Query 019247
Match_columns 344
No_of_seqs 181 out of 1793
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 3.8E-39 8.2E-44 287.1 31.2 299 17-315 7-313 (334)
2 PLN00411 nodulin MtN21 family 100.0 9.4E-33 2E-37 251.5 31.8 278 33-312 23-333 (358)
3 PRK11272 putative DMT superfam 100.0 6.3E-31 1.4E-35 235.7 31.7 281 19-310 3-288 (292)
4 PRK11689 aromatic amino acid e 100.0 1E-30 2.2E-35 234.5 30.1 274 28-310 8-290 (295)
5 PRK11453 O-acetylserine/cystei 100.0 8.3E-30 1.8E-34 229.2 32.9 272 29-310 9-290 (299)
6 KOG2766 Predicted membrane pro 100.0 1.8E-32 4E-37 226.0 5.9 301 18-322 13-314 (336)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 4.6E-29 1E-33 220.4 28.0 256 36-302 1-259 (260)
8 PRK10532 threonine and homoser 100.0 5.8E-28 1.3E-32 216.5 31.5 270 27-311 15-285 (293)
9 TIGR00817 tpt Tpt phosphate/ph 100.0 1.2E-28 2.6E-33 222.3 26.7 265 43-314 21-300 (302)
10 PRK15430 putative chlorampheni 100.0 7.3E-27 1.6E-31 209.7 29.8 272 20-309 5-287 (296)
11 PTZ00343 triose or hexose phos 100.0 6.6E-26 1.4E-30 207.4 30.6 256 44-308 69-349 (350)
12 TIGR03340 phn_DUF6 phosphonate 99.9 4.5E-25 9.7E-30 196.8 23.0 265 27-304 5-280 (281)
13 COG0697 RhaT Permeases of the 99.9 3.2E-22 6.9E-27 179.3 32.4 268 32-308 15-288 (292)
14 PF08449 UAA: UAA transporter 99.9 2.2E-21 4.8E-26 174.7 30.7 273 40-312 17-302 (303)
15 TIGR00688 rarD rarD protein. T 99.9 7E-22 1.5E-26 174.0 26.6 237 28-282 6-255 (256)
16 COG5006 rhtA Threonine/homoser 99.9 9.5E-21 2.1E-25 157.0 27.4 247 52-312 39-287 (292)
17 KOG4510 Permease of the drug/m 99.9 1E-23 2.2E-28 175.6 4.7 281 23-310 38-328 (346)
18 TIGR00776 RhaT RhaT L-rhamnose 99.9 4.2E-19 9.2E-24 158.5 28.3 267 28-307 5-288 (290)
19 COG2962 RarD Predicted permeas 99.8 7.1E-18 1.5E-22 143.8 26.0 272 22-309 6-285 (293)
20 KOG1581 UDP-galactose transpor 99.8 1.3E-17 2.9E-22 142.2 25.5 265 50-315 48-321 (327)
21 KOG2765 Predicted membrane pro 99.8 1.6E-18 3.4E-23 151.6 19.2 226 86-312 162-395 (416)
22 KOG1441 Glucose-6-phosphate/ph 99.8 6.6E-19 1.4E-23 155.5 13.1 258 49-314 44-314 (316)
23 KOG2234 Predicted UDP-galactos 99.8 6.7E-15 1.5E-19 129.2 31.8 256 52-311 46-326 (345)
24 KOG3912 Predicted integral mem 99.8 3.6E-16 7.8E-21 131.6 21.3 259 49-307 35-334 (372)
25 PF04142 Nuc_sug_transp: Nucle 99.7 1.2E-15 2.6E-20 132.0 22.5 216 79-298 13-244 (244)
26 KOG1580 UDP-galactose transpor 99.7 5.5E-16 1.2E-20 127.3 15.4 258 53-311 53-317 (337)
27 KOG1443 Predicted integral mem 99.7 2.1E-14 4.6E-19 122.6 23.1 252 49-307 41-315 (349)
28 KOG1582 UDP-galactose transpor 99.6 2.4E-14 5.3E-19 120.1 15.8 288 19-312 38-337 (367)
29 KOG1444 Nucleotide-sugar trans 99.6 1.9E-12 4.2E-17 112.2 23.5 268 40-314 28-307 (314)
30 COG2510 Predicted membrane pro 99.5 5.7E-13 1.2E-17 99.4 12.3 125 29-155 8-139 (140)
31 KOG4314 Predicted carbohydrate 99.5 8.7E-13 1.9E-17 105.8 13.6 218 89-311 59-280 (290)
32 COG2510 Predicted membrane pro 99.5 3.5E-13 7.7E-18 100.5 10.4 135 171-307 4-139 (140)
33 PF00892 EamA: EamA-like trans 99.4 3.6E-12 7.8E-17 99.2 11.4 125 180-306 1-125 (126)
34 KOG1583 UDP-N-acetylglucosamin 99.4 1.8E-12 3.8E-17 109.4 9.3 267 44-310 24-317 (330)
35 PF06800 Sugar_transport: Suga 99.4 2.3E-10 4.9E-15 98.9 21.7 245 52-304 11-268 (269)
36 COG5070 VRG4 Nucleotide-sugar 99.3 8.9E-11 1.9E-15 96.2 14.8 261 49-311 33-300 (309)
37 KOG1442 GDP-fucose transporter 99.3 5.6E-13 1.2E-17 112.2 1.9 258 50-312 58-332 (347)
38 PF00892 EamA: EamA-like trans 99.2 1.9E-11 4.2E-16 95.0 7.5 118 35-154 2-125 (126)
39 PF13536 EmrE: Multidrug resis 99.2 5E-11 1.1E-15 91.1 8.9 100 58-158 2-109 (113)
40 PF03151 TPT: Triose-phosphate 99.2 4.8E-10 1E-14 90.6 14.9 137 171-307 1-153 (153)
41 PF05653 Mg_trans_NIPA: Magnes 99.1 2E-09 4.4E-14 96.0 16.0 212 95-310 62-295 (300)
42 TIGR00803 nst UDP-galactose tr 99.1 3.1E-09 6.8E-14 91.4 16.3 189 112-305 7-222 (222)
43 PRK15430 putative chlorampheni 99.1 8.8E-09 1.9E-13 92.6 16.5 137 167-306 5-144 (296)
44 TIGR03340 phn_DUF6 phosphonate 99.1 8.7E-09 1.9E-13 92.0 16.2 131 172-307 3-135 (281)
45 TIGR00688 rarD rarD protein. T 99.0 1.8E-08 3.9E-13 88.7 16.5 136 170-307 2-142 (256)
46 TIGR00950 2A78 Carboxylate/Ami 99.0 1.1E-08 2.3E-13 90.3 15.1 130 22-151 127-260 (260)
47 PRK13499 rhamnose-proton sympo 98.9 9.1E-07 2E-11 79.8 24.2 227 80-309 70-343 (345)
48 PRK02971 4-amino-4-deoxy-L-ara 98.9 1.4E-07 3E-12 73.2 14.8 122 170-310 2-125 (129)
49 KOG2922 Uncharacterized conser 98.9 5.8E-08 1.3E-12 84.5 13.0 219 85-310 65-309 (335)
50 PLN00411 nodulin MtN21 family 98.8 3.8E-07 8.3E-12 83.7 16.2 136 170-308 13-157 (358)
51 PRK10532 threonine and homoser 98.6 7.9E-07 1.7E-11 79.9 14.1 132 23-157 148-283 (293)
52 PRK11272 putative DMT superfam 98.6 2.3E-06 4.9E-11 76.9 16.9 132 172-308 10-142 (292)
53 PF13536 EmrE: Multidrug resis 98.6 1.1E-06 2.4E-11 67.0 12.3 78 231-310 32-109 (113)
54 COG2962 RarD Predicted permeas 98.6 1.3E-06 2.9E-11 75.3 13.5 141 168-309 5-146 (293)
55 PRK11689 aromatic amino acid e 98.6 2E-06 4.4E-11 77.3 15.0 131 170-308 4-138 (295)
56 PRK11453 O-acetylserine/cystei 98.5 5.8E-06 1.2E-10 74.5 17.0 125 173-307 7-132 (299)
57 PTZ00343 triose or hexose phos 98.5 7.5E-06 1.6E-10 75.3 17.7 138 169-307 48-186 (350)
58 PRK15051 4-amino-4-deoxy-L-ara 98.5 8.7E-06 1.9E-10 61.6 14.0 65 243-307 45-109 (111)
59 COG4975 GlcU Putative glucose 98.4 3.3E-08 7.1E-13 82.6 -0.7 268 26-307 5-285 (288)
60 TIGR00817 tpt Tpt phosphate/ph 98.4 1.8E-05 4E-10 71.4 16.2 122 182-306 14-136 (302)
61 PRK15051 4-amino-4-deoxy-L-ara 98.4 4E-06 8.6E-11 63.5 10.0 64 92-155 45-109 (111)
62 PF03151 TPT: Triose-phosphate 98.4 1.7E-05 3.8E-10 63.8 14.2 129 25-153 2-151 (153)
63 TIGR00776 RhaT RhaT L-rhamnose 98.3 8.8E-06 1.9E-10 72.9 10.9 128 22-155 151-288 (290)
64 COG0697 RhaT Permeases of the 98.2 0.00012 2.5E-09 65.3 17.4 141 168-311 5-147 (292)
65 PRK10452 multidrug efflux syst 98.0 8E-05 1.7E-09 56.8 10.4 68 243-310 38-106 (120)
66 PF06027 DUF914: Eukaryotic pr 98.0 0.00036 7.8E-09 63.1 15.8 139 169-310 12-154 (334)
67 PRK02971 4-amino-4-deoxy-L-ara 97.9 4.2E-05 9E-10 59.4 6.8 72 86-157 50-124 (129)
68 PF08449 UAA: UAA transporter 97.8 0.00096 2.1E-08 60.2 16.0 129 181-314 11-143 (303)
69 PRK09541 emrE multidrug efflux 97.8 0.00042 9.2E-09 52.1 10.4 67 243-309 38-105 (110)
70 PF04657 DUF606: Protein of un 97.7 0.003 6.5E-08 49.7 14.5 131 171-304 2-138 (138)
71 PF05653 Mg_trans_NIPA: Magnes 97.7 0.00034 7.3E-09 62.7 10.2 122 166-309 3-124 (300)
72 COG5006 rhtA Threonine/homoser 97.7 0.00094 2E-08 56.7 12.1 104 52-155 175-282 (292)
73 PF06800 Sugar_transport: Suga 97.6 0.00075 1.6E-08 58.8 11.0 126 20-151 135-267 (269)
74 PRK10650 multidrug efflux syst 97.6 0.0012 2.5E-08 49.5 10.4 72 82-153 34-106 (109)
75 COG2076 EmrE Membrane transpor 97.6 0.00089 1.9E-08 49.4 9.0 62 94-155 41-103 (106)
76 PRK10650 multidrug efflux syst 97.5 0.0049 1.1E-07 46.2 13.0 64 243-306 43-107 (109)
77 COG3238 Uncharacterized protei 97.5 0.0074 1.6E-07 47.6 14.3 138 169-308 4-147 (150)
78 COG2076 EmrE Membrane transpor 97.5 0.0013 2.8E-08 48.6 9.3 67 243-309 38-105 (106)
79 PRK11431 multidrug efflux syst 97.5 0.0018 3.9E-08 48.2 10.0 66 243-308 37-103 (105)
80 PRK10452 multidrug efflux syst 97.4 0.002 4.2E-08 49.2 9.5 63 95-157 42-105 (120)
81 PRK11431 multidrug efflux syst 97.4 0.0026 5.7E-08 47.4 9.9 61 95-155 41-102 (105)
82 PRK13499 rhamnose-proton sympo 97.4 0.0053 1.1E-07 55.7 13.5 139 167-310 4-156 (345)
83 PRK09541 emrE multidrug efflux 97.3 0.003 6.5E-08 47.5 9.3 59 97-155 44-103 (110)
84 KOG4510 Permease of the drug/m 97.3 9.1E-05 2E-09 63.1 0.9 137 167-309 35-171 (346)
85 PF04142 Nuc_sug_transp: Nucle 97.2 0.0033 7.1E-08 54.7 10.3 68 245-312 27-94 (244)
86 PF10639 UPF0546: Uncharacteri 97.2 0.00089 1.9E-08 50.2 5.6 70 84-153 42-112 (113)
87 PF04657 DUF606: Protein of un 97.1 0.019 4E-07 45.2 12.4 114 38-152 16-138 (138)
88 PF00893 Multi_Drug_Res: Small 96.8 0.02 4.3E-07 41.8 9.8 55 244-298 38-93 (93)
89 PF00893 Multi_Drug_Res: Small 96.7 0.0053 1.1E-07 44.8 5.6 51 96-146 42-93 (93)
90 PF07857 DUF1632: CEO family ( 96.6 0.015 3.2E-07 50.5 9.2 132 171-312 1-139 (254)
91 PF06379 RhaT: L-rhamnose-prot 96.5 0.62 1.4E-05 42.0 22.8 253 53-307 33-340 (344)
92 TIGR00803 nst UDP-galactose tr 96.3 0.058 1.3E-06 46.2 11.0 68 85-152 154-221 (222)
93 KOG1441 Glucose-6-phosphate/ph 96.1 0.018 3.9E-07 51.7 6.6 135 21-155 161-307 (316)
94 KOG2234 Predicted UDP-galactos 95.8 0.82 1.8E-05 41.3 15.6 141 170-310 15-167 (345)
95 PF10639 UPF0546: Uncharacteri 95.8 0.046 1E-06 41.1 6.7 109 177-305 3-112 (113)
96 KOG1580 UDP-galactose transpor 95.7 0.016 3.4E-07 48.9 4.4 77 79-155 237-313 (337)
97 KOG2765 Predicted membrane pro 95.5 0.29 6.3E-06 44.4 11.7 141 17-158 241-393 (416)
98 PF06379 RhaT: L-rhamnose-prot 95.4 0.52 1.1E-05 42.5 13.1 144 166-312 3-158 (344)
99 COG3238 Uncharacterized protei 94.9 0.59 1.3E-05 37.0 10.8 119 34-153 16-144 (150)
100 COG4975 GlcU Putative glucose 94.7 0.013 2.8E-07 49.8 0.9 132 171-310 3-139 (288)
101 KOG2922 Uncharacterized conser 94.6 0.019 4E-07 50.8 1.8 125 164-310 15-139 (335)
102 KOG1581 UDP-galactose transpor 94.5 0.2 4.4E-06 44.1 7.9 116 37-152 186-310 (327)
103 KOG4314 Predicted carbohydrate 92.6 0.13 2.8E-06 42.3 3.2 61 249-309 67-127 (290)
104 KOG4831 Unnamed protein [Funct 92.2 0.14 3.1E-06 37.3 2.8 71 84-154 53-124 (125)
105 PF07168 Ureide_permease: Urei 89.7 0.064 1.4E-06 47.1 -1.1 132 176-309 2-148 (336)
106 KOG3912 Predicted integral mem 89.3 1.9 4.1E-05 37.8 7.4 66 243-308 94-159 (372)
107 KOG1444 Nucleotide-sugar trans 87.8 20 0.00043 32.2 12.9 125 181-309 23-151 (314)
108 PRK02237 hypothetical protein; 87.2 1.2 2.7E-05 32.8 4.3 41 270-310 68-108 (109)
109 PF02694 UPF0060: Uncharacteri 86.1 1.2 2.7E-05 32.7 3.8 41 270-310 66-106 (107)
110 PRK02237 hypothetical protein; 86.1 11 0.00024 27.9 8.7 44 113-156 63-106 (109)
111 PF07857 DUF1632: CEO family ( 86.0 18 0.00039 31.6 11.6 126 28-157 4-136 (254)
112 PF08507 COPI_assoc: COPI asso 85.9 15 0.00032 28.7 11.6 18 290-307 88-105 (136)
113 KOG1442 GDP-fucose transporter 84.6 0.83 1.8E-05 39.8 2.7 135 20-154 182-326 (347)
114 PF02694 UPF0060: Uncharacteri 84.3 9.4 0.0002 28.2 7.6 45 113-157 61-105 (107)
115 PF04342 DUF486: Protein of un 79.9 6.7 0.00015 28.9 5.5 32 274-305 75-106 (108)
116 KOG1582 UDP-galactose transpor 78.9 12 0.00027 32.7 7.7 106 53-158 220-335 (367)
117 KOG1443 Predicted integral mem 78.3 34 0.00073 30.7 10.3 52 102-153 262-313 (349)
118 PF04342 DUF486: Protein of un 73.4 35 0.00075 25.3 9.4 52 102-153 54-106 (108)
119 COG1742 Uncharacterized conser 68.9 44 0.00095 24.6 9.5 45 113-157 62-106 (109)
120 COG1742 Uncharacterized conser 68.1 46 0.001 24.5 7.4 41 270-310 67-107 (109)
121 COG3169 Uncharacterized protei 68.1 44 0.00095 24.3 8.6 33 274-306 82-114 (116)
122 PF06570 DUF1129: Protein of u 68.0 73 0.0016 26.8 11.7 33 78-110 141-173 (206)
123 PRK06638 NADH:ubiquinone oxido 67.1 75 0.0016 26.6 10.4 33 276-308 133-167 (198)
124 PF05977 MFS_3: Transmembrane 66.4 1.4E+02 0.003 29.3 14.9 17 266-282 351-367 (524)
125 PF05297 Herpes_LMP1: Herpesvi 65.3 2.1 4.5E-05 37.4 0.0 50 101-150 41-92 (381)
126 TIGR00892 2A0113 monocarboxyla 64.7 34 0.00073 32.6 8.2 12 331-342 443-454 (455)
127 PF05684 DUF819: Protein of un 61.9 1.4E+02 0.003 27.9 14.2 37 179-215 64-100 (378)
128 PF15345 TMEM51: Transmembrane 61.3 5.9 0.00013 33.6 2.0 25 292-316 66-90 (233)
129 COG5070 VRG4 Nucleotide-sugar 60.1 44 0.00094 28.5 6.8 101 53-153 185-294 (309)
130 TIGR02865 spore_II_E stage II 58.5 2.3E+02 0.005 29.3 16.0 44 110-153 11-54 (764)
131 KOG2766 Predicted membrane pro 57.7 2.3 5E-05 36.7 -1.0 65 245-309 88-152 (336)
132 COG2271 UhpC Sugar phosphate p 56.1 1.8E+02 0.0039 27.7 10.8 40 271-311 169-209 (448)
133 TIGR02840 spore_YtaF putative 54.1 49 0.0011 27.9 6.4 49 258-306 30-80 (206)
134 PF12292 DUF3624: Protein of u 53.6 73 0.0016 22.1 5.9 66 5-73 4-69 (77)
135 PF01102 Glycophorin_A: Glycop 52.8 9.3 0.0002 29.2 1.7 20 293-312 75-94 (122)
136 PRK13108 prolipoprotein diacyl 48.9 27 0.00059 33.4 4.5 24 287-310 254-277 (460)
137 KOG1623 Multitransmembrane pro 48.8 1.8E+02 0.0039 25.3 9.3 29 277-306 176-205 (243)
138 KOG1583 UDP-N-acetylglucosamin 48.5 19 0.00042 31.7 3.1 45 270-314 100-144 (330)
139 PF10225 DUF2215: Uncharacteri 47.3 1E+02 0.0022 27.0 7.4 41 144-185 15-55 (249)
140 COG3086 RseC Positive regulato 45.5 30 0.00066 27.1 3.5 26 257-282 70-95 (150)
141 PRK11469 hypothetical protein; 45.3 64 0.0014 26.8 5.7 46 261-306 40-86 (188)
142 PF15048 OSTbeta: Organic solu 44.2 33 0.00071 26.2 3.4 29 280-308 25-57 (125)
143 PLN00028 nitrate transmembrane 43.0 2.2E+02 0.0048 27.2 10.0 16 291-306 416-431 (476)
144 KOG4831 Unnamed protein [Funct 41.9 38 0.00082 25.0 3.3 55 252-306 69-124 (125)
145 PRK09412 anaerobic C4-dicarbox 41.6 3.2E+02 0.0069 26.1 10.5 14 123-136 7-20 (433)
146 PHA03049 IMV membrane protein; 40.8 38 0.00082 22.6 2.8 23 291-313 6-28 (68)
147 PF09656 PGPGW: Putative trans 39.7 75 0.0016 20.3 4.0 45 138-194 4-48 (53)
148 PF05297 Herpes_LMP1: Herpesvi 39.3 10 0.00022 33.3 0.1 21 249-269 122-142 (381)
149 PRK11380 hypothetical protein; 38.3 1.1E+02 0.0023 28.0 6.2 25 82-106 116-140 (353)
150 PRK11715 inner membrane protei 38.3 2.4E+02 0.0052 26.9 8.9 20 77-96 325-344 (436)
151 KOG2533 Permease of the major 37.8 2.1E+02 0.0046 27.8 8.8 11 142-152 213-223 (495)
152 PF02592 DUF165: Uncharacteriz 37.7 2E+02 0.0043 22.6 8.6 35 4-38 13-47 (145)
153 PF14851 FAM176: FAM176 family 37.7 50 0.0011 26.4 3.7 11 258-268 16-26 (153)
154 KOG2322 N-methyl-D-aspartate r 37.4 75 0.0016 27.3 4.9 17 79-95 107-123 (237)
155 KOG1479 Nucleoside transporter 36.5 3.7E+02 0.0081 25.4 12.3 20 290-309 185-204 (406)
156 COG4657 RnfA Predicted NADH:ub 36.3 1.4E+02 0.003 24.1 5.9 64 125-195 87-157 (193)
157 PF15102 TMEM154: TMEM154 prot 36.2 43 0.00092 26.4 3.0 22 292-313 66-87 (146)
158 PF06123 CreD: Inner membrane 35.5 3.3E+02 0.0072 26.0 9.4 123 61-192 303-426 (430)
159 PF07698 7TM-7TMR_HD: 7TM rece 35.5 2.5E+02 0.0054 23.0 17.3 22 116-137 64-86 (194)
160 PF04246 RseC_MucC: Positive r 34.9 45 0.00097 25.9 3.1 23 260-282 66-88 (135)
161 COG0670 Integral membrane prot 34.2 3.1E+02 0.0066 23.7 19.5 27 169-195 170-196 (233)
162 PF07444 Ycf66_N: Ycf66 protei 34.2 38 0.00082 24.0 2.2 25 286-310 4-28 (84)
163 PF05961 Chordopox_A13L: Chord 33.5 60 0.0013 21.8 2.9 22 291-312 6-27 (68)
164 PF14851 FAM176: FAM176 family 33.3 2.5E+02 0.0055 22.4 7.8 8 285-292 20-27 (153)
165 TIGR00893 2A0114 d-galactonate 30.3 4E+02 0.0086 23.8 12.3 8 186-193 50-57 (399)
166 PF09534 Trp_oprn_chp: Tryptop 30.3 62 0.0013 26.9 3.3 20 290-309 125-145 (189)
167 TIGR02908 CoxD_Bacillus cytoch 30.1 2.4E+02 0.0052 21.2 8.7 35 9-43 12-46 (110)
168 PRK12437 prolipoprotein diacyl 29.6 50 0.0011 29.2 2.8 23 287-309 235-257 (269)
169 COG1971 Predicted membrane pro 29.4 1.3E+02 0.0029 24.9 5.0 46 261-306 40-86 (190)
170 PF15471 TMEM171: Transmembran 29.2 61 0.0013 28.3 3.1 21 289-309 161-181 (319)
171 PF13038 DUF3899: Domain of un 29.2 21 0.00045 25.7 0.3 20 288-307 3-22 (92)
172 COG4858 Uncharacterized membra 29.1 1.9E+02 0.004 24.0 5.6 77 1-79 141-217 (226)
173 PF10754 DUF2569: Protein of u 29.0 1E+02 0.0022 24.4 4.3 30 165-194 116-145 (149)
174 COG2851 CitM H+/citrate sympor 28.8 25 0.00055 32.4 0.8 20 123-142 10-29 (433)
175 PF15108 TMEM37: Voltage-depen 28.6 1.1E+02 0.0023 24.5 4.1 71 143-213 95-168 (184)
176 PRK11212 hypothetical protein; 28.4 3E+02 0.0065 23.3 7.1 29 3-31 54-82 (210)
177 PF15176 LRR19-TM: Leucine-ric 28.4 1.5E+02 0.0034 21.7 4.6 13 288-300 16-28 (102)
178 PF03348 Serinc: Serine incorp 28.4 96 0.0021 29.5 4.6 27 284-310 280-306 (429)
179 PRK11715 inner membrane protei 27.7 5.5E+02 0.012 24.6 13.8 123 170-306 306-428 (436)
180 PF12606 RELT: Tumour necrosis 27.6 92 0.002 19.7 2.9 13 297-309 13-25 (50)
181 PRK09776 putative diguanylate 26.6 8.2E+02 0.018 26.2 17.5 23 171-193 71-93 (1092)
182 PF11023 DUF2614: Protein of u 26.2 1.5E+02 0.0032 22.3 4.2 24 132-155 5-28 (114)
183 KOG0569 Permease of the major 25.1 6.4E+02 0.014 24.5 11.0 23 270-292 412-436 (485)
184 TIGR00939 2a57 Equilibrative N 25.0 6.1E+02 0.013 24.2 12.0 16 291-306 178-193 (437)
185 COG3366 Uncharacterized protei 24.9 3.1E+02 0.0067 24.8 6.8 42 266-307 104-145 (311)
186 PRK10862 SoxR reducing system 23.5 1E+02 0.0022 24.7 3.3 20 262-281 75-94 (154)
187 PRK15071 lipopolysaccharide AB 23.3 3.2E+02 0.0069 25.0 7.1 36 24-59 304-339 (356)
188 COG3086 RseC Positive regulato 22.6 92 0.002 24.6 2.8 28 103-130 68-95 (150)
189 PF06570 DUF1129: Protein of u 22.6 2.6E+02 0.0057 23.4 5.9 15 82-96 179-193 (206)
190 TIGR00697 conserved hypothetic 22.1 4.8E+02 0.01 21.9 8.3 35 4-38 45-79 (202)
191 PF12811 BaxI_1: Bax inhibitor 22.0 5.6E+02 0.012 22.7 17.4 45 108-152 144-189 (274)
192 TIGR00751 menA 1,4-dihydroxy-2 21.9 5.7E+02 0.012 22.7 8.4 60 81-141 106-168 (284)
193 PF03606 DcuC: C4-dicarboxylat 21.8 5.7E+02 0.012 24.6 8.7 18 183-200 102-119 (465)
194 PF07226 DUF1422: Protein of u 21.6 3.6E+02 0.0079 20.4 5.6 15 62-76 40-54 (117)
195 TIGR02587 putative integral me 21.5 5.7E+02 0.012 22.6 9.6 21 280-300 87-110 (271)
196 PRK12489 anaerobic C4-dicarbox 20.1 3.2E+02 0.0069 26.2 6.3 15 123-137 7-21 (443)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=3.8e-39 Score=287.09 Aligned_cols=299 Identities=41% Similarity=0.757 Sum_probs=274.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccc------cccchHHHHHHH
Q 019247 17 MALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR------LQVSWYWYLLLG 90 (344)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~------~~~~~~~~~~~g 90 (344)
++|+.++.+++|+++++++++++..++.+.+++...|..++++.+....++..++..+|++. .+++|+++++++
T Consensus 7 ~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla 86 (334)
T PF06027_consen 7 FTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHH
Confidence 67999999999999999999999999999999887799999999999999988887766543 567899999999
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeeccccc--CCCCCCch
Q 019247 91 FVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEM--AGGGGSRP 168 (344)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~--~~~~~~~~ 168 (344)
++.+.+|++.+.|++|++.+.++++.++..+++++++++++|||+++.|++|+.+++.|+.++...|..+ +.+..++.
