111 NFEFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPI 187 (250)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCe
Confidence 4556777766 5999999976 46665 4566778886666643232222211 23455666666544 6899
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLD----GGVRR--GTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~----GGIr~--g~dv~kalalGAd~V~ig~~~ 286 (344)
+++ +|.|. ..-...|+++|||.+++-+.+
T Consensus 188 ivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 188 IVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred EECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 996 44433 123557888999999998755
No 267
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.48 E-value=0.017 Score=53.48 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.++...+.|+..+.+.---+. .+.+...+.+.++.+.+ .+|+.+.|||||.+|+.+++.+||+-|.+|+..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3445567788888777532111 12345677888888776 5899999999999999999999999999999765
No 268
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.45 E-value=0.037 Score=54.63 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=60.2
Q ss_pred HHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 191 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
++.+++ .++-+++-.. .++.+.......++|.|.+.. +.......+.+..+.++++. ..+++|.++|||. .++
T Consensus 269 i~~akk-~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~et 343 (391)
T PRK13307 269 IHEAQK-TGIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VEN 343 (391)
T ss_pred HHHHHH-cCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHH
Confidence 444444 3555554322 344443333388999998853 11111223455666666654 3478999999999 788
Q ss_pred HHHHHHcCCCEEEEchHHHH
Q 019244 269 VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~l~ 288 (344)
+-+++.+|||.+.+||.++.
T Consensus 344 i~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 344 VEEALKAGADILVVGRAITK 363 (391)
T ss_pred HHHHHHcCCCEEEEeHHHhC
Confidence 88999999999999999653
No 269
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.43 E-value=0.099 Score=49.72 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHcCCcEEEEc--c-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 019244 208 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~--~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG--Ir~g~dv~kalalGAd~V~i 282 (344)
.++++|+.+.+.|+|++-++ + ||-+.-..-.-.++.|.++++.+. ++|+++=|| |. .+++.+++..|++-|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57899999999999999998 3 553311111235678899988762 499999998 86 68899999999999999
Q ss_pred chHHHH
Q 019244 283 GRPVVY 288 (344)
Q Consensus 283 g~~~l~ 288 (344)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998864
No 270
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.42 E-value=0.047 Score=52.01 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHHHHhcC-----CcEEEEeecCHHHHHHHHH------cCCcEEEEccC--CCCCCCCchhhHHHHHHHHHHccCCCc
Q 019244 190 DVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 190 ~i~~i~~~~~-----~PvivK~v~~~~~a~~~~~------~G~d~I~v~~~--gG~~~~~g~~~~~~l~~i~~~~~~~~~ 256 (344)
.++.+++..+ .+| .=++.|.++++.+.+ +|+|.|-++|. ..... ..+.+.+.++.+.++++.+
T Consensus 189 av~~~r~~~~~~~~~~kI-eVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKI-EVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHhhhhcCCCeeE-EEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCce
Confidence 4666666321 233 335689999999999 99999999885 21111 1245666666666666789
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+-+||||. ...+.++...|+|.+.+|.+..
T Consensus 265 lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 99999997 7888888889999999997654
No 271
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.42 E-value=0.026 Score=52.89 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.++|++|++.+++||+-|.- ....+++.+.++|+|.|+-+..- .|.-+.+..+.... ++ .+..|++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~v--pfmad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KV--PFVCGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CC--CEEccCCC
Confidence 457899999999999998865 45789999999999999643211 12233344443322 44 44568999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
-++++.++.+|||.|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998753
No 272
>PRK08999 hypothetical protein; Provisional
Probab=96.40 E-value=0.016 Score=55.21 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 285 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~ 285 (344)
-+.+++..+.+.|+|+|.++--.-+.- +.-+..++.+.++.+.. ++||+|-||| +..++...+++||+.|.+-+.
T Consensus 234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 578889999999999999874322211 11122356677776655 7999999999 899999999999999988765
Q ss_pred H
Q 019244 286 V 286 (344)
Q Consensus 286 ~ 286 (344)
+
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 4
No 273
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.33 E-value=0.061 Score=48.84 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=67.8
Q ss_pred HHHHHHHHHhc-CCcEEE--EeecCHH-HHHHHHHcCCcEEEEccCCCCC-----------------------C------
Q 019244 188 WKDVKWLQTIT-KLPILV--KGVLTAE-DARIAVQAGAAGIIVSNHGARQ-----------------------L------ 234 (344)
Q Consensus 188 ~~~i~~i~~~~-~~Pviv--K~v~~~~-~a~~~~~~G~d~I~v~~~gG~~-----------------------~------ 234 (344)
.+.++++++.. +.||.+ |.-.-+. .+..+.++|+|.++|.+.+|.. .
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 35688888874 677765 4332222 2335889999999997644421 0
Q ss_pred --------------------CCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 235 --------------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 235 --------------------~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
++..-..+.+..+++..+.+..+.++|||+-. .+-+....|||.+.+|||+..+
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a----- 197 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGA----- 197 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCC-----
Confidence 00000112333444443334568999999942 2223344599999999996542
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019244 295 EKGVRRVLEMLREEFEL 311 (344)
Q Consensus 295 ~~~v~~~l~~l~~el~~ 311 (344)
+.....++.++++++.
T Consensus 198 -~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 198 -ADPAAAARAFKDEIAK 213 (216)
T ss_pred -CCHHHHHHHHHHHHHh
Confidence 2234456666666643
No 274
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.28 E-value=0.018 Score=56.91 Aligned_cols=67 Identities=12% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+..+.++|+|.|+++...|. +....+.+.++++..+ +++| ..|+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDL-IAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcE-EEEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998764332 2345567778877653 4554 4588999999999999999999876
No 275
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.28 E-value=0.022 Score=53.10 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+.|+...+.|++.+.|---+| ..+...+.+.++++ + .+||-.-||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4678899999999887754222 12345677888877 5 599999999997 9999999999999999998764
No 276
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.28 E-value=0.052 Score=48.76 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCH
Q 019244 188 WKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 266 (344)
Q Consensus 188 ~~~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g 266 (344)
++.+-.+.+..++ |++ ++.+.++..++++.|+..|-|-|..=+.+..-.++..-|.+ .++.++-+++-+||.|+
T Consensus 175 lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL~E---~i~kDvilva~SGi~tp 249 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKLLE---GIPKDVILVALSGIFTP 249 (289)
T ss_pred HHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHHHh---hCccceEEEeccCCCCH
Confidence 3445555665554 433 46788999999999999998877543333333333333333 34557889999999999
Q ss_pred HHHHHHHHcCCCEEEEchHHHHH
Q 019244 267 TDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 267 ~dv~kalalGAd~V~ig~~~l~~ 289 (344)
.|++++-..|..+|.+|-.++..
T Consensus 250 dDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 250 DDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHcCceEEEecHHHHhc
Confidence 99999999999999999999874
No 277
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.26 E-value=0.037 Score=49.94 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcC--CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 188 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 188 ~~~i~~i~~~~~--~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
.+.|+.+++.++ +.|.+..+++.++++.+.++|+++++..+ ...+.+. .+.. ..++++. |..|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~-~~~~--~~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIR-RAVA--LGMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHH-HHHH--CCCcEEc--ccCC
Confidence 356999998885 45666667999999999999999996522 1122222 2222 2455544 3999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
..++.++..+|||.+.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999986
No 278
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.18 E-value=0.069 Score=49.95 Aligned_cols=84 Identities=23% Similarity=0.359 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcEEEEee------cCH-----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 191 VKWLQTITKLPILVKGV------LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~-----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+.+-.+.|++|+++ .. .+. .-++.+.+.|||.|++.- +. +.+.++.+.. .+||+.
T Consensus 132 v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvi 197 (264)
T PRK08227 132 LVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVI 197 (264)
T ss_pred HHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEE
Confidence 44445568999987 32 111 126789999999999831 12 6677777755 799999
Q ss_pred ecCCCCH-HHH----HHHHHcCCCEEEEchHHHH
Q 019244 260 DGGVRRG-TDV----FKALALGASGIFIGRPVVY 288 (344)
Q Consensus 260 ~GGIr~g-~dv----~kalalGAd~V~ig~~~l~ 288 (344)
.||=... .|+ ..++..||..|.+||-++.
T Consensus 198 aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 198 AGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 9998853 233 3577789999999997654
No 279
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.10 E-value=0.033 Score=50.76 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=55.4
Q ss_pred HHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 188 WKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
.+.|+.+++.+ ++-|.+..|++.++++.+.++|+++|+--+. ..+.+..+.+ .++|+ -=|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~----------~~~v~~~~~~---~~i~~--iPG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF----------NPDIAKVCNR---RKVPY--SPG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCE--eCC
Confidence 44566665433 2557777789999999999999999964211 2233333322 14444 458
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+-|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998754
No 280
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.00 E-value=0.045 Score=49.15 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 239 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 239 ~~~~~l~~i~~~~---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
..++-+.++++.. +.++.|.+||||+. ..+.+..++|||.+.+||.++
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 3444455554433 34699999999984 577788889999999998765
No 281
>PRK08185 hypothetical protein; Provisional
Probab=95.97 E-value=1.5 Score=41.50 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=74.8
Q ss_pred cCHHHHHHHHHc-CCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEE
Q 019244 208 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~~~-G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V 280 (344)
.++++++...+. |+|++-++. ||-.. ..+.| .++.|.++++.+ ++|+++=||+..+. ++.|++.+|..=|
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 478999998876 999999964 33221 11122 478899998877 79999999997665 5567899999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+.++... .. ..-.....+.+.+..+..|..+|+.
T Consensus 226 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 226 NISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred EeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 01 0113333455677777788888764
No 282
>PLN02591 tryptophan synthase
Probab=95.92 E-value=0.13 Score=47.70 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=79.3
Q ss_pred ccccceeecccccccccCChhhHHHHHHHHHcCCcc--cc-CCHHHHHHHHHHHHHcCCcEEE-eccCCccccccHHHHH
Q 019244 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM--VY-KDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIK 144 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~--~~-~d~~~~~~~i~~a~~ag~~~l~-~tvd~~~~g~r~~~~~ 144 (344)
+.+.|+++ |++-+....-+.....+.|+++|+-. ++ -..+..+++...+++.|...+. +++.++. .|-+.+.
T Consensus 76 ~~~~p~il--m~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~--~ri~~ia 151 (250)
T PLN02591 76 QLSCPIVL--FTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT--ERMKAIA 151 (250)
T ss_pred CCCCCEEE--EecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHH
Confidence 34568764 77666443346667788888888754 11 2346666778888888877543 4455442 1222211
Q ss_pred hhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcH-HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCc
Q 019244 145 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAA 222 (344)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d 222 (344)
. ...|+.. .+. .....+. ...-+... +.++.+|+.+++||++..- .++++++++.+.|+|
T Consensus 152 ~---~~~gFIY-~Vs--------~~GvTG~------~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GAD 213 (250)
T PLN02591 152 E---ASEGFVY-LVS--------STGVTGA------RASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGAD 213 (250)
T ss_pred H---hCCCcEE-Eee--------CCCCcCC------CcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCC
Confidence 1 1111111 000 0000000 00001123 3599999988999999754 679999999999999
Q ss_pred EEEEcc
Q 019244 223 GIIVSN 228 (344)
Q Consensus 223 ~I~v~~ 228 (344)
+++|..
T Consensus 214 GvIVGS 219 (250)
T PLN02591 214 GVIVGS 219 (250)
T ss_pred EEEECH
Confidence 999954
No 283
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.88 E-value=0.078 Score=48.04 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=60.3
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ +-|.+..+++.++++.+.++|+++++.-+. +.+.+..+.+ ..++++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~---~~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE---GPIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCEe--CCCCC
Confidence 3456899988774 667777789999999999999999976321 1144444332 134444 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 019244 266 GTDVFKALALGASGIFI 282 (344)
Q Consensus 266 g~dv~kalalGAd~V~i 282 (344)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999877
No 284
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=95.87 E-value=0.11 Score=48.57 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=66.8
Q ss_pred cHH-HHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHH--ccCCCcEEEecC
Q 019244 187 SWK-DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 262 (344)
Q Consensus 187 ~~~-~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~--~~~~~~via~GG 262 (344)
+|+ .|++.|+..+ .+-|-=++-|.+++..+.++|+|.|-++|.. + +.+.++.+. .++++-+=+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~-------~---e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS-------P---EELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC-------H---HHHHHHHHHhccCCceEEEEeCC
Confidence 454 5888888764 3334445689999999999999999998842 2 344444444 455788889999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~ 286 (344)
|. ...+..+-..|.|.+-+|.+.
T Consensus 243 It-~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 IT-LENIREYAETGVDVISVGALT 265 (280)
T ss_pred CC-HHHHHHHhhcCCCEEEeCccc
Confidence 97 788888888999999999764
No 285
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.81 E-value=0.16 Score=47.57 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+|+.+++|+.+..- .++++++.+.++|+|+++|..
T Consensus 192 ~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 192 KLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4688999988999999764 669999999999999999953
No 286
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.77 E-value=0.042 Score=55.39 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|.|...-|+ ....++.+.++++.. .++||++ |+|-|.+++..++.+|||+|.+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 46788999999999999874332 234566777777764 3789988 99999999999999999999766
No 287
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.77 E-value=0.098 Score=50.90 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.+..+.++|+|.|+++..-|+ .....+.+.++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46788899999999999863332 2344567788877764 788886 88999999999889999999888
No 288
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.73 E-value=0.16 Score=46.78 Aligned_cols=114 Identities=23% Similarity=0.279 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCC-cc----ccCCHHH----HHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM----VYKDRNV----VAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~----~~~d~~~----~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+. -. +..|+.. ..+.+++++.. ||..+-+..|.+....+-.+..-.+-.|.|
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg------ 152 (248)
T cd04728 79 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG------ 152 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC------
Confidence 457777776643 33 2333321 23456677766 999887888878776554432100000100
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.. +.+-.+++.|+.+++..++||++-+ +.+++++.++.+.|+|++.+.+
T Consensus 153 -----------------~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 153 -----------------SPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -----------------cCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 01111 1122257789999998889999876 5899999999999999999854
No 289
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.71 E-value=1.5 Score=42.98 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCC-Cch--hhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVP--ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~-~g~--~~~~~l~~i~~~~~~~~~v 257 (344)
+++.++.+.+ +++||++|..+ +.++. ..+.+.|..-|++.-+|=+... .+. ..+.+++.+++.. .+||
T Consensus 214 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV 290 (360)
T PRK12595 214 NFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPV 290 (360)
T ss_pred CHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCE
Confidence 4566777766 58999999874 77663 4556788866666533433222 111 2556777777654 6899
Q ss_pred EEecC----CCCHH--HHHHHHHcCCCEEEEchHH
Q 019244 258 FLDGG----VRRGT--DVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~GG----Ir~g~--dv~kalalGAd~V~ig~~~ 286 (344)
+.+.. -|... -...|+++|||++++-+.+
T Consensus 291 ~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 291 MVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred EEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99643 22222 3345789999999999877
No 290
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.71 E-value=0.06 Score=55.40 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEEccCCC-CC-CCCchhhHHHHHHHHHHccCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 019244 211 EDARIAVQAGAAGIIVSNHGA-RQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 277 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG-~~-~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g-----------~dv~kalalGA 277 (344)
+.|+.-.+.|||.|.+-.--+ +. ...-.+.++.+.++.+.+ .+|+-+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 668889999999988754322 11 111234577888888776 7999999999998 55899999999
Q ss_pred CEEEEchHHHH
Q 019244 278 SGIFIGRPVVY 288 (344)
Q Consensus 278 d~V~ig~~~l~ 288 (344)
|-|.+++..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997765
No 291
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.70 E-value=0.054 Score=55.40 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+-++.+.++|+|.|.++..-|+ ....++.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 46688999999999999875442 2345577888877553 455544 88999999999999999999775
No 292
>PLN02417 dihydrodipicolinate synthase
Probab=95.70 E-value=0.11 Score=49.08 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=60.7
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++||++.=|=.+-.|+++ |-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 34567899999999876553211111 123345555666667899998666556666664 3568999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245677777666554
No 293
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.69 E-value=0.055 Score=55.24 Aligned_cols=230 Identities=17% Similarity=0.219 Sum_probs=122.2
Q ss_pred cccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-cc--CCHHHHHHHH
Q 019244 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VY--KDRNVVAQLV 116 (344)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~--~d~~~~~~~i 116 (344)
.||++.|+|..-. ..++||++|.+- ...++.||+-++|.. -.+..||.+.++.|... ++ .+.+...+.+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~------vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v 92 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDT------VTEHKMAIAMALMGGIGVIHNNCSIEEQVEEV 92 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccc------cccHHHHHHHHHCCCeEEecCCCCHHHHHHHH
Confidence 3999999998542 446889998876 468899999999963 24567999999998766 33 2556666667
Q ss_pred HHHHHcCC----cEEEeccCCccccccHHHHHhhcC-CCCccc----ccccccccccccc--cccchhhHHHHhh--c--
Q 019244 117 RRAERAGF----KAIALTVDTPRLGRREADIKNRFT-LPPFLT----LKNFQGLDLGKMD--EANDSGLAAYVAG--Q-- 181 (344)
Q Consensus 117 ~~a~~ag~----~~l~~tvd~~~~g~r~~~~~~~~~-~~~g~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-- 181 (344)
++++++.- ..+.++++.+..-....-.+.++. +|.--. -+.++-+....+. ........+++.+ .
T Consensus 93 ~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lv 172 (495)
T PTZ00314 93 RKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLV 172 (495)
T ss_pred hhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCce
Confidence 77765421 123334443321111100001110 110000 0000000000000 0000011111111 0
Q ss_pred -CCCCCc------------------------------HHHHHHHHHh------cCCcEEEEee--cC---HHHHHHHHHc
Q 019244 182 -IDRSLS------------------------------WKDVKWLQTI------TKLPILVKGV--LT---AEDARIAVQA 219 (344)
Q Consensus 182 -~~~~~~------------------------------~~~i~~i~~~------~~~PvivK~v--~~---~~~a~~~~~~ 219 (344)
...+.+ .+++.+.... -...+.|... .+ .+.++.+.++
T Consensus 173 tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~a 252 (495)
T PTZ00314 173 VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEA 252 (495)
T ss_pred EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHC
Confidence 001111 1222111110 0122333222 22 3568889999
Q ss_pred CCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 220 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 220 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
|+|.|.+...-|+. ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 253 g~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 253 GVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred CCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999998643321 224677888877653 688887 99999999999999999999654
No 294
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.69 E-value=0.21 Score=53.64 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred EEEee-cCHHHHHHHH----Hc---CCcEEEEccCCCCCCC-Cc--hhhHHHHHHHHHHccC-CCcEEEecCCCCHHHHH
Q 019244 203 LVKGV-LTAEDARIAV----QA---GAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVF 270 (344)
Q Consensus 203 ivK~v-~~~~~a~~~~----~~---G~d~I~v~~~gG~~~~-~g--~~~~~~l~~i~~~~~~-~~~via~GGIr~g~dv~ 270 (344)
++... -+.+++..+. .. |+|+|.++---.+.-. .. +-.++.+.++++.+.. .+||++-||| +..++.
T Consensus 103 ~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~ 181 (755)
T PRK09517 103 ELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAA 181 (755)
T ss_pred EEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHH
Confidence 44433 4666665432 23 5999998743222111 11 1235667777666521 3999999999 699999
Q ss_pred HHHHcCCCEEEEchHHHH
Q 019244 271 KALALGASGIFIGRPVVY 288 (344)
Q Consensus 271 kalalGAd~V~ig~~~l~ 288 (344)
.+++.||+.|.+.+.++.
T Consensus 182 ~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 182 ELAATGIDGLCVVSAIMA 199 (755)
T ss_pred HHHHcCCCEEEEehHhhC
Confidence 999999999999999874
No 295
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.62 E-value=0.3 Score=44.77 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEEEee----cCHHHHHHHHHcCCcEEEEcc--CCCCCCCCchhhHHHHHHHHHHcc---CCCcEEE
Q 019244 189 KDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v----~~~~~a~~~~~~G~d~I~v~~--~gG~~~~~g~~~~~~l~~i~~~~~---~~~~via 259 (344)
+.+++|++. +.++-+..+ .+.+..+..++. +|.|.+=+ -|.....+-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 467888885 554444443 344666666653 88887642 221112233445555555554432 2567999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
||||+ .+.+.++.++|||.+.+|+.++
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 99998 6678888899999999998854
No 296
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.44 E-value=0.14 Score=48.90 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=60.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka----lalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...... .-.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++..|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 34577899999999776543221111 1234556666667778999986663 56666543 347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 456676776666554
No 297
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.44 E-value=0.22 Score=45.06 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCCcEEEE---e-----e---cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPILVK---G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK---~-----v---~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+++.++++++.+++|++.. - + .+.++++.+.++|+|+|.+...-.... .+....+.+..+++. ..+
T Consensus 44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i 120 (221)
T PRK01130 44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQ 120 (221)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCC
Confidence 3678999999889998722 1 1 235789999999999888764211100 011222344444432 357
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+++. ++.+.+++.++..+|+|.+.+.