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~ 166 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNP 166 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987542 22245678
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHH
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMF 248 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (344)
..|+++++.|+++||+++++.|+..++.|+....++.++++.++..+....+|..++...+|+......+++..++.+..
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888899888888888888778888888889999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCCC
Q 019247 249 YTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLPI 315 (344)
Q Consensus 249 ~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 315 (344)
|.+....++..+|+..++...+..+++++++++++|+++++..++|.++|++|.+++...+++.+++
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999877654443
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=9.4e-33 Score=251.46 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcc--c-c---ccchHHHHHHHHHHHHHHHHHHHhhhc
Q 019247 33 FSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--R-L---QVSWYWYLLLGFVDVQGNFLFNKAFQF 106 (344)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~-~---~~~~~~~~~~g~~~~~~~~~~~~al~~ 106 (344)
++..+.....+...+.+. +|+.+.++|+.+++++++++.+++++ + . ++++....+.|+++...+.+++.|++|
T Consensus 23 ~~~~~~~~~~k~a~~~G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~ 101 (358)
T PLN00411 23 TSVVGISTLFKVATSKGL-NIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEY 101 (358)
T ss_pred HHHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666677 99999999999999999998865432 1 2 233456777777774346688999999
Q ss_pred cchhHHHHhhcCchhHHHHHHHHH------hcccchHHHHHHHHHHhhhceeeeeccccc------------------CC
Q 019247 107 TSISSVTLLDCCAIPCAIVFTWVF------LGTRYSVWQLFGASLCVLGLGLMLLSDAEM------------------AG 162 (344)
Q Consensus 107 ~~~~~~~~l~~~~p~~~~lla~l~------l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~------------------~~ 162 (344)
++++.++++.+++|+++.++++++ +|||+++++++|++++++|+.++...+... +.
T Consensus 102 tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~ 181 (358)
T PLN00411 102 SNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLS 181 (358)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccC
Confidence 999999999999999999999999 699999999999999999999876532110 00
Q ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHHHHhhccccccc--cccchhhHHHHH
Q 019247 163 GGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDR-VEVVCMIGVYGLLVSVVQLSTLELKSLES--VKWSTDIILSFV 239 (344)
Q Consensus 163 ~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 239 (344)
....+...|+++.+.++++||+|++.+|+..++.++ ...+++...++.+...++....++.+... ..++...+..++
T Consensus 182 ~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y 261 (358)
T PLN00411 182 SSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVT 261 (358)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHH
Confidence 111223569999999999999999999999887754 45566666666665545555544322211 122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 240 GNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
.. +.+.++|.+|++++++.+|.+++...+++|+++++++++++||++++.+++|+++|+.|+++.++.++++
T Consensus 262 ~~-i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 262 MA-IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HH-HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22 3356789999999999999999999999999999999999999999999999999999999998755544
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=6.3e-31 Score=235.68 Aligned_cols=281 Identities=15% Similarity=0.128 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcc--ccccchHHHHHHHHHHHHH
Q 019247 19 LRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--RLQVSWYWYLLLGFVDVQG 96 (344)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 96 (344)
-|.+..++...+...++|++++...|...++. +|..++++|+..++++++++...+++ +.++++......|.++...
T Consensus 3 ~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 3 FRQLLPLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 35566778888888999999999999888776 99999999999999998888765443 2344566677778776444
Q ss_pred -HHHHHHhh-hccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHH
Q 019247 97 -NFLFNKAF-QFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDIL 174 (344)
Q Consensus 97 -~~~~~~al-~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l 174 (344)
+.+++.+. ++++++.++++.++.|+++.+++++ +|||+++++++|+.++++|+.++...+ +. .....|+++
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~-----~~-~~~~~G~l~ 154 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG-----NL-SGNPWGAIL 154 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCc-----cc-ccchHHHHH
Confidence 77788888 9999999999999999999999985 699999999999999999998875422 11 233579999
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhHHHHHHHHHHHHHHHHHHH
Q 019247 175 VIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLES-VKWSTDIILSFVGNAASSFMFYTLVP 253 (344)
Q Consensus 175 ~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (344)
+++++++||.+.+..||..++ ++.....+....+..... +........... .+...+....+.++ +++..++.+|+
T Consensus 155 ~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~i-~~s~~~~~l~~ 231 (292)
T PRK11272 155 ILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLL-IASLLSGERLTALPTLSGFLALGYLAV-FGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHH-HHHHHcCCcccccCCHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999997654 445556677777766663 333222222111 12233444455555 66889999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 254 FVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 254 ~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
+++++.++..++...+++|+++++++++++||++++.+++|+.+++.|+++.+..++
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999877554
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1e-30 Score=234.55 Aligned_cols=274 Identities=14% Similarity=0.112 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH-HHHHHHhhhc
Q 019247 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQF 106 (344)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~ 106 (344)
..+.+.++|++++...|...++. +|..+.++|+.++++++.++.. +++.++.+++..+.+.+.... +.+++.++++
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35566789999999999988787 9999999999999998877542 222333344455556555544 5566667654
Q ss_pred ----cchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCC----CCCCchHHHHHHHHHh
Q 019247 107 ----TSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAG----GGGSRPLLGDILVIAG 178 (344)
Q Consensus 107 ----~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~----~~~~~~~~G~~l~l~~ 178 (344)
.+++.++++.+++|+++.+++++++|||+++++++|++++++|+.++..++...+. +...+...|+.+++.+
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999998865421000 0112235699999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019247 179 AIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKL 258 (344)
Q Consensus 179 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (344)
+++||+|+++.||..++.++..... ..+.+....+.. .++......++..+.+..+ .+++++.+|.+|++++++
T Consensus 165 a~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~t~~~~~l~~~al~~ 238 (295)
T PRK11689 165 AFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYF-LSPQPAMVFSLPAIIKLLL--AAAAMGFGYAAWNVGILH 238 (295)
T ss_pred HHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHH-HhcCccccCCHHHHHHHHH--HHHHHHHHHHHHHHHHHc
Confidence 9999999999999887777665432 222233322222 2222211223333333333 335688899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 259 SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 259 ~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.++..++...+++|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus 239 ~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 239 GNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred cCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999999999999999999999999876554
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=8.3e-30 Score=229.21 Aligned_cols=272 Identities=15% Similarity=0.146 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH-HHHHHHhhhc-
Q 019247 29 QLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQF- 106 (344)
Q Consensus 29 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~- 106 (344)
.+.+.++|++++...|...++. +|..++++|+.++++.++++..++ +.+++.....|.+.... ..+++.+++|
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVARP----KVPLNLLLGYGLTISFGQFAFLFCAINFG 83 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566789999999999888776 999999999999887766654321 12333444455554444 4466788988
Q ss_pred cchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHH
Q 019247 107 TSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSY 186 (344)
Q Consensus 107 ~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~ 186 (344)
.+++.++++.+++|+++.+++++++|||++++++++++++++|+.++..++. +.......|+.+++.++++|+.|.
T Consensus 84 ~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~----~~~~~~~~G~~l~l~aal~~a~~~ 159 (299)
T PRK11453 84 MPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL----NGQHVAMLGFMLTLAAAFSWACGN 159 (299)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC----CCcchhHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999998876431 112223579999999999999999
Q ss_pred HHHHHhhcCCChH---HHHHHHHHHHHHHHHHHHHhhcccc-----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019247 187 VGEEFLVKKIDRV---EVVCMIGVYGLLVSVVQLSTLELKS-----LESVKWSTDIILSFVGNAASSFMFYTLVPFVLKL 258 (344)
Q Consensus 187 v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (344)
++.||..++.+.. ....+....+.+.........+++. ....++..+....+.++ +++...|.+|++++++
T Consensus 160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i-~~t~~~~~l~~~~l~~ 238 (299)
T PRK11453 160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF-VATIVGYGIWGTLLGR 238 (299)
T ss_pred HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 9999986654332 3333444443332211222223211 11222334444555665 7788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 259 SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 259 ~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.++.+++...+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 239 ~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 239 YETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999876554
No 6
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.97 E-value=1.8e-32 Score=225.98 Aligned_cols=301 Identities=42% Similarity=0.800 Sum_probs=267.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH
Q 019247 18 ALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQGN 97 (344)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 97 (344)
.+|.++++.+|+++++++.+.++.++.++.++...|..++|..+.+.+++..+++.+|++..+..|++++++++..+-+|
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaN 92 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEAN 92 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeeccc
Confidence 68899999999999999999999999999999988999999999999999999999988777888999999999999999
Q ss_pred HHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc-cCCCCCCchHHHHHHHH
Q 019247 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAGGGGSRPLLGDILVI 176 (344)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~~~~~~~~~G~~l~l 176 (344)
++...|+||++...++++.+-..+.+.+++|+++|.|.++.++.|+++|+.|+.++..+|-. ++..++++...|+.+.+
T Consensus 93 y~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 93 YFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVI 172 (336)
T ss_pred EEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998865 45556788899999999
Q ss_pred HhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 177 AGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 177 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
+++-+||..++..+...|+.|..+++....++|+++..+. .+++........|+..... ++...+++++.|.+....+
T Consensus 173 ~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~-yl~f~L~MFllYsl~pil~ 250 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFL-YLRFALTMFLLYSLAPILI 250 (336)
T ss_pred ecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHH-HHHHHHHHHHHHHhhHHhe
Confidence 9999999999999999999999999999999999999877 6666666666667644444 3446688999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCCCCcccCCC
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLPIPALENGN 322 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~ 322 (344)
|..+++..++..+++-.++.++ ..||-..+|..++..+.+..|.++|..+++.+++.+..+..+
T Consensus 251 k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~r~~~v~~ 314 (336)
T KOG2766|consen 251 KTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEELRKGQVVS 314 (336)
T ss_pred ecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHhhccCcccc
Confidence 9999999999999999999988 566777999999999999999999976666555444444333
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=4.6e-29 Score=220.37 Aligned_cols=256 Identities=17% Similarity=0.060 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH-HHHHHHhhhccchhHHHH
Q 019247 36 ALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQFTSISSVTL 114 (344)
Q Consensus 36 ~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~ 114 (344)
||.++...|...++..+|....+.|...+.+++.+....+ +.++++.++...|.++... +.+++.|++|++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 7788888888776665889999999998888887765544 4555667788888877666 778899999999999999
Q ss_pred hhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 019247 115 LDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (344)
Q Consensus 115 l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~ 194 (344)
+.++.|+++++++++++|||+++++++|+.++++|+.++...+ .......|+.+++.++++|+.+.+..|+..+
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG------NLSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC------cccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999999999999999999999999999999999986532 1234568999999999999999999999987
Q ss_pred CCChH--HHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019247 195 KIDRV--EVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSD 272 (344)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p 272 (344)
+.|+. ....+.+..+.++. .+.....++.. ..+...+....+.+. +++..+|.++++++++.++.+++.+.+++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLL-LPFAWFLGPNP-QALSLQWGALLYLGL-IGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHH-HHHHHhcCCCC-CcchHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 76643 44445677777766 34433322221 122223333444455 667889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHhHHHHHHHHH
Q 019247 273 MWAVILRIFCYHQQVNWTYYLAFAAVLIGL 302 (344)
Q Consensus 273 ~~~~i~~~~~~~e~~~~~~~~G~~li~~g~ 302 (344)
+++++++++++||++++.+++|+.+++.|+
T Consensus 230 v~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=5.8e-28 Score=216.52 Aligned_cols=270 Identities=16% Similarity=0.100 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHHHhhh
Q 019247 27 LGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR-QRLQVSWYWYLLLGFVDVQGNFLFNKAFQ 105 (344)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~al~ 105 (344)
...+.+.+.|+.+....|...++. +|..+.++|+.+++++++++...++ +..+++++..+..|.+....+.+++.+++
T Consensus 15 ~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~ 93 (293)
T PRK10532 15 LLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQ 93 (293)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456677888888888777666 9999999999999998887764332 23355666777788776555888899999
Q ss_pred ccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHH
Q 019247 106 FTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMS 185 (344)
Q Consensus 106 ~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~ 185 (344)
|++++.++++..+.|+++.+++ +||++.. .++.++++|+.++...+. +.+..+..|+++.++++++||.|
T Consensus 94 ~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~----~~~~~~~~G~ll~l~aa~~~a~~ 163 (293)
T PRK10532 94 TVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ----DVSHVDLTGAALALGAGACWAIY 163 (293)
T ss_pred cccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC----CcccCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877 3665544 456778999988775331 11223457999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019247 186 YVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLI 265 (344)
Q Consensus 186 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~ 265 (344)
.+..||..++.++... .+..+++.++. .+....+... ...++..+....+.++ +++..+|.+|++++++.++..++
T Consensus 164 ~v~~r~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~-~~~~~~~~~~~l~lgv-~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 164 ILSGQRAGAEHGPATV-AIGSLIAALIF-VPIGALQAGE-ALWHWSILPLGLAVAI-LSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHHHHhccCCchHH-HHHHHHHHHHH-HHHHHHccCc-ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhHHH
Confidence 9999999877777665 44555665555 3444332221 1122222333345556 77889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccC
Q 019247 266 LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 266 ~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
...+++|+++.+++++++||++++.+++|+++|++|++...++.++
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999876544
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.2e-28 Score=222.27 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=203.2
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHH---hhc-cccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcC
Q 019247 43 AVITDLGVDAPITQSVLCYLSLALAYGGILL---YRR-QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCC 118 (344)
Q Consensus 43 ~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~---~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~ 118 (344)
+|...+....|...++.|+..+.+.+.+... .++ +..+++++..+..|++......+.+.|++|++++.++++.++
T Consensus 21 NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~ 100 (302)
T TIGR00817 21 NKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAM 100 (302)
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3555556667999999999998877655521 111 223557788888999876668889999999999999999999
Q ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhc--CC
Q 019247 119 AIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK--KI 196 (344)
Q Consensus 119 ~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~--~~ 196 (344)
+|+++++++++++|||+++++++|++++++|+.+....+ .+....|++++++++++|+++.+..||..+ +.
T Consensus 101 ~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~ 173 (302)
T TIGR00817 101 EPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL 173 (302)
T ss_pred chHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999998653311 133457999999999999999999999987 67
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcccccccccc-------c-hhhHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019247 197 DRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKW-------S-TDIIL-SFVGNAASSFMFYTLVPFVLKLSGATMLILS 267 (344)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~ 267 (344)
|+.+.+.+....+.+...+.....++.+....++ . ...+. .+.....+....+.+++.++++.++.+.++.
T Consensus 174 ~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~ 253 (302)
T TIGR00817 174 DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG 253 (302)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 9999999999998887743333333322111000 1 11121 1111111233344566689999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCC
Q 019247 268 VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 314 (344)
Q Consensus 268 ~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 314 (344)
.+++|+++++++++++||+++..+++|.++++.|++++++.+++|++
T Consensus 254 ~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 254 NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 99999999999999999999999999999999999999976544433
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=7.3e-27 Score=209.71 Aligned_cols=272 Identities=14% Similarity=0.063 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccc-c----ccchH--HHHHHHHH
Q 019247 20 RTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR-L----QVSWY--WYLLLGFV 92 (344)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~----~~~~~--~~~~~g~~ 92 (344)
++.++.+... .+.++|+.+....|.. .+. +|.++.++|+.++.++++++...+++. . .++++ .....+.+
T Consensus 5 ~~~~g~~~~l-~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLAL-AAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 4445665544 4566788877777765 355 899999999999998887776543211 0 11222 22335555
Q ss_pred HHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHH
Q 019247 93 DVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLG 171 (344)
Q Consensus 93 ~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G 171 (344)
+... +.+++.|++++++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++ + +.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~----~---~~---- 150 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF----G---SL---- 150 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc----C---Cc----
Confidence 5555 8889999999999999999999999999999999999999999999999999999886532 1 11
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCC--hHHHHHHHHHHHHHHHHHHHHhhccccccccccchh-hHHHHHHHHHHHHHH
Q 019247 172 DILVIAGAIFFAMSYVGEEFLVKKID--RVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTD-IILSFVGNAASSFMF 248 (344)
Q Consensus 172 ~~l~l~~~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 248 (344)
..+.++++++||.|.+..|+..++.. ......+....+.+.. .+. .+.. ......... .+..++..++.+.++
T Consensus 151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~t~i~ 226 (296)
T PRK15430 151 PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL-FAI--ADSS-TSHMGQNPMSLNLLLIAAGIVTTVP 226 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH-HHH--ccCC-cccccCCcHHHHHHHHHHHHHHHHH
Confidence 14678899999999999998754322 2222333333333322 111 1111 111111111 122233333456789
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 249 YTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 249 ~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
|.+|++++++.++..++...+++|+++.+++++++||++++.+++|+++|+.|+.+...+.
T Consensus 227 ~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 227 LLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888776543
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=6.6e-26 Score=207.41 Aligned_cols=256 Identities=14% Similarity=0.105 Sum_probs=197.9
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHh--hc-cc---cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhc
Q 019247 44 VITDLGVDAPITQSVLCYLSLALAYGGILLY--RR-QR---LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDC 117 (344)
Q Consensus 44 ~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~-~~---~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~ 117 (344)
|...+.+..|.+++++|++++.+++..+... ++ ++ .+.+++..+.+|+++...+...+.|+++++++.++++.+
T Consensus 69 K~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika 148 (350)
T PTZ00343 69 KLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKA 148 (350)
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4445466339999999999998765544322 11 11 123567888999998888777789999999999999999
Q ss_pred CchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC-
Q 019247 118 CAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI- 196 (344)
Q Consensus 118 ~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~- 196 (344)
+.|+++++++++++|||++++++.+++++++|+.+....+ ......|+++++++++++|+++++.|+..++.
T Consensus 149 ~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 149 AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999987632 12346799999999999999999999988654
Q ss_pred ------ChHHHHHHHHHHHHHHHHHHHHh-hccccccc------cccchhhHH-HHHHHHHHHHHHHHHHH----HHHHH
Q 019247 197 ------DRVEVVCMIGVYGLLVSVVQLST-LELKSLES------VKWSTDIIL-SFVGNAASSFMFYTLVP----FVLKL 258 (344)
Q Consensus 197 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~ 258 (344)
++.....+....+.++. +|... .|...... ..+..+.+. .+... +.+++.+.+++ .++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~-lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i-~~s~l~~~l~n~~~f~~l~~ 299 (350)
T PTZ00343 222 EIGENLTASNIYMLLTLIASLIS-LPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKI-FFSGVWYYLYNEVAFYCLGK 299 (350)
T ss_pred cccccCCHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 35555555677888777 45433 44321110 011111111 12223 44677777777 49999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 259 SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 259 ~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
.++.+.++...++|+++++.+++++||++++.+++|.++++.|+++|++.
T Consensus 300 ~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 300 VNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred cchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999864
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=4.5e-25 Score=196.80 Aligned_cols=265 Identities=15% Similarity=0.097 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh-----ccccccchHHHHHHHHHH-HHHHHHH
Q 019247 27 LGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR-----RQRLQVSWYWYLLLGFVD-VQGNFLF 100 (344)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~ 100 (344)
+....+++........++...+ . ++. .+++.....+++.|+...+ +++.+++++.....+.++ .....++
T Consensus 5 ~~~~aa~~~a~~~~~~k~~~~~-~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 5 LVVFSALMHAGWNLMAKSHADK-E-PDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHhhcCCc-h-hHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444445554445543 2 333 4666677777777776543 122234445455555544 4448888
Q ss_pred HHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHH
Q 019247 101 NKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAI 180 (344)
Q Consensus 101 ~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~ 180 (344)
+.|+++.+++.++++.++.|+++++++++++|||+++++|+|+.+++.|+.++..++. . .....|+.+++.+++
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~---~---~~~~~g~~~~l~aal 154 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF---A---QHRRKAYAWALAAAL 154 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc---c---ccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998875431 1 123468889999999
Q ss_pred HHHHHHHHHHHhhcCCChHH----HHHHHHHHH-HHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 019247 181 FFAMSYVGEEFLVKKIDRVE----VVCMIGVYG-LLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFV 255 (344)
Q Consensus 181 ~~a~~~v~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (344)
+|++|.+..|+..++.++.. ...+....+ .++. ......+..... ......+......++++..+|.+|+++
T Consensus 155 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~l~~~l~~~a 231 (281)
T TIGR03340 155 GTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFL-LLYLKRHGRSMF--PYARQILPSATLGGLMIGGAYALVLWA 231 (281)
T ss_pred HHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHH-HHHHHHhccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988654443322 222222222 1211 111111111111 111112222233336678899999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHh
Q 019247 256 LKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLII 304 (344)
Q Consensus 256 l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l 304 (344)
+++.++..++...+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus 232 l~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 232 MTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999999999876
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=3.2e-22 Score=179.26 Aligned_cols=268 Identities=23% Similarity=0.290 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHHHHH-HHHHHHhhhcc
Q 019247 32 SFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR---QRLQVSWYWYLLLGFVDVQG-NFLFNKAFQFT 107 (344)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~ 107 (344)
..+.|+......+...++..++....+.|...+.+...+....++ ++..+++++..+.+.+.... ..+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (292)
T COG0697 15 WGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT 94 (292)
T ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347788877777666655435666667799888888444443332 12222234555666555555 88889999999
Q ss_pred chhHHHHhhcCchhHHHHHHH-HHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHH
Q 019247 108 SISSVTLLDCCAIPCAIVFTW-VFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSY 186 (344)
Q Consensus 108 ~~~~~~~l~~~~p~~~~lla~-l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~ 186 (344)
+++.++++.++.|+++.++++ +++|||++++++.++.+.++|+.++..++. .+... ...|+.+.+.+++++|++.
T Consensus 95 ~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~---~~~~~-~~~g~~~~l~a~~~~a~~~ 170 (292)
T COG0697 95 SASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG---GGGIL-SLLGLLLALAAALLWALYT 170 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC---cchhH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 677999999999999999999999988653 11111 5789999999999999999
Q ss_pred HHHHHhhcCCChHHHHH-HHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019247 187 VGEEFLVKKIDRVEVVC-MIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLI 265 (344)
Q Consensus 187 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~ 265 (344)
+..|+.. +.++..... +... +......+....+.. ....+..+......+. ++++.++.++.++++..++..++
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-~~~~i~~~~~~~~~~~~~~~~~~ 245 (292)
T COG0697 171 ALVKRLS-RLGPVTLALLLQLL-LALLLLLLFFLSGFG--APILSRAWLLLLYLGV-FSTGLAYLLWYYALRLLGASLVA 245 (292)
T ss_pred HHHHHhc-CCChHHHHHHHHHH-HHHHHHHHHHhcccc--ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchHHH
Confidence 9999987 556655555 3333 222221222222111 1222234444445555 54568999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 266 LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 266 ~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
....++|+++.+++++++||+++..+++|+.+++.|+++...+
T Consensus 246 ~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 246 LLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999876
No 14
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.91 E-value=2.2e-21 Score=174.71 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=220.1
Q ss_pred HHHHHHhhcCCCh--hHHHHHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHh
Q 019247 40 FTTAVITDLGVDA--PITQSVLCYLSLALAYGGILLYRR--QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL 115 (344)
Q Consensus 40 ~~~~~l~~~~~~~--p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l 115 (344)
..-.++..+.... |..+++..+....+...+.....+ ++.+.+++.++..+++......+.+.|++|+|.+...++
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ 96 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVF 96 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4444666554434 999999999998887776665433 455667789999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCC---CCchHHHHHHHHHhHHHHHHHHHHHHHh
Q 019247 116 DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGG---GSRPLLGDILVIAGAIFFAMSYVGEEFL 192 (344)
Q Consensus 116 ~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~---~~~~~~G~~l~l~~~~~~a~~~v~~~~~ 192 (344)
.++.|+.+++++.+++|+|++.+++.++.+..+|+.+....+...+... ..+...|+.+.+.+.++.|...+.+||.
T Consensus 97 ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~ 176 (303)
T PF08449_consen 97 KSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKL 176 (303)
T ss_pred hhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765321111 1122349999999999999999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHHHHHHHHHhhc-cccccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019247 193 VKKI--DRVEVVCMIGVYGLLVSVVQLSTLE-LKSLES---VKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLIL 266 (344)
Q Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~ 266 (344)
.+++ ++.+.+++..+++.++..+.....+ ++.... ...++..+..+....++...+........++.++...++
T Consensus 177 ~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~ 256 (303)
T PF08449_consen 177 FKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTI 256 (303)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 8765 6889999999999998865544421 111111 112333444445555666777778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 267 SVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 267 ~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
...+..+++++++++++|+++++.+|+|.++++.|..++...++|+
T Consensus 257 v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 257 VTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999877765
No 15
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=7e-22 Score=173.98 Aligned_cols=237 Identities=15% Similarity=0.019 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcc------c---c-ccc-hHHHHHHHHHHHHH
Q 019247 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ------R---L-QVS-WYWYLLLGFVDVQG 96 (344)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~------~---~-~~~-~~~~~~~g~~~~~~ 96 (344)
..+.+.++|+.+....|.. .+. +|.+++++|++++++++.++...+++ + . +++ +......|.+....
T Consensus 6 ~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 83 (256)
T TIGR00688 6 VSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFN 83 (256)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 3445667899988888874 355 99999999999999887776533221 1 1 112 12244555555555
Q ss_pred HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHH
Q 019247 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVI 176 (344)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l 176 (344)
+.+++.|++++++++++++.+++|+++++++++++|||+++++++++.++++|+.++..++ . +.. .+++
T Consensus 84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~----~---~~~----~~~l 152 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK----G---SLP----WEAL 152 (256)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc----C---Cch----HHHH
Confidence 8899999999999999999999999999999999999999999999999999998875422 1 111 3578
Q ss_pred HhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhh-cccccccccc-chhhHHHHHHHHHHHHHHHHHHHH
Q 019247 177 AGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTL-ELKSLESVKW-STDIILSFVGNAASSFMFYTLVPF 254 (344)
Q Consensus 177 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 254 (344)
.++++||.|.+..|+..++ +....... .+...++. .+.... +.......++ ..+.+..+.+ +.+..+|.++++
T Consensus 153 ~aa~~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~t~i~~~l~~~ 227 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVA-IYYLLQTDFATVQQTNPFPIWLLLVLAG--LITGTPLLAFVI 227 (256)
T ss_pred HHHHHHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHH-HHHHHHhccCcccccCchhHHHHHHHHH--HHHHHHHHHHHH
Confidence 8999999999999997543 33222221 22222222 111111 1111111111 2344444444 347789999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 255 VLKLSGATMLILSVLTSDMWAVILRIFC 282 (344)
Q Consensus 255 ~l~~~~a~~~~~~~~~~p~~~~i~~~~~ 282 (344)
++++.++..++...+++|++++++++++
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999764
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.90 E-value=9.5e-21 Score=156.95 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=200.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHH
Q 019247 52 APITQSVLCYLSLALAYGGILL-YRRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVF 130 (344)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~ 130 (344)
.|.-.++.|...++++++++.. +++|..+++|......|......|.+||.+++..|.+.+..+-++-|+..++++
T Consensus 39 G~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~--- 115 (292)
T COG5006 39 GAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS--- 115 (292)
T ss_pred ChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh---
Confidence 7899999999999999988776 455666778888889998877779999999999999999999999999987766
Q ss_pred hcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 019247 131 LGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGL 210 (344)
Q Consensus 131 l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~ 210 (344)
.-+.++.+-+.+++.|..++...+ ++...-+..|..+++.++.||++|.+..||..+..|..+.+..-+.++.
T Consensus 116 ---sRr~~d~vwvaLAvlGi~lL~p~~----~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAa 188 (292)
T COG5006 116 ---SRRLRDFVWVALAVLGIWLLLPLG----QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAA 188 (292)
T ss_pred ---ccchhhHHHHHHHHHHHHhheecc----CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHH
Confidence 234556666778888888877644 2334556789999999999999999999999877777888888888888
Q ss_pred HHHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 019247 211 LVSVVQLSTLELK-SLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNW 289 (344)
Q Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~ 289 (344)
++. +|+...+.. .+ ..|+-....+..++ +++.+-|.+-..++++.+....+.++.+||.++.+.+++++||.+|+
T Consensus 189 viv-~Pig~~~ag~~l--~~p~ll~laLgvav-lSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 189 LIV-LPIGAAQAGPAL--FSPSLLPLALGVAV-LSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred HHH-hhhhhhhcchhh--cChHHHHHHHHHHH-HhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence 888 566543221 11 22233333333444 66789999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhhhccccCC
Q 019247 290 TYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 290 ~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
.||.|+..|+.+..=.+...|++
T Consensus 265 ~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 265 IQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHHHHHHHHHhccccccCCC
Confidence 99999999999988776655443
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.88 E-value=1e-23 Score=175.64 Aligned_cols=281 Identities=16% Similarity=0.258 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcccc---ccchHHHHHHHHHHHHHHHH
Q 019247 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL---QVSWYWYLLLGFVDVQGNFL 99 (344)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 99 (344)
+++.+..+. ..+-.+.+.+++... .+|..+.-.|.++-.++..|...+++... +...+++++.|+.+..+..+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvml 113 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVML 113 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHH
Confidence 344443333 444444555555543 37888889997777777777666554322 22334667788888899999
Q ss_pred HHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc-cCC-----CC-CCchHHHH
Q 019247 100 FNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAG-----GG-GSRPLLGD 172 (344)
Q Consensus 100 ~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~-----~~-~~~~~~G~ 172 (344)
.|+|++|.+.+++.++..++|.+|.+++|+++|||.++.+.++..+.+.||+++..+..- +++ +. ....+.|.
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 999999999999999999999999999999999999999999999999999999877431 111 11 13356788
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 019247 173 ILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLV 252 (344)
Q Consensus 173 ~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (344)
..++.++++-|--.++.|+..|+.|....+.+....+++..++........+++. ...-+.+++-+++..++++.+.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~---cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPH---CGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCc---cccceEEEEEehhhhhHHHHHH
Confidence 9999999999999999999999988888888888888888755544333223322 2222223323345577889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 253 PFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 253 ~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
..+++.-.+-.++++.++..+++.++.+++|||.||++.|.|.++++.+.+.....+.
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876554
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.86 E-value=4.2e-19 Score=158.50 Aligned_cols=267 Identities=14% Similarity=0.049 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccc---cchHHHHHHHHHHHHHHHHHHHhh
Q 019247 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQ---VSWYWYLLLGFVDVQGNFLFNKAF 104 (344)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~al 104 (344)
..+.+.++||+.....|... +. ++.+.. |..++.+++..+....+++.+ +.+..-++.|.....++.+++.|.
T Consensus 5 ~~lia~~~wGs~g~~~k~~~-g~-~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai 80 (290)
T TIGR00776 5 IALIPALFWGSFVLINVKIG-GG-PYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM 80 (290)
T ss_pred HHHHHHHHHhhhHHHHhccC-CC-HHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34455677888666666554 55 444433 676676666554433222211 111223334444555589999999
Q ss_pred hccchhHHHHhhc-CchhHHHHHHHHHhcccchHHH----HHHHHHHhhhceeeeecccccCCCCC-CchHHHHHHHHHh
Q 019247 105 QFTSISSVTLLDC-CAIPCAIVFTWVFLGTRYSVWQ----LFGASLCVLGLGLMLLSDAEMAGGGG-SRPLLGDILVIAG 178 (344)
Q Consensus 105 ~~~~~~~~~~l~~-~~p~~~~lla~l~l~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~~~~-~~~~~G~~l~l~~ 178 (344)
++.+.+.+..+.+ +.+++..+++.+++|||.++++ ++|++++++|+.++...+.++..+++ .+...|+.+++.+
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMS 160 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHH
Confidence 9999999988877 8888999999999999999999 99999999999998776531111011 3346799999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHH---HHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 019247 179 AIFFAMSYVGEEFLVKKIDRVEVVCMIG---VYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFV 255 (344)
Q Consensus 179 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (344)
+++|+.|.+..|+. +.|+.+..+.+. +.+..+...+. .+. .+.. ....+.... .++....++.+|..+
T Consensus 161 g~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~---~~~~-~~~~~~~~~-~Gi~~~ia~~~y~~~ 231 (290)
T TIGR00776 161 TIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH--ILA---KPLK-KYAILLNIL-PGLMWGIGNFFYLFS 231 (290)
T ss_pred HHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH--hcc---cchH-HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999976 367777744433 33333332232 110 1111 112222222 223368889999999
Q ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHHhhhc
Q 019247 256 LK-LSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYY----LAFAAVLIGLIIYST 307 (344)
Q Consensus 256 l~-~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~ 307 (344)
.+ +.++..++.+...+|+.+.+++++++||+.++.|+ +|+++++.|+.+...
T Consensus 232 ~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 232 AQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 99 99999999999999999999999999999999999 999999999998764
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.83 E-value=7.1e-18 Score=143.78 Aligned_cols=272 Identities=15% Similarity=0.065 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh--cc---ccccchH--HHHHHHHHHH
Q 019247 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR--RQ---RLQVSWY--WYLLLGFVDV 94 (344)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~--~~---~~~~~~~--~~~~~g~~~~ 94 (344)
.+|++.+. .+-++||....-.++.+ .. ++.++...|..-+..+++...... ++ ...++++ ..+......+
T Consensus 6 ~~Gil~~l-~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLAL-LAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHHH-HHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 35666665 55678888666666664 55 788999999887777766555432 21 1122222 2233333344
Q ss_pred HH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHH
Q 019247 95 QG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDI 173 (344)
Q Consensus 95 ~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~ 173 (344)
.. .+.+..|.++..+-++++=++..|++.++++++|+|||+++.||+++.++.+||....... ++-++.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-------g~lpwv--- 152 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-------GSLPWV--- 152 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCcHH---
Confidence 44 4566799999999999999999999999999999999999999999999999998887733 122232
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 019247 174 LVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVP 253 (344)
Q Consensus 174 l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (344)
++.=++.|++|...-|+. +.|+.+-....+++-.+..++.....+.+.......+...+..+...+..+.+...++.
T Consensus 153 -al~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~ 229 (293)
T COG2962 153 -ALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA 229 (293)
T ss_pred -HHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence 444578999999887764 35778888888888877774443333322211111244445555566677888999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 254 FVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 254 ~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
.+-++.+-++.+.+.+.+|.+-.+++++++||+++..++++.++|.+|++++..+.
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998755
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.3e-17 Score=142.18 Aligned_cols=265 Identities=15% Similarity=0.216 Sum_probs=218.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHH
Q 019247 50 VDAPITQSVLCYLSLALAYGGILLYRR--QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFT 127 (344)
Q Consensus 50 ~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla 127 (344)
+.+|..+.+...+++.++-..++-+++ ...+.+|+.+...++.+....++.|.|++|++-....+-.+.-.+-++++.
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 456899999998888887755554332 234567889999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHhhhceeeeecccccC--CCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC--ChHHHHH
Q 019247 128 WVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMA--GGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVC 203 (344)
Q Consensus 128 ~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~--~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~--~~~~~~~ 203 (344)
.++.|+|++..++....++-+|+.+....+..++ ..+..+..+|+.+....-++.++.+..+++..++. ++...++
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 9999999999999999999999999988754321 22445778999999999999999999999998865 7899999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019247 204 MIGVYGLLVSVVQLSTLELKSLESV---KWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRI 280 (344)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~ 280 (344)
+..+++.+... ...+..+...+.. .-++..+.-+.....+..+++.+.++-+++.|+.+.+.++.+.-++++.++.
T Consensus 208 ~vNLf~~i~~~-~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~ 286 (327)
T KOG1581|consen 208 GVNLFSAILNG-TYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSC 286 (327)
T ss_pred HHHHHHHHHHH-HhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 3344333322222 2234444445556677778899999999999999999999999999999999
Q ss_pred HHhccccchhhHhHHHHHHHHHHhhhccccCCCCC
Q 019247 281 FCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLPI 315 (344)
Q Consensus 281 ~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 315 (344)
+.+|.++++.||.|..+++.|+.+-...+++++.+
T Consensus 287 i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~~~ 321 (327)
T KOG1581|consen 287 IVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKNQP 321 (327)
T ss_pred HHhCCccchhhccCeeeehHHHHHHHHHHHhccCc
Confidence 99999999999999999999999988776664333
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=151.61 Aligned_cols=226 Identities=18% Similarity=0.260 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc-cCCCC
Q 019247 86 YLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAGGG 164 (344)
Q Consensus 86 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~~~ 164 (344)
.+....+...+++.+..|++|++++..+++.+++-+||..++.++..||++..+.+++++++.|++++...+.. .+...
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 34455666777999999999999999999999999999999999999999999999999999999999987642 12223
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccchh-hHHH
Q 019247 165 GSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI----DRVEVVCMIGVYGLLVSVVQLSTLEL--KSLESVKWSTD-IILS 237 (344)
Q Consensus 165 ~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 237 (344)
..+...|.++++++++.||.|.++.||-..+. |...+..+.+++..++...+..+.+. .+..+.+-... ..+.
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv 321 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVV 321 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence 45568999999999999999999999987665 34455555666666666433333322 12222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 238 FVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
+.+ .++++++-++|.++.-..++.++..-+.+..+.+++.+.++-|..+++.+++|...|+.|.+..+......
T Consensus 322 ~~~-ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 322 FNN-LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred Hhh-HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 344 47788999999999999999999999999999999999999999999999999999999999999866543
No 22
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.80 E-value=6.6e-19 Score=155.50 Aligned_cols=258 Identities=17% Similarity=0.260 Sum_probs=211.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHH
Q 019247 49 GVDAPITQSVLCYLSLALAYGGILLYRRQR-----LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCA 123 (344)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 123 (344)
++..|.+++..+...+.+.+......+..+ .+..+...+.+|+....+..+.+.|+.+.+++.++.+..++|+++
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t 123 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT 123 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence 676799999998888887776665544322 234678888899998888999999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhc--C--CChH
Q 019247 124 IVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK--K--IDRV 199 (344)
Q Consensus 124 ~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~--~--~~~~ 199 (344)
+++++++.+|+.+...+.++...+.||.+....+ ...++.|...++.+.+..++.+++.|+..+ + .|+.
T Consensus 124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~ 196 (316)
T KOG1441|consen 124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSM 196 (316)
T ss_pred HHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCch
Confidence 9999999999999999999999999999988843 356689999999999999999999999984 2 3899
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019247 200 EVVCMIGVYGLLVSVVQLSTL-ELKSL---ESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWA 275 (344)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~ 275 (344)
+...+..-.++..+++|+... ++... ...+|+...+. .....++.+..+...+..+.+.+|.+.++.+...-++.
T Consensus 197 ~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~v 275 (316)
T KOG1441|consen 197 NLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVV 275 (316)
T ss_pred HHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEE
Confidence 999999999999886576544 33222 22233322222 22222556677888888999999999999999999999
Q ss_pred HHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCC
Q 019247 276 VILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 314 (344)
Q Consensus 276 ~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 314 (344)
+..++++|+++.|+.+..|.++.++|+++|++.+.++++
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999987765443
No 23
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.76 E-value=6.7e-15 Score=129.24 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc----cc-----------cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh
Q 019247 52 APITQSVLCYLSLALAYGGILLYRR----QR-----------LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLD 116 (344)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~~~~----~~-----------~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~ 116 (344)
.|.+.+++--.+-.+++....+... ++ .+++..+..+++++....|.++|.++.+.+++..++..
T Consensus 46 ~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~ 125 (345)
T KOG2234|consen 46 LPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTY 125 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhh
Confidence 5788888877777777666665442 11 12234577788888888877999999999999999999
Q ss_pred cCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc---cC-CCCCCchHHHHHHHHHhHHHHHHHHHHHHHh
Q 019247 117 CCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE---MA-GGGGSRPLLGDILVIAGAIFFAMSYVGEEFL 192 (344)
Q Consensus 117 ~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~---~~-~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~ 192 (344)
.+..+-|++++.+++++|++++||.++.+...|+.++..+... .. .....+...|....+.+++..++..++.+|.
T Consensus 126 qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEki 205 (345)
T KOG2234|consen 126 QLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKI 205 (345)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998833321 11 2235667899999999999999999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHHHHHHHHHhhccccccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019247 193 VKKI--DRVEVVCMIGVYGLLVSVVQLSTLELKSLES----VKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLIL 266 (344)
Q Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~ 266 (344)
.|+. +.+.......++|.++.++..+..+++.... ..|+...|...+..+++..+.-.+. |+.+-..=+.
T Consensus 206 LK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~----KyADnIlK~f 281 (345)
T KOG2234|consen 206 LKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVM----KYADNILKGF 281 (345)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchhHHHHH----HHhHHHHHHH
Confidence 9764 5666777778888888866555555443321 2356666776666655444434343 4444444444
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccC
Q 019247 267 SVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 267 ~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
...+..+++.+.++.++|-++|....+|..+++.++.+|...+.+
T Consensus 282 ~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 282 STSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 444577888899999999999999999999999999999955443
No 24
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=131.61 Aligned_cols=259 Identities=22% Similarity=0.257 Sum_probs=196.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhccc-----------------cccchHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 019247 49 GVDAPITQSVLCYLSLALAYGGILLYRRQR-----------------LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISS 111 (344)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----------------~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~ 111 (344)
++.+|+.++..-++.-+++++.+.+.|++. ++-+...++..+++...+..+.|.++.+++++.
T Consensus 35 gfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASs 114 (372)
T KOG3912|consen 35 GFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASS 114 (372)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHH
Confidence 466799999999999988888887765431 122345667789999999999999999999999
Q ss_pred HHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc---cCCCCCCchHHHHHHHHHhHHHHHHHHHH
Q 019247 112 VTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE---MAGGGGSRPLLGDILVIAGAIFFAMSYVG 188 (344)
Q Consensus 112 ~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~---~~~~~~~~~~~G~~l~l~~~~~~a~~~v~ 188 (344)
.+++.....+|+.+++..+++++++.+||.|+....+|+..+...|.. .+.++-++.+.|+++.+.+-+.-|+..++
T Consensus 115 fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~ 194 (372)
T KOG3912|consen 115 FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVC 194 (372)
T ss_pred HHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887543 12223356678999999999999999999
Q ss_pred HHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHhh----cccccc---ccccch------------hhHHHHHHHHHHHHH
Q 019247 189 EEFLVKKI--DRVEVVCMIGVYGLLVSVVQLSTL----ELKSLE---SVKWST------------DIILSFVGNAASSFM 247 (344)
Q Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~ 247 (344)
.+|..++. +|.+...|..++|.++..+..... .+..++ +-.|.+ .....+.+...+-..