T Consensus 121 ~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 121 LLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 7665 6789999999999999999764
No 298
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.41 E-value=0.15 Score=48.36 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=61.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-. -...+.+..+++.+.+++||++.-|-.+-.|.+ .|-++|||++++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 4457789999999977644321111 122345555666667789999866666666664 34558999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 753 456666666666554
No 299
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.38 E-value=0.66 Score=43.86 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH----HHHHHHcCCcEEEEccC------CCCCCCCchh-hHHHHHHHHHHccCCCcE
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED----ARIAVQAGAAGIIVSNH------GARQLDYVPA-TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~----a~~~~~~G~d~I~v~~~------gG~~~~~g~~-~~~~l~~i~~~~~~~~~v 257 (344)
.+...++..+.|+++-.. .++++ ++.+.++|+|+|.+.-+ +|.++...+. ..+.+..+++.+ ++||
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv 157 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV 157 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence 344444445789988765 34444 67788999999998421 1211111111 223455555444 5787
Q ss_pred EE--ecCCCCHHHHHHHH-HcCCCEEEE
Q 019244 258 FL--DGGVRRGTDVFKAL-ALGASGIFI 282 (344)
Q Consensus 258 ia--~GGIr~g~dv~kal-alGAd~V~i 282 (344)
++ +..+....++++.+ .+|||++.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 75 34444566767644 589998865
No 300
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.37 E-value=0.15 Score=48.25 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=60.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~ka----lalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...-... -.+.+..+.+.+.+++|||+.-|- +-.+.++. -.+|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 345778999999997754432211111 234455566666678999997775 66666643 347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 106 ~~~---~~~~i~~~f~~v~~~ 123 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCKS 123 (289)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 456666666665443
No 301
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.13 Score=47.18 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEcc-CCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 210 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.+.|+.-.+.|+..+.+-- .|- ...++-..+++.++.+.. ++||=..|||||-+++.+.+.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 4678888899999887632 111 113355678889998877 799999999999999999999999999999954
No 302
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=95.33 E-value=0.17 Score=45.37 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=62.4
Q ss_pred hcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC---------------------CCC---------chhhHHHHHH
Q 019244 197 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------VPATIMALEE 246 (344)
Q Consensus 197 ~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~---------------------~~~---------g~~~~~~l~~ 246 (344)
++++|+++. ..+.-+|.+-+.-|+.-|..-+.-|+. ++. -..+++.+.+
T Consensus 123 nFkvPFvCG-~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~ 201 (296)
T KOG1606|consen 123 NFKVPFVCG-CRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQ 201 (296)
T ss_pred cCcCceeec-cccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHH
Confidence 457898864 566677777788899999887654431 110 0112334444
Q ss_pred HHHHccCCCcE--EEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~~~~~v--ia~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
..+ -+++|| ++.|||.|+.|++-.+.||+|.|++|+.++.
T Consensus 202 t~q--~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 202 TKQ--LGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHH--cCCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 333 247776 5799999999999999999999999997765
No 303
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.33 E-value=0.19 Score=47.15 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=61.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.|+-|-...... ...+.+..+++...+++||++.-|=.+-.++++ +-.+|||++++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 34577889999999876553222222 223456666666667899998666656665554 3347999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+. ..++++.++++.+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 75 245666666665544
No 304
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.32 E-value=0.28 Score=45.68 Aligned_cols=41 Identities=34% Similarity=0.392 Sum_probs=35.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~ 227 (344)
..+.++++|+.++.||++.+- .++++++.+.++|+|+++|.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 456799999988999999775 56999999999999999985
No 305
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.26 E-value=0.69 Score=43.51 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=53.5
Q ss_pred HHHHHHHh-cCCcEEEEee-cCHHH----HHHHHHcCCcEEEEccCC-----CCCCCCchh-hHHHHHHHHHHccCCCcE
Q 019244 190 DVKWLQTI-TKLPILVKGV-LTAED----ARIAVQAGAAGIIVSNHG-----ARQLDYVPA-TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 190 ~i~~i~~~-~~~PvivK~v-~~~~~----a~~~~~~G~d~I~v~~~g-----G~~~~~g~~-~~~~l~~i~~~~~~~~~v 257 (344)
.++..++. .+.|+++-.. .++++ ++.+.++|+|+|.+.-.. ++.+...+. ..+.+..+++.+ ++||
T Consensus 88 ~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv 165 (289)
T cd02810 88 DIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPL 165 (289)
T ss_pred HHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCE
Confidence 45554444 4789888765 34443 778889999999985321 121111111 234455555554 5777
Q ss_pred EE--ecCCC--CHHHHHHHH-HcCCCEEEEc
Q 019244 258 FL--DGGVR--RGTDVFKAL-ALGASGIFIG 283 (344)
Q Consensus 258 ia--~GGIr--~g~dv~kal-alGAd~V~ig 283 (344)
++ .+++. ...++++++ .+|||++.+.
T Consensus 166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 166 LVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 76 34443 334555554 4899999875
No 306
>PRK06852 aldolase; Validated
Probab=95.18 E-value=0.19 Score=47.97 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=59.4
Q ss_pred HHHhcCCcEEE----Ee--e---cCH----HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 194 LQTITKLPILV----KG--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 194 i~~~~~~Pviv----K~--v---~~~----~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
-.+.|++|+++ ++ + ..+ .-++.+.+.|||.|++--.+ +.+....+.+.++.+.. +++||+.+
T Consensus 162 ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpVvia 236 (304)
T PRK06852 162 EAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKVVCA 236 (304)
T ss_pred HHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcEEEe
Confidence 33457999886 11 1 122 22688999999999995321 00012346677777654 37999999
Q ss_pred cCCCCH-HHHH----HHHH-cCCCEEEEchHHHH
Q 019244 261 GGVRRG-TDVF----KALA-LGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g-~dv~----kala-lGAd~V~ig~~~l~ 288 (344)
||=... .|++ .++. .||..|.+||-++.
T Consensus 237 GG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 237 GGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 998853 3344 4666 89999999997764
No 307
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.18 E-value=0.23 Score=47.83 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCCcHHH-HHHHHHh---cCCcEEEEeecC---HHHHHHHHHcC--CcEEEEccCCCCCCCCchhhHHHHHHHHHHccC
Q 019244 183 DRSLSWKD-VKWLQTI---TKLPILVKGVLT---AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 183 ~~~~~~~~-i~~i~~~---~~~PvivK~v~~---~~~a~~~~~~G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
+..++.+. .+++++. ...-+.+-...+ .+-+..+.++| +|+|+++..-|+ ....++.+..+++..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP- 149 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-
Confidence 45566554 5555442 223333322223 35578888885 999999874342 2345677888877663
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
. +.+..|.|-|++++..++.+|||+|-+|
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3 4555588999999999999999999776
No 308
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.18 E-value=0.18 Score=48.24 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=59.6
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH----HcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kal----alGAd~V~ig~~~l~ 288 (344)
..+++.|+++|.+.|+-|-...-.. .-.+.+..+++.+.+++|||+.-|=.+-.|+++.. .+|||++++-.|+++
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 4577899999999776443211111 12344555666667789999866655556665433 479999999999876
Q ss_pred HhhhcChHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~e 308 (344)
.. .++++.++++.+.+.
T Consensus 116 ~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 116 PL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CC---CHHHHHHHHHHHHHh
Confidence 53 356666666665543
No 309
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.15 E-value=0.33 Score=44.75 Aligned_cols=114 Identities=23% Similarity=0.254 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCC-cc----ccCCHH----HHHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM----VYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~----~~~d~~----~~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++... .. +..|+. ...+.+++++.. ||..+-+..|.+....+-.+..-.+-.|.|
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg------ 152 (250)
T PRK00208 79 VRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG------ 152 (250)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC------
Confidence 456776666543 33 223322 123456677766 999887777877776554433100000100
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.. +.+-.+++.++.+++..++||++-+ +.+++++.++.+.|+|++.|.+
T Consensus 153 -----------------~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 153 -----------------APIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred -----------------cCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 00110 1112246779999998889999876 5799999999999999999854
No 310
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.23 Score=47.42 Aligned_cols=92 Identities=25% Similarity=0.390 Sum_probs=58.8
Q ss_pred HHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHHH
Q 019244 214 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 288 (344)
Q Consensus 214 ~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l~ 288 (344)
+.+++.|+|+|.+.|+.|-...-.. .-.+.+..+++.+.+++|||+.-|=.+-.+++ .|-.+|||++++-.|+++
T Consensus 32 ~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 4578999999999876553211111 12345566666777789999955555445544 334489999999999987
Q ss_pred HhhhcChHHHHHHHHHHHHH
Q 019244 289 SLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 289 ~~~~~G~~~v~~~l~~l~~e 308 (344)
.. .++++.+++..+.+.
T Consensus 112 k~---~~~gl~~hf~~ia~a 128 (299)
T COG0329 112 KP---SQEGLYAHFKAIAEA 128 (299)
T ss_pred CC---ChHHHHHHHHHHHHh
Confidence 53 245555555544433
No 311
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.04 E-value=0.43 Score=43.12 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcCCcEEE---Eee--------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pviv---K~v--------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
+.+.++++++..++|++. |.. .+.++++.+.++|+|+|.+.....+ ...+....+.+..+++.. ++
T Consensus 48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~ 124 (219)
T cd04729 48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NC 124 (219)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CC
Confidence 346788888878999863 222 1346889999999998877532111 001112233444444432 56
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+++. ++.|.+++.++..+|+|.+.+.
T Consensus 125 ~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 125 LLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred eEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 7666 6899999999999999998653
No 312
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.01 E-value=0.12 Score=52.49 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.++.+.++|+|.|.++.+-|. +...++.+.++++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999865442 4556778888887663 576666 89999999999999999997743
No 313
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=94.95 E-value=0.51 Score=43.93 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCch-------------hhHHHHHHHHHHc---cC
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP-------------ATIMALEEVVKAT---QG 253 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~-------------~~~~~l~~i~~~~---~~ 253 (344)
.++.+.+. ++++-+=.+.|.+.+..+.++|+++|... -||-.+++. +.+..+.++.+.. ..
T Consensus 131 A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispf--vgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~ 207 (252)
T cd00439 131 AIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPF--VSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFK 207 (252)
T ss_pred HHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEe--ccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCC
Confidence 44555443 89998888999999999999999988764 233222222 4444444554433 23
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHh
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 290 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~ 290 (344)
+..|++. .+|+..++.+++ |+|.|-+.-.++..+
T Consensus 208 ~tkiL~A-S~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 208 KQRVLWA-SFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CCeEEEE-eeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 5666654 499999998766 999999988887754
No 314
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.94 E-value=0.22 Score=47.52 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC--CcEEEEeecCHH----HHHHHHHc---CCcEEEEccCCCCCCCCchhhHHHHHHHHHH---cc-CCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLTAE----DARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQ-GRI 255 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~~~----~a~~~~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~-~~~ 255 (344)
+.++.+++..+ .|+++ ++.+.+ ++..+.++ ++|.|-++|.+++ .| .+.+.+.+++++ .+ +++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RG-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CC-CHHHHHHHHHHHHHhCCCCCe
Confidence 35777777765 45544 454443 56666666 4899999986532 11 123334444443 32 468
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|++|||| +...+.+....|+|.+.+|+....
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 689999988999999999987643
No 315
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.91 E-value=0.24 Score=46.22 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++.+++.+++|+++... .++++++.+.+. +|+++|.+
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34799999988999999764 689999999986 99999953
No 316
>PRK14057 epimerase; Provisional
Probab=94.90 E-value=0.52 Score=43.84 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCc-------EEEEee----cCHHHHHHHHHcCCcEEEEcc----CCCCCCCCchhhHHHHHHHHHHcc-
Q 019244 189 KDVKWLQTITKLP-------ILVKGV----LTAEDARIAVQAGAAGIIVSN----HGARQLDYVPATIMALEEVVKATQ- 252 (344)
Q Consensus 189 ~~i~~i~~~~~~P-------vivK~v----~~~~~a~~~~~~G~d~I~v~~----~gG~~~~~g~~~~~~l~~i~~~~~- 252 (344)
..+++||+. +++ +-+..+ .+.+..+..++. +|.|.+=. .||. ..-+..++-+.++++...
T Consensus 114 ~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ--~Fi~~~l~KI~~lr~~~~~ 189 (254)
T PRK14057 114 HTLSWLGQQ-TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSK--MRSSDLHERVAQLLCLLGD 189 (254)
T ss_pred HHHHHHHHc-CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCch--hccHHHHHHHHHHHHHHHh
Confidence 467888876 432 222222 345667766664 88877642 2332 233445555555554432
Q ss_pred --CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 253 --GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 253 --~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.++.|-+||||. .+.+.++.++|||.+.+|+.++
T Consensus 190 ~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 190 KREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred cCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 257799999998 5678888999999999998764
No 317
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=94.87 E-value=0.14 Score=46.66 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH--cCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala--lGAd~V~ig~~~l 287 (344)
.+.|+...+.|+|.+.+..--+. ...+...+.+.++.+. +|+...|||||.+|+.+++. .||+-|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 46678888999999988542221 1234567778887763 58999999999999998865 2799999999764
No 318
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.83 E-value=0.15 Score=51.74 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+-++.+.++|+|.|+++.+-|+. ....+.+.++++.. .++|||+ |.+-|.+.+..++.+|||+|-+|
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 356888999999999998744542 34567778887654 3799999 76999999999999999998755
No 319
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.82 E-value=0.11 Score=46.66 Aligned_cols=80 Identities=29% Similarity=0.289 Sum_probs=57.3
Q ss_pred cHHHHHHHHHhcC-CcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
..+.|+.+++.++ .-+....++++++++++.++|+++|+--|. +.+.+..+. ..++|++ =|+-|
T Consensus 51 a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~----------~~ev~~~a~---~~~ip~~--PG~~T 115 (211)
T COG0800 51 ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL----------NPEVAKAAN---RYGIPYI--PGVAT 115 (211)
T ss_pred HHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHH---hCCCccc--CCCCC
Confidence 3467999999885 444455579999999999999999953221 223333222 2256665 48999
Q ss_pred HHHHHHHHHcCCCEEE
Q 019244 266 GTDVFKALALGASGIF 281 (344)
Q Consensus 266 g~dv~kalalGAd~V~ 281 (344)
+.++..|+.+|++.+=
T Consensus 116 ptEi~~Ale~G~~~lK 131 (211)
T COG0800 116 PTEIMAALELGASALK 131 (211)
T ss_pred HHHHHHHHHcChhhee
Confidence 9999999999998763
No 320
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.81 E-value=0.3 Score=46.34 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHcC-CcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 213 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~G-~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
++.+++.| +++|.+.|+-|-...-... -.+.+..+++...+++||++.=|=.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45678899 9999998765532211121 22345555666667899988644344555543 344799999999998
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 7753 34666666666544
No 321
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.80 E-value=0.35 Score=46.76 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCcEEEEee-cCH----HHHHHHHHcCCcEEEEcc---CCCCCCCCc-h--hhHHHHHHHHHHccCCCcE
Q 019244 189 KDVKWLQTITKLPILVKGV-LTA----EDARIAVQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~----~~a~~~~~~G~d~I~v~~---~gG~~~~~g-~--~~~~~l~~i~~~~~~~~~v 257 (344)
+.++.+++..++|++++.. .+. +.++.+.++|+|+|.+-- .+.....+. . ...+.+..+++.. ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 3566666667899999985 344 346778889999999831 111111111 1 1234556666554 6899
Q ss_pred EEe--cCCCCHHHHHHHHH-cCCCEEEEchH
Q 019244 258 FLD--GGVRRGTDVFKALA-LGASGIFIGRP 285 (344)
Q Consensus 258 ia~--GGIr~g~dv~kala-lGAd~V~ig~~ 285 (344)
++- +++.+..++++++. .|||+|.+...
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 874 45556678888765 89999877543
No 322
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.76 E-value=0.28 Score=46.62 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=59.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+|+|.+.|+-|-...-... -.+.+..+.+.+.+++||++.=| .+-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 345778999999997765532222222 22345556666677899998656 35555543 3347999999999988
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 356666666666554
No 323
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.75 E-value=0.42 Score=46.03 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=57.4
Q ss_pred CcEEEEeecCHH---HHHHHHHcC--CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 019244 200 LPILVKGVLTAE---DARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 274 (344)
Q Consensus 200 ~PvivK~v~~~~---~a~~~~~~G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kala 274 (344)
+++.+-...+++ .+..+.++| +|.|+++..-|+ ....++.+.++++.. ..|.+..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 444433334554 467788999 799999873332 234567788887766 568888899999999999999
Q ss_pred cCCCEEEEc
Q 019244 275 LGASGIFIG 283 (344)
Q Consensus 275 lGAd~V~ig 283 (344)
.|||+|-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
No 324
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.34 Score=43.44 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhcCCcEE--EEee---------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCC
Q 019244 187 SWKDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 255 (344)
Q Consensus 187 ~~~~i~~i~~~~~~Pvi--vK~v---------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~ 255 (344)
..++|+.+++.+++|+| +|-- .+.++...+.++|++.|-++.+-.. ...| +++.+ .+..+ .-
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~-RP~~--~~~~~---i~~~k-~~ 126 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRP-RPDG--DLEEL---IARIK-YP 126 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCC-CCcc--hHHHH---HHHhh-cC
Confidence 56789999999999985 4431 4568999999999999998764321 1112 33322 22221 33
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEE
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~i 282 (344)
..++.-.+.|.+|..-|..+|+|.|+-
T Consensus 127 ~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred CcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 456667789999999999999999753
No 325
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.71 E-value=0.41 Score=44.37 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...++||.+|-|-.-+.. -..+++.|..+++.+ ++||+.-..|-+..++.++.++|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~----F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSY----FGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCc----CCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 5578899999999988653211 112467788888776 7999999999999999999999999997655443
No 326
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.69 E-value=0.2 Score=48.46 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=71.1
Q ss_pred cHHHHHHHHHh-cCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTI-TKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~-~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
++++++.+|+. +++||+.|. +.++.+...+..+|||+|-+.-.- + ....+..|.+.+..+ .+.+++. |+
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai---L--~~~~L~~l~~~A~~L--Gme~LVE--VH 238 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV---L--PDLDIKYMLKICKSL--GMAALIE--VH 238 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh---C--CHHHHHHHHHHHHHc--CCeEEEE--eC
Confidence 68899999998 899999998 589999999999999999763210 1 123455566666555 5666664 89
Q ss_pred CHHHHHHHHHc-CCCEEEEchHH
Q 019244 265 RGTDVFKALAL-GASGIFIGRPV 286 (344)
Q Consensus 265 ~g~dv~kalal-GAd~V~ig~~~ 286 (344)
+..++-+++.+ ||+.++|-.-=
T Consensus 239 ~~~ElerAl~~~ga~iIGINNRd 261 (338)
T PLN02460 239 DEREMDRVLGIEGVELIGINNRS 261 (338)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCC
Confidence 99999999998 99999987643
No 327
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.66 E-value=0.38 Score=45.16 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCcEEEEe---ecCHHHHHHHHHcC-CcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEe
Q 019244 189 KDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 260 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~---v~~~~~a~~~~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~ 260 (344)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|-+++.... ...+....+. ..+.+ ..++.|+++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPE---ELDPAVLILK-ARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChH---HHHHHHHHHH-HHHhhhhcCCCceEEEEe
Confidence 457777776543344443 35689999999999 999998874321 1112222221 21111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 261 GGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 261 GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|||. .+.+......|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 88888888899999999987753
No 328
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.60 E-value=0.15 Score=45.94 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...++|+++|.+-.-.+. .. ...+.+..+++.+ ++||+.-|+|++..++-.++.+|||.|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~---g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQ---GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cC---CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 36689999999999988532111 11 1235566666655 7999999999999999999999999999887543
No 329
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.57 E-value=0.35 Score=45.80 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=59.6
Q ss_pred HHHHHH-cCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 213 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~-~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
++.+.+ .|+++|.+.|+-|-...-.. .-...+..+++...+++|||+.=|=.+-.|+++ +-.+|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 345778 99999999876553221111 123445556666677899999655555666643 346899999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~ 307 (344)
++.. .++++.++++.+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 24555555555544
No 330
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.57 E-value=0.39 Score=46.30 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred HHHHHHHH--cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+-+..+.+ +|+|+|+++..-|+ ....++.+.++++..+ +++||+ |.|-|++-+...+..|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44677777 59999999874332 2345677888887764 677665 99999999888888999998544
No 331
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.46 E-value=0.21 Score=48.22 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHcCC--cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 211 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 211 ~~a~~~~~~G~--d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+.+..+.++|+ |.|.++..-| .+....+.+.++++..+ ++||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788999965 9999975323 22445567888877652 466555 66889999999999999998877
No 332
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.39 E-value=0.42 Score=45.06 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=59.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
+..+.+.|+++|.+.|+-|-...-... -.+.+..+.+.+.+++||++.=|=.+-.++++ |-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 345778999999997765532221221 23345556666667899998655555666553 3347999999999998
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 105 ~~~---~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAEE 122 (285)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 743 345666666555443
No 333
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.35 E-value=0.32 Score=45.86 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHH
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 286 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~ 286 (344)
.++.+.+.|++++.+.++.|-...-... -.+.+..+.+.+++++||++.=|=.+-.++++ +-.+|||++++..|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 3456789999999998765532211111 23345555666667899998555545565553 334899999999998
Q ss_pred HHHhhhcChHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLR 306 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~ 306 (344)
++.. ..+++.++++.+.