T Consensus 195 Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAf 274 (372)
T KOG3912|consen 195 EEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAF 274 (372)
T ss_pred HHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheee
Confidence 99998775 799999999999976663332211 111111 011221 222233333222222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 248 FYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 248 ~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
++..-...-+..++++-...-.+...+-=+++.....|.++..|+.|.++.+.|+++|+-
T Consensus 275 fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 275 FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333445677777777777788877778888899999999999999999999999973
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=1.2e-15 Score=131.99 Aligned_cols=216 Identities=20% Similarity=0.191 Sum_probs=169.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeeccc
Q 019247 79 LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (344)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (344)
.+++..++.+++++....|.+.+.++++.+++..+++.++..++|++++++++|+|++++||+++.+.++|+.+....+.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred ccC-C--C-------CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 019247 159 EMA-G--G-------GGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVVQLSTLELKSLE 226 (344)
Q Consensus 159 ~~~-~--~-------~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (344)
..+ . + ...+...|..+.+.++++.++..++.+|..|+. +.+....+..++|.++.++.....++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 321 1 1 123457899999999999999999999999886 566777777888888886554444443322
Q ss_pred cc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHH
Q 019247 227 SV----KWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAV 298 (344)
Q Consensus 227 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li 298 (344)
+. .++.+.|..+....+ +=.+....+|+.+...=+.......+++.+.++.++|.+++....+|..++
T Consensus 173 ~~g~f~G~~~~~~~~i~~~a~----gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIFLQAI----GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHHHHHHHHH----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 21 234444443333322 222333566888877777777789999999999999999999999998653
No 26
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.71 E-value=5.5e-16 Score=127.32 Aligned_cols=258 Identities=10% Similarity=0.111 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHH
Q 019247 53 PITQSVLCYLSLALAYGGILLYRR--QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVF 130 (344)
Q Consensus 53 p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~ 130 (344)
...++|+....-.++.=.+...++ +..+.+.+.+...+.....+...-+.|++|+|-....+-.+..|+-+++++.++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 445555555555444322222222 233445567777777666667777899999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHH
Q 019247 131 LGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVY 208 (344)
Q Consensus 131 l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~ 208 (344)
.+++.+++++..++++++|+++..+.+....+..+.....|.++.+++-...++....++|..... .....+++..+|
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~Nlw 212 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLW 212 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHH
Confidence 999999999999999999999999875432233445667899999999999999999999886654 456788889999
Q ss_pred HHHHHHHHHHhhcccccc--cc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019247 209 GLLVSVVQLSTLELKSLE--SV-KWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQ 285 (344)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e 285 (344)
+.+.+... ..+.++.+. .. .-++..+.-+.++++++.+++.+.+..+...+|...++...+...++++.++++++.
T Consensus 213 StL~Lg~g-~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~n 291 (337)
T KOG1580|consen 213 STLYLGAG-LLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNN 291 (337)
T ss_pred HHHHhhhh-heehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcC
Confidence 99888533 333232211 11 113344444556667788999999999999999999999999999999999999999
Q ss_pred ccchhhHhHHHHHHHHHHhhhccccC
Q 019247 286 QVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 286 ~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
+++.+||+|..+++.+...-....++
T Consensus 292 pls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 292 PLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred cCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999888765553
No 27
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.68 E-value=2.1e-14 Score=122.63 Aligned_cols=252 Identities=14% Similarity=0.155 Sum_probs=182.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhc-c-cc---ccchHHHH----HHHHHHHHHHHHHHHhhhccchhHHHHhhcCc
Q 019247 49 GVDAPITQSVLCYLSLALAYGGILLYRR-Q-RL---QVSWYWYL----LLGFVDVQGNFLFNKAFQFTSISSVTLLDCCA 119 (344)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~-~~---~~~~~~~~----~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~ 119 (344)
.+.-|..++.++..+-.++.......++ + +. .-.|.-++ ..|+....-..+-+.+++|++.+.+++..++.
T Consensus 41 ~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSs 120 (349)
T KOG1443|consen 41 NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSS 120 (349)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccH
Confidence 4545999999998887776655443322 1 11 22443333 44443333366778999999999999999999
Q ss_pred hhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC---
Q 019247 120 IPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--- 196 (344)
Q Consensus 120 p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~--- 196 (344)
++|+.+++.+|.=||+++.-...+.+..+|+.++...+. +.+..|..+..++.++-++...+.++.+++.
T Consensus 121 i~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~ 193 (349)
T KOG1443|consen 121 ILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA 193 (349)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence 999999999988899999999999999999999998542 3556899999999999999888888887765
Q ss_pred --ChHHHHHHHHHHHHHHHHHHHHhhcccccc-------ccccchhh--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019247 197 --DRVEVVCMIGVYGLLVSVVQLSTLELKSLE-------SVKWSTDI--ILSFVGNAASSFMFYTLVPFVLKLSGATMLI 265 (344)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~ 265 (344)
+|...++...-+....+++..+.+|+.... ..+..... ...+.+.+...+.--.+-+..+.+.+..+.+
T Consensus 194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlS 273 (349)
T KOG1443|consen 194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLS 273 (349)
T ss_pred cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeee
Confidence 467777776666666664556677764322 11111111 1112122222222233334557788899999
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 266 LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 266 ~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
+.+...-+.+.+++.++.+|.++...|.|..+...|+..+..
T Consensus 274 IaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 274 IAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999943
No 28
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.4e-14 Score=120.13 Aligned_cols=288 Identities=16% Similarity=0.142 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hcCCC-hhHHHHHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHHHHH
Q 019247 19 LRTLYLLLLGQLVSFSLALSSFTTAV-IT-DLGVD-APITQSVLCYLSLALAYGGILL-YRRQRLQVSWYWYLLLGFVDV 94 (344)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~-~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~ 94 (344)
+.+|.-.+++....++.....-.... +. .+++. --+.+++.++++-..+.+..+. ++.++...+|+.+..++.+-+
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~ 117 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTV 117 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhh
Confidence 34555555555444444433333332 22 23552 1456666666555443333322 234455668899999999888
Q ss_pred HHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHH
Q 019247 95 QGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDIL 174 (344)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l 174 (344)
+...+-.-++.|.+-..-.++.++..+-+++.+.++-++|.+..++++..+..+|.++....|. +..++.+.+|+.+
T Consensus 118 gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs---~~sPNF~~~Gv~m 194 (367)
T KOG1582|consen 118 GTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS---QTSPNFNLIGVMM 194 (367)
T ss_pred hccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc---ccCCCcceeeHHH
Confidence 7788889999999999999999999999999999999999999999999999999999999874 4455667789999
Q ss_pred HHHhHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHhhcccccccc------ccchhhHHHHHHHHHHHH
Q 019247 175 VIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVVQLSTLELKSLESV------KWSTDIILSFVGNAASSF 246 (344)
Q Consensus 175 ~l~~~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 246 (344)
.-.+-++.|.-.-.+++.++.. +..+..++...+|.++.+.++... ++-++.+ ++....+.. .......
T Consensus 195 IsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT-ge~f~a~~fcaehp~~tyGy~~--~~s~~gy 271 (367)
T KOG1582|consen 195 ISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT-GELFSAWTFCAEHPVRTYGYAF--LFSLAGY 271 (367)
T ss_pred HHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc-ccchhhhHHHHhCcHhHHHHHH--HHHHHhH
Confidence 9999999999888888888765 567888888999999887665543 2222222 222222222 2223344
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 247 MFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 247 ~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
++.......++..|+.++..+......+++++++++|..++|....-|..+++.|+++...+++.+
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 555555577889999999999999999999999999999999999999999999999998876433
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.9e-12 Score=112.25 Aligned_cols=268 Identities=13% Similarity=0.064 Sum_probs=195.6
Q ss_pred HHHHHHhhcCCChhHHH--HHHHHHHHHHHHHHHHHhhc---c-ccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 019247 40 FTTAVITDLGVDAPITQ--SVLCYLSLALAYGGILLYRR---Q-RLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVT 113 (344)
Q Consensus 40 ~~~~~l~~~~~~~p~~~--~~~r~~~~~l~l~~~~~~~~---~-~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 113 (344)
....|........|..+ ...+.+...+.+...-..+- + -.++..++++...++..+..+....+++|.+.+..+
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~t 107 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFT 107 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHH
Confidence 34445554443334444 44777777666655443321 1 223445677778887777788888999999999999
Q ss_pred HhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhh
Q 019247 114 LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLV 193 (344)
Q Consensus 114 ~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~ 193 (344)
++...+|+++++.+..++|.|++...|.++....+|.......|. ..+..|..+++...+.-+.+.+..|+..
T Consensus 108 v~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~-------sf~~~gY~w~~~n~~~~a~~~v~~kk~v 180 (314)
T KOG1444|consen 108 VFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL-------SFNLRGYSWALANCLTTAAFVVYVKKSV 180 (314)
T ss_pred HHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc-------eecchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987766542 3344599999999999999999999987
Q ss_pred cCC--ChHHHHHHHHHHHHHHHHHHHHhhcccc-cc--ccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019247 194 KKI--DRVEVVCMIGVYGLLVSVVQLSTLELKS-LE--SVKWS-TDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILS 267 (344)
Q Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~ 267 (344)
+.. +.+..+++..+...+...+...+++..+ .. ..+|. ...+..+..-++..+.-.++-..+.+..+++..++.
T Consensus 181 d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tiv 260 (314)
T KOG1444|consen 181 DSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIV 260 (314)
T ss_pred ccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeeh
Confidence 654 5678889999998888854444443211 11 01122 222232222223344445555677888889988888
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCC
Q 019247 268 VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 314 (344)
Q Consensus 268 ~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 314 (344)
+..+...+.+-..+++|++.++...+|..+-+.|-++|+..++++++
T Consensus 261 G~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 261 GAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred hhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 88888888888888899999999999999999999999987754433
No 30
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.50 E-value=5.7e-13 Score=99.37 Aligned_cols=125 Identities=26% Similarity=0.263 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcc--c----cccchHHHHHHHHHHHH-HHHHHH
Q 019247 29 QLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--R----LQVSWYWYLLLGFVDVQ-GNFLFN 101 (344)
Q Consensus 29 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~----~~~~~~~~~~~g~~~~~-~~~~~~ 101 (344)
.+++.++|+......|+..++. +|.+.++.|..+..++++.+....++ . .++.| .+++++.+..+ ...++|
T Consensus 8 ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~-lflilSGla~glswl~Yf 85 (140)
T COG2510 8 ALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSW-LFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecccccCccee-hhhhHHHHHHHHHHHHHH
Confidence 3445568888888899999888 99999999999999888888775432 1 23444 44444444444 488899
Q ss_pred HhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 102 KAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 102 ~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
+|++..+++.+.++..++|+++++++++++|||++..+|+|+.+.++|++++..
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999998764
No 31
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.49 E-value=8.7e-13 Score=105.84 Aligned_cols=218 Identities=17% Similarity=0.279 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCch
Q 019247 89 LGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRP 168 (344)
Q Consensus 89 ~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~ 168 (344)
..++....++.+..|++..+++.++.+.+..-.|+.+++++.+|+|+...++++..+++-|++++.+.|. ...+.
T Consensus 59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-----~~a~e 133 (290)
T KOG4314|consen 59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-----EHADE 133 (290)
T ss_pred eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-----hhhhh
Confidence 3455566799999999999999999999999999999999999999999999999999999999998663 34567
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHHHHHhhccccccccc-cchhhHHHHHHHHHH
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKKI---DRVEVVCMIGVYGLLVSVVQLSTLELKSLESVK-WSTDIILSFVGNAAS 244 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 244 (344)
+.|+.++..+++..|+|.++.|+..... |...++.-..++..++...|..+.........+ .....|..+.|...-
T Consensus 134 ~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L 213 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGL 213 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHH
Confidence 8999999999999999999999988765 455555556666666664443322111111111 222334444444344
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccC
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
+..++...+.++....|...++-+.........++.++-+-..+.....|..+|++|.++...++.+
T Consensus 214 ~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 214 SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 5567888888899999999999888888888899988877778889999999999999998875543
No 32
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.48 E-value=3.5e-13 Score=100.47 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhcccc-ccccccchhhHHHHHHHHHHHHHHH
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKS-LESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
...+++++++++++..+..|--.++.||...++...+....++..........+ ..+.+...+.+..+ -++..+.++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflil--SGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLIL--SGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhH--HHHHHHHHH
Confidence 468899999999999999998889899999999999888888843333322212 11233344444444 446688999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 250 TLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 250 ~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
.+|+++++..+++.+..+.-+.|+++++++++++||++|..+++|+.+|.+|.++..+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999988764
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.40 E-value=3.6e-12 Score=99.19 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019247 180 IFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLS 259 (344)
Q Consensus 180 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (344)
++||.+.+..|+..++.|+....++....+.+ ..+.....+..+....++..+.+..+.+. ++...++.++++++++.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGL-LGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhc-cceehHHHHHHHHHHhc
Confidence 46899999999999999999999999999987 43333333333323344445555555555 55788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 260 GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 260 ~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
++..++....++|+++.+++++++||++++.+++|+.+++.|+++..
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864
No 34
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.8e-12 Score=109.41 Aligned_cols=267 Identities=12% Similarity=0.111 Sum_probs=177.9
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHh-hccccccchHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHhhcCchh
Q 019247 44 VITDLGVDAPITQSVLCYLSLALAYGGILLY-RRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSI-SSVTLLDCCAIP 121 (344)
Q Consensus 44 ~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~-~~~~~l~~~~p~ 121 (344)
.+..+.-.+--.+++..+++-++--+++.-. ...+++.+.+.+.+.-......+.+.++++++--+ ..-.++.+..++
T Consensus 24 ~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll 103 (330)
T KOG1583|consen 24 LLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLL 103 (330)
T ss_pred HHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHH
Confidence 4444332233556677766655544333211 11234445566666666555668888899998644 667778889999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccc-cCC-----------CCCCchHHHHHHHHHhHHHHHHHHHHH
Q 019247 122 CAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAG-----------GGGSRPLLGDILVIAGAIFFAMSYVGE 189 (344)
Q Consensus 122 ~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~-----------~~~~~~~~G~~l~l~~~~~~a~~~v~~ 189 (344)
.+++++++++|+|.+.+|+.++++..+|+++....... .+. +.......|+.+...+-+.-|.-.+++
T Consensus 104 ~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyq 183 (330)
T KOG1583|consen 104 ANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQ 183 (330)
T ss_pred HHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876432 111 111234578888888888889888888
Q ss_pred HHhhcCC--ChHHHHHHHHHHHHHHHHHHHH--------hhcccc--ccccc-cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 190 EFLVKKI--DRVEVVCMIGVYGLLVSVVQLS--------TLELKS--LESVK-WSTDIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
+...+++ ++.+.+++..+.+.+..+...- .+..+. .+... .-+..|..+...++..-..--..+..-
T Consensus 184 E~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~ 263 (330)
T KOG1583|consen 184 ETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILT 263 (330)
T ss_pred HHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8887775 8899999999988887743210 010110 11111 112233333333232222111222223
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
...++.++++...+...++.+++++.|+.++++..|+|..++..|.+++.....
T Consensus 264 te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 264 TETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred ceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566677778899999999999999999999999999999999999985443
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.37 E-value=2.3e-10 Score=98.89 Aligned_cols=245 Identities=13% Similarity=0.109 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccc---cchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh-cCchhHHHHHH
Q 019247 52 APITQSVLCYLSLALAYGGILLYRRQRLQ---VSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLD-CCAIPCAIVFT 127 (344)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~lla 127 (344)
+|..+.+.-...+.++-+.....++.... +.+...++-|++...++..++.|+++..++.+.++. ...-+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 46666655554454444444444433332 455666778888888899999999999999999885 46666699999
Q ss_pred HHHhcccchHHHHH----HHHHHhhhceeeeecccccCCC-CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHH
Q 019247 128 WVFLGTRYSVWQLF----GASLCVLGLGLMLLSDAEMAGG-GGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVV 202 (344)
Q Consensus 128 ~l~l~e~~~~~~~~----~~~l~~~Gv~l~~~~~~~~~~~-~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~ 202 (344)
.++++|.-+..+++ ++++.++|+.+....+..++.. ...+...|+...+.+.+.|..|.+.-|.. +.|+.+..
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~ 168 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAF 168 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhH
Confidence 99999988877654 7788899999998877543322 23456689999999999999999997753 45676666
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 203 CMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFC 282 (344)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~ 282 (344)
.-+.+ |.++..+.+......... +...+.-++.- +.-.+++.++..+.+..+.+..=.+.-+.++++.+.+.++
T Consensus 169 lPqai-Gm~i~a~i~~~~~~~~~~----~k~~~~nil~G-~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~i 242 (269)
T PF06800_consen 169 LPQAI-GMLIGAFIFNLFSKKPFF----EKKSWKNILTG-LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFI 242 (269)
T ss_pred HHHHH-HHHHHHHHHhhccccccc----ccchHHhhHHH-HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheE
Confidence 65433 333332333332221111 11112222122 3345667777788889998888888889999999999999
Q ss_pred hccccchh----hHhHHHHHHHHHHh
Q 019247 283 YHQQVNWT----YYLAFAAVLIGLII 304 (344)
Q Consensus 283 ~~e~~~~~----~~~G~~li~~g~~l 304 (344)
+||+=+.+ .++|+.+++.|.++
T Consensus 243 l~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 243 LKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred EEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99998865 45688888887664
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.31 E-value=8.9e-11 Score=96.17 Aligned_cols=261 Identities=11% Similarity=0.068 Sum_probs=190.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHH
Q 019247 49 GVDAPITQSVLCYLSLALAYGGILLYRRQR-LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFT 127 (344)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla 127 (344)
++.--+.+.+.+.++..+-++.+-+.+-.. ..++.+.++..+++.+...+..-.+++|.+...++++.+++.+.++...
T Consensus 33 gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 33 GFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 554456666777666555554443322111 1334455566777766667777899999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC--ChHHHHHHH
Q 019247 128 WVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMI 205 (344)
Q Consensus 128 ~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~--~~~~~~~~~ 205 (344)
.+++|.|.+..+..+..+.++.-....+.|...........+.|.+++..-++.-+.+....|+..+-. .....++|.
T Consensus 113 vl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYn 192 (309)
T COG5070 113 VLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYN 192 (309)
T ss_pred HHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHh
Confidence 999999999999999999988887777765321111112345799999999999999999998877654 467889999
Q ss_pred HHHHHHHHHHHHHhhccccccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019247 206 GVYGLLVSVVQLSTLELKSLES----VKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIF 281 (344)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~ 281 (344)
.+.+.+++...-..+|..+... .+.+...+..+-++ +++.--++-.+.++..+++..++.+.++..-..+.|.+
T Consensus 193 NllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl--~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlv 270 (309)
T COG5070 193 NLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL--CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLV 270 (309)
T ss_pred hhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH--HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhh
Confidence 9999999865555555433221 12223233333333 33333344457789999999999999999999999999
Q ss_pred HhccccchhhHhHHHHHHHHHHhhhccccC
Q 019247 282 CYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 282 ~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
+++|+.+...+..+.+-..+.++|...+++
T Consensus 271 ffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 271 FFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888776543
No 37
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.6e-13 Score=112.24 Aligned_cols=258 Identities=15% Similarity=0.149 Sum_probs=191.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcc--------cccc---chHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcC
Q 019247 50 VDAPITQSVLCYLSLALAYGGILLYRRQ--------RLQV---SWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCC 118 (344)
Q Consensus 50 ~~~p~~~~~~r~~~~~l~l~~~~~~~~~--------~~~~---~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~ 118 (344)
...|..+++...++...+...+.....+ +.+- ..+...-+.++.+....+-++.++|++++.+.+=.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 3459999999998888777666542211 1111 1234445555555556667799999999999999999
Q ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC--
Q 019247 119 AIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI-- 196 (344)
Q Consensus 119 ~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~-- 196 (344)
..+|+.+++++++|+|-+..-..+..+.+.|-.+=.-.+ +..+.-.+.|++++..+.++-|+..+..||.....
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE----~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~ 213 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE----GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD 213 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheeccccc----cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence 999999999999999999999999999999987644432 23345567999999999999999999999876654
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcccc--ccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019247 197 DRVEVVCMIGVYGLLVSVVQLSTLELKS--LES--VKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSD 272 (344)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p 272 (344)
.-+.++++....+.++. +|.....++- ... ..|....|......+++.+...+...+=+|..+|.+..+.....-
T Consensus 214 ~iw~lt~ynnv~a~lLf-lpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka 292 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLF-LPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKA 292 (347)
T ss_pred eehhhHHHHHHHHHHHH-HHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHH
Confidence 35789999999998888 5766655421 111 223445555443333333332323223356778888888888888
Q ss_pred HHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 273 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 273 ~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
....+++..+++|.-+..-|.|-.+++.|...|++.++.+
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e 332 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE 332 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence 9999999999999999999999999999999999876543
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.25 E-value=1.9e-11 Score=95.03 Aligned_cols=118 Identities=23% Similarity=0.359 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc-----cccccchHHHHHHHHHH-HHHHHHHHHhhhccc
Q 019247 35 LALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR-----QRLQVSWYWYLLLGFVD-VQGNFLFNKAFQFTS 108 (344)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~ 108 (344)
+|+......|...++. +|...+++|+..+.+ ++++....+ +...+++......+.+. ...+.+++.++++.+
T Consensus 2 ~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 4666666666666566 999999999999997 444443322 22234556667777774 455889999999999
Q ss_pred hhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeee
Q 019247 109 ISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (344)
Q Consensus 109 ~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 154 (344)
++.++++.++.|+++.+++++++||++++++++|+.+++.|+.++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997653
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.23 E-value=5e-11 Score=91.14 Aligned_cols=100 Identities=24% Similarity=0.404 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHhhccc-------cccchHHHHHHHHHHH-HHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHH
Q 019247 58 VLCYLSLALAYGGILLYRRQR-------LQVSWYWYLLLGFVDV-QGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWV 129 (344)
Q Consensus 58 ~~r~~~~~l~l~~~~~~~~~~-------~~~~~~~~~~~g~~~~-~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l 129 (344)
.+|+..+.+++..+...+++. .++++.+....|.++. ..+.+++.|+++.+ +.++++.+++|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 578888888888777654321 2344556666677776 55888999999999 58889999999999999999
Q ss_pred HhcccchHHHHHHHHHHhhhceeeeeccc
Q 019247 130 FLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (344)
Q Consensus 130 ~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (344)
++|||++++++.++.++++|+.++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998764
No 40
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.23 E-value=4.8e-10 Score=90.60 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=111.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcC-----C--ChHHHHHHHHHHHHHHHHHHHHhhcccccccc----cc-----chhh
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLVKK-----I--DRVEVVCMIGVYGLLVSVVQLSTLELKSLESV----KW-----STDI 234 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~ 234 (344)
|..+++.+.++.|++.++.|+..++ . ++.+...+....+.++..+.....|....... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6788999999999999999998766 2 78999999999999999666666665432111 11 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 235 ILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
+..+...++.....+...+..+++.+|...++....+.+..++.+++++||+++..+++|.++.+.|.++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3344444455667788888999999999999999999999999999999999999999999999999999864
No 41
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.14 E-value=2e-09 Score=96.03 Aligned_cols=212 Identities=13% Similarity=0.191 Sum_probs=124.4
Q ss_pred HHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCCCCCchH-----
Q 019247 95 QGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPL----- 169 (344)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~----- 169 (344)
.+..+.+.|+.+.|++..+++.....++.++++..++|||++++++.|+.++++|..++.......++..+.+..
T Consensus 62 ~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~ 141 (300)
T PF05653_consen 62 LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLS 141 (300)
T ss_pred cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhc
Confidence 347788899999999999999999999999999999999999999999999999998877654221111111111
Q ss_pred -HHH-HH-HHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH----HHHH---hhccccccccccchhhHHHHH
Q 019247 170 -LGD-IL-VIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSV----VQLS---TLELKSLESVKWSTDIILSFV 239 (344)
Q Consensus 170 -~G~-~l-~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~ 239 (344)
.+. .+ .+...+...+.....+|..++ +..........+|..-.. +... ..++++. . .++..|..+.
T Consensus 142 ~~~fl~y~~~~~~~~~~L~~~~~~r~g~~-~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~--f-~~~~~y~l~~ 217 (300)
T PF05653_consen 142 QPGFLVYFILVLVLILILIFFIKPRYGRR-NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQ--F-TYPLTYLLLL 217 (300)
T ss_pred CcceehhHHHHHHHHHHHHHhhcchhccc-ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchh--h-hhhHHHHHHH
Confidence 010 11 111111222222222222221 221111111222221110 0011 1112111 1 1333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhccccc--h----hhHhHHHHHHHHHHhhhcccc
Q 019247 240 GNAASSFMFYTLVPFVLKLSGATMLILSVL-TSDMWAVILRIFCYHQQVN--W----TYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~~~~e~~~--~----~~~~G~~li~~g~~l~~~~~~ 310 (344)
....+........++++++.++..+..+.+ .-...+++-+.++++|.-+ . ....|+.+++.|+++.+..++
T Consensus 218 ~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 218 VLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 554555566666678999999877765554 4455677777888888654 3 467888999999999875443
No 42
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.13 E-value=3.1e-09 Score=91.42 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=114.5
Q ss_pred HHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhce--------------------eeeecccccCCCCCCchHHH
Q 019247 112 VTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLG--------------------LMLLSDAEMAGGGGSRPLLG 171 (344)
Q Consensus 112 ~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~--------------------l~~~~~~~~~~~~~~~~~~G 171 (344)
.....+..++++++..+.+.+||++..++++.++...|+. .....+...+.....+...|
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g 86 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVG 86 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHH
Confidence 3444455555555555555555555555555555555554 33221110001122356788
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCChH--HHHHHHHHHHHHHHHHHHHhhcc-cccccc----ccchhhHHHHHHHHHH
Q 019247 172 DILVIAGAIFFAMSYVGEEFLVKKIDRV--EVVCMIGVYGLLVSVVQLSTLEL-KSLESV----KWSTDIILSFVGNAAS 244 (344)
Q Consensus 172 ~~l~l~~~~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 244 (344)
....+.+.++.++..++.++..++.+.. .......+++.+... ....... ...... .++...+... +.
T Consensus 87 ~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 161 (222)
T TIGR00803 87 LSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SVLLWSDGTLISNFGFFIGYPTAVWIVG----LL 161 (222)
T ss_pred HHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HHHhhcccchhhccCcccCCchHHHHHH----HH
Confidence 8888889999999999999987654321 112222233333221 1111111 111111 1122222221 33
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhh
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIY 305 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~ 305 (344)
......+....+++.++...+....++++++.+++++++||+++..+++|..+++.|+.+|
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 4455667778899999999999999999999999999999999999999999999998764
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.06 E-value=8.8e-09 Score=92.60 Aligned_cols=137 Identities=11% Similarity=0.136 Sum_probs=106.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccc--cccccccchhhHHH-HHHHHH
Q 019247 167 RPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELK--SLESVKWSTDIILS-FVGNAA 243 (344)
Q Consensus 167 ~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~ 243 (344)
+...|+.+.+++++.|+...+..|.. .+.++.+..+++.+++.++.. +.....++ .......+...+.. ..+. +
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMV-VLMSICRQWSYLKTLIQTPQKIFMLAVSA-V 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH-HHHHHHccHHHHHHHHcCHHHHHHHHHHH-H
Confidence 45689999999999999999999764 567999999999999988773 33322211 11000001112122 2333 5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 244 SSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 244 ~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
+.+..+.++++++++.++..+++..++.|++..+++++++||+++.++++|.++.++|+++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999999999875
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.05 E-value=8.7e-09 Score=91.97 Aligned_cols=131 Identities=9% Similarity=0.039 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhc--cccccccccchhhHHHHHHHHHHHHHHH
Q 019247 172 DILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLE--LKSLESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 172 ~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
..+.+.+++++|..++..|+..++.++.+ .+....+.+.. .|..... .......+... +......+.+....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFL--WWALLAHSVLL-TPYGLWYLAQVGWSRLPATF--WLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHH--HHHHHHHHHHH-HHHHHHhcccCCCCCcchhh--HHHHHHHHHHHHHHH
Confidence 46789999999999999998877655533 44444554444 3444332 12222211122 222222335566788
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 250 TLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 250 ~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
.++.+++++.++..++.+.++.|+++.+++++++||+++.++++|..+++.|+++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999998764
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.02 E-value=1.8e-08 Score=88.67 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=103.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhcc-c----cccccccchhhHHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLEL-K----SLESVKWSTDIILSFVGNAAS 244 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 244 (344)
.|..+.++++++|+...+..|. ..+.|+.+..++.++++.++..+....... . .....+... .+......++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRP-LILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccch-HHHHHHHHHHH
Confidence 3789999999999999999997 456899999999999998776332222221 1 111111111 12222222233
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
....+.+++.++++.++..++.+.++.|+++++++++++||+++.++++|..+.++|+++...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999987743
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.02 E-value=1.1e-08 Score=90.25 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcccc---ccchHHHHHHHHHHHH-HH
Q 019247 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL---QVSWYWYLLLGFVDVQ-GN 97 (344)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~-~~ 97 (344)
.++...+.+.+++........++..++...++.....+++..+.+++.++....++.. .+++...+..+.++.. +.
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4566666655555555555555555432223555666788888888888776543222 2233445666766544 48
Q ss_pred HHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhce
Q 019247 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLG 151 (344)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~ 151 (344)
.+++.++++.+++.++.+.++.|+++++++++++||+++..+++|..+.+.|+.
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999999999999999999873
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.93 E-value=9.1e-07 Score=79.78 Aligned_cols=227 Identities=11% Similarity=0.093 Sum_probs=139.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccc-------hHHHHHHHHHHhhhce
Q 019247 80 QVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRY-------SVWQLFGASLCVLGLG 151 (344)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~-------~~~~~~~~~l~~~Gv~ 151 (344)
...+...++.|.+...++.+++.++++...+.+..+ ..+.-+...++..++++|-. .....+|++++++|++
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 344556667778888889999999999999988777 66888889999998988644 2346788999999999
Q ss_pred eeee----cccccCC--CCCCchHHHHHHHHHhHHHHHHHH-------HHHHHhhc-CCChHHHHHHHH---HHHHHHHH
Q 019247 152 LMLL----SDAEMAG--GGGSRPLLGDILVIAGAIFFAMSY-------VGEEFLVK-KIDRVEVVCMIG---VYGLLVSV 214 (344)
Q Consensus 152 l~~~----~~~~~~~--~~~~~~~~G~~l~l~~~~~~a~~~-------v~~~~~~~-~~~~~~~~~~~~---~~~~~~~~ 214 (344)
+... .+...+. +.+.+...|+.+++++.+.++.|+ ...+.... +.|+......+. +++..+.-
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n 229 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITN 229 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9988 4321111 233566799999999999999999 44433211 223332222222 23333332
Q ss_pred HHHHhh---ccccc---cccc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-H---HHHHHHHHHHHHH
Q 019247 215 VQLSTL---ELKSL---ESVK------WSTDIILSFVGNAASSFMFYTLVPFVLKLSGATML-I---LSVLTSDMWAVIL 278 (344)
Q Consensus 215 ~~~~~~---~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~-~---~~~~~~p~~~~i~ 278 (344)
..+... ..+.. .+.. +.......+.| +.-..++..+..+-...+.... . +.+.+..+++.++
T Consensus 230 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G--~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 230 LGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAG--VMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 222221 11111 1111 11111112222 2223444444444454432222 1 3335677899999
Q ss_pred HHHHhccccc------hhhHhHHHHHHHHHHhhhccc
Q 019247 279 RIFCYHQQVN------WTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 279 ~~~~~~e~~~------~~~~~G~~li~~g~~l~~~~~ 309 (344)
+.+ +||.=+ ...++|++++++|..+....+
T Consensus 308 Gi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 308 GLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred hhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 995 899866 567999999999999887643
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.88 E-value=1.4e-07 Score=73.21 Aligned_cols=122 Identities=7% Similarity=0.060 Sum_probs=89.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
.|.++.+.+.++-+...++.|+-.++.+..+.... . . . . +. ... ++ ....+.++ ++.+.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~-~--~-~-~~-~~~----------~p-~~~i~lgl-~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F-I--A-A-LL-AFG----------LA-LRAVLLGL-AGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H-H--H-H-HH-HHh----------cc-HHHHHHHH-HHHHHHH
Confidence 47788999999999999999998876543332211 0 0 0 0 00 000 11 11233344 5677889
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 250 TLVPFVLKLSGATMLILSVLTSDMWAVILRIF--CYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 250 ~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.+|.+++++.+...+..+....++...+.++. ++||++|+.+++|.++|++|+++.++.++
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999888888878777774 89999999999999999999999976444
No 49
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=5.8e-08 Score=84.50 Aligned_cols=219 Identities=12% Similarity=0.137 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecccccCCC
Q 019247 85 WYLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGG 163 (344)
Q Consensus 85 ~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 163 (344)
+.++.|++-... ....|.|+.|.|++..+++-+++.+..++++..++|||++....+|++++++|-.+++......++-
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 344456554444 8888999999999999999999999999999999999999999999999999999988865321111
Q ss_pred CC----------CchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH----HHHHH---hhc-cccc
Q 019247 164 GG----------SRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVS----VVQLS---TLE-LKSL 225 (344)
Q Consensus 164 ~~----------~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~-~~~~ 225 (344)
.+ ..+..-..+. .....+-....|+.-...+.........+.|.+-. .+... .+. ..+.
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~i---il~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql 221 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIII---ILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQL 221 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHH---HHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccc
Confidence 11 1111111111 11111111222211112244555554444443222 01111 111 1111
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhccccc------hhhHhHHHHH
Q 019247 226 ESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVL-TSDMWAVILRIFCYHQQVN------WTYYLAFAAV 298 (344)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~~~~e~~~------~~~~~G~~li 298 (344)
. .+..|..+.....+......-.+++++..++..++.+.+ .-..++++-+.++|+|.-. ..+..|+..+
T Consensus 222 ~----~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti 297 (335)
T KOG2922|consen 222 F----YPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTI 297 (335)
T ss_pred c----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHh
Confidence 1 223444444443444444455578889888888887665 5566778888899988754 2578899999
Q ss_pred HHHHHhhhcccc
Q 019247 299 LIGLIIYSTTAK 310 (344)
Q Consensus 299 ~~g~~l~~~~~~ 310 (344)
+.|+.+....+.
T Consensus 298 ~~G~flL~~~kd 309 (335)
T KOG2922|consen 298 FLGIFLLHRTKD 309 (335)
T ss_pred hheeeEeeeecc
Confidence 999999865443
No 50
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.76 E-value=3.8e-07 Score=83.72 Aligned_cols=136 Identities=12% Similarity=0.008 Sum_probs=106.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHHhh-cc-ccccccccchhhHHHHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKI-DRVEVVCMIGVYGLLVSVVQLSTL-EL-KSLESVKWSTDIILSFVGNAASSF 246 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
.-.+.+++.-++|+.+.++.|...+.. ++....++...++.+++. ++... +. ...+..+|..+....+.+. ++ .
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll-~~~~~~~~~~~~~~~~~~~~~~l~l~g~-~g-~ 89 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLL-PSLFFTNRSRSLPPLSVSILSKIGLLGF-LG-S 89 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHH-HHHHHHHHhcccCcchHHHHHHHHHHHH-HH-H
Confidence 345667888899999999999998765 899999999999988873 44432 22 1222223444444555554 32 4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------hccccchhhHhHHHHHHHHHHhhhcc
Q 019247 247 MFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFC------YHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 247 ~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~------~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
..+.+++.++++.++..++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+....
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 566788899999999999999999999999999999 69999999999999999999987753
No 51
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.64 E-value=7.9e-07 Score=79.86 Aligned_cols=132 Identities=14% Similarity=-0.030 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccc---hHHHHHHHHHHHHH-HH
Q 019247 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVS---WYWYLLLGFVDVQG-NF 98 (344)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~g~~~~~~-~~ 98 (344)
.+.+++...+++........++..+ .. +|...... ..++.+++.++..........+ +...+.+|++.... +.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~-~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGA-EH-GPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cC-CchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666666555444444444445533 33 55555444 4555666666655432211112 22335667666555 67
Q ss_pred HHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 99 LFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
++++++++.+++.++++.+++|+++.++++++++|+++..+++|..+.+.|++......
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999998876543
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.63 E-value=2.3e-06 Score=76.87 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=100.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 019247 172 DILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTL 251 (344)
Q Consensus 172 ~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (344)
.+..++-.+.|+...+..|...++.||....++...++.++.. +....+.... .+...+......+. +....++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll-~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLL-AFLLLRGHPL--PTLRQWLNAALIGL-LLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-HHHHHhCCCC--CcHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556777899999999999888888999999999999988874 4443333221 11223333333444 323345667
Q ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 252 VPFVL-KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 252 ~~~~l-~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
++.+. +..++..++++..+.|+++.+++.+ +||+++.++++|..+.++|+.+....
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 77777 8889999999999999999999985 79999999999999999999888643
No 53
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.61 E-value=1.1e-06 Score=67.00 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 231 STDIILSFVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
..+.+....+. ++....+.++.++.++.++ .+..+..+.|+++.+++.++++|+++..+++|.+++.+|+++....+.
T Consensus 32 ~~~~~~~~~g~-~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 32 KPWLWLILAGL-LGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred CcHHHHHHHHH-HHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 33344444444 4445779999999999995 777889999999999999999999999999999999999999987543
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.60 E-value=1.3e-06 Score=75.31 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhcc-ccccccccchhhHHHHHHHHHHHH
Q 019247 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLEL-KSLESVKWSTDIILSFVGNAASSF 246 (344)
Q Consensus 168 ~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
...|+++++.+-+.|+..-.+.|. .+..++.+...+..+++.++..+......+ .+..+...++..+..+...++-..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 346999999999999999999865 566799999999999999999554443322 222222223334444433434455
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 247 MFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 247 ~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
.-+..+.++.++.....++.-.+++|++.+++|.++++|+++..|++...+..+|+.......
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 667888899999999999999999999999999999999999999999999999999887543
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.58 E-value=2e-06 Score=77.30 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=96.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
.+.++++.++++|+...+..|...+..+|....++....+.++.. +... .+...+ ..+... ..+. +.....+
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~-~~~~--~~~~~~---~~~~~~-~~~~-l~~~~~~ 75 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLL-LTVG--FPRLRQ---FPKRYL-LAGG-LLFVSYE 75 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHH-HHcc--cccccc---ccHHHH-HHHh-HHHHHHH
Confidence 457789999999999999999998889999999999988887773 3321 111111 111111 1122 2233444
Q ss_pred HHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 250 TLVPFVLK----LSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 250 ~~~~~~l~----~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
.+.+.+.+ ..++..++.+..+.|+++.++++++++|+++..+++|+.+.++|+++....
T Consensus 76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 44444544 456777889999999999999999999999999999999999999888743
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.54 E-value=5.8e-06 Score=74.50 Aligned_cols=125 Identities=10% Similarity=0.191 Sum_probs=93.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 019247 173 ILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLV 252 (344)
Q Consensus 173 ~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (344)
.+.++++++|+...+..|...++.||....++...++.+... +.... .+.++ ......+. ......+.++
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~-~~~~~-----~~~~~---~~~~~~g~-~~~~~~~~~~ 76 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAI-FFVAR-----PKVPL---NLLLGYGL-TISFGQFAFL 76 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHhcC-----CCCch---HHHHHHHH-HHHHHHHHHH
Confidence 567889999999999999988888999999999988766552 32211 11111 11111222 1123334455
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 253 PFVLKL-SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 253 ~~~l~~-~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
+.+.++ .++..++++..+.|+++.++++++++|+++.++++|.++.++|+.+...
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 567776 5778888889999999999999999999999999999999999988874
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.53 E-value=7.5e-06 Score=75.32 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=97.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKKID-RVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFM 247 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (344)
..-..+.+.--.+...++...|...+..+ |..+..++.+++.++.. ..+.......++.+.....+..++..+++...
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFAL-LYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH-HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33344444444555667788888888888 99999999999987663 33332211111121011122222233333344
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 248 FYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 248 ~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
.+...+.+++..+++.++++..++|++++++++++++|+++.+++.|.+++++|+.+...
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 466667889999999999999999999999999999999999999999999999998864
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.49 E-value=8.7e-06 Score=61.62 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
.+.+.++.++..++++.+..++-.+..+.++.+.+++++++||++++.+++|.+++++|+++...
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44667899999999999999999999999999999999999999999999999999999988764
No 59
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.43 E-value=3.3e-08 Score=82.64 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHHHh
Q 019247 26 LLGQLVSFSLALS-SFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL-QVSWYWYLLLGFVDVQGNFLFNKA 103 (344)
Q Consensus 26 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~a 103 (344)
+++++= .+.||+ .....|... .|.+++....+.+.++...+.+...+.. .+.+..-++-|.+...++...+.|
T Consensus 5 liaL~P-~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka 79 (288)
T COG4975 5 LIALLP-ALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA 79 (288)
T ss_pred HHHHHH-HHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence 344433 345555 343334442 6777776665555555444444322222 223334455666677778899999
Q ss_pred hhccchhHHHHhhc-CchhHHHHHHHHHhcccchHHHH----HHHHHHhhhceeeeecccc-cCCCCCCchHHHHHHHHH
Q 019247 104 FQFTSISSVTLLDC-CAIPCAIVFTWVFLGTRYSVWQL----FGASLCVLGLGLMLLSDAE-MAGGGGSRPLLGDILVIA 177 (344)
Q Consensus 104 l~~~~~~~~~~l~~-~~p~~~~lla~l~l~e~~~~~~~----~~~~l~~~Gv~l~~~~~~~-~~~~~~~~~~~G~~l~l~ 177 (344)
+++..++.+.++.. ..-+-+.+++.+.++|..+..+. +++++.+.|+.+-...+.+ ++.+..++.-.|+...+.
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i 159 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI 159 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence 99999999999855 45555889999999999888764 5677888999999888753 233344556689999999
Q ss_pred hHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 178 GAIFFAMSYVGEEFLVKKI-DRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 178 ~~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
|.+.|-.|.++.+...-+. +..--.+ .|.++.++.+..... + ...+-..|.-.+ .++.-..++..+..+.
T Consensus 160 St~GYv~yvvl~~~f~v~g~saiLPqA----iGMv~~ali~~~~~~-~---~~~~K~t~~nii-~G~~Wa~GNl~ml~a~ 230 (288)
T COG4975 160 STLGYVGYVVLFQLFDVDGLSAILPQA----IGMVIGALILGFFKM-E---KRFNKYTWLNII-PGLIWAIGNLFMLLAA 230 (288)
T ss_pred eccceeeeEeeeccccccchhhhhHHH----HHHHHHHHHHhhccc-c---cchHHHHHHHHh-hHHHHHhhHHHHHHhh
Confidence 9999999999987654221 3333333 333333223222211 1 111111222111 1122334556655666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhh----HhHHHHHHHHHHhhhc
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTY----YLAFAAVLIGLIIYST 307 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~----~~G~~li~~g~~l~~~ 307 (344)
+..+.++.=.+.-+..+++.+=++++++|+=|..+ ++|..+++.|..+...
T Consensus 231 ~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 231 QKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 66664444344446678888999999999998865 4677788877776543
No 60
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.39 E-value=1.8e-05 Score=71.35 Aligned_cols=122 Identities=12% Similarity=-0.004 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019247 182 FAMSYVGEEFLVKK-IDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVLKLSG 260 (344)
Q Consensus 182 ~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (344)
...++++.|...++ ..|....+++...+.+... +..........+.+.+++......+. .....+.+.+.++++.+
T Consensus 14 ~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 14 NVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCL-LSWSSGLPKRLKISSALLKLLLPVAI--VHTIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH-HHHHhCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 33455677888876 4688888888888776653 33211111112233334444444444 34666788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 261 ATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 261 a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
+...+++..+.|+++.++++++++|+++..++.|..++++|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998764
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.39 E-value=4e-06 Score=63.46 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=57.0
Q ss_pred HHHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 92 VDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 92 ~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
+..+. ..+...+++..|.+.+..+.++.++++.+++++++|||++.+|++|+.+.+.|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44444 66778999999999999999999999999999999999999999999999999987654
No 62
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.37 E-value=1.7e-05 Score=63.77 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHHHhhccc----------------cccch
Q 019247 25 LLLGQLVSFSLALSSFTTAVITDL-----GVDAPITQSVLCYLSLALAYGGILLYRRQR----------------LQVSW 83 (344)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~----------------~~~~~ 83 (344)
.+++....++...-+...++...+ ...+|..+.......+.+.+.+.....++. ....+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 344554555555555566665555 344799999999999998888876642211 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 84 YWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
...+..|+++...+...+..++++++...+++.....+.+.++++++++|+++..+++|+.+++.|+.+-
T Consensus 82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 3444555666666999999999999999999999999999999999999999999999999999998764
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.26 E-value=8.8e-06 Score=72.88 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH---H-HHHHHHHHHHHhhccc-cccchHHHHHHHHHHHHH
Q 019247 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCY---L-SLALAYGGILLYRRQR-LQVSWYWYLLLGFVDVQG 96 (344)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~---~-~~~l~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 96 (344)
.++++.+++.+++.+......+.. +. +|.+.++... . .+.++..++ .+.++ ..+..+..++.|++...+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CC-CcceehhHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHHHHH
Confidence 568999988887776665555543 23 6676644443 3 333333333 11111 222334455577776555
Q ss_pred HHHHHHhhh-ccchhHHHHhhcCchhHHHHHHHHHhcccchHHHH----HHHHHHhhhceeeee
Q 019247 97 NFLFNKAFQ-FTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQL----FGASLCVLGLGLMLL 155 (344)
Q Consensus 97 ~~~~~~al~-~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~----~~~~l~~~Gv~l~~~ 155 (344)
+.+++.+.+ +.+++.+.++.+..|+...+++.+++||+.+++++ +|.++.+.|+.+...