T Consensus 107 ~~~~---s~~~l~~y~~~ia 123 (289)
T PF00701_consen 107 YFKP---SQEELIDYFRAIA 123 (289)
T ss_dssp SSSC---CHHHHHHHHHHHH
T ss_pred cccc---hhhHHHHHHHHHH
Confidence 7642 3455555555443
No 334
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.32 E-value=0.32 Score=49.56 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
.+.++.+.++|+|.|++...-|+. ...++.+.++++.. .++||++ |++-|.+++..++.+|||+|.+|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 477899999999999887532321 23456677776654 3688888 99999999999999999999775
No 335
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.30 E-value=0.42 Score=45.20 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHHHHHc-CCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHH
Q 019244 213 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPV 286 (344)
Q Consensus 213 a~~~~~~-G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~ 286 (344)
++.+.+. |+++|.+.|+-|-...-.. .-.+.+..+.+.+.+++|||+.=|=.+-.|++ .+-.+|||++++..|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4557788 9999999876553221111 12334555566666789999844333444444 3345899999999998
Q ss_pred HHHhhhcChHHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~e 308 (344)
++.. .++++.++++.+.+.
T Consensus 107 y~~~---~~~~i~~~~~~v~~a 125 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIAA 125 (288)
T ss_pred CCCC---CHHHHHHHHHHHHHh
Confidence 7642 456666666666543
No 336
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=94.23 E-value=0.57 Score=44.95 Aligned_cols=101 Identities=13% Similarity=0.190 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|... -||-.|| .-+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 676555444332 78888888899999999999999888653 3443333 113445555555543
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+.+..|+ ...+|+..++.. .+|+|.+-+.-.++..+..
T Consensus 212 ~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 212 KKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred HHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 2244444 566999999987 5899999999888876653
No 337
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.21 E-value=0.79 Score=42.83 Aligned_cols=39 Identities=33% Similarity=0.421 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
-+.++++|+.+++|+.+.- +.++++++++.++ +|+++|.
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 3569999999999999986 5889999999999 9999994
No 338
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.21 E-value=0.5 Score=44.40 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|++++.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+..++++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999997765432221111 22345555566666899987544445666554 3447999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34566666665554
No 339
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.10 E-value=0.24 Score=45.99 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=69.2
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+++.++.+++.+.+||..|- +.++.+...+..+|+|+|-+--.- + ....+..|.+....+ .+.++.. +++
T Consensus 95 s~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~---L--~~~~l~el~~~A~~L--Gm~~LVE--Vh~ 165 (254)
T COG0134 95 SFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA---L--DDEQLEELVDRAHEL--GMEVLVE--VHN 165 (254)
T ss_pred CHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHh---c--CHHHHHHHHHHHHHc--CCeeEEE--ECC
Confidence 67899999999999999998 478999999999999998652100 0 111233344444434 5666664 899
Q ss_pred HHHHHHHHHcCCCEEEEchHHHH
Q 019244 266 GTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.+++.+|+.+||+.++|-.-=|.
T Consensus 166 ~eEl~rAl~~ga~iIGINnRdL~ 188 (254)
T COG0134 166 EEELERALKLGAKIIGINNRDLT 188 (254)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcc
Confidence 99999999999999999865444
No 340
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=94.10 E-value=1.3 Score=41.19 Aligned_cols=94 Identities=28% Similarity=0.432 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCc-hh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g-~~--~~~~l~~i~~~~~~~~~v 257 (344)
+++.++++-+ .++||++|--+ |.++ |+-....|-..|++.-.|=|.++.. +- .+.+++-+++.. .+||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 4555666644 48999999763 5555 6677788988888887776655542 22 334566665544 7999
Q ss_pred EEec----CCCCHHH--HHHHHHcCCCEEEEc
Q 019244 258 FLDG----GVRRGTD--VFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~G----GIr~g~d--v~kalalGAd~V~ig 283 (344)
|+|= |=|+... +..|+|.|||.+|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9953 4343332 235678999999975
No 341
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.04 E-value=0.63 Score=42.75 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..|+.|+.+++.++ +|||.=+ +.+.+++....++|||+|-+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 9987644 689999999999999999885
No 342
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.01 E-value=0.55 Score=43.43 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
-|+..+-+--+...+.||.++-.+-|.|+...|-.|.--..-+|.+-... .+.+-.
T Consensus 121 PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG------------------------Sg~Gl~ 176 (267)
T CHL00162 121 PDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG------------------------SGQGLQ 176 (267)
T ss_pred CChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc------------------------CCCCCC
Confidence 34444333345555679998888888887766543321000012111000 011122
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
+...|+-|++..++||++-. +.+++|+..+.+.|+|++-+.
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 55679999998899998864 589999999999999999774
No 343
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.92 E-value=0.17 Score=46.27 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH-----------HHHHHHHcCCCE
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 279 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~-----------dv~kalalGAd~ 279 (344)
..++.+.+.|+|+++++.. .+..+++..+ .--++.++||+- . .+-.++..||+.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~~-~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIRP-AGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcCC-CCCCcchHHHHhCHHHHHHcCCCE
Confidence 3456678899999988531 1344554443 334577899983 3 467788899999
Q ss_pred EEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 280 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 280 V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
+.+||+++.+ +......+.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998753 222334555555553
No 344
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.88 E-value=0.57 Score=42.90 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCC-cc-----------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAGT-IM-----------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g~-~~-----------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+. .. ++-|+-.+-+-.+...+-||..+-.+-|.|++.+|-.|.--..-+|.+-...
T Consensus 79 v~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIG-- 156 (247)
T PF05690_consen 79 VRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIG-- 156 (247)
T ss_dssp HHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTT--
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccc--
Confidence 467888887753 33 2234443333345555689999888888787765543321000011110000
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.+-.+...++.|++..++||||-. +-++.+|..+.+.|+|+|-+-
T Consensus 157 ----------------------Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 157 ----------------------SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp ----------------------T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred ----------------------cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 01112245679999999999999864 578999999999999999874
No 345
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.87 E-value=0.78 Score=39.94 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=52.8
Q ss_pred HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC-CCcEEEecCCCC--------HHHHHHHHHcCCCEEEE
Q 019244 212 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFI 282 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~-~~~via~GGIr~--------g~dv~kalalGAd~V~i 282 (344)
.++.+.+.|+++|.+.+ ..+..+++...+ ++||++.=|-.+ -..+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 45678889999998853 455666666666 799887333332 34455677799999999
Q ss_pred chHHHHHhhhcChHHHHHHHHHHHH
Q 019244 283 GRPVVYSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 283 g~~~l~~~~~~G~~~v~~~l~~l~~ 307 (344)
..|+.+... ..++++.++++.+.+
T Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~i~~ 108 (201)
T cd00945 85 VINIGSLKE-GDWEEVLEEIAAVVE 108 (201)
T ss_pred eccHHHHhC-CCHHHHHHHHHHHHH
Confidence 888765431 013444455444444
No 346
>PTZ00411 transaldolase-like protein; Provisional
Probab=93.86 E-value=0.83 Score=44.21 Aligned_cols=102 Identities=15% Similarity=0.268 Sum_probs=70.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|...|..+.++|++.|... -||-.|| +.+.+..+.++.+..
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 676554444332 78888888899999999999999988653 3443332 334455566665544
Q ss_pred c--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 Q--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ~--~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+ +--..|....+|+..++.. .+|+|.+-+.-.++..+..
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 2 2234555667999999987 3899999998888776643
No 347
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.84 E-value=0.52 Score=43.56 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcEEEEeec---CH----HHHHHHHHcCCcEEEEccC-----CCCCCC-Cchhh---HHHHHHHHHHccC
Q 019244 190 DVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSNH-----GARQLD-YVPAT---IMALEEVVKATQG 253 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~---~~----~~a~~~~~~G~d~I~v~~~-----gG~~~~-~g~~~---~~~l~~i~~~~~~ 253 (344)
.++.|.....+|+++-+-. +. +.++++.++|+++|.+-.. .|+.-. .-.+. .+.+..++++..+
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 60 AVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 4677777778998876543 33 4467888999999999321 111000 01122 2334444444444
Q ss_pred --CCcEEEe--------cCCCCHHHHHHHH-HcCCCEEEEchHH
Q 019244 254 --RIPVFLD--------GGVRRGTDVFKAL-ALGASGIFIGRPV 286 (344)
Q Consensus 254 --~~~via~--------GGIr~g~dv~kal-alGAd~V~ig~~~ 286 (344)
+++|++= .|+.....-+++. .+|||++++-.+.
T Consensus 140 ~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 140 LPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred cCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 6888885 3444444434443 4899999987553
No 348
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=93.84 E-value=1.5 Score=40.43 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=80.0
Q ss_pred cHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHH---HccCC-CcEEE
Q 019244 187 SWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGR-IPVFL 259 (344)
Q Consensus 187 ~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~---~~~~~-~~via 259 (344)
+|+- ++.+.+. ++++-+=.+.|...|..+.++|++.|-. .-||-.||+......+.++++ ..... ..+++
T Consensus 101 T~eGl~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~v 177 (239)
T COG0176 101 TWEGLKAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLV 177 (239)
T ss_pred CHHHHHHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEE
Confidence 5654 4444443 6777777788999999999999887754 557767776554444444443 33223 45555
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcC--------hHHHHHHHHHHH
Q 019244 260 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--------EKGVRRVLEMLR 306 (344)
Q Consensus 260 ~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G--------~~~v~~~l~~l~ 306 (344)
. ++++..++..+..+|||.+-+.-.++..+..++ .+|++.+.+.|.
T Consensus 178 a-s~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D~~ 231 (239)
T COG0176 178 A-SARFPNHVYIAALAGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKDWE 231 (239)
T ss_pred e-cCccHHHHHHHHHhCCCcccCCHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 4 599999999999999999999988888776553 245555554443
No 349
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.76 E-value=0.62 Score=44.03 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=58.0
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchh-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+++|.+.++-|-...-... -...+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 445778999999997654432222222 23345556666667899987444334455543 2347999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLREE 308 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~e 308 (344)
+.. .++++.++++.+.+.
T Consensus 108 ~~~---~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAEA 125 (292)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 456666666665443
No 350
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.67 E-value=0.42 Score=43.55 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC
Q 019244 107 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 186 (344)
Q Consensus 107 ~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (344)
-|+-.+-+-.++..+.||..+..+-|.|++.+|-.+.--.--+|.+-... .+-+-.
T Consensus 114 PD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG------------------------Sg~G~~ 169 (262)
T COG2022 114 PDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG------------------------SGLGLQ 169 (262)
T ss_pred CChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc------------------------CCcCcC
Confidence 34443333345555689999888888888876654321000012111100 011122
Q ss_pred cHHHHHHHHHhcCCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 187 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
+-..++-|++..++||||- ++-++.+|..+.+.|+|+|-+-
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 4457888999999999986 4578999999999999999774
No 351
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.52 E-value=0.076 Score=46.57 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 188 WKDVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
...++..++. ++..+-+.- .+.+. .+.+.+..+|+|-+= .| .. ...+.++.+.+ ++|||+.|=
T Consensus 81 ~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil--Pg-----~~--p~vi~~i~~~~--~~PiIAGGL 148 (175)
T PF04309_consen 81 SNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL--PG-----VM--PKVIKKIREET--NIPIIAGGL 148 (175)
T ss_dssp HHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE--SC-----CH--HHHHCCCCCCC--SS-EEEESS
T ss_pred HHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc--hH-----HH--HHHHHHHHHhc--CCCEEeecc
Confidence 3456666653 766666653 23344 456778999999882 11 11 12333333322 699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
|++-+|+.++|+.||.+|..+.+-||
T Consensus 149 I~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 149 IRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp --SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred cCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 99999999999999999998877665
No 352
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.43 E-value=0.86 Score=40.27 Aligned_cols=87 Identities=25% Similarity=0.202 Sum_probs=59.6
Q ss_pred HHHHHHHHHhc-CCcEEEEe-ecCH--HHHHHHHHcCCcEEEEccCCCCCCCCchhhHH-HHHHHHHHccCCCcEEEe-c
Q 019244 188 WKDVKWLQTIT-KLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD-G 261 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~-v~~~--~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~-~l~~i~~~~~~~~~via~-G 261 (344)
.+.++++++.. ++|+++-. +.++ ..++.+.++|+|+|.+....+ +.... .+..+++ ..++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~---~g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK---YGKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH---cCCeEEEEEe
Confidence 56789998874 78887732 2233 357889999999999843211 11222 2333322 25777775 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 019244 262 GVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig 283 (344)
+..|..++.+++..|+|.|.+.
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999885
No 353
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.41 E-value=0.31 Score=47.32 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHHHHH--cCCcEEEEccCCCC----CCCCc------hhhHHHHHHHHHHccCCCcEEE-ecCCCCHHHHHH----HHHc
Q 019244 213 ARIAVQ--AGAAGIIVSNHGAR----QLDYV------PATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 275 (344)
Q Consensus 213 a~~~~~--~G~d~I~v~~~gG~----~~~~g------~~~~~~l~~i~~~~~~~~~via-~GGIr~g~dv~k----alal 275 (344)
++.+.+ .|+|.+++--.+.- ..+.+ ....+.+.++.+.. .+|++. +||+ +..++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 456664 99999999532210 01110 11124455655544 577666 7787 6666654 5557
Q ss_pred CC--CEEEEchHHHHH
Q 019244 276 GA--SGIFIGRPVVYS 289 (344)
Q Consensus 276 GA--d~V~ig~~~l~~ 289 (344)
|| +.|.+||.....
T Consensus 267 Ga~f~Gvl~GRniwq~ 282 (340)
T PRK12858 267 GADFSGVLCGRATWQD 282 (340)
T ss_pred CCCccchhhhHHHHhh
Confidence 99 999999987653
No 354
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=93.22 E-value=0.85 Score=44.20 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHcCCcEEEEccCC---C-------CCC----C--CchhhHHHHHHHHHHc-cCCCcEEEecCCCCHH-H----HH
Q 019244 213 ARIAVQAGAAGIIVSNHG---A-------RQL----D--YVPATIMALEEVVKAT-QGRIPVFLDGGVRRGT-D----VF 270 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~g---G-------~~~----~--~g~~~~~~l~~i~~~~-~~~~~via~GGIr~g~-d----v~ 270 (344)
++.+.+.|||.|++--.+ + ... + ......+.++.+.+.+ .+++||+.+||=.... | +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 678999999999996432 1 000 0 0112345566666554 3479999999998532 3 33
Q ss_pred HH---HHcCCCEEEEchHHHH
Q 019244 271 KA---LALGASGIFIGRPVVY 288 (344)
Q Consensus 271 ka---lalGAd~V~ig~~~l~ 288 (344)
.+ +..||..+.+||-++.
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHhhhcCCcchhhchhhhc
Confidence 56 7789999999998765
No 355
>PLN02979 glycolate oxidase
Probab=93.18 E-value=0.81 Score=44.76 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC-----------------CC----
Q 019244 187 SWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ-----------------LD---- 235 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~-----------------~~---- 235 (344)
++|+| .+..+.|.+.+.- .+.+..+++.++|++++++.- .|-|. +.
T Consensus 111 slEeI---a~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEV---ASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHH---HhccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 44554 4434567888874 234567889999999998842 11110 00
Q ss_pred -------------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 -------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 -------------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0112456677777655 799888 558899999999999999999875
No 356
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.14 E-value=0.94 Score=40.91 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEeecCH---HHHHHHHHcCCcEEEEccC-----CCCCCCCchhhHHHHHHHHHHccC
Q 019244 182 IDRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 182 ~~~~~~~~~i~~i~~~~~~PvivK~v~~~---~~a~~~~~~G~d~I~v~~~-----gG~~~~~g~~~~~~l~~i~~~~~~ 253 (344)
.|++.+.+.++.+++..++|||--...+. .........-+|.+.++.. ||+. -.-+|..+... +.
T Consensus 81 lHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG---~~fDW~~l~~~----~~ 153 (208)
T COG0135 81 LHGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTG---QTFDWNLLPKL----RL 153 (208)
T ss_pred ECCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCC---cEECHHHhccc----cc
Confidence 45667889999999988888873333332 2445555667899999874 5542 12234445443 22
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCC-CEEEEchHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALALGA-SGIFIGRPV 286 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kalalGA-d~V~ig~~~ 286 (344)
..|++..||+. ++++.+|++++. .+|=+.+.+
T Consensus 154 ~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 154 SKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred cCCEEEECCCC-HHHHHHHHHhcCCceEEecccc
Confidence 67899999996 999999999987 777777644
No 357
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.13 E-value=1.3 Score=41.28 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=58.4
Q ss_pred HHHhcCCcEEE------Eee-----cCHHH----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 194 LQTITKLPILV------KGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 194 i~~~~~~Pviv------K~v-----~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
-...+++|+++ |.+ .+++. ++.+.+.|+|.|++.-.| ..+...++.+.+ .+||+
T Consensus 138 ~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVv 206 (265)
T COG1830 138 DAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVV 206 (265)
T ss_pred HHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEE
Confidence 33456899887 112 22222 568899999999985322 226677777777 49999
Q ss_pred EecCCCC-HHH-----HHHHHHcCCCEEEEchHHHH
Q 019244 259 LDGGVRR-GTD-----VFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 259 a~GGIr~-g~d-----v~kalalGAd~V~ig~~~l~ 288 (344)
.+||=.. ..+ +..++..||..+.+||-++.
T Consensus 207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999988 322 23456689999999998765
No 358
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.05 E-value=2.8 Score=38.66 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=33.8
Q ss_pred HHHHHHHHHhc-CCcEEEEeec-CHHHHHHHHHcCCcEEEEc
Q 019244 188 WKDVKWLQTIT-KLPILVKGVL-TAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 188 ~~~i~~i~~~~-~~PvivK~v~-~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++|+.. +.|+++-+.. ++++++.+.++|+|+++++
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 34688898887 5898887754 9999999999999999985
No 359
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=93.04 E-value=1.4 Score=41.86 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 188 p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 188 PNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 456889999999999999999886 567899999999999998853
No 360
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.02 E-value=0.17 Score=46.07 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred cCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 219 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 219 ~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|...+.+--.||. ..|...+.+..+ + ...++|.-|||||++.+.+...+|||.+.+|+.+..
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v---~-~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRV---L-SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHh---h-ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 45566665433332 223344444433 2 356999999999999998888889999999997754
No 361
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.85 E-value=1.5 Score=38.76 Aligned_cols=79 Identities=29% Similarity=0.279 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 189 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 189 ~~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.++.+++..+. -+....+++.++++.+.++|+|+|.+. |- +++ +.++++.. +++.+. | ..|..
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~~------~~~----~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTP-HV------DPE----LIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECC-CC------CHH----HHHHHHHc--CCCEEc-C-cCCHH
Confidence 346666654432 122334577899999999999999652 21 122 12233332 345443 4 99999
Q ss_pred HHHHHHHcCCCEEEE
Q 019244 268 DVFKALALGASGIFI 282 (344)
Q Consensus 268 dv~kalalGAd~V~i 282 (344)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999987
No 362
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=92.81 E-value=2.9 Score=39.61 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4788887755 58999998874 4432 2333 457788998877 7999998876666 67778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 00 1123344456777777888888764
No 363
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=92.78 E-value=1 Score=41.94 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred HHHHHHHhcCC-cEEEEeecCHHHHHHHHHcCCcEEEEcc---CCCCC-CCCchh---hHHHHHHHHHH---ccCCCcEE
Q 019244 190 DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVKA---TQGRIPVF 258 (344)
Q Consensus 190 ~i~~i~~~~~~-PvivK~v~~~~~a~~~~~~G~d~I~v~~---~gG~~-~~~g~~---~~~~l~~i~~~---~~~~~~vi 258 (344)
+++.|+..-.. =+-+--+.++++|++..++|+|.|++.- .||+. .....+ ..+.+.++.++ +++++-++
T Consensus 139 EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l 218 (268)
T PF09370_consen 139 EVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVL 218 (268)
T ss_dssp HHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEE
T ss_pred HHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 35555544321 1223345799999999999999998842 23321 111221 12223333332 33454444
Q ss_pred E-ecCCCCHHHHHHHHHc--CCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHH
Q 019244 259 L-DGGVRRGTDVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 310 (344)
Q Consensus 259 a-~GGIr~g~dv~kalal--GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~ 310 (344)
. -|-|.+++|+...+.. |++...-++.+=. -.+++.+....++++
T Consensus 219 ~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ER-------lP~E~ai~~~~~~FK 266 (268)
T PF09370_consen 219 CHGGPIATPEDAQYVLRNTKGIHGFIGASSMER-------LPVERAITETVRAFK 266 (268)
T ss_dssp EECTTB-SHHHHHHHHHH-TTEEEEEESTTTTH-------HHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHhcCCCCCEEecccchhh-------ccHHHHHHHHHHHhh
Confidence 4 5569999999999884 5677766665421 234445555555544
No 364
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.65 E-value=1.5 Score=43.35 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=67.5
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.|..+.++|++.|... -||-.|| | -|.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 576555544332 78888888899999999999999888653 3443221 1 12444555555544
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ~---~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+ .+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2 2344544 55999999987 489999998877766543
No 365
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.63 E-value=1.4 Score=41.93 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcEEEEeec--CHH----HHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 191 VKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~--~~~----~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+.+++..+.|+++.... +++ .++.+.+.|+++|.+.-..- .......++.+.++++.. ++||++- ++.