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 888889999 99999999999999999999999999999999999 999999999887643
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.23 E-value=0.00012 Score=65.33 Aligned_cols=141 Identities=14% Similarity=0.203 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHH
Q 019247 168 PLLGDILVIAGAIFFAMSYVGEEFLVKK-IDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSF 246 (344)
Q Consensus 168 ~~~G~~l~l~~~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
...+....+..++.|+......|+..++ .+.....+.....+.+.. .+....+........ ....+..+.+. +...
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 81 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLL-LPLLLLEPRGLRPAL-RPWLLLLLLAL-LGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHH-HHHHHhhcccccccc-cchHHHHHHHH-HHHH
Confidence 3467788888889999999999888776 345555555666666553 333332211111111 11222333333 6677
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHhccccchhhHhHHHHHHHHHHhhhccccC
Q 019247 247 MFYTLVPFVLKLSGATMLILSVLTSDMWAVILRI-FCYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 247 ~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~-~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
..+.++..++++.++..+..+..+.|++..+++. ++++|+++..++.|..+.+.|+++.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 8888999999999999999999999999999997 6679999999999999999999999875543
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.04 E-value=8e-05 Score=56.76 Aligned_cols=68 Identities=6% Similarity=0.205 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~-~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
++...++.++..++++.+...+=.+ .-+..+...+++++++||++++.+++|..+|++|++..+...+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 4455678888889988885554433 3467788899999999999999999999999999999876553
No 66
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.00 E-value=0.00036 Score=63.14 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=89.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcC-C-ChHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchhhHHHHHHHHHH
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKK-I-DRVEVVCMIGVYGLLVSVVQLSTLELKS--LESVKWSTDIILSFVGNAAS 244 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 244 (344)
+.+.+++-.-+++-+..++.+....++ . -|....++..+.-.++.. +........ ..... ...|.-++..++.
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~-~~~~~r~~~~~~~~~~--~~~~w~y~lla~~ 88 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYT-PILLYRRGFKKWLKVL--KRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHh-hhhhhccccccchhhc--chhHHHHHHHHHH
Confidence 334444444444444444444444333 2 255555554444444332 333222211 11111 1122222233456
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
-..++.++..+.++.+.+.+.++.....++++++++++++|+.++.+++|+.+.++|+.+......
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 778899999999999999999999999999999999999999999999999999999998876543
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.89 E-value=4.2e-05 Score=59.40 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=61.3
Q ss_pred HHHHHHHHHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHH--HhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 86 YLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWV--FLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 86 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l--~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
++..|+...+. ..++..+++..+.+.+..+.+..+..+.+.++. ++||+++..+++|+.+.++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 55666665555 778889999999999999998888888888874 8999999999999999999999987643
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.85 E-value=0.00096 Score=60.21 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCC--C--hHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 181 FFAMSYVGEEFLVKKI--D--RVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 181 ~~a~~~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
++..+.+.+++..++. + +..+++.+.....+...+.......+..+..++.. +...++....+..+-+.++
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKK-----YAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3445667888887664 3 55667777777776663332222212222222111 1222344556677788999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCC
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 314 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 314 (344)
++.+.....+.-...|+..++++++++|++.+..++.+..++.+|+++....+.++.+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 9999999999999999999999999999999999999999999999999876654433
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.78 E-value=0.00042 Score=52.10 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~-~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++.+.++.++..++++.+...+=.. .-+..+...++++++|||++++.+++|..+|++|++..+...
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455567777788888775544333 336778889999999999999999999999999999997654
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.69 E-value=0.003 Score=49.75 Aligned_cols=131 Identities=14% Similarity=0.174 Sum_probs=89.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLVKKI-DRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
..++++.+..+-++......+..++. |+....+.....|.++..+.....+..+....+ ...|..+.+-.+ .....
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~--~~p~w~~lGG~l-G~~~V 78 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLS--SVPWWAYLGGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc--cCChHHhccHHH-HHHHH
Confidence 35678888888899888888887776 499999999999999886555555443332222 222222223313 33445
Q ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHH----HhccccchhhHhHHHHHHHHHHh
Q 019247 250 TLVPFVLKLSGATMLILSVL-TSDMWAVILRIF----CYHQQVNWTYYLAFAAVLIGLII 304 (344)
Q Consensus 250 ~~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~----~~~e~~~~~~~~G~~li~~g~~l 304 (344)
.+.....++.++........ -+.+.+.+++.+ .-++++++.+.+|..++++|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55556778888776665444 456667777775 33577899999999999999864
No 71
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.69 E-value=0.00034 Score=62.74 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 019247 166 SRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASS 245 (344)
Q Consensus 166 ~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (344)
.+..+|+.+++.++++.+....++|+...+.+....-. .....+.-.+..+|.... ..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------------------~~~~~~~l~~~~W~~G~~----~~ 60 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------------------GSGGRSYLRRPLWWIGLL----LM 60 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------------cchhhHHHhhHHHHHHHH----HH
Confidence 45678999999999999999999999765532200000 000000000112222221 23
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 246 FMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 246 ~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
..+..+...++...+++.++.+..+..+++.+++..++||+++..++.|+.+++.|..+.....
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 3445566678889999999999999999999999999999999999999999999998776433
No 72
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00094 Score=56.70 Aligned_cols=104 Identities=14% Similarity=-0.041 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccch---HHHHHHHHHHHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHH
Q 019247 52 APITQSVLCYLSLALAYGGILLYRRQRLQVSW---YWYLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFT 127 (344)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~---~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla 127 (344)
+--.-+...+.+++++.+|+-..+-.+.-.++ ..-+..+++.... +.+-..+++..|....+++.++.|.+.++.+
T Consensus 175 ~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G 254 (292)
T COG5006 175 HGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSG 254 (292)
T ss_pred CCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHH
Confidence 44455667788888888888774433322222 2333455555555 5566799999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 128 WVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 128 ~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
+++++|++|..||.++...+.+..-...
T Consensus 255 ~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 255 LIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888765544
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.00075 Score=58.80 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHH---HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Q 019247 20 RTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSV---LCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG 96 (344)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~---~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 96 (344)
+..+++..-++.++..|.-....+... . +|.+..+ ..++++++++..+. +++..+++.++-++-|++...+
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~~---~-~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~nil~G~~w~ig 208 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAFH---V-SGWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKNILTGLIWGIG 208 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcC---C-ChhHhHHHHHHHHHHHHHHHhhcc--cccccccchHHhhHHHHHHHHH
Confidence 344456655555555555544433322 2 4444333 22333333332222 3333344456677888988889
Q ss_pred HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHH----HHHHHhhhce
Q 019247 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLF----GASLCVLGLG 151 (344)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~----~~~l~~~Gv~ 151 (344)
+.+++.|.+....+.+-.+..+.++...+.+.+++||+-+++++. |+.+.++|.+
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999988764 4445555554
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.61 E-value=0.0012 Score=49.53 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccchhHH-HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 82 SWYWYLLLGFVDVQGNFLFNKAFQFTSISSV-TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~-~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
++......-.......++...++++.|.+.+ ++-...-.+.+.+.+.+++||++++.+++++.+.+.|++.+
T Consensus 34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3333333333333447778899999999666 55566788889999999999999999999999999999765
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00089 Score=49.38 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhccchhHH-HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 94 VQGNFLFNKAFQFTSISSV-TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~-~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
.....++-.|+++.|.+.+ ++-...-.+.+++.+++++||+++..+++++.+.++|++.+-.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3347778899999999655 5667788888999999999999999999999999999987643
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.55 E-value=0.0049 Score=46.15 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 243 ASSFMFYTLVPFVLKLSGATML-ILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~-~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
.+...++.+...++|+.+..++ ++-.-+..+.+.+.+++++||++++.+++|..+|+.|++..+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4455667788888888774443 344446778889999999999999999999999999999874
No 77
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0074 Score=47.62 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=85.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKKI-DRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFM 247 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (344)
....++.+.+..+-.+..-..-+..+.. +|....+.....|.+++.+.....+.........+...|..+-|. ++...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~-lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGL-LGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccc-hhhhh
Confidence 4567788888888888887777776665 588888888888888875555544433322222233333333332 32222
Q ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhc----cccchhhHhHHHHHHHHHHhhhcc
Q 019247 248 FYTLVPFVLKLSG-ATMLILSVLTSDMWAVILRIFCYH----QQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 248 ~~~~~~~~l~~~~-a~~~~~~~~~~p~~~~i~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
-+ .-.....+.+ +........-+.+.+.+++-+=+. .+++...++|.+++++|+++.+.+
T Consensus 83 vt-~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 83 VT-SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hh-hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 12 2223334444 444445555667778888876554 668999999999999996665543
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0013 Score=48.56 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 243 ASSFMFYTLVPFVLKLSGATM-LILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~-~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++...+|.+...++|..+..+ .++-.-+..+.+.+.++++|||+++..+++|..++++|++..+...
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 445556777778888877443 3444446788899999999999999999999999999999887543
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.0018 Score=48.23 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 243 ASSFMFYTLVPFVLKLSGATM-LILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~-~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
.+...++.+...++|..+..+ .++-.-+..+.+.+.++++|||++++.+++|..++++|++..+..
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 445567777788888877443 344444677888999999999999999999999999999988643
No 80
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.41 E-value=0.002 Score=49.21 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 95 QGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
...+++..++++.|.+.+-.+ .....+.+.+++.++++|+++..+++|+.+.++|++.+-..+
T Consensus 42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 337778899999999777666 568888999999999999999999999999999998875533
No 81
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.40 E-value=0.0026 Score=47.35 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhccchhHH-HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 95 QGNFLFNKAFQFTSISSV-TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 95 ~~~~~~~~al~~~~~~~~-~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
...++...+++..|.+.+ ++-...-.+.+.+.+.+++||++++.+++++.+.+.|++.+-.
T Consensus 41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 347777899999999665 5556688888999999999999999999999999999987643
No 82
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.37 E-value=0.0053 Score=55.73 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=86.5
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHH--HHHHHHHHHHH-HHhhccc---cccccccchhhHHHHHH
Q 019247 167 RPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMI--GVYGLLVSVVQ-LSTLELK---SLESVKWSTDIILSFVG 240 (344)
Q Consensus 167 ~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 240 (344)
+...|+++.+++++|++...+-.|| .++-| ++.. |. .++.-++.... .....+. .....+.....+..+.|
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 4578999999999999999999988 44433 2222 32 12222222100 1111111 11112222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhcccc---c----hhhHhHHHHHHHHHHhhhcccc
Q 019247 241 NAASSFMFYTLVPFVLKLSGATMLILSVL-TSDMWAVILRIFCYHQQV---N----WTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~~~~e~~---~----~~~~~G~~li~~g~~l~~~~~~ 310 (344)
+.-.+++..+..++++.+.+..-.+.. +.-+.+.+++.+++||.. + ...++|.+++++|+++..+...
T Consensus 81 --~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 81 --ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred --HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335577888889999999766654444 777889999999999765 2 3578899999999999987443
No 83
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.30 E-value=0.003 Score=47.51 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=52.0
Q ss_pred HHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 97 NFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
.+++..+++..|.+.+-.+ .....+.+.+++++++||++++.+++|+.+.++|++++-.
T Consensus 44 f~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6677899999999777555 6678888999999999999999999999999999998854
No 84
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.26 E-value=9.1e-05 Score=63.13 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHH
Q 019247 167 RPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSF 246 (344)
Q Consensus 167 ~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
....|..+.-++ .++-...+..++.... ||.......+++-.++. .|..+...... -.+.....|+.+-+. . ..
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~-~p~e~a~~r~l~~mlit-~pcliy~~~~v-~gp~g~R~~LiLRg~-m-G~ 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN-DPMELASFRLLVRMLIT-YPCLIYYMQPV-IGPEGKRKWLILRGF-M-GF 108 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc-ChhHhhhhhhhhehhhh-heEEEEEeeee-ecCCCcEEEEEeehh-h-hh
Confidence 456788888888 7777777777776554 56555555543333333 23222211111 011112223222222 2 22
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 247 MFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 247 ~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
.+..+.++++++.+-+-+..+.+..|++++++++++++|+.|..+.+|..+-+.|+++..+++
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 234445577888888888889999999999999999999999999999999999999998765
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.23 E-value=0.0033 Score=54.71 Aligned_cols=68 Identities=7% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
-.+.+.+.+.++++.+|.+..+....+.++++++++++++++++..||.+..+..+|+.+........
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 45667888899999999999999999999999999999999999999999999999999998766543
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.21 E-value=0.00089 Score=50.22 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 84 YWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
+++.+.=.++..+...|++.+...+.+.+.++ +++.-++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 45666677788889999999999999998888 68999999999988877888889999999999999875
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.09 E-value=0.019 Score=45.25 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccc----cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 019247 38 SSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR----LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVT 113 (344)
Q Consensus 38 ~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 113 (344)
-...-.++.++-- +|+.-+++.+..+++.+..+....+++ .++..+++..-|+++...-.+........+++...
T Consensus 16 q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~ 94 (138)
T PF04657_consen 16 QAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIILVPRLGAALTT 94 (138)
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3333445554333 699999999999999888777655432 22334555667888887788888888999887666
Q ss_pred Hh-hcCchhHHHHHHHH----HhcccchHHHHHHHHHHhhhcee
Q 019247 114 LL-DCCAIPCAIVFTWV----FLGTRYSVWQLFGASLCVLGLGL 152 (344)
Q Consensus 114 ~l-~~~~p~~~~lla~l----~l~e~~~~~~~~~~~l~~~Gv~l 152 (344)
.+ ..-+.+...++..+ .-|+++++++.+|+.+.++|+.+
T Consensus 95 ~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 95 ILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55 44555556666664 35689999999999999999864
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.83 E-value=0.02 Score=41.76 Aligned_cols=55 Identities=7% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccccchhhHhHHHHH
Q 019247 244 SSFMFYTLVPFVLKLSGATML-ILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAV 298 (344)
Q Consensus 244 ~~~~~~~~~~~~l~~~~a~~~-~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li 298 (344)
+...++.++..++++.+..++ .+..-+..+...+.+.+++||++|+.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 455677888899999887666 3444478889999999999999999999999876
No 89
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.65 E-value=0.0053 Score=44.80 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHhhhccchhHHHH-hhcCchhHHHHHHHHHhcccchHHHHHHHHHH
Q 019247 96 GNFLFNKAFQFTSISSVTL-LDCCAIPCAIVFTWVFLGTRYSVWQLFGASLC 146 (344)
Q Consensus 96 ~~~~~~~al~~~~~~~~~~-l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~ 146 (344)
..+++..++++.|.+.+-. ......+.+.+.+.+++||+++..|+.|+.+.
T Consensus 42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3667789999999977755 46688999999999999999999999998763
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.64 E-value=0.015 Score=50.55 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=69.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYT 250 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (344)
|...++.|+++++-..+=.||.-. .|...+..+.+....+...+.....+.+.+ .. +..+-|. + -..++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f-----~p--~amlgG~-l-W~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-GDGFFFQWVMCSGIFLVGLVVNLILGFPPF-----YP--WAMLGGA-L-WATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-CCcHHHHHHHHHHHHHHHHHHHHhcCCCcc-----ee--HHHhhhh-h-hhcCce
Confidence 456678888888888888877543 366555555444444444322222221111 11 1111111 1 122333
Q ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHH-Hhcccc-----chhhHhHHHHHHHHHHhhhccccCC
Q 019247 251 LVPFVLKLSGATMLILSV-LTSDMWAVILRIF-CYHQQV-----NWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 251 ~~~~~l~~~~a~~~~~~~-~~~p~~~~i~~~~-~~~e~~-----~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
+..-.++..|-...-.+- ..+.+.+-..+-+ +||++. ++..++|.+++++|..++..-+.+.
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 333445555533333222 2344555555433 455443 4579999999999999987655433
No 91
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.48 E-value=0.62 Score=41.97 Aligned_cols=253 Identities=11% Similarity=0.106 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh----------ccccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-hhcCchh
Q 019247 53 PITQSVLCYLSLALAYGGILLYR----------RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTL-LDCCAIP 121 (344)
Q Consensus 53 p~~~~~~r~~~~~l~l~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~-l~~~~p~ 121 (344)
+++..+.-..+-.-+..|+.... +..+........+.|++.-.+...+=.+++|...+...- ...+...
T Consensus 33 sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~ 112 (344)
T PF06379_consen 33 SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAV 112 (344)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555555555555554421 122233455667778777777888889999998866543 3455555
Q ss_pred HHHHHHHHHhc-------ccchHHHHHHHHHHhhhceeeeecccccCC-----CCCCchHHHHHHHHHhHHHHHHHHHHH
Q 019247 122 CAIVFTWVFLG-------TRYSVWQLFGASLCVLGLGLMLLSDAEMAG-----GGGSRPLLGDILVIAGAIFFAMSYVGE 189 (344)
Q Consensus 122 ~~~lla~l~l~-------e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~-----~~~~~~~~G~~l~l~~~~~~a~~~v~~ 189 (344)
+-.++-.++.+ ++-....++|++++++|+.+....+..++. ..+.+...|.+++++|.++.|.++.-.
T Consensus 113 ~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 113 FGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred HhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55555444433 333557899999999999998776543221 123445689999999999999998776
Q ss_pred HHhhcC--------CChH----HHHHHHHHHHHHHHHHHHHhhc---ccccc---ccccchhhHH--HHHHHHHHHH--H
Q 019247 190 EFLVKK--------IDRV----EVVCMIGVYGLLVSVVQLSTLE---LKSLE---SVKWSTDIIL--SFVGNAASSF--M 247 (344)
Q Consensus 190 ~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~--~~~~~~~~~~--~ 247 (344)
..-..- .++. ......+.-|.+..+ ...... ..+.. +.......+. .+.....+.. .
T Consensus 193 ~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~-~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~ 271 (344)
T PF06379_consen 193 DAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNL-IYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYS 271 (344)
T ss_pred HcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHH-HHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHH
Confidence 432210 1111 111223333444442 222221 11111 1110111111 1111111122 2
Q ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhcccc------chhhHhHHHHHHHHHHhhhc
Q 019247 248 FYTLVPFVLKLSG----ATMLILSVLTSDMWAVILRIFCYHQQV------NWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 248 ~~~~~~~~l~~~~----a~~~~~~~~~~p~~~~i~~~~~~~e~~------~~~~~~G~~li~~g~~l~~~ 307 (344)
.+..|-.+-.+.+ ..--.+.+.+..+++-+++.+. +|.= -...++|+++++.++.++-.
T Consensus 272 qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 272 QFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 2222222223333 3333466667788888888765 7652 23568899888888887654
No 92
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.31 E-value=0.058 Score=46.22 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhcee
Q 019247 85 WYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (344)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l 152 (344)
..+...+....+..+....++|.+....+....+.++++.+++.++++|+++..+++|+.+.+.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33444455555577788999999999999999999999999999999999999999999999998764
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.06 E-value=0.018 Score=51.69 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CCChhHHHHHHHHHHHHHHHH-HHHHhhccccc-----cc----hHHHHH
Q 019247 21 TLYLLLLGQLVSFSLALSSFTTAVITD-L-GVDAPITQSVLCYLSLALAYG-GILLYRRQRLQ-----VS----WYWYLL 88 (344)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~~~~-----~~----~~~~~~ 88 (344)
++.|...+...-.....-+....++.. + .-.++......-.-.+.+.++ |+......... .. ......
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 455666666555555555666665553 1 222677777777777777777 77665332111 11 123334
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 89 LGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 89 ~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
.+++....|...|..+..+++-..++....-=.++...+++++++++++.+..|.+++++|+.+-..
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 4455555588889999999999999999888888889999999999999999999999999987544
No 94
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.82 Score=41.28 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHHHHhhcc---cc-ccccc---cchh-hHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKI----DRVEVVCMIGVYGLLVSVVQLSTLEL---KS-LESVK---WSTD-IILS 237 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~---~~~~-~~~~ 237 (344)
.-....+...+..+......|...++. .+.+..+..-+.-.+++......-+. .. ..... +..+ ...-
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 344555556666777777776655443 35566666556656655322222211 11 11111 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 238 FVGNAASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
...-.+.-.+-+-+++.++.+.+|++..+...+..+-++++..++++++++..||....+..+|+.+.+....
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 1111111223344667788999999999999999999999999999999999999999999999999995443
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.75 E-value=0.046 Score=41.10 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 177 AGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 177 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
+.+++|++.+-+.||..+..++..-.. . .+.-... .. .+|... ..+.. ...+-..|++.+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~-~~~~~~~----Ll--------~n~~y~--ipf~l----Nq~GSv~f~~~L 62 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-Q-LLQEIKF----LL--------LNPKYI--IPFLL----NQSGSVLFFLLL 62 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-H-HHHHHHH----HH--------HhHHHH--HHHHH----HHHHHHHHHHHH
Confidence 456889999999999887654332221 1 1111111 00 011111 11222 223334444567
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhh
Q 019247 257 KLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIY 305 (344)
Q Consensus 257 ~~~~a~~~~~~-~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~ 305 (344)
.+.+-+.+..+ +.+.-+++++.++++.+|..+...++|++++++|+.++
T Consensus 63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 77775555554 46778899999998888888889999999999998764
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.016 Score=48.86 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=68.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeee
Q 019247 79 LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
.+..|+...++++.+..++++.+.-..+-++-..+++..+--.||++.+.++++.+++.+||+|..+.+.|...-..
T Consensus 237 hP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 237 HPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 44567788889999999999999999999999999999999999999999999999999999999999998865444
No 97
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.48 E-value=0.29 Score=44.37 Aligned_cols=141 Identities=21% Similarity=0.168 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--CChhHHHHHHHHHHHHHHHHHHHHh----hcc----ccccchHH
Q 019247 17 MALRTLYLLLLGQLVSFSLALSSFTTAVITD-LG--VDAPITQSVLCYLSLALAYGGILLY----RRQ----RLQVSWYW 85 (344)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~p~~~~~~r~~~~~l~l~~~~~~----~~~----~~~~~~~~ 85 (344)
-..|..+|-+++++.|++-+.-....++-.. +| +.-+..+.+.. ++..++++|..+. ++. +...+...
T Consensus 241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvG-LfnllllwP~l~iL~~~~~e~F~lP~~~q~~~ 319 (416)
T KOG2765|consen 241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVG-LFNLLLLWPPLIILDFFGEERFELPSSTQFSL 319 (416)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHH-HHHHHHHhHHHHHHHHhccCcccCCCCceeEe
Confidence 4466778899999888888777666665444 32 21244433333 2344444444331 111 22223344
Q ss_pred HHHHHHHHHHH-HHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeeccc
Q 019247 86 YLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (344)
Q Consensus 86 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (344)
.++.++++... .+++..|.-.+++-.+++-.+++.+..++.-.++.++++++..++|...+++|.+++...+.
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 55667777666 99999999999999999998889888889998888999999999999999999999887664
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.42 E-value=0.52 Score=42.48 Aligned_cols=144 Identities=15% Similarity=0.089 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhcccccc----ccccchhhHHHHHHH
Q 019247 166 SRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLE----SVKWSTDIILSFVGN 241 (344)
Q Consensus 166 ~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 241 (344)
.+...|+++..+++++.+.+.+=.||. |+-+-...-....+++-++.........-+++. ..+.+...+..+.+.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 345789999999999999999999885 334444444445556655552222222222221 222233333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHhcc-------ccchhhHhHHHHHHHHHHhhhccccCC
Q 019247 242 AASSFMFYTLVPFVLKLSGATMLI-LSVLTSDMWAVILRIFCYHQ-------QVNWTYYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~a~~~~-~~~~~~p~~~~i~~~~~~~e-------~~~~~~~~G~~li~~g~~l~~~~~~~~ 312 (344)
.=+++-..+-.++|+.+.+... +..-+.-+++.++.-++.|+ +-....++|.++.++|+.+..+....|
T Consensus 82 --lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 82 --LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred --HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 2334455555778888854433 33334555566665554332 223468999999999999998765433
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.59 Score=37.02 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchHHHHHHHHHHHHHHHHHHHhhhccc
Q 019247 34 SLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL-----QVSWYWYLLLGFVDVQGNFLFNKAFQFTS 108 (344)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 108 (344)
+.-.-+-.-..+.+ ...+|+.-.+..+.++.+++..+.+.++++. .+..++.+.-|+++...-...........
T Consensus 16 ~l~~Q~~iN~qL~~-~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lG 94 (150)
T COG3238 16 LLPLQAAINGRLAR-YLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLG 94 (150)
T ss_pred hhhhHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchh
Confidence 33333344445555 4447999999999998888887776543221 23345566666665555444444445554
Q ss_pred h-hHHHHhhcCchhHHHHHHHHH----hcccchHHHHHHHHHHhhhceee
Q 019247 109 I-SSVTLLDCCAIPCAIVFTWVF----LGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 109 ~-~~~~~l~~~~p~~~~lla~l~----l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
+ ....++.+-+.+..+++..+= -+++++..+++|+.+.++|+.++
T Consensus 95 a~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 95 AATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 4 333444545555555544321 24788999999999999995444
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.68 E-value=0.013 Score=49.81 Aligned_cols=132 Identities=10% Similarity=0.028 Sum_probs=82.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFYT 250 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (344)
+.++++.=++.|+..-....|.. .+|.+.+.-..+-++++.. ..+.+..+. ..+.......+ +- +.-..++.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G--G~p~qQ~lGtT~GALifai-iv~~~~~p~---~T~~~~iv~~i-sG-~~Ws~GQ~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG--GKPYQQTLGTTLGALIFAI-IVFLFVSPE---LTLTIFIVGFI-SG-AFWSFGQA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC--CChhHhhhhccHHHHHHHH-HHheeecCc---cchhhHHHHHH-hh-hHhhhhhh
Confidence 46778888999998777665543 3566666655555555553 333332222 12222222222 21 22335677
Q ss_pred HHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHHhhhcccc
Q 019247 251 LVPFVLKLSGATMLILSVL-TSDMWAVILRIFCYHQQVNWTYY----LAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 251 ~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~~~ 310 (344)
..+++.+..+.+.+..+.. .+-+-+.+++++.|||..+..++ +..++++.|+.+..+.++
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 7788888888877775555 55677889999999999988654 456777788887765444
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.019 Score=50.80 Aligned_cols=125 Identities=15% Similarity=0.069 Sum_probs=87.4
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHH
Q 019247 164 GGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAA 243 (344)
Q Consensus 164 ~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
...++.+|..+++.+.++.+....+.||..++... . ....++.....-.++..|. |. +
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~--------------~----~~ra~~gg~~yl~~~~Ww~---G~-l 72 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA--------------S----GLRAGEGGYGYLKEPLWWA---GM-L 72 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh--------------h----cccccCCCcchhhhHHHHH---HH-H
Confidence 34566789999999999999999999887665311 0 0000111101111222333 22 3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 244 SSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 244 ~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.++++-.+-+.+....+++.++.+..++.+.+++++..+++|++++...+|+++.++|..+......
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 3444555555666778999999999999999999999999999999999999999999887765443
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.52 E-value=0.2 Score=44.06 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc---------cccccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 019247 37 LSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR---------QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFT 107 (344)
Q Consensus 37 ~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 107 (344)
.++..-.++..+.-.+++.+.+.--+..++.-........ +..+..++-.++.+.++..++.+.|+-++.-
T Consensus 186 fTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 186 FTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERF 265 (327)
T ss_pred hHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhc
Confidence 3333333555443336777666655555555544443221 1234456778889999999988888888777
Q ss_pred chhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhcee
Q 019247 108 SISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (344)
Q Consensus 108 ~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l 152 (344)
.+-.-+.++.+-=+++.+++.+.++.+++..||.|+.+.+.|..+
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 776666666689999999999999999999999998888877754
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.59 E-value=0.13 Score=42.31 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 249 YTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 249 ~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++.|..+++..+++.++.+...+..+..+++++++|+++....++...+.+.|+++..+..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 6667788999999999999999999999999999999999999999999999999887544
No 104
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=92.21 E-value=0.14 Score=37.29 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeee
Q 019247 84 YWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (344)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 154 (344)
+.|.+.-.++.-++.++|.-+++.+.+.+..+ ++++-.++++.+..+-.|-...+...|..+.+.|+.+++
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 56777778888889999999999999887776 567788899999755334445667889999999988764
No 105
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=89.72 E-value=0.064 Score=47.09 Aligned_cols=132 Identities=11% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhcc---------cc-ccccccchhhHH--HHHHHHH
Q 019247 176 IAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLEL---------KS-LESVKWSTDIIL--SFVGNAA 243 (344)
Q Consensus 176 l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~--~~~~~~~ 243 (344)
+++.+||+-.-..+|..-++....+...|=+.++.++..++..+.-+ ++ +++.....+.-+ .+.|- +
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG-v 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG-V 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh-H
Confidence 45678888887777666554332333444444444444333322211 11 111222222222 22222 3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhccccc--hhhHhHHHHHHHHHHhhhccc
Q 019247 244 SSFMFYTLVPFVLKLSGATMLILSVL-TSDMWAVILRIFCYHQQVN--WTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 244 ~~~~~~~~~~~~l~~~~a~~~~~~~~-~~p~~~~i~~~~~~~e~~~--~~~~~G~~li~~g~~l~~~~~ 309 (344)
..-+++.+..+++...+-+++-.+.. +..++++.+.|+. +.+.+ ..-+.|.+++++++++-....
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ah 148 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAAAH 148 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHHHH
Confidence 34466777777777766444433221 2334455555554 44443 356778888888888766433
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.33 E-value=1.9 Score=37.78 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 308 (344)
++-..+-.+++.++...+++...+.--...++..+++.-+++.+++..||+|...+.+|++.+-..
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 555666777778888888888887777778899999999999999999999999999999988654
No 107
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=20 Score=32.16 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhcCCC-hH--HHHHHHHHHHHHHHHHHHHhhccccccccccch-hhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 181 FFAMSYVGEEFLVKKID-RV--EVVCMIGVYGLLVSVVQLSTLELKSLESVKWST-DIILSFVGNAASSFMFYTLVPFVL 256 (344)
Q Consensus 181 ~~a~~~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
+..+-.+..|......+ |. ....++.+.+.+... ..-...--++++.++.. .-|...-.+ +-..+.... +++
T Consensus 23 sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~-~lk~~~lv~~~~l~~~~~kk~~P~~~l-f~~~i~t~~--~sl 98 (314)
T KOG1444|consen 23 SSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVL-VLKRLGLVNFRPLDLRTAKKWFPVSLL-FVGMLFTGS--KSL 98 (314)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHhceeecCCcChHHHHHHccHHHH-HHHHHHHcc--ccc
Confidence 33334455666665542 33 344477777776663 22222222333333322 122211111 111111222 678
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++.+.....++-...|++.++....++|-+++...+.....+++|........
T Consensus 99 k~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 99 KYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred cccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999999999999999999999988887544
No 108
>PRK02237 hypothetical protein; Provisional
Probab=87.22 E-value=1.2 Score=32.83 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 270 TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 270 ~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.-.+.+.++.+.+-|++|+...++|.+++++|+.+....+|
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 45678889999999999999999999999999988876554
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.08 E-value=1.2 Score=32.74 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 270 TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 270 ~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.-.+.+.++++.+-|++|+...++|..++++|+.+....+|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 35678899999999999999999999999999999877654
No 110
>PRK02237 hypothetical protein; Provisional
Probab=86.07 E-value=11 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.656 Sum_probs=35.9
Q ss_pred HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeec
Q 019247 113 TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (344)
Q Consensus 113 ~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (344)
+.--....+...+..+.+-|+|++..+++|..++++|+.++...
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 33344556667788999999999999999999999999888664
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=86.03 E-value=18 Score=31.61 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 019247 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFT 107 (344)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 107 (344)
+.++|.+.-|+++...|-...+ +++...++......+.-+.....+. .++-..+-++-|.+...+|.+..-.++..
T Consensus 4 a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~--~p~f~p~amlgG~lW~~gN~~~vpii~~i 79 (254)
T PF07857_consen 4 ACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILG--FPPFYPWAMLGGALWATGNILVVPIIKTI 79 (254)
T ss_pred hHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcC--CCcceeHHHhhhhhhhcCceeehhHhhhh
Confidence 4445555556655555544433 4566555555444444333333332 22334455666788888899999999999
Q ss_pred chhHHHHhhcCchhHH-HHHHHH-Hhccc-----chHHHHHHHHHHhhhceeeeecc
Q 019247 108 SISSVTLLDCCAIPCA-IVFTWV-FLGTR-----YSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 108 ~~~~~~~l~~~~p~~~-~lla~l-~l~e~-----~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
..+....+-++.-..+ -..+++ +++++ -+...++|++++++|..+...-+
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 9999998876644443 233322 33322 25668999999999988776543
No 112
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=85.86 E-value=15 Score=28.70 Aligned_cols=18 Identities=17% Similarity=0.336 Sum_probs=11.1
Q ss_pred hhHhHHHHHHHHHHhhhc
Q 019247 290 TYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 290 ~~~~G~~li~~g~~l~~~ 307 (344)
..++|..+++.|++....
T Consensus 88 ~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666667777665553
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=0.83 Score=39.76 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcc--------cc--ccchHHHHHH
Q 019247 20 RTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--------RL--QVSWYWYLLL 89 (344)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--------~~--~~~~~~~~~~ 89 (344)
-.+.|+++|.+.++..+.-+...++........-+.++++.-..+.++++|.+..... +. .+-|..+.+-
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 4578899999988888777766665544433357888999999999999988774321 11 1122222333
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeee
Q 019247 90 GFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (344)
Q Consensus 90 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 154 (344)
|+++...++--..=++.++|-...+=...-...-.+++..+++|-.+...|-+-.+.+.|...-.
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 34444334333344444444222111112223345678889999999888887666555554433
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=84.25 E-value=9.4 Score=28.21 Aligned_cols=45 Identities=22% Similarity=0.659 Sum_probs=38.0
Q ss_pred HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 113 TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 113 ~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
+.--....+...+..+.+-|+|++..+++|..+|++|+.++....
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 444556677788889999999999999999999999999988743
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=79.91 E-value=6.7 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=26.7
Q ss_pred HHHHHHHHHhccccchhhHhHHHHHHHHHHhh
Q 019247 274 WAVILRIFCYHQQVNWTYYLAFAAVLIGLIIY 305 (344)
Q Consensus 274 ~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~ 305 (344)
+-+.++.++++|++++....|.++++.++.+.
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34466778999999999999999999887654
No 116
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.91 E-value=12 Score=32.74 Aligned_cols=106 Identities=9% Similarity=0.128 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc----------ccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhH
Q 019247 53 PITQSVLCYLSLALAYGGILLYRRQ----------RLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPC 122 (344)
Q Consensus 53 p~~~~~~r~~~~~l~l~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~ 122 (344)
...++++.+.+++.+++..+..... ++.+.....++.+..+..+......=++.-.+..++.+...--..
T Consensus 220 s~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKav 299 (367)
T KOG1582|consen 220 SSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAV 299 (367)
T ss_pred cceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHH
Confidence 4555666666666666555543321 111122233344444444432222333444556666666677788
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHhhhceeeeeccc
Q 019247 123 AIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (344)
Q Consensus 123 ~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (344)
|.++|++++.++++-...-+..+.+.|+.+=..++.
T Consensus 300 Ti~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 300 TILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999888763
No 117
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=78.34 E-value=34 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=39.7
Q ss_pred HhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 102 KAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 102 ~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
.=+..++.-..++..--.=+.+.+++.++++++++...|.|..++..|+..=
T Consensus 262 lLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 262 LLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred heeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 4444555544444444456778899999999999999999999999999775
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.37 E-value=35 Score=25.26 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=35.1
Q ss_pred HhhhccchhHHHHhhc-CchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 102 KAFQFTSISSVTLLDC-CAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 102 ~al~~~~~~~~~~l~~-~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
.|.+.-+.+.--+++= .+-..-+.++.+++||++++....|.+..+.++..+
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 5555555554444432 233334567888999999999999988887776654
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=68.89 E-value=44 Score=24.63 Aligned_cols=45 Identities=22% Similarity=0.564 Sum_probs=36.2
Q ss_pred HHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 113 TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 113 ~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
+.--........+..+..-|.++++.+++|..+|++|+.++....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 333445566677788888899999999999999999999888743
No 120
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=68.09 E-value=46 Score=24.54 Aligned_cols=41 Identities=7% Similarity=-0.039 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 270 TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 270 ~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
.-.+.+.++.+.+=|.+|+...++|..+.++|+.+....++
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 35678889999999999999999999999999888776544
No 121
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.06 E-value=44 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=28.3
Q ss_pred HHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 274 WAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 274 ~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
+-+.++.+.++|++.+..+.|.+++..|+.+.-
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999999999988764
No 122
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=68.00 E-value=73 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=17.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhccchh
Q 019247 78 RLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSIS 110 (344)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 110 (344)
..+..+++.++.+..........+......|+.
T Consensus 141 ~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 141 KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 334455666666665555544444444445543
No 123
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=67.08 E-value=75 Score=26.62 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=21.7
Q ss_pred HHHHHHHhccccchhhHhHHHHHHH--HHHhhhcc
Q 019247 276 VILRIFCYHQQVNWTYYLAFAAVLI--GLIIYSTT 308 (344)
Q Consensus 276 ~i~~~~~~~e~~~~~~~~G~~li~~--g~~l~~~~ 308 (344)
-.+|..++++..-+.+.+|..+.++ |.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3457777788887888888766543 55555543
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=66.35 E-value=1.4e+02 Score=29.34 Aligned_cols=17 Identities=0% Similarity=-0.040 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019247 266 LSVLTSDMWAVILRIFC 282 (344)
Q Consensus 266 ~~~~~~p~~~~i~~~~~ 282 (344)
......|+-+.++|.+.
T Consensus 351 ~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445666677777654
No 125
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=65.26 E-value=2.1 Score=37.39 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHhhhccchhHHHHhhcCchhHHH--HHHHHHhcccchHHHHHHHHHHhhhc
Q 019247 101 NKAFQFTSISSVTLLDCCAIPCAI--VFTWVFLGTRYSVWQLFGASLCVLGL 150 (344)
Q Consensus 101 ~~al~~~~~~~~~~l~~~~p~~~~--lla~l~l~e~~~~~~~~~~~l~~~Gv 150 (344)
|.-++-.+-+...++.+...+.++ ++-.+|.|+-+-+...+++++.++-.
T Consensus 41 ~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~l 92 (381)
T PF05297_consen 41 FIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVL 92 (381)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence 344444444455555554444422 22233334444566666655554433
No 126
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=64.72 E-value=34 Score=32.63 Aligned_cols=12 Identities=25% Similarity=0.471 Sum_probs=5.4
Q ss_pred ccccccccCCCC
Q 019247 331 DDENMASRGKES 342 (344)
Q Consensus 331 ~~~~~~~~~~e~ 342 (344)
|++|.|.|++|+
T Consensus 443 ~~~~~~~~~~~~ 454 (455)
T TIGR00892 443 DKKDAEGDSRES 454 (455)
T ss_pred cccccccccccC
Confidence 334444455543
No 127
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=61.91 E-value=1.4e+02 Score=27.91 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 019247 179 AIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVV 215 (344)
Q Consensus 179 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (344)
++..-+...=.||..|..++....+....++.++..+
T Consensus 64 ai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 64 AIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred HHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555677777767777777777777777643
No 128
>PF15345 TMEM51: Transmembrane protein 51
Probab=61.31 E-value=5.9 Score=33.62 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHhhhccccCCCCCC
Q 019247 292 YLAFAAVLIGLIIYSTTAKDLLPIP 316 (344)
Q Consensus 292 ~~G~~li~~g~~l~~~~~~~~~~~~ 316 (344)
-.|+++.++++++..+.++++....
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~ 90 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGE 90 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4577777888888887776554443
No 129
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=60.10 E-value=44 Score=28.54 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccc--------ccc-hHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHH
Q 019247 53 PITQSVLCYLSLALAYGGILLYRRQRL--------QVS-WYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCA 123 (344)
Q Consensus 53 p~~~~~~r~~~~~l~l~~~~~~~~~~~--------~~~-~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 123 (344)
.++-.++.-+++.-+++.+.+...... +.+ ..+.++-|++.++..++--..++-++....+++..+.-...
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~ 264 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPI 264 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChH
Confidence 444555555565555555544322111 112 23555666666666777778888888888888888887788
Q ss_pred HHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 124 IVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 124 ~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
++-+.++++|+.+...+.++.++++...+-
T Consensus 265 alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 265 ALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 888888899998888888877766544443
No 130
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=58.45 E-value=2.3e+02 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=31.5
Q ss_pred hHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceee
Q 019247 110 SSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (344)
Q Consensus 110 ~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 153 (344)
+.+.++..+.|.-.+.++.+.+.+|.+...+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 55677888999999999988877775455566666666676543
No 131
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=57.69 E-value=2.3 Score=36.72 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 245 SFMFYTLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 245 ~~~~~~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
-.-++.+...+.++.+-+.+..+..-..+.-.+++|++++.+-.+.++.|.++.+.|+++.....
T Consensus 88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 33445455566677777777777777777788999999999999999999999999999887543
No 132
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=56.06 E-value=1.8e+02 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcc-ccchhhHhHHHHHHHHHHhhhccccC
Q 019247 271 SDMWAVILRIFCYHQ-QVNWTYYLAFAAVLIGLIIYSTTAKD 311 (344)
Q Consensus 271 ~p~~~~i~~~~~~~e-~~~~~~~~G~~li~~g~~l~~~~~~~ 311 (344)
.|+++.+ +++.++- .-...-..|++.+++|++++.+.+.+
T Consensus 169 ~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 169 APLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444433 5555443 33334667788888888888765443
No 133
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=54.10 E-value=49 Score=27.92 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccccc-hhhHhH-HHHHHHHHHhhh
Q 019247 258 LSGATMLILSVLTSDMWAVILRIFCYHQQVN-WTYYLA-FAAVLIGLIIYS 306 (344)
Q Consensus 258 ~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~-~~~~~G-~~li~~g~~l~~ 306 (344)
...+...+.+....|..+..++..+-+-.+. ..+++| ..++.+|..+..
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888877544434 356666 455666877664
No 134
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=53.58 E-value=73 Score=22.09 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=37.8
Q ss_pred hHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 019247 5 NAIISCWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILL 73 (344)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~ 73 (344)
|++.+++.++|.-|=++.+..+- +++++.|...+...+-..+++ ..+.+.+.-+...++.++-+..
T Consensus 4 ~~C~~~~F~~KiGRC~rCM~QLt--vLs~~~w~iWw~~f~d~P~si-eSIALl~~~~AfsgLL~lHLvv 69 (77)
T PF12292_consen 4 NDCQESWFWQKIGRCQRCMWQLT--VLSVLSWPIWWFFFRDTPTSI-ESIALLFFCFAFSGLLFLHLVV 69 (77)
T ss_pred hhHHHHHHHHHhccHHHHHHHHH--HHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44545555554444455444422 235567777666665554455 6677777777777776665543
No 135
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.82 E-value=9.3 Score=29.21 Aligned_cols=20 Identities=0% Similarity=0.017 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHhhhccccCC
Q 019247 293 LAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 293 ~G~~li~~g~~l~~~~~~~~ 312 (344)
.|++.+++.+.+..++.+|+
T Consensus 75 aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34444444334443333333
No 136
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=48.87 E-value=27 Score=33.40 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=19.9
Q ss_pred cchhhHhHHHHHHHHHHhhhcccc
Q 019247 287 VNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 287 ~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
++..|++.+.++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999888765444
No 137
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=48.84 E-value=1.8e+02 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHhcccc-chhhHhHHHHHHHHHHhhh
Q 019247 277 ILRIFCYHQQV-NWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 277 i~~~~~~~e~~-~~~~~~G~~li~~g~~l~~ 306 (344)
+.|.+. ++.. -....+|+.+-+.=..++-
T Consensus 176 lYGlli-~D~~IaipN~iG~~l~~~QL~Ly~ 205 (243)
T KOG1623|consen 176 LYGLLI-KDFFIAIPNVLGFLLGLIQLILYF 205 (243)
T ss_pred HHHHHh-cCeEEEcccHHHHHHHHHHHHHhh
Confidence 334444 4433 3456688888777777773
No 138
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=48.46 E-value=19 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccccCCCC
Q 019247 270 TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 314 (344)
Q Consensus 270 ~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 314 (344)
-.++..++.++++.|.+-+..|+...+++-+|+++.+..+.++-+
T Consensus 100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 456778899999999999999999999999999999987765543
No 139
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=47.32 E-value=1e+02 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=17.6
Q ss_pred HHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHH
Q 019247 144 SLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMS 185 (344)
Q Consensus 144 ~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~ 185 (344)
+..++|+++....+.-+ .+...-..-|+.+++.+.+...++
T Consensus 15 ~~~v~Gi~Lf~~A~~LS-~s~~FyY~sg~~lGv~~s~li~~~ 55 (249)
T PF10225_consen 15 AQFVLGIVLFFLAPSLS-RSVLFYYSSGISLGVLASLLILLF 55 (249)
T ss_pred HHHHHHHHHHHHhHHhc-cChhHHHhhhHHHHHHHHHHHHHH
Confidence 34556666665543211 111122234555555544444443
No 140
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=45.49 E-value=30 Score=27.15 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019247 257 KLSGATMLILSVLTSDMWAVILRIFC 282 (344)
Q Consensus 257 ~~~~a~~~~~~~~~~p~~~~i~~~~~ 282 (344)
..-+....+.+.++.|+++.+++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777788877777665
No 141
>PRK11469 hypothetical protein; Provisional
Probab=45.32 E-value=64 Score=26.77 Aligned_cols=46 Identities=9% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHH-HHHHHHHhhh
Q 019247 261 ATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFA-AVLIGLIIYS 306 (344)
Q Consensus 261 a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~-li~~g~~l~~ 306 (344)
+...+.+....|..+...+..+-+-.....+|+|.. ++..|..+..
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677888888888887755555566788755 4445766664
No 142
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=44.18 E-value=33 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=16.3
Q ss_pred HHHhccccchhhH----hHHHHHHHHHHhhhcc
Q 019247 280 IFCYHQQVNWTYY----LAFAAVLIGLIIYSTT 308 (344)
Q Consensus 280 ~~~~~e~~~~~~~----~G~~li~~g~~l~~~~ 308 (344)
|++--|.++++.+ +.++.+++|+++..+.