T Consensus 107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p--~~~~~~~~~~i~~l~~~~--~~pvivK-~v~ 181 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP--VLGRRLTWDDLAWLRSQW--KGPLILK-GIL 181 (299)
T ss_pred HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence 444554445788887652 333 45667889999998842110 001113456778887766 5888885 589
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 019244 265 RGTDVFKALALGASGIFIG 283 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig 283 (344)
+..++.++..+|||+|.+.
T Consensus 182 s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 182 TPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999999884
No 366
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.48 E-value=1.7 Score=41.09 Aligned_cols=45 Identities=18% Similarity=0.464 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-+++
T Consensus 185 p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 185 PKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 467899999999999999999886 567889999999999998753
No 367
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.46 E-value=1.1 Score=43.97 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=61.7
Q ss_pred HHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCCCC-------------------------
Q 019244 191 VKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQLD------------------------- 235 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~~~------------------------- 235 (344)
+++|.+..+.|.+.+.- .+.+..+++.++|+.++++.- .|-|..|
T Consensus 113 lEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 192 (367)
T PLN02493 113 VEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMD 192 (367)
T ss_pred HHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCC
Confidence 34444444567888764 244668899999999998852 1211000
Q ss_pred ---------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 ---------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ---------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
....+++.|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 193 EANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred cccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 0112456677777654 799888 557899999999999999999875
No 368
>PLN02535 glycolate oxidase
Probab=92.38 E-value=1.2 Score=43.76 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=62.1
Q ss_pred HHHHHHhcCCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCCCC-------------------------
Q 019244 191 VKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQLD------------------------- 235 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~~~------------------------- 235 (344)
+++|.+..+-|.+.+.- .+.+..+++.++|+.+|++.- .|-|..|
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 44445545668888874 234567889999999998852 1111000
Q ss_pred ------------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 236 ------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 236 ------------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
....+++.+..+++.. ++||++ .||.+.+|+.++..+|+|+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0113456677776654 689888 66999999999999999999886
No 369
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=92.28 E-value=0.53 Score=42.61 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 019244 189 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 268 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~d 268 (344)
+.++.+++..+.|++|- ++...+.+.|+|+|.++.. | ..+.+.++.++. ..+.--.+++-++
T Consensus 55 ~~~~~lc~~~~v~liIN-----d~~dlA~~~~AdGVHlGq~-----D------~~~~~ar~~~~~--~~iIG~S~h~~ee 116 (211)
T COG0352 55 EKLRALCQKYGVPLIIN-----DRVDLALAVGADGVHLGQD-----D------MPLAEARELLGP--GLIIGLSTHDLEE 116 (211)
T ss_pred HHHHHHHHHhCCeEEec-----CcHHHHHhCCCCEEEcCCc-----c------cchHHHHHhcCC--CCEEEeecCCHHH
Confidence 46788888889999975 4566778999999977321 1 123334444432 2344445779999
Q ss_pred HHHHHHcCCCEEEEchHH
Q 019244 269 VFKALALGASGIFIGRPV 286 (344)
Q Consensus 269 v~kalalGAd~V~ig~~~ 286 (344)
+.++..+|||.|++|.-|
T Consensus 117 a~~A~~~g~DYv~~Gpif 134 (211)
T COG0352 117 ALEAEELGADYVGLGPIF 134 (211)
T ss_pred HHHHHhcCCCEEEECCcC
Confidence 999999999999999754
No 370
>PRK05269 transaldolase B; Provisional
Probab=92.26 E-value=1.9 Score=41.54 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-.. -||-.|| +.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 576555444332 78888888899999999999999887653 3443222 234555555655543
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.+..|++ ..+|+..++.. ..|+|.+-+.-.++..+.
T Consensus 214 k~~~~~t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMG-ASFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 23555666 46999999996 569999988888887765
No 371
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.26 E-value=2.1 Score=39.46 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=76.6
Q ss_pred ccceeeccccc-ccccCChhhHHHHHHHHHcCCcc--c-cCCHHHHHHHHHHHHHcCCcEEE-eccCCccccccHHHHHh
Q 019244 71 SMPIMIAPTAM-QKMAHPEGEYATARAASAAGTIM--V-YKDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIKN 145 (344)
Q Consensus 71 ~~Pi~iapm~~-~~~~~~~~~~~lA~aA~~~g~~~--~-~~d~~~~~~~i~~a~~ag~~~l~-~tvd~~~~g~r~~~~~~ 145 (344)
+.|+++ |++ ....+ .+.....+.+.++|+-. + -...+...++++.+++.|.+.+. +++.++.- |-..+..
T Consensus 76 ~~pv~l--m~y~n~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~--~i~~i~~ 150 (242)
T cd04724 76 TIPIVL--MGYYNPILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE--RIKKIAE 150 (242)
T ss_pred CCCEEE--EEecCHHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHh
Confidence 457554 544 22222 24456788888888765 1 12446677889999999987644 67666531 2222211
Q ss_pred hcCCCCcccccccccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEE
Q 019244 146 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGI 224 (344)
Q Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I 224 (344)
. ..++.. + +......+.+. .......+.++++|+..++|+.+.+. .+.++++.+.++ +|++
T Consensus 151 ~---~~~~vy--~-------~s~~g~tG~~~-----~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 151 L---ASGFIY--Y-------VSRTGVTGART-----ELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred h---CCCCEE--E-------EeCCCCCCCcc-----CCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEE
Confidence 0 001000 0 00000000000 00111346799999988999999875 568899999999 9999
Q ss_pred EEc
Q 019244 225 IVS 227 (344)
Q Consensus 225 ~v~ 227 (344)
+|.
T Consensus 213 VvG 215 (242)
T cd04724 213 IVG 215 (242)
T ss_pred EEC
Confidence 995
No 372
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=92.26 E-value=2.2 Score=41.08 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-----c--------hhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-.. -||-.|| | .+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 566554444332 88988888899999999999999888653 3443332 1 34445555555443
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 291 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~ 291 (344)
+.+. .|....+|+..++.+ ..|+|.+-+.-.++..+.
T Consensus 212 k~~g~~T-~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 212 KKHGYPT-EVMGASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHcCCCc-EEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 2244 444566999999996 579999999988877654
No 373
>PRK12346 transaldolase A; Provisional
Probab=92.10 E-value=2.3 Score=40.82 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=68.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCC-------------chhhHHHHHHHHHHc
Q 019244 187 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 251 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~-------------g~~~~~~l~~i~~~~ 251 (344)
+|+-++.++... ++++-+=.+.|.+.+..+.++|++.|-. .-||-.|| +.+.+..+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISP--FVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEe--cccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 676555544332 7888888889999999999999998865 33443332 234455555555544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 252 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 252 ---~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+.+..|+ ...+|+..++. ...|+|.+-+.-.++..+..
T Consensus 213 k~~~~~T~Vm-~ASfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 213 KQHRYETIVM-GASFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred HHcCCCcEEE-ecccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 2234444 45699999998 44699999999888776643
No 374
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=92.07 E-value=6.8 Score=35.81 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=51.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEee----cCH-HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEe
Q 019244 187 SWKDVKWLQTIT-KLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 260 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~v----~~~-~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~ 260 (344)
+.+.++++.+.. +++|.+--. .++ +..+++++.|+.-|-.| ||. ....-....|.++.+..++++.|++-
T Consensus 102 D~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~Im~G 177 (241)
T COG3142 102 DMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIIIMAG 177 (241)
T ss_pred CHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEEEeC
Confidence 334555555544 455544432 334 44578999999998764 443 11122334455555555578999999
Q ss_pred cCCCCHHHHHHH-HHcCCC
Q 019244 261 GGVRRGTDVFKA-LALGAS 278 (344)
Q Consensus 261 GGIr~g~dv~ka-lalGAd 278 (344)
|||+ .+.+... ...|+.
T Consensus 178 aGV~-~~N~~~l~~~tg~~ 195 (241)
T COG3142 178 AGVR-AENIAELVLLTGVT 195 (241)
T ss_pred CCCC-HHHHHHHHHhcCch
Confidence 9998 5666655 456754
No 375
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.00 E-value=1.6 Score=38.80 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=68.9
Q ss_pred HHHHHHHHhc-CCcEEEEeecCHHHHHHHHHcCCcEEEEc----cCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCC
Q 019244 189 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS----NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 263 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v~~~~~a~~~~~~G~d~I~v~----~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGI 263 (344)
+.++.||+.- +.-+.+|--.+.+++....+ -+|.+-|- |.||.. +-..-+.-+..+++.. .++.|=.|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQk--Fme~mm~KV~~lR~ky-p~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQK--FMEDMMPKVEWLREKY-PNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhh--hHHHHHHHHHHHHHhC-CCceEEecCCc
Confidence 3577787752 23345554456777766655 45665543 334421 1122222333444332 36777799999
Q ss_pred CCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q 019244 264 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 312 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~el~~~ 312 (344)
. +..+-|+..+||+++..|+..+.+ ..-.++|..|+++...+
T Consensus 179 ~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 179 G-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred C-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 7 688999999999999999998753 22235677777766544
No 376
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.97 E-value=2.4 Score=40.20 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 3467899999999999999999886 567889999999999998853
No 377
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=91.89 E-value=0.65 Score=43.39 Aligned_cols=39 Identities=36% Similarity=0.487 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 189 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+|+.+++||.+.- +.++++++.+. .|+|+++|..
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 469999999999999986 57899999999 9999999953
No 378
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.80 E-value=2.6 Score=40.01 Aligned_cols=44 Identities=14% Similarity=0.407 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 187 p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 187 PKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 567899999999999999999886 46788999999999999875
No 379
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.76 E-value=3.5 Score=40.00 Aligned_cols=127 Identities=23% Similarity=0.359 Sum_probs=75.7
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCC-Cchh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~-~g~~--~~~~l~~i~~~~~~~~~v 257 (344)
++..++++.+ +++||++|-.+ +.++ ++.+...|-.-+.+.-.|.+... .... .+.+++.+++.. ..||
T Consensus 189 N~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPV 265 (335)
T PRK08673 189 NFDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPV 265 (335)
T ss_pred CHHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCE
Confidence 4456666655 58999999863 5655 45566778877777544554442 1222 344566665544 6899
Q ss_pred EEecCCCCH------HHHHHHHHcCCCEEEEchHHHH--HhhhcChHH-HHHHHHHHHHHHHHHHHHhC
Q 019244 258 FLDGGVRRG------TDVFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 258 ia~GGIr~g------~dv~kalalGAd~V~ig~~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 317 (344)
|++..=.+| .-...|+++|||++++-..+-- ++ ++|... --+-++.|.++++..-..+|
T Consensus 266 i~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 266 IVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 886543334 3456788999999999875522 11 233221 11234556666666655555
No 380
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.74 E-value=0.4 Score=43.64 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++.+++.+ ++|+++.+ +.++++++.+.++|+|.|++++
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567899999998 99999987 4799999999999999999965
No 381
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.72 E-value=0.43 Score=43.54 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhc-CCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..++.++.+++.+ ++|+++.+ +.+.++++.+.++|+|.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 3578899999998 89998876 5899999999999999999965
No 382
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.47 E-value=2.9 Score=39.69 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=39.5
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++++.|+.-|-++.
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEecc
Confidence 3567899999999999999999886 567889999999999998753
No 383
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.45 E-value=2.8 Score=39.71 Aligned_cols=44 Identities=16% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 187 p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 187 PKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 467899999999999999999886 56788999999999999875
No 384
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.44 E-value=1 Score=42.73 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~d 268 (344)
+-|+++-++-+.-.|+.+.++|.+++.+|+++-. ..|.+.-++ +.+..|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4688888888899999999999999999975311 123333232 3344444444 79999965 8888888
Q ss_pred H----HHHHHcCCCEEEEc
Q 019244 269 V----FKALALGASGIFIG 283 (344)
Q Consensus 269 v----~kalalGAd~V~ig 283 (344)
+ -++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899988884
No 385
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.28 E-value=1.1 Score=42.63 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=58.0
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----CCCCchhhHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~~~~g~~~~~----~l~~i~~~~~~~~~via~G--GIr~g~ 267 (344)
+.|+++-++-+.-.|+.+.++|.++|.+|+++=. ..|.+.-+++ .+..|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688888888899999999999999999875311 1243333332 334444444 79999965 777888
Q ss_pred HH----HHHHHcCCCEEEE
Q 019244 268 DV----FKALALGASGIFI 282 (344)
Q Consensus 268 dv----~kalalGAd~V~i 282 (344)
++ -++...||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445689988888
No 386
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=91.25 E-value=0.99 Score=43.20 Aligned_cols=43 Identities=21% Similarity=0.629 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHc-CCcEEEEc
Q 019244 185 SLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~-G~d~I~v~ 227 (344)
..+|+.+.++++.+++||+.=| +.|.++++...+. |+|+|-++
T Consensus 169 ~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 169 PADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 4489999999999999999866 5899999988776 99999884
No 387
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.18 E-value=3.2 Score=38.93 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHHH----HHHHHcCCcEEEEccCCCCCCC-Cchh--hHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~a----~~~~~~G~d~I~v~~~gG~~~~-~g~~--~~~~l~~i~~~~~~~~~v 257 (344)
+.+.++++ ..+++||++|..+ +.++. +.+...|-.-+.+.-.|++... .... .+..++.+++.. .+||
T Consensus 123 n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV 199 (266)
T PRK13398 123 NFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPI 199 (266)
T ss_pred CHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCE
Confidence 34567777 4569999999863 56653 4555678766666544553332 1122 334455554433 6899
Q ss_pred EEecCCCC------HHHHHHHHHcCCCEEEEchHHH
Q 019244 258 FLDGGVRR------GTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 258 ia~GGIr~------g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|..=.. ......|+++||+++++-+.+-
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 99543222 4567788999999999987653
No 388
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=91.15 E-value=7.1 Score=37.42 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH--------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 267 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-------------- 267 (344)
.+|++|+... +.|+|.+-++- ||-+... +.| .++.|.+|++.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4688887766 57999998874 4432111 333 467899998877 79999988766665
Q ss_pred --------HHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 268 --------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 268 --------dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
++.|++.+|..=|-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999987554221 00 1113334455666777777777754
No 389
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.10 E-value=2.1 Score=38.50 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
..++.+.++++.+.. +.|+.+--. .+++. .+.+.+.|++.|-.||.... . ...++.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~-a---~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT-A---LEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS-T---TTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC-H---HHHHHHHHHHHHHcCCCcEE
Confidence 345666677777665 677776543 33443 56788999999987653222 1 12345566665555678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEE
Q 019244 258 FLDGGVRRGTDVFKALA-LGASGIF 281 (344)
Q Consensus 258 ia~GGIr~g~dv~kala-lGAd~V~ 281 (344)
++.|||+ ...+.+.++ .|+..+=
T Consensus 174 m~GgGv~-~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVR-AENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS---TTTHHHHHHHHT-SEEE
T ss_pred EecCCCC-HHHHHHHHHhhCCeEEe
Confidence 9999998 466777776 8887653
No 390
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.09 E-value=3 Score=40.23 Aligned_cols=94 Identities=20% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCcEEEEee-cCHH----HHHHHHHcCCcEEEEccCC-C-CCCCCch----hhHHHHHHHHHHccCCCcEE
Q 019244 190 DVKWLQTITKLPILVKGV-LTAE----DARIAVQAGAAGIIVSNHG-A-RQLDYVP----ATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~----~a~~~~~~G~d~I~v~~~g-G-~~~~~g~----~~~~~l~~i~~~~~~~~~vi 258 (344)
.++..++..+.||++-.. .+++ -++.+.++|+|+|.+--.. . +....+. ...+.+..+++.+ ++||+
T Consensus 90 ~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~ 167 (325)
T cd04739 90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVA 167 (325)
T ss_pred HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEE
Confidence 455555555789988764 3443 3677788999999984321 1 1000111 1234455555544 68888
Q ss_pred E--ecCCCCHHHHHHHH-HcCCCEEEEchH
Q 019244 259 L--DGGVRRGTDVFKAL-ALGASGIFIGRP 285 (344)
Q Consensus 259 a--~GGIr~g~dv~kal-alGAd~V~ig~~ 285 (344)
+ +..+....++++++ ..|||++.+...
T Consensus 168 vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 168 VKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred EEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 7 44555667777765 589999987654
No 391
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=91.03 E-value=6.8 Score=37.20 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=75.4
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+. ..|. .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887766 47999999874 55431 2232 567899998887 7999998877777 57888999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987554211 00 0123344456677777777777764
No 392
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.02 E-value=16 Score=35.43 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhcCCcEEEEeec-CHHHH----HHHHHcCCc---EEEEccCCCCCCC--CchhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL-TAEDA----RIAVQAGAA---GIIVSNHGARQLD--YVPATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~-~~~~a----~~~~~~G~d---~I~v~~~gG~~~~--~g~~~~~~l~~i~~~~~~~~~ 256 (344)
++..|+.+.+ +++||++|..+ +.++. ..+.+.|.+ .+.+ |..+... .....+..++.+++.. .+|
T Consensus 122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~ll--hC~s~YP~~~~~~nL~~I~~Lk~~f--~~p 196 (329)
T TIGR03569 122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLL--HCTTEYPAPFEDVNLNAMDTLKEAF--DLP 196 (329)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEE--EECCCCCCCcccCCHHHHHHHHHHh--CCC
Confidence 5677888877 59999999764 55553 345567875 3333 2211111 1112345566555555 588
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q 019244 257 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 257 via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~~G~~~v----~~~l~~l~~el~~~m~~~G~~ 319 (344)
|..|+=-..-.=...|.++||+ +|=+.|-..-+..|.+.. -+-+..|.++++.+-..+|..
T Consensus 197 VG~SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 197 VGYSDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred EEECCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8886511112233467889999 445544322122232210 123567777788888888864
No 393
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.93 E-value=3.2 Score=38.80 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCC---chhhHHHHHHHHHHccCCCcE
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~---g~~~~~~l~~i~~~~~~~~~v 257 (344)
+.+.++.+.+ +++||++|..+ +.++ +..+.+.|.+-|.+.-.|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3456777755 59999999863 5666 345667888766664222222211 123456677776554 6999
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEchHH
Q 019244 258 FLD----GGVRR--GTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 258 ia~----GGIr~--g~dv~kalalGAd~V~ig~~~ 286 (344)
+.+ +|.|. ..-...|+++||+++++-+.+
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 993 34322 233447889999999998765
No 394
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.92 E-value=2.2 Score=38.29 Aligned_cols=70 Identities=27% Similarity=0.359 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEEe-----cCCCCH--------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via~-----GGIr~g--------~dv~k 271 (344)
.+.+++..+.+.|||-|-+..+ ||. -|+...+..+.+.. ++||.+. |++... .|+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNLEVGGL-----TPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTGGGT-B--------HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCccCCCc-----CcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHH
Confidence 6899999999999999998642 332 46677788887755 6888774 333322 57778
Q ss_pred HHHcCCCEEEEch
Q 019244 272 ALALGASGIFIGR 284 (344)
Q Consensus 272 alalGAd~V~ig~ 284 (344)
+..+|||.+.+|-
T Consensus 81 ~~~~GadG~VfG~ 93 (201)
T PF03932_consen 81 LRELGADGFVFGA 93 (201)
T ss_dssp HHHTT-SEEEE--
T ss_pred HHHcCCCeeEEEe
Confidence 8889999999993
No 395
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=90.92 E-value=0.52 Score=42.48 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=36.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEE
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 226 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v 226 (344)
+.+.++.+++.+++|+++.+ +.++++++.+.++|+|+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 56789999999999999987 47999999999999999987
No 396
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.87 E-value=2.7 Score=39.54 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=75.9
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCC-CCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~-~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
+.+.++++.+ ++.||.+|-- +++++ ++.+.+.|-.-|.+.-.|=+. ...-...+..++.+++.. ..+|||.
T Consensus 119 ntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~ 196 (281)
T PRK12457 119 QTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIF 196 (281)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEE
Confidence 3456666655 5899999987 78876 677888999999987665431 111123455666665532 2689998
Q ss_pred e---------------cCCCCHHH--HHHHHHcCCCEEEEchHHHH--HhhhcChHH-HHHHHHHHHHHHHHHHHHhC
Q 019244 260 D---------------GGVRRGTD--VFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 260 ~---------------GGIr~g~d--v~kalalGAd~V~ig~~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 317 (344)
| ||-|.--- +..+++.|||++++-..--- ++ ++|... --+.++.+.++++.+-...+
T Consensus 197 DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~Al-sDg~q~l~~~~~~~l~~~l~~i~~~~~ 273 (281)
T PRK12457 197 DVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRAR-CDGPSALPLDQLEPFLSQVKALDDLVK 273 (281)
T ss_pred eCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccC-CCcccccCHHHHHHHHHHHHHHHHHHc
Confidence 6 45443222 33677899999998863211 11 234321 11234555555555544443
No 397
>PRK03903 transaldolase; Provisional
Probab=90.43 E-value=7.5 Score=36.63 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHH---HcCCcE------EEEccCCCCC---CCC--------chhhHHHHHHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAV---QAGAAG------IIVSNHGARQ---LDY--------VPATIMALEEVVK 249 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~---~~G~d~------I~v~~~gG~~---~~~--------g~~~~~~l~~i~~ 249 (344)
.++.+.+. ++++-+=.+.|.+.+..+. ..|++. -++|-.-||- .+. +...+....++.+
T Consensus 89 Ai~~L~~~-GI~vn~TliFS~~Qa~~~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~l~~~~gIa~a~~~y~ 167 (274)
T PRK03903 89 AMSALMKK-GISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKNLQAKSGIMNATKCYN 167 (274)
T ss_pred HHHHHHHC-CCcEEEeeecCHHHHHHHHHHHHcCcccccccCCceeeeecchHhhhcccccccccccccHHHHHHHHHHH
Confidence 34455443 7898888889999988844 459865 1223233332 111 1123333344432
Q ss_pred ---Hc--cCCCcEEEecCCCC----HHHHHHHHHcCCCEEEEchHHHHHhhhcC
Q 019244 250 ---AT--QGRIPVFLDGGVRR----GTDVFKALALGASGIFIGRPVVYSLAAEG 294 (344)
Q Consensus 250 ---~~--~~~~~via~GGIr~----g~dv~kalalGAd~V~ig~~~l~~~~~~G 294 (344)
.. ...-.+++|-|+++ ..++++++..|++.+-+.-..+.++..+|
T Consensus 168 ~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg 221 (274)
T PRK03903 168 QIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDG 221 (274)
T ss_pred HHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcC
Confidence 22 12456788889999 99999999999999999988888876654
No 398
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.39 E-value=3.4 Score=40.26 Aligned_cols=83 Identities=24% Similarity=0.293 Sum_probs=59.2
Q ss_pred CCcEEEEee------cCHHHHHHHHHcCCcEEEEccC---CC-C--------CCC-------------------------
Q 019244 199 KLPILVKGV------LTAEDARIAVQAGAAGIIVSNH---GA-R--------QLD------------------------- 235 (344)
Q Consensus 199 ~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~~---gG-~--------~~~------------------------- 235 (344)
+.|+++-.- .+.+..+++.++|+++|+++-- .| | +..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 368877553 2346678999999999999631 11 1 000
Q ss_pred CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 236 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 236 ~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124566777777765 7899987 68899999999999999999875
No 399
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.38 E-value=3.4 Score=40.08 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 184 RSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
+..+|+.|+.|++... +||++-| +.+.+|+..+.+ -|+|+|-+.
T Consensus 187 ~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 187 GPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred CCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 3458999999999997 9999876 589999999888 999999764
No 400
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.35 E-value=2.6 Score=38.82 Aligned_cols=84 Identities=31% Similarity=0.379 Sum_probs=55.8
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCC-HH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~-g~ 267 (344)
+.|+++-++-+.-.|+.+.++|.+++.+|+++=. ..|.+.-++ +.+..|...+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 4799999999999999999999999999864210 134343333 3455555555 79999976 6666 43
Q ss_pred HH----HHHHHcCCCEEEEch
Q 019244 268 DV----FKALALGASGIFIGR 284 (344)
Q Consensus 268 dv----~kalalGAd~V~ig~ 284 (344)
++ .+...+||.++.|--
T Consensus 86 ~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEeec
Confidence 43 455668999998853
No 401
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.30 E-value=4.2 Score=38.51 Aligned_cols=46 Identities=17% Similarity=0.441 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 3567899999999999999999886 567889999999999998853
No 402
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.25 E-value=9.8 Score=36.08 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=71.9
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHcCCCE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASG 279 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~G--GIr~g~dv~kalalGAd~ 279 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=| |+. -+++.|++.+|..=
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~-~e~~~kai~~GI~K 228 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVP-DEFVRRTIELGVTK 228 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCC---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC-HHHHHHHHHcCCeE
Confidence 4688887766 57999999874 5543 2223 467899998887 78988866 454 56777899999999
Q ss_pred EEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 280 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 280 V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
|-+++-+..+... .. ..-.....+.+++-++..|..+|+.
T Consensus 229 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 229 VNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred EEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987654321 00 0113334455667777777777754
No 403
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=90.16 E-value=8.8 Score=36.41 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=73.0
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887765 57999999874 4432 2333 467899998877 7999998877766 66778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+-.+... .. ..-.....+.+++.++..|..+|+.
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987543210 00 0112334455666677777777654
No 404
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.14 E-value=7.9 Score=36.52 Aligned_cols=107 Identities=26% Similarity=0.365 Sum_probs=72.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g-~dv~kalalGAd~V 280 (344)
.+|++++... +.|+|.+-++. ||-+. .+.| .++.|.++.+.+ ++|+..=||=..+ +++.|++.+|..=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~--~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYK--GGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887766 46999999874 55331 1233 467899999888 7999998877777 45888999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~ 318 (344)
-+++.+..+... .. ..-.....+.+.+.++..|..+|+
T Consensus 224 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 224 NINTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999987654221 00 011233334566666666666665
No 405
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=90.14 E-value=0.64 Score=42.72 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=37.4
Q ss_pred cHHHHHHHHHhcCC-cEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKL-PILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~-PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.+.++.+++.++. |+++.+ +.++++++.+.++|||+|+|++
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 57889999999888 999987 5789999999999999999965
No 406
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.07 E-value=1.3 Score=42.07 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC-----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~-----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~ 267 (344)
+-|+++-++-+.-.|+.+.++|.+++.+++.+.. ..|.+.-++ ..+..|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888899999999999999999764321 124333333 2344444444 79999965 777777
Q ss_pred HH----HHHHHcCCCEEEEc
Q 019244 268 DV----FKALALGASGIFIG 283 (344)
Q Consensus 268 dv----~kalalGAd~V~ig 283 (344)
++ -++...||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 35556899998884
No 407
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=89.88 E-value=0.57 Score=41.14 Aligned_cols=41 Identities=37% Similarity=0.484 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 188 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++++++.+++|++..| +.+.|++..+.++|+++|..|+
T Consensus 129 p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 129 PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 3568888888999999988 4789999999999999998875
No 408
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=89.83 E-value=2.9 Score=40.72 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHhcC--CcEEEEeecC----HHHHHHHHHc---CCcEEEEccCCCCCCCCchhhHHHHHHHHHH---cc-CCC
Q 019244 189 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQ-GRI 255 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v~~----~~~a~~~~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~---~~-~~~ 255 (344)
+.++.+++.++ .|+++ ++-+ .++|..+.+. |+|.|-++|.+.+ .+ ...+.+.++++. .+ .++
T Consensus 188 ~A~~~~~~~~p~~~~i~v-evdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~---~g-~l~~~v~~vr~~ld~~g~~~v 262 (343)
T PRK08662 188 EAWKAFDEVVPPDVPRIA-LVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR---RG-NFRKIVREVRWTLDIRGYEHV 262 (343)
T ss_pred HHHHHHHHHCCCCCCEEE-EEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC---Cc-cHHHHHHHHHHHHHhcCCCCe
Confidence 35778887764 45544 3333 3667776666 8999999885410 00 112333334332 22 357
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
.|.+|||| +...+.+.-.. +|.+.+|+.+..
T Consensus 263 ~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~ 293 (343)
T PRK08662 263 KIFVSGGL-DPERIRELRDV-VDGFGVGTYISF 293 (343)
T ss_pred EEEEeCCC-CHHHHHHHHHh-CCEEEcCccccC
Confidence 89999999 68888888888 999999997754
No 409
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=89.73 E-value=9 Score=37.09 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=56.7
Q ss_pred CcHHH---HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 186 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 186 ~~~~~---i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+.++. +.+.++..+++++. .+.+.+.+..+.+.|++.+.|... -...+..|..+++ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCcEEEECC
Confidence 44554 55555556787663 467889999999999999999532 1234566666654 2689999999
Q ss_pred CCCHHHHHHHHH
Q 019244 263 VRRGTDVFKALA 274 (344)
Q Consensus 263 Ir~g~dv~kala 274 (344)
..+-.++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999988775
No 410
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.67 E-value=4.5 Score=38.30 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHHHHhcCCcEEEEee-cCHHH----HHHHHHcC-CcEEEEcc------CCCCCCCCch-hhHHHHHHHHHHccCCCcE
Q 019244 191 VKWLQTITKLPILVKGV-LTAED----ARIAVQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v-~~~~~----a~~~~~~G-~d~I~v~~------~gG~~~~~g~-~~~~~l~~i~~~~~~~~~v 257 (344)
+...++.++.|+++-.. .++++ |+++.++| +|+|.+-- +||..+...+ ...+.+..+++.+ ++||
T Consensus 83 ~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv 160 (301)
T PRK07259 83 ELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPV 160 (301)
T ss_pred HHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCE
Confidence 33333445789998764 45544 67788999 99998832 2232221111 2234555555554 6888
Q ss_pred EEe--cCCCCHHHHHHHH-HcCCCEEEE
Q 019244 258 FLD--GGVRRGTDVFKAL-ALGASGIFI 282 (344)
Q Consensus 258 ia~--GGIr~g~dv~kal-alGAd~V~i 282 (344)
++- ..+....++++.+ +.|+|++.+
T Consensus 161 ~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 161 IVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred EEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 873 3444556677755 489998765
No 411
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=89.61 E-value=4.8 Score=38.01 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 180 ~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 180 EPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 4567899999999999999999887 567889999999999998753
No 412
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=89.44 E-value=2.3 Score=39.30 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCC----CCCchhhHHH----HHHHHHHccCCCcEEEecCCCCH---H
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMA----LEEVVKATQGRIPVFLDGGVRRG---T 267 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~----~~~g~~~~~~----l~~i~~~~~~~~~via~GGIr~g---~ 267 (344)
+-|+++=++-+.-.|+.+.++|+|.|.++++++.. .|.+.-+++. ++.|.+.. ...||++|.--.++ .
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 56888877788889999999999999998754321 2333333332 23333333 24799998643333 5
Q ss_pred H----HHHHHHcCCCEEEEc
Q 019244 268 D----VFKALALGASGIFIG 283 (344)
Q Consensus 268 d----v~kalalGAd~V~ig 283 (344)
+ +.+.+..||++|-+-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 445677999999984
No 413
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=89.33 E-value=4.4 Score=38.99 Aligned_cols=42 Identities=14% Similarity=0.468 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
.+|+.++++++.+++||+.=+ +.++++++.+.+ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 468999999999999988755 579999999987 699999884
No 414
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.30 E-value=4.5 Score=38.28 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++++.+++|++.+++|+++-|. .+.++.+++++.|+..|-++.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECH
Confidence 556889999999999999999886 567889999999999998853
No 415
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.30 E-value=5.7 Score=35.20 Aligned_cols=89 Identities=25% Similarity=0.144 Sum_probs=55.3
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-ecCHH--HHHHHHHcCCcEEEEccCCCCCCCCchhhH-HHHHHHHHHccCCCcEEEe-
Q 019244 187 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD- 260 (344)
Q Consensus 187 ~~~~i~~i~~~~-~~PvivK~-v~~~~--~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~-~~l~~i~~~~~~~~~via~- 260 (344)
..+.|+.+++.. +.++++-. ++++. +++.+.++|+|+|.+... ....++ +.+..+.+ . .+++++.
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~------~~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV------ADDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc------CCHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888875 44555432 23544 689999999999987432 111122 33333332 2 5777765
Q ss_pred cCCCCH-HHHHHHHHcCCCEEEEch
Q 019244 261 GGVRRG-TDVFKALALGASGIFIGR 284 (344)
Q Consensus 261 GGIr~g-~dv~kalalGAd~V~ig~ 284 (344)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 344444 677778888999998853
No 416
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=89.22 E-value=3.6 Score=39.07 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHhc-CCcEEEEee--cCHHHHHHHHHcCCcEEEEc
Q 019244 183 DRSLSWKDVKWLQTIT-KLPILVKGV--LTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~-~~PvivK~v--~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+.++++.+++|++.+ ++|+++-|. .+.++.+++.+.|+.-|-++
T Consensus 188 ~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 188 KPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp STC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEES
T ss_pred CcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEe
Confidence 3456889999999999 999999886 56789999999999999874
No 417
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.17 E-value=12 Score=35.48 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=71.2
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMY---KGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4788887766 57999999874 5543 2223 457899998887 689888664333 467788999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 230 NVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987644210 00 0112333455666777777777753
No 418
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.10 E-value=4.5 Score=40.05 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHHhc-CCcEEEEee--cCHHH----HHHHHHcCCcEEEEcc---CCCCCCCCch---hhHHHHHHHHHHcc--C
Q 019244 189 KDVKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQ--G 253 (344)
Q Consensus 189 ~~i~~i~~~~-~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~---~gG~~~~~g~---~~~~~l~~i~~~~~--~ 253 (344)
+.+..+++.+ ++|||+-.. .++++ ++++.++|+|+|.+-- |+....+.|. -..+.+.++.++++ -
T Consensus 102 ~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~ 181 (385)
T PLN02495 102 AEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA 181 (385)
T ss_pred HHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh
Confidence 3466777777 579999873 45544 6788899999999742 2210001111 12344544433332 1
Q ss_pred CCcEEE--ecCCCCHHHHHH-HHHcCCCEEEEchHHH
Q 019244 254 RIPVFL--DGGVRRGTDVFK-ALALGASGIFIGRPVV 287 (344)
Q Consensus 254 ~~~via--~GGIr~g~dv~k-alalGAd~V~ig~~~l 287 (344)
++||++ +-.+.+-.++++ +...|||+|.+-..+.
T Consensus 182 ~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 182 TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 688877 666777788888 5568999998866543
No 419
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=88.83 E-value=14 Score=37.33 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcC--Cc-EEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 188 WKDVKWLQTITK--LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 188 ~~~i~~i~~~~~--~P-vivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+.-.+|....+ .. |.--|+.|++|++.+.. |+|++-|+.. +-..+.....+.++.. ..+.| -|++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit 265 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLT 265 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCC
Confidence 345566666553 22 22245689999999865 7999988431 1112223334444321 12322 5799
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 019244 265 RGTDVFKALALGASGIFIG 283 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig 283 (344)
+.+|+..+..+|||++++=
T Consensus 266 ~~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred CHHHHHHHHhCCCCEEeeE
Confidence 9999999999999999983
No 420
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=88.80 E-value=0.66 Score=42.52 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 190 DVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.++..++..+.|+++.+ +.+.+.|+.+.++|||.|+|.|
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 34444444589999987 4799999999999999999976
No 421
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.56 E-value=6.6 Score=36.44 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHhc-CCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE
Q 019244 184 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 257 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~-~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v 257 (344)
...+.+.++.+.+.. ++|+.+--. .++.. .+.+.+.|++.|-.||...+ ....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-E
Confidence 345666777777766 577766443 23433 57799999999977643211 1223445555555544444 8
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 258 FLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 258 ia~GGIr~g~dv~kalalGAd~V~ig 283 (344)
++-|||+ ..++.+....|+..+=.+
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 8888887 677777778999877543
No 422
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.56 E-value=3.1 Score=38.58 Aligned_cols=70 Identities=29% Similarity=0.342 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHcCCcEEEEccC---CCCCCCCchhhHHHHHHHHHHccCCCcEEE-----ecCCCCH--------HHHHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFK 271 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~---gG~~~~~g~~~~~~l~~i~~~~~~~~~via-----~GGIr~g--------~dv~k 271 (344)
.+.+++..+.+.|||-|-+... ||. -|+...+..+++.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKEGGL-----TPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCCCCc-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999988642 443 36667777777765 677776 3444332 46777
Q ss_pred HHHcCCCEEEEch
Q 019244 272 ALALGASGIFIGR 284 (344)
Q Consensus 272 alalGAd~V~ig~ 284 (344)
+..+|||.|.+|-
T Consensus 82 ~~~~GadGvV~G~ 94 (248)
T PRK11572 82 VRELGFPGLVTGV 94 (248)
T ss_pred HHHcCCCEEEEee
Confidence 7789999999983
No 423
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=88.52 E-value=5.2 Score=37.99 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
++|+.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 193 Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 237 (288)
T TIGR00167 193 LDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDT 237 (288)
T ss_pred cCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcCh
Confidence 7899999999999999999887 567889999999999998753
No 424
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=88.51 E-value=5.3 Score=38.44 Aligned_cols=113 Identities=24% Similarity=0.310 Sum_probs=68.7
Q ss_pred HHHHHHHHHcC-Ccc----ccCCHH-H---HHHHHHHHHHc---CCcEEEeccCCccccccHHHHHhhcCCCCccccccc
Q 019244 91 YATARAASAAG-TIM----VYKDRN-V---VAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 158 (344)
Q Consensus 91 ~~lA~aA~~~g-~~~----~~~d~~-~---~~~~i~~a~~a---g~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~ 158 (344)
..+|+-|++.+ +-. +..|+. . ..+.+++++.. ||..+.+..|.|....+-.++. +..+
T Consensus 153 v~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g----------~~av 222 (326)
T PRK11840 153 VRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAG----------AVAV 222 (326)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcC----------CEEE
Confidence 45777777754 333 221111 1 23456677766 9999888888887765544321 1111
Q ss_pred ccccccccccccchhhHHHHhhcCCCCCcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEc
Q 019244 159 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..+ .+.+.. +-+-.+.+.|+.+++..++||++-. +.+++|+..+.+.|+|++-+.
T Consensus 223 mPl-------------~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 223 MPL-------------GAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred eec-------------cccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 100 011110 1111256678888888899998864 579999999999999999774
No 425
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.50 E-value=8.2 Score=34.77 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec-CHHHHHHHHH--cCCcEEEEccC----CCC--CCCCchhhHHHHHHHHHHccC
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL-TAEDARIAVQ--AGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQG 253 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~-~~~~a~~~~~--~G~d~I~v~~~----gG~--~~~~g~~~~~~l~~i~~~~~~ 253 (344)
+++.+.+.++.+++..++++|-.... ..++...+.+ ..+|++.++.. ||+ ..|| ..+. +..
T Consensus 84 Hg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw-----~~l~---~~~-- 153 (210)
T PRK01222 84 HGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDW-----SLLP---AGL-- 153 (210)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccch-----HHhh---hcc--
Confidence 44556677889998777786533222 3333333322 36899988753 443 2344 3331 122
Q ss_pred CCcEEEecCCCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 254 RIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 254 ~~~via~GGIr~g~dv~kala-lGAd~V~ig~~~ 286 (344)
+.|++..|||. ++++.+++. ++..+|=+.+.+
T Consensus 154 ~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 154 AKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred CCCEEEECCCC-HHHHHHHHHhcCCCEEEecCce
Confidence 46999999997 889999997 487777776654
No 426
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=88.48 E-value=2.3 Score=37.06 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCcEEEEee----cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 190 DVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v----~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
.+..-++ .+++.+-..- .+.+. ...+.+.++|+|-+= . +- ....+.++.+.. ++|||+.|=|+
T Consensus 87 ~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL--P-----Gv--~Pkvi~~i~~~t--~~piIAGGLi~ 154 (181)
T COG1954 87 VIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL--P-----GV--MPKVIKEITEKT--HIPIIAGGLIE 154 (181)
T ss_pred HHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc--C-----cc--cHHHHHHHHHhc--CCCEEeccccc
Confidence 3444444 3666655542 22333 345667999999882 1 11 224566666655 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchHHHH
Q 019244 265 RGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+-+|+-.||..||-+|--..--+|
T Consensus 155 t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 155 TEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred cHHHHHHHHHhCcEEEeecchhhc
Confidence 999999999999998875544444
No 427
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=88.27 E-value=5.8 Score=38.98 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=61.9
Q ss_pred HHHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC--------------------------
Q 019244 191 VKWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ-------------------------- 233 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~-------------------------- 233 (344)
+++|.+.. +-|.+.-.- .+.+..+++.++|+++|++.- .|-|.
T Consensus 123 lEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 202 (367)
T TIGR02708 123 LPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK 202 (367)
T ss_pred HHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence 44444442 457766553 345668899999999998852 11110
Q ss_pred -CC------CchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 234 -LD------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 234 -~~------~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.. ....+++.|.++++.. ++||++= ||.+.+|+.++..+|+++|.++.
T Consensus 203 ~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 203 SMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred chhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 00 0113456788887766 6899976 69999999999999999998774
No 428
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.20 E-value=6.7 Score=32.67 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~GGI 263 (344)
.+..+-+..+.-|+--++ .++++ ++.+.+.++|.|.+|+.-+ .+.+.++++.+.+ ..+++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445666665554 45655 6888999999999987432 1233333333332 12466666 666
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 019244 264 RRGTDVFKALALGASGIF 281 (344)
Q Consensus 264 r~g~dv~kalalGAd~V~ 281 (344)
....|.....++|.+.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 667888899999988764
No 429
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.06 E-value=7 Score=37.49 Aligned_cols=42 Identities=12% Similarity=0.489 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHH-HcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~-~~G~d~I~v~ 227 (344)
..|+.++++++..++||+.=+ +.|+++++.++ ..|+|+|-++
T Consensus 181 ~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 181 INWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 378999999999999987755 57999999877 5889999883
No 430
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.05 E-value=4.7 Score=39.37 Aligned_cols=129 Identities=19% Similarity=0.314 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCCcEEEEeec--CHHH----HHHHHHcCCcEEEEccCCCCCCCCc----hhhHHHHHHHHHHccCCCc
Q 019244 187 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV----PATIMALEEVVKATQGRIP 256 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v~--~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g----~~~~~~l~~i~~~~~~~~~ 256 (344)
+++.++++.+ +++||++|--+ +.++ ++.+.+.|-.-|.+.-.|=|.+..+ ...+.+++.+++.. .+|
T Consensus 197 n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lP 273 (352)
T PRK13396 197 NFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLP 273 (352)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCC
Confidence 4566777765 58999999863 5665 4556677887777764443333212 23456777776544 689
Q ss_pred EEEec----CCCC--HHHHHHHHHcCCCEEEEchHHHHHh-hhcChHH-HHHHHHHHHHHHHHHHHHhCC
Q 019244 257 VFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKG-VRRVLEMLREEFELAMALSGC 318 (344)
Q Consensus 257 via~G----GIr~--g~dv~kalalGAd~V~ig~~~l~~~-~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 318 (344)
||+|- |.+. ..-...|+++|||.+++-..+--.- .++|... --+-++.|.++++..-..+|.
T Consensus 274 Vi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 274 IMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99873 3332 2334467889999999887552210 1122211 112345666666666665554
No 431
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.98 E-value=24 Score=33.53 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhcC-CcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 187 SWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 187 ~~~~i~~i~~~~~-~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
..+.++.+|+.++ +++.++.- .+.++| +.+.+.++++|-= ...+..++.+.++++.. ++||++
T Consensus 164 d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~--~ipIa~ 233 (316)
T cd03319 164 DIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS--PLPIMA 233 (316)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--CCCEEE
Confidence 3456888887764 66777653 345554 4556778877731 01123566777777755 799999
Q ss_pred ecCCCCHHHHHHHHHc-CCCEEEEchH
Q 019244 260 DGGVRRGTDVFKALAL-GASGIFIGRP 285 (344)
Q Consensus 260 ~GGIr~g~dv~kalal-GAd~V~ig~~ 285 (344)
++.+.+..|+.+++.. ++|.|++--.
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 9999999999999985 4788877643
No 432
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.86 E-value=3 Score=37.93 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHHHHHHcCCcc--c-cCCHHHHHHHHHHHHHcCCcE-EEeccCCccccccHHHHHhhcCCCCccccccccccccccccc
Q 019244 93 TARAASAAGTIM--V-YKDRNVVAQLVRRAERAGFKA-IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 168 (344)
Q Consensus 93 lA~aA~~~g~~~--~-~~d~~~~~~~i~~a~~ag~~~-l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (344)
..+...++|.-+ + .+......+.++..++.|.++ +.+++.+|.-.... . . ..++.+.. +..
T Consensus 73 ~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~--~---l--------~~~D~vlv--MtV 137 (220)
T PRK08883 73 IIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEY--I---M--------DKVDLILL--MSV 137 (220)
T ss_pred HHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH--H---H--------HhCCeEEE--EEe
Confidence 444455556544 2 222334556778888888886 77788877532111 0 0 01111000 000
Q ss_pred ccchhhHHHHhhcCCCCCcHHHHHHHHHhc-----CCcEEEEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 169 ANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~PvivK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
...-+.|.+ -....+.++++++.. ++|+.+=|..+.+.+..+.++|||.++++.
T Consensus 138 ~PGfgGq~f------i~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 138 NPGFGGQSF------IPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred cCCCCCcee------cHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 000011111 112456677777665 388888777889999999999999998853
No 433
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=87.64 E-value=5.7 Score=36.95 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~vi 258 (344)
+++.++++.+ ++.||.+|-- .++++ ++.+...|-+-|++.-.|-+ +... ...+..++.+++ . ..|||
T Consensus 105 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi 179 (258)
T TIGR01362 105 QTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVI 179 (258)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEE
Confidence 4566777665 5899999986 67776 67788999999988765532 2111 124455665544 3 58999
Q ss_pred Ee---------------cCCCCHHHH--HHHHHcCCCEEEEch
Q 019244 259 LD---------------GGVRRGTDV--FKALALGASGIFIGR 284 (344)
Q Consensus 259 a~---------------GGIr~g~dv--~kalalGAd~V~ig~ 284 (344)
.| ||.|.---. ..|+++|||.+++-.
T Consensus 180 ~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 180 FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 85 565543322 247889999999876
No 434
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=87.58 E-value=8 Score=38.00 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred HHhhcCCCCCcHHHHHHHHHhcCCcEEEEee-----cCH----HHHHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHH
Q 019244 177 YVAGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTA----EDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEE 246 (344)
Q Consensus 177 ~~~~~~~~~~~~~~i~~i~~~~~~PvivK~v-----~~~----~~a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~ 246 (344)
+.....-+.|..+-++++....+-|++.-.. +++ +.+..+.+.|+|+|+..+.-|-+.... ..-...+.+
T Consensus 107 ~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~ 186 (367)
T cd08205 107 LLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACME 186 (367)
T ss_pred HHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHH
Confidence 3333445677788888888877778765322 444 336778899999998876544321111 112223333
Q ss_pred HHHHcc---CCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchHHHH
Q 019244 247 VVKATQ---GRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~~---~~~~via~GGIr~g~dv~----kalalGAd~V~ig~~~l~ 288 (344)
+.+... ++.++++.+.=.+..++. .+..+|||+||+.-+++.
T Consensus 187 av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 187 AVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLVG 235 (367)
T ss_pred HHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 333332 344444433223335554 345689999999988654
No 435
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.58 E-value=9.4 Score=36.93 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhc--CCcEEEEee--cCHHHHHH----HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~--~~PvivK~v--~~~~~a~~----~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~vi 258 (344)
+.+.++.+|+.+ +.++.+..- .+.+++.. +.+.++++|--- ..+..++.+.++++.. ++||+
T Consensus 175 d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~ipi~ 244 (357)
T cd03316 175 DLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEEP--------VPPDDLEGLARLRQAT--SVPIA 244 (357)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcCC--------CCccCHHHHHHHHHhC--CCCEE
Confidence 445688888876 467777653 46666543 344566555310 1122456677777665 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 259 LDGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 259 a~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++..+.+..|+.+++..| +|.|.+-
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 245 AGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred eccccccHHHHHHHHHhCCCCEEecC
Confidence 999999999999999876 7888664
No 436
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=87.56 E-value=7.4 Score=37.27 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeec--CHH---------------------HHHHHHHcCCcEEEEcc
Q 019244 183 DRSLSWKDVKWLQTITKLPILVKGVL--TAE---------------------DARIAVQAGAAGIIVSN 228 (344)
Q Consensus 183 ~~~~~~~~i~~i~~~~~~PvivK~v~--~~~---------------------~a~~~~~~G~d~I~v~~ 228 (344)
.+.++|+.+++|++.+++|+++-+.. +.+ +.+++.+.|+.-|-+.+
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T 256 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDT 256 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeCh
Confidence 35678999999999999999998863 333 78899999999887753
No 437
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.39 E-value=6.2 Score=36.77 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
.+.|+...++||++|-|-.... +-...++.|..+++.+ ++||+.--=|....++..+..+|||+|.+.-..+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 4568889999999998854211 1112367777787776 7999987778889999999999999999876553
No 438
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.39 E-value=19 Score=33.34 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=59.4
Q ss_pred HHHHHHHHHhc--CCcEEEEee--cCHHHH----HHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~--~~PvivK~v--~~~~~a----~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++.+|+.+ +.++.+..- .+.+++ +.+.+.|+++|----. +..++.+.++++.. ++||.+
T Consensus 116 ~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~--------~~d~~~~~~l~~~~--~ipia~ 185 (265)
T cd03315 116 VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLP--------ADDLEGRAALARAT--DTPIMA 185 (265)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCC--------cccHHHHHHHHhhC--CCCEEE
Confidence 45677888776 355655532 455554 4566778888754111 12356667777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 019244 260 DGGVRRGTDVFKALALG-ASGIFIG 283 (344)
Q Consensus 260 ~GGIr~g~dv~kalalG-Ad~V~ig 283 (344)
++.+.+..|+.+++..+ +|.|++-
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999876 7888775
No 439
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=87.21 E-value=6.1 Score=38.62 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=61.1
Q ss_pred HHHHHHhc-CCcEEEEee------cCHHHHHHHHHcCCcEEEEcc----CCCCC------------------CC----C-
Q 019244 191 VKWLQTIT-KLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ------------------LD----Y- 236 (344)
Q Consensus 191 i~~i~~~~-~~PvivK~v------~~~~~a~~~~~~G~d~I~v~~----~gG~~------------------~~----~- 236 (344)
++++.+.. +-|.+++.- .+.+..+++.++|+.+|+++- .|-|. .+ .
T Consensus 115 ~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 194 (351)
T cd04737 115 LEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG 194 (351)
T ss_pred HHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence 34444444 457888774 234567889999999998853 11110 00 0
Q ss_pred -----------chhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 237 -----------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 237 -----------g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
...+++.|.++++.. ++||++- ||.+.+|+.++..+|||++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 195 KGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred cchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEEe
Confidence 012456677777665 6899987 5899999999999999999984
No 440
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=87.18 E-value=6 Score=37.68 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcE---EEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~v---ia~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
++...++|||.|.+- ++.+.+.+.++.+.+. .|+ +..||-.-...+...-.+|.+.|..+...+++
T Consensus 171 a~aY~eAGAD~ifi~---------~~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLE---------AMLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEec---------CCCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 566779999999883 2456677777777763 454 34444322234556677899999999888775
Q ss_pred h
Q 019244 290 L 290 (344)
Q Consensus 290 ~ 290 (344)
.
T Consensus 240 a 240 (294)
T TIGR02319 240 A 240 (294)
T ss_pred H
Confidence 3
No 441
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=87.16 E-value=12 Score=35.33 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred ccccceeecccccccccCC--hhhHHHHH-HHHHcCCcc-ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHH
Q 019244 69 KISMPIMIAPTAMQKMAHP--EGEYATAR-AASAAGTIM-VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 144 (344)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~--~~~~~lA~-aA~~~g~~~-~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~ 144 (344)
+...|++|.-.-++.-... +.-..+.+ .|.++++|. ++.|.....+.+.++.++||+.+++.-..-.+...-+--+
T Consensus 40 e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tk 119 (286)
T COG0191 40 EEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITK 119 (286)
T ss_pred HhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHH
Q ss_pred h------hcCCCCccccccccccccccccc------ccchhhHHHHhhc------------------CCCCCcHHHHHHH
Q 019244 145 N------RFTLPPFLTLKNFQGLDLGKMDE------ANDSGLAAYVAGQ------------------IDRSLSWKDVKWL 194 (344)
Q Consensus 145 ~------~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------------~~~~~~~~~i~~i 194 (344)
. .++...-.-...++..+.+.... .......+++... +.+.++++.++++
T Consensus 120 evv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i 199 (286)
T COG0191 120 EVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEI 199 (286)
T ss_pred HHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHH
Q ss_pred HHhcCCcEEEEee--cCHHHHHHHHHcCCcEEEEcc
Q 019244 195 QTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 195 ~~~~~~PvivK~v--~~~~~a~~~~~~G~d~I~v~~ 228 (344)
++.+++|+++-+. .+.++.+++++.|+.-|-+.+
T Consensus 200 ~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~T 235 (286)
T COG0191 200 QEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDT 235 (286)
T ss_pred HHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEeeCc
No 442
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=87.11 E-value=2.2 Score=39.21 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=51.7
Q ss_pred HHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHH
Q 019244 216 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 288 (344)
Q Consensus 216 ~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~ 288 (344)
+...++|+|+++|+. .+.++..+.|..+.+.. ++|+++-+|+. .+.+.+.|.. ||.+.+|+.+=.
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEcc
Confidence 667789999998752 13467888888887776 59999999986 7778888877 999999997743
No 443
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=87.06 E-value=8 Score=36.05 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+.|+...++||++|-|-.-. .+-..+++.|..+++.+ ++|++.-==|-+..++.++.++|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 55788889999999885421 12234677888888877 7999998889999999999999999998766554
No 444
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=87.03 E-value=3.9 Score=40.76 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhc---CCcEE-EEeecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~---~~Pvi-vK~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..|+.|.++++.+ ++||+ +.++.+.+|+...+.+|||+|.+..
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 3688999999887 78987 5668999999999999999999864
No 445
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.03 E-value=5.8 Score=38.26 Aligned_cols=43 Identities=26% Similarity=0.630 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHhcC-CcEEEEe-ecCHHHHHHHHH-cCCcEEEEc
Q 019244 185 SLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~-~PvivK~-v~~~~~a~~~~~-~G~d~I~v~ 227 (344)
+.+|+.|.++++..+ +||+.=+ |.++++++..++ .|+|+|.+.
T Consensus 183 ~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 183 PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 368999999999998 9999866 579999988776 579999884
No 446
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.01 E-value=4.1 Score=37.95 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH-HHHHHHHcc-CCCc-EEEecC-
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-LEEVVKATQ-GRIP-VFLDGG- 262 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~-l~~i~~~~~-~~~~-via~GG- 262 (344)
++++++. +-|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++- +..++...+ .+.| |++|-+
T Consensus 4 lr~l~~~-~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f 82 (254)
T cd06557 4 LQKMKKA-GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF 82 (254)
T ss_pred HHHHHhC-CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 3444332 5688877778888999999999999986422111 12344444432 222222222 2578 888765
Q ss_pred --CCC-HHH----HHHHHH-cCCCEEEEc
Q 019244 263 --VRR-GTD----VFKALA-LGASGIFIG 283 (344)
Q Consensus 263 --Ir~-g~d----v~kala-lGAd~V~ig 283 (344)
..+ .++ +.+.+. .||++|-+-
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~aVkiE 111 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGADAVKLE 111 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEEc
Confidence 434 333 577788 999999993
No 447
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.90 E-value=7 Score=36.72 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCch-hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 287 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~k----alalGAd~V~ig~~~l 287 (344)
++.+.+.|+|+|.+.|+-|-...-.. ...+.+..+++.. +++ +...|+ .+-.|+++ |-.+|||++++..|++
T Consensus 26 i~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~-~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 26 CENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGS-LNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCc-CCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 45678899999999776443221111 1233445555554 332 333443 33444443 2338999999999987
Q ss_pred HHhhhcChHHHHHHHHHHHH
Q 019244 288 YSLAAEGEKGVRRVLEMLRE 307 (344)
Q Consensus 288 ~~~~~~G~~~v~~~l~~l~~ 307 (344)
+.. ..++++.+++..+.+
T Consensus 103 ~~~--~~~~~i~~yf~~v~~ 120 (279)
T cd00953 103 FPG--IPEEWLIKYFTDISS 120 (279)
T ss_pred CCC--CCHHHHHHHHHHHHh
Confidence 631 135677777777666
No 448
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=86.83 E-value=15 Score=34.76 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=73.7
Q ss_pred cCHHHHHHH-HHcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHcCCCEE
Q 019244 208 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~-~~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~g~-dv~kalalGAd~V 280 (344)
.+|++|+.. .+.|+|.+-|+- ||..... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..=|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 467887665 589999999873 5533111 134 4678999988774 69999977665555 8889999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-++|-+.++... +. ..-.....+.+++.++..|..+|+.
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654321 00 0123344456777778888888764
No 449
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=86.62 E-value=20 Score=33.98 Aligned_cols=107 Identities=17% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+- ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887655 69999999874 5533 2333 467899998887 689888665444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 228 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 228 NVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654221 00 1123344456677777777777754
No 450
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=86.40 E-value=4 Score=35.87 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+..+.+.++.|+++- ++.+.+.+.|+|++.+.... . .. ..+++... -..+....++|..++
T Consensus 48 ~l~~~~~~~~~~l~i~-----~~~~la~~~g~~GvHl~~~~-------~-~~---~~~r~~~~--~~~~ig~s~h~~~e~ 109 (196)
T TIGR00693 48 KLQELCRRYGVPFIVN-----DRVDLALALGADGVHLGQDD-------L-PA---SEARALLG--PDKIIGVSTHNLEEL 109 (196)
T ss_pred HHHHHHHHhCCeEEEE-----CHHHHHHHcCCCEEecCccc-------C-CH---HHHHHhcC--CCCEEEEeCCCHHHH
Confidence 4556666668888874 25677889999999874210 1 11 22232332 123555679999999
Q ss_pred HHHHHcCCCEEEEchHH
Q 019244 270 FKALALGASGIFIGRPV 286 (344)
Q Consensus 270 ~kalalGAd~V~ig~~~ 286 (344)
.++..+|||.+.+|.-|
T Consensus 110 ~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIF 126 (196)
T ss_pred HHHhHcCCCEEEECCcc
Confidence 99999999999998543
No 451
>TIGR03586 PseI pseudaminic acid synthase.
Probab=86.17 E-value=34 Score=33.12 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCcc--------------------------------------ccCCHHHHHH
Q 019244 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIM--------------------------------------VYKDRNVVAQ 114 (344)
Q Consensus 73 Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~--------------------------------------~~~d~~~~~~ 114 (344)
|++|+-+|......-+--..|.++|+++|.-. +....+...+
T Consensus 2 ~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~ 81 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKE 81 (327)
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHH
Q ss_pred HHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCCcccccccccccccccccccchhhHHHHhhcCCCCC-cHHHHHH
Q 019244 115 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKW 193 (344)
Q Consensus 115 ~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 193 (344)
+.+.+++.|...+ +..+.....+....++.+ +-.-+.++. ++..++.
T Consensus 82 L~~~~~~~Gi~~~-----stpfd~~svd~l~~~~v~---------------------------~~KI~S~~~~n~~LL~~ 129 (327)
T TIGR03586 82 LFERAKELGLTIF-----SSPFDETAVDFLESLDVP---------------------------AYKIASFEITDLPLIRY 129 (327)
T ss_pred HHHHHHHhCCcEE-----EccCCHHHHHHHHHcCCC---------------------------EEEECCccccCHHHHHH
Q ss_pred HHHhcCCcEEEEee-cCHHH----HHHHHHcCC-cEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHH
Q 019244 194 LQTITKLPILVKGV-LTAED----ARIAVQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 267 (344)
Q Consensus 194 i~~~~~~PvivK~v-~~~~~----a~~~~~~G~-d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~ 267 (344)
+.+. ++||++|.. .+.++ +..+.+.|. +.+.+...-.+........+..+..+++.. .+||..|.=-.--.
T Consensus 130 va~~-gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SDHt~G~~ 206 (327)
T TIGR03586 130 VAKT-GKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSDHTLGIL 206 (327)
T ss_pred HHhc-CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeCCCCchH
Q ss_pred HHHHHHHcCCCEEEEchHHHHHhhhcChHH----HHHHHHHHHHHHHHHHHHhC
Q 019244 268 DVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSG 317 (344)
Q Consensus 268 dv~kalalGAd~V~ig~~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G 317 (344)
-...|+++||+ +|=+.|-..-...|.+. --+-++.|.++++..-..+|
T Consensus 207 ~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg 258 (327)
T TIGR03586 207 APVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALG 258 (327)
T ss_pred HHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhC
No 452
>PRK02227 hypothetical protein; Provisional
Probab=85.94 E-value=8.2 Score=35.55 Aligned_cols=74 Identities=30% Similarity=0.298 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHcCCcEEEEccCC-CCCCCCchhhHHHHHHHHHHccCCCcEEEe-cCCC-CHHHH----HHHHHcCCCEE
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVR-RGTDV----FKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~~~via~-GGIr-~g~dv----~kalalGAd~V 280 (344)
.+.++|..+.+.|+|.|++=+-. |. -|--....+++|++.++++.||-+. |.+- .+..+ ..+-+.|+|.|
T Consensus 8 r~~eEA~~Al~~GaDiIDvK~P~~Ga---LGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVKNPKEGS---LGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred CCHHHHHHHHhcCCCEEEccCCCCCC---CCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 57899999999999999997631 11 1223456778888888777888884 4443 22222 23334699999
Q ss_pred EEch
Q 019244 281 FIGR 284 (344)
Q Consensus 281 ~ig~ 284 (344)
=+|-
T Consensus 85 KvGl 88 (238)
T PRK02227 85 KVGL 88 (238)
T ss_pred EEcC
Confidence 9984
No 453
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=85.84 E-value=2.8 Score=39.09 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCC--CCchhhHHHHHHHHHHccC--CCcEEEecCCCCHH--HHHHHHHcCCCEEEEc
Q 019244 210 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT--DVFKALALGASGIFIG 283 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~--~~~via~GGIr~g~--dv~kalalGAd~V~ig 283 (344)
.++++.+.+.|+|+|.|.|.+..-. +.++.+..++..+...++. .+|+ ..-=+++.. -+.-|.+.||++|-+-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~-GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPL-GINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCe-eeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 4789999999999999999876533 5566666665555433322 3342 111123222 2333456899998773
No 454
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.62 E-value=25 Score=33.33 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=71.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +-|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4688887655 69999999874 5543 2333 567799998877 689888665444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++.++..|..+|+.
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0112333455666777777777754
No 455
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=85.47 E-value=9.1 Score=35.88 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH-H---HHHHHHccCCC-cEE
Q 019244 188 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVF 258 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~-l---~~i~~~~~~~~-~vi 258 (344)
...++++++. +-|+++=.+-+.-.|+.+.++|+|.|-++...+. ..|.+.-+++- + +.+++.. +. +|+
T Consensus 4 ~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vv 80 (264)
T PRK00311 4 ISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVV 80 (264)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEE
Confidence 3345554443 5688887778889999999999999987422110 12344444432 2 3333322 44 588
Q ss_pred EecCCC----CHHH----HHHHHH-cCCCEEEE
Q 019244 259 LDGGVR----RGTD----VFKALA-LGASGIFI 282 (344)
Q Consensus 259 a~GGIr----~g~d----v~kala-lGAd~V~i 282 (344)
+|-++. +..+ +.+.+. .||++|-+
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 876644 3355 567777 89999999
No 456
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=85.42 E-value=18 Score=32.78 Aligned_cols=91 Identities=29% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcC-CcEEE--Eeec-CHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEec-C
Q 019244 188 WKDVKWLQTITK-LPILV--KGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-G 262 (344)
Q Consensus 188 ~~~i~~i~~~~~-~Pviv--K~v~-~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~G-G 262 (344)
.+.|+.+|+.++ .+|+. |..- ..-+++.+.++|+|+++|++.. -.+|+....+.++.. ...+..+= |
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~~ 115 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLIG 115 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEeec
Confidence 357999999885 44443 3322 2356899999999999998642 135555444444433 34455543 7
Q ss_pred CCCHHHHHHHHH-cCCCEEEEchHH
Q 019244 263 VRRGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kala-lGAd~V~ig~~~ 286 (344)
..++.+..+-+. +|.+.+.+=+..
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecc
Confidence 999999999999 999999887654
No 457
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.27 E-value=6.4 Score=33.36 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc----cCCCcEEEecC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGG 262 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~----~~~~~via~GG 262 (344)
+.+..+-...+.-|+.-+. .|+++ +..|.+..++.|.+|+.-|. ..+.++++.+.+ .+++. +..||
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~GG 101 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVGG 101 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-EeecC
Confidence 4555555556777777665 56766 56677999999999975332 122333333332 23444 47799
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 019244 263 VRRGTDVFKALALGASGIFI 282 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~i 282 (344)
+-...|..+.-.+|.+.+.-
T Consensus 102 vip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 102 VIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred ccCchhHHHHHHhCcceeeC
Confidence 99999988888899988763
No 458
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.15 E-value=8.2 Score=32.88 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCcEEEEeec-CHHH-----HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecC
Q 019244 189 KDVKWLQTITKLPILVKGVL-TAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 262 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~-~~~~-----a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GG 262 (344)
+.++.+++..++|+++.... +..+ ++.+.++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 35677777778999888752 2222 468999999999996532210 001334566666655 3577777654
Q ss_pred CCCHHHHHHHHHcCCCEEEEchHH
Q 019244 263 VRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 263 Ir~g~dv~kalalGAd~V~ig~~~ 286 (344)
.....+...+...|++.+.+...+
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCc
Confidence 443333322467899999987654
No 459
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.11 E-value=8 Score=36.12 Aligned_cols=93 Identities=26% Similarity=0.316 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEE
Q 019244 187 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 258 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~vi 258 (344)
+++.++++.+ ++.||.+|-- .++++ ++.....|-.-|++.-.|-+ +... ...+..++.+.+ . .+|||
T Consensus 113 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi 187 (264)
T PRK05198 113 QTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVI 187 (264)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEE
Confidence 4566777765 5899999976 67776 67788899999988765532 2111 124455665543 3 48999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHcCCCEEEEch
Q 019244 259 LD---------------GGVRRGTD--VFKALALGASGIFIGR 284 (344)
Q Consensus 259 a~---------------GGIr~g~d--v~kalalGAd~V~ig~ 284 (344)
.| ||-|.--- +..|+++|||.+++-.
T Consensus 188 ~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 188 FDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 86 55554322 2367889999999875
No 460
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=85.04 E-value=20 Score=30.07 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCcEEEEee-cCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHc---c-CCCcEEEecCC
Q 019244 190 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDGGV 263 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v-~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~-~~~~via~GGI 263 (344)
.+..+-+..+.-|+-=++ .++++ ++.+.+.++|.|-+|..-++ +...++++.+.+ + .+++++.-|++
T Consensus 20 iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~-------~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGH-------GEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc-------CHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 445554555666665444 45554 77888999999999875443 222233333222 1 24554444432
Q ss_pred -CCHHHH----HHHHHcCCCEEEE
Q 019244 264 -RRGTDV----FKALALGASGIFI 282 (344)
Q Consensus 264 -r~g~dv----~kalalGAd~V~i 282 (344)
-...|. .++.++|.+.|+-
T Consensus 93 vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 93 VVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred CcChhhhHHHHHHHHHcCCCEEEC
Confidence 334453 3578899998863
No 461
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.83 E-value=9.2 Score=36.60 Aligned_cols=41 Identities=20% Similarity=0.656 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHH-HcCCcEEEE
Q 019244 186 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIV 226 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~-~~G~d~I~v 226 (344)
..|+.++.+++.+++||+.=+ +.+++++..+. ..|+|+|.+
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 368899999999999988744 58999999998 688999988
No 462
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.80 E-value=4.3 Score=37.47 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=55.3
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHHH----HHHHHHHccCCCcEEEecCC--CCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~~----l~~i~~~~~~~~~via~GGI--r~g~d 268 (344)
+-|+++-++-+.-.|+.+.++|++++.+++++.. ..|.+.-+++. +..|.... .+|+++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688877778888999999999999999875432 12334334332 33333333 7999998755 33334
Q ss_pred H----HHHHHcCCCEEEE
Q 019244 269 V----FKALALGASGIFI 282 (344)
Q Consensus 269 v----~kalalGAd~V~i 282 (344)
+ .+.+..|+++|.+
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3455689999999
No 463
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=84.78 E-value=24 Score=36.33 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCCcEEEecCCCCHHHHHHHHH------cC-----CCEEEEchHHHH
Q 019244 253 GRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVY 288 (344)
Q Consensus 253 ~~~~via~GGIr~g~dv~kala------lG-----Ad~V~ig~~~l~ 288 (344)
+++-+++-|||.++.|.+.+|- .| .|.+.+|+..|-
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 4899999999999999987762 33 699999998875
No 464
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=84.75 E-value=10 Score=36.02 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhc--CCcEEE-EeecCHHHHHHHHHcCCcEEEEcc
Q 019244 186 LSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 186 ~~~~~i~~i~~~~--~~Pviv-K~v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..|+.|.++++.+ ++||+. .++.+.+|+.+.+.+|||+|.+..
T Consensus 237 ~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 237 IALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 4689999999999 799865 446899999999999999998854
No 465
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=84.70 E-value=5.2 Score=38.03 Aligned_cols=83 Identities=23% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhH----HHHHHHHHHccCCCcEEEec--CCCCHHH
Q 019244 199 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 268 (344)
Q Consensus 199 ~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~----~~l~~i~~~~~~~~~via~G--GIr~g~d 268 (344)
+-++++-++.+.-.|+.+.++|.++|.+|++|=. ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777778888899999999999999875311 134443333 3344555554 79999964 6666556
Q ss_pred H---H-HHHHcCCCEEEEc
Q 019244 269 V---F-KALALGASGIFIG 283 (344)
Q Consensus 269 v---~-kalalGAd~V~ig 283 (344)
+ + ++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 3 4556899888883
No 466
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=84.50 E-value=9.1 Score=37.43 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=63.6
Q ss_pred HHHHHHHHhcC-CcEEEEeec----CHHHHHHHHHc-CCcE--EEEccCCCCCCCC--------------chhhHHHHHH
Q 019244 189 KDVKWLQTITK-LPILVKGVL----TAEDARIAVQA-GAAG--IIVSNHGARQLDY--------------VPATIMALEE 246 (344)
Q Consensus 189 ~~i~~i~~~~~-~PvivK~v~----~~~~a~~~~~~-G~d~--I~v~~~gG~~~~~--------------g~~~~~~l~~ 246 (344)
+.++..++.++ .|+++ ++. +.+++..+.++ |.|. |-++.+|. ++|. ..-+.+.+.+
T Consensus 191 ~A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~ 268 (352)
T PRK07188 191 EACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKA 268 (352)
T ss_pred HHHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHH
Confidence 45677777664 35543 343 67778777777 8777 87776433 1111 0023455666
Q ss_pred HHHHc---c-CCCcEEEecCCCCHHHHHHHHHcC--CCEEEEchHHHH
Q 019244 247 VVKAT---Q-GRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVY 288 (344)
Q Consensus 247 i~~~~---~-~~~~via~GGIr~g~dv~kalalG--Ad~V~ig~~~l~ 288 (344)
+++.+ + .++.|++||||. ...+....+.| +|..+||+.+..
T Consensus 269 vr~~Ld~~g~~~vkI~aSgGin-e~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 269 LRKALDENGGKHVKIIVSSGFD-AKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHHhhCCCCCcEEEEeCCCC-HHHHHHHHHcCCCccEEecCccccc
Confidence 66554 2 478899999995 77777777789 699999998764
No 467
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=84.48 E-value=13 Score=35.92 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC-CcEEEEee------cCHHHHHHHH-HcCCcEEEEccCCCCC--CCCchhhH----HHHHHHHHHccC
Q 019244 188 WKDVKWLQTITK-LPILVKGV------LTAEDARIAV-QAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQG 253 (344)
Q Consensus 188 ~~~i~~i~~~~~-~PvivK~v------~~~~~a~~~~-~~G~d~I~v~~~gG~~--~~~g~~~~----~~l~~i~~~~~~ 253 (344)
|+.++.+|+..+ .|+++-.- .+++++..+. ..++|++.+.-..... ...+.... +.|..+++.+
T Consensus 100 ~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-- 177 (326)
T cd02811 100 AESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-- 177 (326)
T ss_pred hhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc--
Confidence 456777777775 88776442 1566655444 4789999884211100 11122222 4566666655
Q ss_pred CCcEEE--ecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 254 RIPVFL--DGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 254 ~~~via--~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
++||++ .|--.+..++.++...|+|++-++.
T Consensus 178 ~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 789998 3433567777777779999999864
No 468
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=84.43 E-value=25 Score=34.34 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=75.6
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 266 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g------------- 266 (344)
.+|++|+... +.|+|.+-++. ||-+.....| -.++.|.+|++.+ +++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4688887755 57999998874 5533210012 2456788888876 25999998876554
Q ss_pred ---------HHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 267 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 267 ---------~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+++.|++.+|..=|-+++-+.++... .. ..-.....+.+++.....|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999977554221 11 11233444567778888888888653
No 469
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.17 E-value=5.5 Score=37.62 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=62.2
Q ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCC----CCCCchhhHH----HHHHHHHHccCCCcEEEec-
Q 019244 191 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 261 (344)
Q Consensus 191 i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~----~~~~g~~~~~----~l~~i~~~~~~~~~via~G- 261 (344)
++.+.+. +-|+.+-++.++-.|+.+.++|.+++.+|+.|=. -.|.+..|++ ..++|.+.+ ++||++|.
T Consensus 10 fR~l~~~-~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~d 86 (289)
T COG2513 10 FRALHAS-GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDID 86 (289)
T ss_pred HHHHHhC-CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEecc
Confidence 3444442 5688888889999999999999999999975421 1345555543 234444444 89999964
Q ss_pred -CCCCHHHHH----HHHHcCCCEEEEch
Q 019244 262 -GVRRGTDVF----KALALGASGIFIGR 284 (344)
Q Consensus 262 -GIr~g~dv~----kalalGAd~V~ig~ 284 (344)
|..++..++ ++...|+.++.|--
T Consensus 87 tGfG~~~nvartV~~~~~aG~agi~iED 114 (289)
T COG2513 87 TGFGEALNVARTVRELEQAGAAGIHIED 114 (289)
T ss_pred CCCCcHHHHHHHHHHHHHcCcceeeeee
Confidence 777655555 45568998887753
No 470
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=84.09 E-value=42 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHc----CCC
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL----GAS 278 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalal----GAd 278 (344)
.+...+..+...++.+..+... .......|.-+++. ..|+|.|.|+.+-+++-+++.. |..
T Consensus 111 fd~~svd~l~~~~~~ayKIaS~-------E~~~~plik~iA~~---~kPiIlSTGma~~~ei~~av~~~r~~g~~ 175 (347)
T COG2089 111 FDLTAVDLLESLNPPAYKIASG-------EINDLPLIKYIAKK---GKPIILSTGMATIEEIEEAVAILRENGNP 175 (347)
T ss_pred CCHHHHHHHHhcCCCeEEecCc-------cccChHHHHHHHhc---CCCEEEEcccccHHHHHHHHHHHHhcCCC
Confidence 5678899999999999999532 12234455555432 5699999999999999999873 765
No 471
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=83.82 E-value=22 Score=34.67 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=75.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCC---------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 264 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr--------------- 264 (344)
.+|++|+... +.|+|.+-|+. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887755 68999998874 5533211012 24678899988773 58988866543
Q ss_pred -------CHHHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 265 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 265 -------~g~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
.-+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++.++..|..+|+..
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3477899999999999999987654321 00 11233445567888888888888753
No 472
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=83.81 E-value=34 Score=32.38 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=71.3
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCchh--hHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 280 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~~--~~~~l~~i~~~~~~~~~via~GGIr~-g~dv~kalalGAd~V 280 (344)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.++++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 67999999874 5543 2333 467899998877 689988765444 456778999999999
Q ss_pred EEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 019244 281 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 319 (344)
Q Consensus 281 ~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 319 (344)
-+++-+..+... .. ..-.....+.+++..+..|..+|+.
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654210 00 0113334455666777777777654
No 473
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=83.70 E-value=13 Score=32.63 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=54.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cC-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
..+.++++++.++.|+.+... .+ .+.++.+.++|+|+|.+ |++.. ....+.+..+.+ ..+.+..+-.-.
T Consensus 45 ~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~---~~~~~g~~~~~~ 115 (211)
T cd00429 45 GPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE---LGMKAGVALNPG 115 (211)
T ss_pred CHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH---CCCeEEEEecCC
Confidence 456788888766566654443 22 35688888999999988 43310 112233333322 245555554554
Q ss_pred CHHHHHHHHHcCCCEEEEch
Q 019244 265 RGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ig~ 284 (344)
+..+..+.+..++|.+.++.
T Consensus 116 ~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 116 TPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 56677777777799998875
No 474
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=83.60 E-value=2.2 Score=37.13 Aligned_cols=43 Identities=35% Similarity=0.443 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccC
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH 229 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~ 229 (344)
--+.++++.++++.||+..|- .+.|++..++++||-++..|+.
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 346899999999999999874 7899999999999999987764
No 475
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=83.42 E-value=13 Score=35.79 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcc-------------------ccCCHHHHHHHHHHHHHcCCcEEEeccCCccccccHHHHHhhcCCCC
Q 019244 91 YATARAASAAGTIM-------------------VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 151 (344)
Q Consensus 91 ~~lA~aA~~~g~~~-------------------~~~d~~~~~~~i~~a~~ag~~~l~~tvd~~~~g~r~~~~~~~~~~~~ 151 (344)
..+++.|..+|+.. .+.||+...+++++- |+++|.+.+.+.+.
T Consensus 129 ~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~T---gvD~LAvaiGt~HG--------------- 190 (321)
T PRK07084 129 KKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKT---GVDSLAISIGTSHG--------------- 190 (321)
T ss_pred HHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHh---CCCEEeeccccccc---------------
Q ss_pred cccccccccccccccccccchhhHHHHhhcC----CCCCcHHHHHHHHHhc-CCcEEEEeec------------------
Q 019244 152 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQI----DRSLSWKDVKWLQTIT-KLPILVKGVL------------------ 208 (344)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~~-~~PvivK~v~------------------ 208 (344)
....+ .+.++|+.+++|++.+ ++|+++-+..
T Consensus 191 --------------------------~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~ 244 (321)
T PRK07084 191 --------------------------AYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLK 244 (321)
T ss_pred --------------------------cccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccc
Q ss_pred -----CHHHHHHHHHcCCcEEEEcc
Q 019244 209 -----TAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 209 -----~~~~a~~~~~~G~d~I~v~~ 228 (344)
+.++.+++++.|+.-|-++.
T Consensus 245 ~~~Gi~~e~~~kai~~GI~KINi~T 269 (321)
T PRK07084 245 DAIGIPEEQLRKAAKSAVCKINIDS 269 (321)
T ss_pred cCCCCCHHHHHHHHHcCCceeccch
No 476
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=83.32 E-value=5.4 Score=37.73 Aligned_cols=98 Identities=24% Similarity=0.216 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCc------------hhhHHHHHHHHHHcc--CCC
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV------------PATIMALEEVVKATQ--GRI 255 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g------------~~~~~~l~~i~~~~~--~~~ 255 (344)
.++.+.+. ++|+-+=.+.|++.+..+.++|+++|...- ||-.+++ .+.+..+.++.+... +--
T Consensus 123 A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~AGa~~isp~v--gRld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 199 (287)
T PF00923_consen 123 AIKELEAE-GIPVNATLVFSVEQAIAAAQAGASYISPYV--GRLDDWGKRLQGEDALKGEHDGVALAKEIYQYYRKYGYK 199 (287)
T ss_dssp HHHHHHHT-T-EEEEEEE-SHHHHHHHHHTT-SEEEEBH--HHHHHHHHHHSCCHHCGGGSHHHHHHHHHHHHHHHHTES
T ss_pred HHHHHhhC-CceEEEEecccHHHHHHHHhcccceEeeeH--HHHHHHhhhhcccccccccccHHHHHHHHHHHHHHhCCC
Confidence 34555543 899999999999999999999999987742 2211222 234444444444321 213
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHHhhh
Q 019244 256 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 292 (344)
Q Consensus 256 ~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~~~~ 292 (344)
+-+....+|+..++. ..+|+|.|-+.-..+..+..
T Consensus 200 t~v~~as~r~~~~v~--~l~G~d~vTip~~~l~~l~~ 234 (287)
T PF00923_consen 200 TKVLAASFRNVQQVL--ALAGADIVTIPPKVLEALLE 234 (287)
T ss_dssp SEEEEBSSSSHHHHH--HTTTSSEEEEEHHHHHHHHH
T ss_pred cceeccCcCCHHHHH--HHHCCCeEECCHHHHHHHHh
Confidence 445557799999998 77899999888888776543
No 477
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=83.18 E-value=28 Score=33.95 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=75.1
Q ss_pred cCHHHHHHHH-HcCCcEEEEcc---CCCCCCCCch----hhHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 019244 208 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 266 (344)
Q Consensus 208 ~~~~~a~~~~-~~G~d~I~v~~---~gG~~~~~g~----~~~~~l~~i~~~~~~~~~via~GGIr~g------------- 266 (344)
.+|++|.... +-|+|.+-++. ||-+.....| -.++.|.+|++.+. ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887766 57999998874 5533111011 24568899988772 5999998765544
Q ss_pred ---------HHHHHHHHcCCCEEEEchHHHHHhhh-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019244 267 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 320 (344)
Q Consensus 267 ---------~dv~kalalGAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 320 (344)
+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++-++..|..+|+..
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999977554221 00 11233344567777888888888754
No 478
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=83.11 E-value=0.48 Score=43.12 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHcCCcEEEEccCCCCCCCCc-hhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHH
Q 019244 208 LTAEDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 286 (344)
Q Consensus 208 ~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~ 286 (344)
.|.++++.+.+.|++-+++. .+......| ..+..-+..+++..+.+.+++..||||- ....+.-..+.|.+.+|||+
T Consensus 117 ~t~~~~~~l~~~g~~~~v~h-~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~-~~~~~~dq~rvd~iVVGR~I 194 (218)
T PRK13305 117 WTLDDARDWHRIGVRQAIYH-RGRDAQASGQQWGEADLARMKALSDIGLELSITGGITP-ADLPLFKDIRVKAFIAGRAL 194 (218)
T ss_pred cCcchHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCc-cccccccccCCCEEEECCcc
Confidence 45566666777787643321 010000111 1222335555555555677999999993 33334556788999999999
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHHH
Q 019244 287 VYSLAAEGEKGVRRVLEMLREEFEL 311 (344)
Q Consensus 287 l~~~~~~G~~~v~~~l~~l~~el~~ 311 (344)
..+ +......+.+.+++..
T Consensus 195 t~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 195 AGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred cCC------CCHHHHHHHHHHHHHH
Confidence 753 2222345566666644
No 479
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.74 E-value=12 Score=36.14 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=53.5
Q ss_pred HHHHHHHcCCcEEEEcc---CCCCCCCCc---hhhHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 019244 212 DARIAVQAGAAGIIVSN---HGARQLDYV---PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 212 ~a~~~~~~G~d~I~v~~---~gG~~~~~g---~~~~~~l~~i~~~~~~-~~~via~GGIr~g~dv~kalalGAd~V~ig~ 284 (344)
.+..+.++|++.|-++. -||..++.| .++++.+.++++.++. ++-++..-|+.+..|+-++...|++.|-++.
T Consensus 29 ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~ 108 (333)
T TIGR03217 29 IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVAT 108 (333)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEe
Confidence 35678899999999962 134444433 3566777777776542 4445666788899999999999999999886
Q ss_pred H
Q 019244 285 P 285 (344)
Q Consensus 285 ~ 285 (344)
.
T Consensus 109 ~ 109 (333)
T TIGR03217 109 H 109 (333)
T ss_pred c
Confidence 4
No 480
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=82.70 E-value=5.4 Score=39.52 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=131.7
Q ss_pred hcccccceeecccC-CCCCCCcceeec-ccccccceeecccccccccCChhhHHHHHHHHHcCCcc-ccC--CHHHHHHH
Q 019244 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-VYK--DRNVVAQL 115 (344)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~-~~~--d~~~~~~~ 115 (344)
-.|+++.|.|.-.. ..++||+++.|- ..+++.|++.|||.- -.|..+|.+.+.+|... ++. +|+.....
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDT------Vtes~MAiaMAl~ggIg~IHhNctpe~QA~~ 103 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDT------VTESEMAIAMALLGGIGFIHHNCTPEDQADM 103 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCcc------cchhHHHHHHHhcCCceeeecCCCHHHHHHH
Confidence 56999999998763 456899999974 578999999999952 24667888888887655 433 57777788
Q ss_pred HHHHHHc--CC--cEEEeccCCccccccHHHHHhhcC-CCCc----ccccccccccccccc--cccchhhHHHHhhcC--
Q 019244 116 VRRAERA--GF--KAIALTVDTPRLGRREADIKNRFT-LPPF----LTLKNFQGLDLGKMD--EANDSGLAAYVAGQI-- 182 (344)
Q Consensus 116 i~~a~~a--g~--~~l~~tvd~~~~g~r~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 182 (344)
+++++.. |+ ..+++.++..+....+.-.+.+|. +|.- .+.+.++.+....+. ..+....++.+.+..
T Consensus 104 v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~~~~ 183 (503)
T KOG2550|consen 104 VRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKNPVT 183 (503)
T ss_pred HHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhccccccc
Confidence 8888864 33 234555554443323333334443 3321 111111111110000 011111222222211
Q ss_pred -CCCCcHHHHHHHHHhc---CCcEEE------------------------Ee----------ecC----HHHHHHHHHcC
Q 019244 183 -DRSLSWKDVKWLQTIT---KLPILV------------------------KG----------VLT----AEDARIAVQAG 220 (344)
Q Consensus 183 -~~~~~~~~i~~i~~~~---~~Pviv------------------------K~----------v~~----~~~a~~~~~~G 220 (344)
+...+++...++-+.. ++||+= |. +-+ .+....+.++|
T Consensus 184 ~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aG 263 (503)
T KOG2550|consen 184 GAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAG 263 (503)
T ss_pred ccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhhhcC
Confidence 1112333333332222 234332 21 111 23356788999
Q ss_pred CcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 019244 221 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 283 (344)
Q Consensus 221 ~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig 283 (344)
+|.|+++..-|. ..-.++.+..+.+.. ++++||+ |-+-+.+.+...++.|||.+=+|
T Consensus 264 vdvviLDSSqGn----S~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 264 VDVVILDSSQGN----SIYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred CcEEEEecCCCc----chhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 999999865442 123456677776665 3788887 77888999999999999986544
No 481
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=82.54 E-value=14 Score=33.91 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC--CcEEEEee-------cCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEE
Q 019244 189 KDVKWLQTITK--LPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 189 ~~i~~i~~~~~--~PvivK~v-------~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via 259 (344)
..|++|++..+ .|+..... .-..-+..+...|+|+|+|.-.|....+.....+..+.+..+....+..+++
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVA 119 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVA 119 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEE
Q ss_pred ecCCCC-------HHHHHHHHH-cCCCEEEEch
Q 019244 260 DGGVRR-------GTDVFKALA-LGASGIFIGR 284 (344)
Q Consensus 260 ~GGIr~-------g~dv~kala-lGAd~V~ig~ 284 (344)
.+=--. +.++.+..+ .|++.+|+-|
T Consensus 120 v~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 120 VGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred EEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
No 482
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=82.52 E-value=14 Score=35.00 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHH
Q 019244 211 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 287 (344)
Q Consensus 211 ~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l 287 (344)
+-++...++|||.|.+-. + ..+.+.+.++.+.++. ++|++...+-.-...+...-.+|.+.|..+..++
T Consensus 173 ~Ra~ay~eAGAD~ifv~~--~------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHS--R------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred HHHHHHHHcCCCEEEecC--C------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 336778999999999841 1 2345555556555532 5688765431111235556678999999998777
Q ss_pred HH
Q 019244 288 YS 289 (344)
Q Consensus 288 ~~ 289 (344)
++
T Consensus 245 ~a 246 (285)
T TIGR02320 245 RA 246 (285)
T ss_pred HH
Confidence 65
No 483
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=82.42 E-value=6.4 Score=38.39 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 019244 190 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 269 (344)
Q Consensus 190 ~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv 269 (344)
.+..+.+.++.++++- +....+...|+|+|.+... | .+ +.+.++.++.+ .+.....+|..++
T Consensus 192 ~L~~l~~~~~~~lIIN-----D~vdlAl~~~aDGVHLgq~-----d--l~----~~~aR~llg~~--~iIG~S~Hs~~e~ 253 (347)
T PRK02615 192 KLKELCHRYGALFIVN-----DRVDIALAVDADGVHLGQE-----D--LP----LAVARQLLGPE--KIIGRSTTNPEEM 253 (347)
T ss_pred HHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEEeChh-----h--cC----HHHHHHhcCCC--CEEEEecCCHHHH
Confidence 4666777778887764 3456788899999977321 1 11 22334334322 2445567899999
Q ss_pred HHHHHcCCCEEEEchH
Q 019244 270 FKALALGASGIFIGRP 285 (344)
Q Consensus 270 ~kalalGAd~V~ig~~ 285 (344)
.+|...|||.|++|.-
T Consensus 254 ~~A~~~GaDYI~lGPv 269 (347)
T PRK02615 254 AKAIAEGADYIGVGPV 269 (347)
T ss_pred HHHHHcCCCEEEECCC
Confidence 9999999999999943
No 484
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=82.26 E-value=15 Score=33.63 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhcCCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
.+|+.|++++ .++||+.= ++.+.+++..+++.|+|+|-++
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4688888887 57998764 4689999999999999999884
No 485
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=82.21 E-value=14 Score=35.51 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhc-CCcEEEE-eecCHHHHHHHHHcCCcEEEEc
Q 019244 186 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 186 ~~~~~i~~i~~~~-~~PvivK-~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..|+.+.++++.. ++||+.= ++.+.+++....+ |+|+|-++
T Consensus 181 ~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 181 LRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred hhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 4788899999887 7998654 4689999998886 99999884
No 486
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.09 E-value=3.7 Score=35.55 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEc
Q 019244 185 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 185 ~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
...++.++++++..++||++-+..+.+++..+.++|+|++.++
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 3467889999887889998887778999999999999999885
No 487
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=81.63 E-value=13 Score=35.07 Aligned_cols=92 Identities=25% Similarity=0.258 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCcEEEEee--cCHHH----HHHHHHcCCcEEEEccCCCCCCCCc--hhhHHHHHHHHHHccCCCcEEE
Q 019244 188 WKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 259 (344)
Q Consensus 188 ~~~i~~i~~~~~~PvivK~v--~~~~~----a~~~~~~G~d~I~v~~~gG~~~~~g--~~~~~~l~~i~~~~~~~~~via 259 (344)
.+.++++.+ ++.||.+|-- .++++ ++.+...|-+-|.+.-.|-+ +... ...+..++.+++ . ..|||.
T Consensus 120 tdLL~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t-Fgy~~lv~D~r~ip~mk~-~--~lPVI~ 194 (290)
T PLN03033 120 TDLLVAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
T ss_pred HHHHHHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 345666654 6899999976 56766 67788899999988765532 2111 124455665543 2 689998
Q ss_pred e--------------------cCCCCHHH--HHHHHHcCCCEEEEch
Q 019244 260 D--------------------GGVRRGTD--VFKALALGASGIFIGR 284 (344)
Q Consensus 260 ~--------------------GGIr~g~d--v~kalalGAd~V~ig~ 284 (344)
| ||-|.--- +..|+++|||.+++-.
T Consensus 195 DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 195 DITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred eCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5 34443222 2367789999999876
No 488
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=81.51 E-value=30 Score=30.58 Aligned_cols=84 Identities=25% Similarity=0.270 Sum_probs=55.5
Q ss_pred HHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEccC--------CCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCC
Q 019244 194 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--------GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 265 (344)
Q Consensus 194 i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~~--------gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~ 265 (344)
+.+..+.-||. .+.++|+|+.+.++|+-++...-. ||- .-.+....+.+|.+++ .+||++---|..
T Consensus 9 la~mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGH 82 (208)
T PF01680_consen 9 LAQMLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGH 82 (208)
T ss_dssp HHHTTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-
T ss_pred HHHHhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccce
Confidence 33444555554 368999999999999999987532 331 1135667888999888 899999998888
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 019244 266 GTDVFKALALGASGIFIG 283 (344)
Q Consensus 266 g~dv~kalalGAd~V~ig 283 (344)
-.++--.=++|.|.+==.
T Consensus 83 fvEAqiLealgVD~IDES 100 (208)
T PF01680_consen 83 FVEAQILEALGVDYIDES 100 (208)
T ss_dssp HHHHHHHHHTT-SEEEEE
T ss_pred eehhhhHHHhCCceeccc
Confidence 777765567999987433
No 489
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=81.14 E-value=4.8 Score=35.84 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCcEE-EEeecCHHHHHHHHHcCCcEEEEc
Q 019244 189 KDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVS 227 (344)
Q Consensus 189 ~~i~~i~~~~~~Pvi-vK~v~~~~~a~~~~~~G~d~I~v~ 227 (344)
..++|+|++++.+.| +-+..+++.+.++.++||+.|+..
T Consensus 158 ~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 158 PKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred HHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEec
Confidence 479999998866655 777789999999999999999764
No 490
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=81.09 E-value=17 Score=34.69 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCcEEEEeec---C-HHHHHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v~---~-~~~a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.|+++++.++.|+.+-... . .+..+.+.+.|++.|.++ +| .|. ..+.++++. .+.|++ -+.
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~--~g------~p~-~~i~~lk~~---g~~v~~--~v~ 117 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG--AG------NPG-KYIPRLKEN---GVKVIP--VVA 117 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc--CC------CcH-HHHHHHHHc---CCEEEE--EcC
Confidence 46888998888898877653 2 234566889999999773 23 222 344444432 466665 567
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 019244 265 RGTDVFKALALGASGIFI 282 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~i 282 (344)
|..++.++..+|||.+.+
T Consensus 118 s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 118 SVALAKRMEKAGADAVIA 135 (307)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 889999999999999987
No 491
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=80.94 E-value=13 Score=33.12 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCC---CchhhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~---~g~~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++.+++. ++.+.+-.. ........+....+|+|.++..--+... .....+..+..+.+.. .+.||+. ||.
T Consensus 137 ~~i~~l~~~-G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~-gVe 212 (241)
T smart00052 137 ATLQRLREL-GVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAE-GVE 212 (241)
T ss_pred HHHHHHHHC-CCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEe-cCC
Confidence 456777664 888887765 3456667888899999999742111111 1122344444444443 6888886 599
Q ss_pred CHHHHHHHHHcCCCEEE
Q 019244 265 RGTDVFKALALGASGIF 281 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ 281 (344)
+..+...+..+|.+.++
T Consensus 213 ~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 213 TPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred CHHHHHHHHHcCCCEEe
Confidence 99999999999999875
No 492
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=80.86 E-value=19 Score=35.66 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHHHHHHh-cCCcEEEEe--ecCHHH-HHHHHHcCCcEEEEccCCCCCCCCchhhHH-HHHHHHHHccCCCcEEE-ec
Q 019244 188 WKDVKWLQTI-TKLPILVKG--VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFL-DG 261 (344)
Q Consensus 188 ~~~i~~i~~~-~~~PvivK~--v~~~~~-a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~-~l~~i~~~~~~~~~via-~G 261 (344)
.+.+++|++. .+.|+.+=. ...+.. ++.+.++|+|.+++...++ ..++. ++..+++ . .+.+.. .-
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~akk-~--GikvgVD~l 284 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQK-T--GIYSILDML 284 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEEc
Confidence 3568999987 467776643 333334 7789999999999964332 22333 3333332 2 355555 55
Q ss_pred CCCCHHHHHHHHHcCCCEEEEch
Q 019244 262 GVRRGTDVFKALALGASGIFIGR 284 (344)
Q Consensus 262 GIr~g~dv~kalalGAd~V~ig~ 284 (344)
+..+..+.++.+..|.|.|.+.+
T Consensus 285 np~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 285 NVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred CCCCHHHHHHHhhCCCCEEEEcc
Confidence 67788889998899999999886
No 493
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.84 E-value=3 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~ 228 (344)
.++.++++++.+++|+++-+- .+++++..+.+.|+|+|.++.
T Consensus 144 ~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 144 TFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEch
Confidence 467899999888999988765 456999999999999999964
No 494
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=80.79 E-value=3 Score=37.32 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchHHHHH
Q 019244 239 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 289 (344)
Q Consensus 239 ~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalGAd~V~ig~~~l~~ 289 (344)
+..+.+..+.... .-||+..|||+-.+|..-+..+|.++|.+|+++..+
T Consensus 168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 4556666665543 678999999999999988888999999999998764
No 495
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=80.76 E-value=2.5 Score=38.64 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=32.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-ecCHHHHHHHHHcCCcEEEEcc
Q 019244 187 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 228 (344)
Q Consensus 187 ~~~~i~~i~~~~~~PvivK~-v~~~~~a~~~~~~G~d~I~v~~ 228 (344)
..+.++.+.+.+ |+++.+ +.++|.|+++.++|||.|++.|
T Consensus 181 ~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~ 221 (240)
T COG1646 181 PVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGT 221 (240)
T ss_pred CHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 345676666654 888877 5899999999999999999965
No 496
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=80.59 E-value=22 Score=33.74 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHHHHHcCCcEEEEccCCCCCCCCchhhHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchHHHHH
Q 019244 213 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 289 (344)
Q Consensus 213 a~~~~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~~~via~GGIr~g~dv~kalalG-Ad~V~ig~~~l~~ 289 (344)
++...++|||.|.+- |+ ..+.+.+..+.+.+...+|++...|-.-.......-.+| ...|..|...+++
T Consensus 172 a~aY~eAGAD~ifv~--~~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 172 GQAYEEAGADAILIH--SR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHHHHHcCCCEEEec--CC------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH
Confidence 567889999999883 21 235566777777765567886544321112333455688 7888888777664
No 497
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=80.48 E-value=20 Score=35.36 Aligned_cols=89 Identities=26% Similarity=0.272 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc-CCCC---C----------CCCchh-------hHH
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-HGAR---Q----------LDYVPA-------TIM 242 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~-~gG~---~----------~~~g~~-------~~~ 242 (344)
...+.++|+++.+.+ .+-|+++.++|.|+|.+.. |.|. | ..+|-+ ..+
T Consensus 138 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~e 206 (382)
T cd02931 138 RELTTEEVETFVGKF-----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIE 206 (382)
T ss_pred CcCCHHHHHHHHHHH-----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHH
Confidence 345778888888765 3678999999999999975 4132 1 123322 345
Q ss_pred HHHHHHHHccCCCcEEE--e--------------------cCCCCHH---HHHHHHH-cCCCEEEEch
Q 019244 243 ALEEVVKATQGRIPVFL--D--------------------GGVRRGT---DVFKALA-LGASGIFIGR 284 (344)
Q Consensus 243 ~l~~i~~~~~~~~~via--~--------------------GGIr~g~---dv~kala-lGAd~V~ig~ 284 (344)
.+..|++.++.+.+|.. + ||. +.+ ++++.+. .|+|.+-+..
T Consensus 207 ii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 207 IVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred HHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 67777777655555544 1 232 234 4556664 7999998864
No 498
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=80.16 E-value=11 Score=35.23 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCC--CCCCchhhHHHHHH----HHHHccCCCcEEEecCCCCHH--HHHHHHHcCCCEEE
Q 019244 210 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEE----VVKATQGRIPVFLDGGVRRGT--DVFKALALGASGIF 281 (344)
Q Consensus 210 ~~~a~~~~~~G~d~I~v~~~gG~--~~~~g~~~~~~l~~----i~~~~~~~~~via~GGIr~g~--dv~kalalGAd~V~ 281 (344)
.++++.+.+.|+|+|.+.|.+.. ....++.++.++.. +++.+ ++|+=. -=+++.. -+.-|.+.||++|-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~--~~p~GV-nvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV--SVPVGV-NVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC--CCCEEe-eeecCCCHHHHHHHHHhCCCEEE
Confidence 47899999999999999997654 22345555554443 33433 344311 1123222 23345668999998
Q ss_pred Ec
Q 019244 282 IG 283 (344)
Q Consensus 282 ig 283 (344)
+.
T Consensus 109 v~ 110 (254)
T PF03437_consen 109 VN 110 (254)
T ss_pred ec
Confidence 66
No 499
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=80.09 E-value=5.8 Score=35.24 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCcEEEEee-cCHHHHHHHHHcCCcEEEEccCCCCCCCCch---hhHHHHHHHHHHccCCCcEEEecCCC
Q 019244 189 KDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVP---ATIMALEEVVKATQGRIPVFLDGGVR 264 (344)
Q Consensus 189 ~~i~~i~~~~~~PvivK~v-~~~~~a~~~~~~G~d~I~v~~~gG~~~~~g~---~~~~~l~~i~~~~~~~~~via~GGIr 264 (344)
+.++.+++ .++.+.+... ........+....+|+|.++..-=+... .. ..+..+..+.+.. .+.||++| |.
T Consensus 138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (236)
T PF00563_consen 138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE 212 (236)
T ss_dssp HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence 45777777 5889998877 3345666788999999999753211122 22 2333444444433 68888865 99
Q ss_pred CHHHHHHHHHcCCCEEE
Q 019244 265 RGTDVFKALALGASGIF 281 (344)
Q Consensus 265 ~g~dv~kalalGAd~V~ 281 (344)
+..+.-.+..+|++.++
T Consensus 213 ~~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 213 SEEQLELLKELGVDYIQ 229 (236)
T ss_dssp SHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999875
No 500
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.85 E-value=20 Score=34.91 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeecCHHHHHHHHHcCCcEEEEcc-CCC------------CCCCCchh-------hHHH
Q 019244 184 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-HGA------------RQLDYVPA-------TIMA 243 (344)
Q Consensus 184 ~~~~~~~i~~i~~~~~~PvivK~v~~~~~a~~~~~~G~d~I~v~~-~gG------------~~~~~g~~-------~~~~ 243 (344)
...+.++|+++.+.+ .+-|+++.++|+|+|.+.. ||. |...+|-+ ..+.
T Consensus 132 ~~mt~~eI~~ii~~f-----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~ei 200 (353)
T cd04735 132 RELTHEEIEDIIDAF-----------GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAV 200 (353)
T ss_pred ccCCHHHHHHHHHHH-----------HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHH
Confidence 345677888888765 3678899999999999954 332 11123322 3456
Q ss_pred HHHHHHHcc----CCCcEEE--------ecCCC--CHHHHHHHHH-cCCCEEEEchHH
Q 019244 244 LEEVVKATQ----GRIPVFL--------DGGVR--RGTDVFKALA-LGASGIFIGRPV 286 (344)
Q Consensus 244 l~~i~~~~~----~~~~via--------~GGIr--~g~dv~kala-lGAd~V~ig~~~ 286 (344)
+..|+++++ .+++|.. .||+. ...++++.|. +|+|.+-++...
T Consensus 201 i~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 201 VKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred HHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 677777765 3555443 45554 2234556664 799999987543
Done!