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4455677776532 3345555676666543
No 143
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=43.05 E-value=2.2e+02 Score=27.21 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=7.6
Q ss_pred hHhHHHHHHHHHHhhh
Q 019247 291 YYLAFAAVLIGLIIYS 306 (344)
Q Consensus 291 ~~~G~~li~~g~~l~~ 306 (344)
.+.|+..++++++...
T Consensus 416 ~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 416 SLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555444443
No 144
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=41.86 E-value=38 Score=25.04 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=37.9
Q ss_pred HHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 252 VPFVLKLSGATMLI-LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 252 ~~~~l~~~~a~~~~-~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
|+..+.+.+-+.+. +.+.+.-.++.+.+..+-.|......+.|..++++|+.++.
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 33445555543333 33345677888888887666667789999999999998763
No 145
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=41.63 E-value=3.2e+02 Score=26.05 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=9.8
Q ss_pred HHHHHHHHhcccch
Q 019247 123 AIVFTWVFLGTRYS 136 (344)
Q Consensus 123 ~~lla~l~l~e~~~ 136 (344)
..+++.++.+-|..
T Consensus 7 ~~~~~~~~~g~~~~ 20 (433)
T PRK09412 7 IIVLLAIFLGARLG 20 (433)
T ss_pred HHHHHHHHHhHhhh
Confidence 45677788887763
No 146
>PHA03049 IMV membrane protein; Provisional
Probab=40.80 E-value=38 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=15.1
Q ss_pred hHhHHHHHHHHHHhhhccccCCC
Q 019247 291 YYLAFAAVLIGLIIYSTTAKDLL 313 (344)
Q Consensus 291 ~~~G~~li~~g~~l~~~~~~~~~ 313 (344)
.++++..+++|.++|...++++.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 35666777778888876555443
No 147
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=39.70 E-value=75 Score=20.33 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 019247 138 WQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (344)
Q Consensus 138 ~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~ 194 (344)
...+|..+.++|++++..++ .|.+..+++....|......|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPG------------pG~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG------------PGLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC------------CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35678889999999988754 2667777777778877777776654
No 148
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.34 E-value=10 Score=33.29 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 019247 249 YTLVPFVLKLSGATMLILSVL 269 (344)
Q Consensus 249 ~~~~~~~l~~~~a~~~~~~~~ 269 (344)
.++|.+.+++.+|+.-+++.+
T Consensus 122 vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 122 VWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 344456788888877766543
No 149
>PRK11380 hypothetical protein; Provisional
Probab=38.33 E-value=1.1e+02 Score=27.97 Aligned_cols=25 Identities=16% Similarity=-0.090 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhc
Q 019247 82 SWYWYLLLGFVDVQGNFLFNKAFQF 106 (344)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~al~~ 106 (344)
+-.+.+.++.+...-...+.-++++
T Consensus 116 Eq~r~L~L~aVya~~~g~~~etLet 140 (353)
T PRK11380 116 EKRQALQLIAVYRFYHGQWSETLEF 140 (353)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhhhc
Confidence 3455666666655544555555665
No 150
>PRK11715 inner membrane protein; Provisional
Probab=38.30 E-value=2.4e+02 Score=26.92 Aligned_cols=20 Identities=30% Similarity=0.379 Sum_probs=12.4
Q ss_pred cccccchHHHHHHHHHHHHH
Q 019247 77 QRLQVSWYWYLLLGFVDVQG 96 (344)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~ 96 (344)
++.+-++.+|++.|+..+..
T Consensus 325 ~~~~iHpiQYlLVGlAl~lF 344 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLF 344 (436)
T ss_pred cCceecHHHHHHHHHHHHHH
Confidence 44555677888877654433
No 151
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=37.80 E-value=2.1e+02 Score=27.80 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.4
Q ss_pred HHHHHhhhcee
Q 019247 142 GASLCVLGLGL 152 (344)
Q Consensus 142 ~~~l~~~Gv~l 152 (344)
|++..+.|++.
T Consensus 213 G~i~~~~gi~~ 223 (495)
T KOG2533|consen 213 GVITLVLGIVV 223 (495)
T ss_pred HHHHHHHHheE
Confidence 33334444333
No 152
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=37.73 E-value=2e+02 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=24.6
Q ss_pred hhHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 019247 4 MNAIISCWSGRSQMALRTLYLLLLGQLVSFSLALS 38 (344)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (344)
.++++++.-|++..++-.+.+.+...+..++.|..
T Consensus 13 ~~Dii~E~yG~~~a~~~i~~g~~~~~~~~~~~~~~ 47 (145)
T PF02592_consen 13 ITDIISEVYGKKAARKAIWIGFLANLLFSLLIWIV 47 (145)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888777777777777766665555544
No 153
>PF14851 FAM176: FAM176 family
Probab=37.70 E-value=50 Score=26.37 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=4.8
Q ss_pred HhhHHHHHHHH
Q 019247 258 LSGATMLILSV 268 (344)
Q Consensus 258 ~~~a~~~~~~~ 268 (344)
+-.+-.+++..
T Consensus 16 ~~~PE~~aLYF 26 (153)
T PF14851_consen 16 RDNPERFALYF 26 (153)
T ss_pred HhChHHHHHHH
Confidence 33444444443
No 154
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=37.42 E-value=75 Score=27.27 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=9.4
Q ss_pred cccchHHHHHHHHHHHH
Q 019247 79 LQVSWYWYLLLGFVDVQ 95 (344)
Q Consensus 79 ~~~~~~~~~~~g~~~~~ 95 (344)
.++..+.++++|.+-..
T Consensus 107 r~k~P~N~ilL~iFT~a 123 (237)
T KOG2322|consen 107 RRKSPVNLILLGIFTLA 123 (237)
T ss_pred cccCcHHHhHHHHHHHH
Confidence 34555567777764433
No 155
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=36.50 E-value=3.7e+02 Score=25.37 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=14.6
Q ss_pred hhHhHHHHHHHHHHhhhccc
Q 019247 290 TYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 290 ~~~~G~~li~~g~~l~~~~~ 309 (344)
...++.+++++.++++...+
T Consensus 185 yF~~s~~~~llC~i~y~~l~ 204 (406)
T KOG1479|consen 185 YFITSTVILLLCFVLYLVLP 204 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 46677888888888887433
No 156
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=36.32 E-value=1.4e+02 Score=24.06 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=43.9
Q ss_pred HHHHHHhcccchHHHHHHHHH-------HhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 019247 125 VFTWVFLGTRYSVWQLFGASL-------CVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKK 195 (344)
Q Consensus 125 lla~l~l~e~~~~~~~~~~~l-------~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~ 195 (344)
+....+.|..++..+..|+.+ +++|+.++...+ +.+....+..++.+++.+++..++.....++
T Consensus 87 f~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-------~~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 87 FTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-------GHNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-------hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 445566778888888888775 466777765532 2445667788888888888887776555444
No 157
>PF15102 TMEM154: TMEM154 protein family
Probab=36.15 E-value=43 Score=26.43 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHhhhccccCCC
Q 019247 292 YLAFAAVLIGLIIYSTTAKDLL 313 (344)
Q Consensus 292 ~~G~~li~~g~~l~~~~~~~~~ 313 (344)
+++.++++..++++.+.+|++.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3344445555666655544443
No 158
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.49 E-value=3.3e+02 Score=25.96 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhH-HHHHHHHHhcccchHHH
Q 019247 61 YLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPC-AIVFTWVFLGTRYSVWQ 139 (344)
Q Consensus 61 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~-~~lla~l~l~e~~~~~~ 139 (344)
.+++.-++..+++-..++.+-++.+|++.|+..+....+...=-+|.+-..+-++-+...+. ...-..-++|.+-...-
T Consensus 303 LFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~ 382 (430)
T PF06123_consen 303 LFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLI 382 (430)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHh
Q 019247 140 LFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFL 192 (344)
Q Consensus 140 ~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~ 192 (344)
..++..++-|+..... +..+...+.|.+..+ +.-|+-...+||.
T Consensus 383 ~~~~L~~LY~~Ly~lL------q~EdyALL~GSl~LF---~iLa~vM~~TRki 426 (430)
T PF06123_consen 383 FAGLLAALYGFLYVLL------QSEDYALLMGSLLLF---IILALVMYLTRKI 426 (430)
T ss_pred HHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHH---HHHHHHHheeecc
No 159
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=35.45 E-value=2.5e+02 Score=23.03 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=11.9
Q ss_pred hcCchhH-HHHHHHHHhcccchH
Q 019247 116 DCCAIPC-AIVFTWVFLGTRYSV 137 (344)
Q Consensus 116 ~~~~p~~-~~lla~l~l~e~~~~ 137 (344)
.+..|+. .+++..++.++|...
T Consensus 64 ~~~~P~a~~~~l~~~l~~~~~ai 86 (194)
T PF07698_consen 64 PYLIPVAAAAMLLTILIDPRLAI 86 (194)
T ss_pred hhhhHHHHHHHHHHHHhcchHHH
Confidence 3344444 445555677776654
No 160
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=34.94 E-value=45 Score=25.87 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019247 260 GATMLILSVLTSDMWAVILRIFC 282 (344)
Q Consensus 260 ~a~~~~~~~~~~p~~~~i~~~~~ 282 (344)
.....+.+.+.-|++..+.+.++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777766655
No 161
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=34.24 E-value=3.1e+02 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 019247 169 LLGDILVIAGAIFFAMSYVGEEFLVKK 195 (344)
Q Consensus 169 ~~G~~l~l~~~~~~a~~~v~~~~~~~~ 195 (344)
........++.+.++.+..+..+..++
T Consensus 170 ~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 170 ALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888887665555
No 162
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.20 E-value=38 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccchhhHhHHHHHHHHHHhhhcccc
Q 019247 286 QVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 286 ~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
..++..++|..++++|..++..+..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999976443
No 163
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.48 E-value=60 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=15.1
Q ss_pred hHhHHHHHHHHHHhhhccccCC
Q 019247 291 YYLAFAAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 291 ~~~G~~li~~g~~l~~~~~~~~ 312 (344)
-++++.++++|.++|....+++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567777788888887655544
No 164
>PF14851 FAM176: FAM176 family
Probab=33.25 E-value=2.5e+02 Score=22.44 Aligned_cols=8 Identities=0% Similarity=0.185 Sum_probs=3.0
Q ss_pred cccchhhH
Q 019247 285 QQVNWTYY 292 (344)
Q Consensus 285 e~~~~~~~ 292 (344)
|++-..++
T Consensus 20 E~~aLYFv 27 (153)
T PF14851_consen 20 ERFALYFV 27 (153)
T ss_pred HHHHHHHH
Confidence 33333333
No 165
>TIGR00893 2A0114 d-galactonate transporter.
Probab=30.30 E-value=4e+02 Score=23.78 Aligned_cols=8 Identities=0% Similarity=-0.645 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 019247 186 YVGEEFLV 193 (344)
Q Consensus 186 ~v~~~~~~ 193 (344)
..+.+|..
T Consensus 50 g~l~d~~g 57 (399)
T TIGR00893 50 GWLLDRFG 57 (399)
T ss_pred HHHHHhcC
Confidence 33444443
No 166
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=30.27 E-value=62 Score=26.93 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=9.6
Q ss_pred hhHhHHHHHH-HHHHhhhccc
Q 019247 290 TYYLAFAAVL-IGLIIYSTTA 309 (344)
Q Consensus 290 ~~~~G~~li~-~g~~l~~~~~ 309 (344)
...+|.++++ .|+++.....
T Consensus 125 la~~gg~l~~~agvl~~~~~~ 145 (189)
T PF09534_consen 125 LALAGGVLALAAGVLLARRGR 145 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 3445554444 4555554433
No 167
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=30.10 E-value=2.4e+02 Score=21.16 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=23.4
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019247 9 SCWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTA 43 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (344)
++...+++.+++..+..+.|.++++.+....+...
T Consensus 12 ~~~~~~~~~~~~~~k~yviGFiLSiiLT~I~F~~V 46 (110)
T TIGR02908 12 SDLEFQKAKNAEEMKKQIVTFALMIFLTLIAFFAV 46 (110)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667778888888888777765554
No 168
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.56 E-value=50 Score=29.18 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=19.1
Q ss_pred cchhhHhHHHHHHHHHHhhhccc
Q 019247 287 VNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 287 ~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
+|..|+++..+++.|+.+....+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988775443
No 169
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.40 E-value=1.3e+02 Score=24.92 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHH-HHHHHHHHhhh
Q 019247 261 ATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAF-AAVLIGLIIYS 306 (344)
Q Consensus 261 a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~-~li~~g~~l~~ 306 (344)
+...+......|+++...+..+=+-.-.+.+|+|. .+++.|+.+..
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777765445567787774 45566776664
No 170
>PF15471 TMEM171: Transmembrane protein family 171
Probab=29.20 E-value=61 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.2
Q ss_pred hhhHhHHHHHHHHHHhhhccc
Q 019247 289 WTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 289 ~~~~~G~~li~~g~~l~~~~~ 309 (344)
..|+.|-++++.|+.+.....
T Consensus 161 slQImGPlIVl~GLCFFVVAH 181 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAH 181 (319)
T ss_pred ehhhhhhHHHHHhhhhhheee
Confidence 479999999999988776544
No 171
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=29.15 E-value=21 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=14.4
Q ss_pred chhhHhHHHHHHHHHHhhhc
Q 019247 288 NWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 288 ~~~~~~G~~li~~g~~l~~~ 307 (344)
+...++|..+.++|.++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888777764
No 172
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=29.06 E-value=1.9e+02 Score=24.01 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CchhhHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019247 1 MNLMNAIISCWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL 79 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~ 79 (344)
|-.|..-....++-++++...|+.++... .+.++|...++++.....+. +|..--..-..++++.+..-.+.+++..
T Consensus 141 my~my~y~yr~~ad~sqr~~~~K~~lv~~-~sm~lWi~v~i~t~~lPtsl-N~~L~pi~l~IiGav~lalRfylkkk~N 217 (226)
T COG4858 141 MYIMYYYAYRMRADNSQRPGTWKYLLVAV-LSMLLWIAVMIATVFLPTSL-NPQLPPIALTIIGAVILALRFYLKKKKN 217 (226)
T ss_pred HHHHHHHHHHhhcccccCCchHHHHHHHH-HHHHHHHHHHHHHhhCCCcC-CcCCchHHHHHHHHHHHHHHHHHHHhhc
No 173
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=29.02 E-value=1e+02 Score=24.42 Aligned_cols=30 Identities=3% Similarity=0.068 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 019247 165 GSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (344)
Q Consensus 165 ~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~ 194 (344)
+.+.....+..+.+++.|.-|...+||..+
T Consensus 116 d~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 116 DAEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 344567888899999999999999988643
No 174
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=28.81 E-value=25 Score=32.39 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=13.0
Q ss_pred HHHHHHHHhcccchHHHHHH
Q 019247 123 AIVFTWVFLGTRYSVWQLFG 142 (344)
Q Consensus 123 ~~lla~l~l~e~~~~~~~~~ 142 (344)
...+-+++.++|.|+..-.-
T Consensus 10 i~~fm~Lim~kk~sp~iAli 29 (433)
T COG2851 10 IIVFMWLIMTKKLSPIIALI 29 (433)
T ss_pred HHHHHHHHHhcccchHHHHH
Confidence 34556677788888765443
No 175
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=28.56 E-value=1.1e+02 Score=24.49 Aligned_cols=71 Identities=10% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHhhhceeeeecccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHH
Q 019247 143 ASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI---DRVEVVCMIGVYGLLVS 213 (344)
Q Consensus 143 ~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~ 213 (344)
++.++.|.=++..++--++.........|..+.+.+.+..+......--..++. --.++++|.-+.+..+.
T Consensus 95 VV~AIFGLElLmvSQvcEd~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCeFtAsFLf 168 (184)
T PF15108_consen 95 VVVAIFGLELLMVSQVCEDAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCEFTASFLF 168 (184)
T ss_pred HHHHHHhHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 334444544444433212223344555777777777666555443333333332 35677888777666655
No 176
>PRK11212 hypothetical protein; Provisional
Probab=28.44 E-value=3e+02 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=22.1
Q ss_pred hhhHHHhhcccccchhHHHHHHHHHHHHH
Q 019247 3 LMNAIISCWSGRSQMALRTLYLLLLGQLV 31 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (344)
+.+|++++--|++..||-.+.|.+...+.
T Consensus 54 l~tDIl~EvyG~k~Ar~~V~~Gf~~~i~~ 82 (210)
T PRK11212 54 LATDLTVRIFGAPLARRIIFAVMLPALLI 82 (210)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 35788899999888888888777765543
No 177
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.42 E-value=1.5e+02 Score=21.67 Aligned_cols=13 Identities=8% Similarity=0.629 Sum_probs=6.3
Q ss_pred chhhHhHHHHHHH
Q 019247 288 NWTYYLAFAAVLI 300 (344)
Q Consensus 288 ~~~~~~G~~li~~ 300 (344)
+|..++|.++..+
T Consensus 16 sW~~LVGVv~~al 28 (102)
T PF15176_consen 16 SWPFLVGVVVTAL 28 (102)
T ss_pred ccHhHHHHHHHHH
Confidence 3445555544443
No 178
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=28.38 E-value=96 Score=29.52 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=20.3
Q ss_pred ccccchhhHhHHHHHHHHHHhhhcccc
Q 019247 284 HQQVNWTYYLAFAAVLIGLIIYSTTAK 310 (344)
Q Consensus 284 ~e~~~~~~~~G~~li~~g~~l~~~~~~ 310 (344)
+..-++..++|.++.++.++....+..
T Consensus 280 ~~~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 280 GSWNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccccc
Confidence 344567789999999999888876554
No 179
>PRK11715 inner membrane protein; Provisional
Probab=27.73 E-value=5.5e+02 Score=24.57 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIILSFVGNAASSFMFY 249 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (344)
.|+++..+.-+.+-+.-++.| .+.||.+....-.......+ +...+.|+-.+ ...|+.-.+.++.....|
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---~~iHpiQYlLVGlAl~lFYL-LLLSlSEHigF------~~AYliAa~a~v~li~~Y 375 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---LRIHPVQYLLVGLALVLFYL-LLLSLSEHIGF------TLAYLIAALACVLLIGFY 375 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---ceecHHHHHHHHHHHHHHHH-HHHHHHhhhch------HHHHHHHHHHHHHHHHHH
Confidence 566665544444444333333 34688887765333333333 34444443322 122322222223333444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhh
Q 019247 250 TLVPFVLKLSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 306 (344)
Q Consensus 250 ~~~~~~l~~~~a~~~~~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 306 (344)
......-++.+....+. +.-+.+.+.+.+- -|......-...++++.+++++.
T Consensus 376 ~~~vl~~~k~g~~~~~~---L~~LYg~Ly~lLq-~EDyALL~GSllLF~~La~vM~~ 428 (436)
T PRK11715 376 LSAVLRSWKRGLLFAAA---LAALYGVLYGLLQ-SEDYALLLGSLLLFAVLALVMFL 428 (436)
T ss_pred HHHHHhcchHHHHHHHH---HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhe
Confidence 44222223333333332 3445565655544 44444444444444444555543
No 180
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.57 E-value=92 Score=19.66 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=6.2
Q ss_pred HHHHHHHhhhccc
Q 019247 297 AVLIGLIIYSTTA 309 (344)
Q Consensus 297 li~~g~~l~~~~~ 309 (344)
+++.|+.+....+
T Consensus 13 ~~lLg~~I~~~~K 25 (50)
T PF12606_consen 13 MGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHhh
Confidence 3444555555443
No 181
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.55 E-value=8.2e+02 Score=26.21 Aligned_cols=23 Identities=9% Similarity=-0.159 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Q 019247 171 GDILVIAGAIFFAMSYVGEEFLV 193 (344)
Q Consensus 171 G~~l~l~~~~~~a~~~v~~~~~~ 193 (344)
..++++...+...+...+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~~~ 93 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRKLL 93 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445544444444444555543
No 182
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.23 E-value=1.5e+02 Score=22.31 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHHhhhceeeee
Q 019247 132 GTRYSVWQLFGASLCVLGLGLMLL 155 (344)
Q Consensus 132 ~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (344)
+.|++..+..++.+.++|.+++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888889999999998887765
No 183
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.12 E-value=6.4e+02 Score=24.50 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=10.9
Q ss_pred HHHHHHHHHH--HHHhccccchhhH
Q 019247 270 TSDMWAVILR--IFCYHQQVNWTYY 292 (344)
Q Consensus 270 ~~p~~~~i~~--~~~~~e~~~~~~~ 292 (344)
.+-+...+.+ +...++.++...+
T Consensus 412 ~~w~~~fiv~~~fp~l~~~~g~~~f 436 (485)
T KOG0569|consen 412 VNWLSNFIVGFAFPPLQNVIGPYVF 436 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3344444443 4445666665433
No 184
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=25.05 E-value=6.1e+02 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=8.6
Q ss_pred hHhHHHHHHHHHHhhh
Q 019247 291 YYLAFAAVLIGLIIYS 306 (344)
Q Consensus 291 ~~~G~~li~~g~~l~~ 306 (344)
..++++++++.++.+.
T Consensus 178 F~~a~~v~l~~i~~~~ 193 (437)
T TIGR00939 178 FGTPCVVQLICIVCYL 193 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555553
No 185
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.90 E-value=3.1e+02 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhc
Q 019247 266 LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 307 (344)
Q Consensus 266 ~~~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 307 (344)
...+.-|+.-.++|+..-..-.......++.-.++|+++-.+
T Consensus 104 ~~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~l~g~~ 145 (311)
T COG3366 104 AFTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGVLYGKI 145 (311)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777778887777777778888889999999855443
No 186
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.46 E-value=1e+02 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019247 262 TMLILSVLTSDMWAVILRIF 281 (344)
Q Consensus 262 ~~~~~~~~~~p~~~~i~~~~ 281 (344)
...+.+.|+-|+++.+.+..
T Consensus 75 lkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554433
No 187
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=23.28 E-value=3.2e+02 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 019247 24 LLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVL 59 (344)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~ 59 (344)
++.+++++.+..+...-.+..+...+..+|+..+|.
T Consensus 304 ~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~ 339 (356)
T PRK15071 304 RVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALL 339 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 344444444555555555555555544455444443
No 188
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.62 E-value=92 Score=24.55 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=19.4
Q ss_pred hhhccchhHHHHhhcCchhHHHHHHHHH
Q 019247 103 AFQFTSISSVTLLDCCAIPCAIVFTWVF 130 (344)
Q Consensus 103 al~~~~~~~~~~l~~~~p~~~~lla~l~ 130 (344)
++.--+.-..+.+.+..|+++.+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777888899888887754
No 189
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.59 E-value=2.6e+02 Score=23.38 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHH
Q 019247 82 SWYWYLLLGFVDVQG 96 (344)
Q Consensus 82 ~~~~~~~~g~~~~~~ 96 (344)
+++.++++|++..+.
T Consensus 179 ~~~~~iiig~i~~~~ 193 (206)
T PF06570_consen 179 PPWVYIIIGVIAFAL 193 (206)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345666677665555
No 190
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=22.06 E-value=4.8e+02 Score=21.90 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=25.2
Q ss_pred hhHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 019247 4 MNAIISCWSGRSQMALRTLYLLLLGQLVSFSLALS 38 (344)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (344)
.++.+++--|++..+|-.+.+.+...+.+++.+..
T Consensus 45 ~~Dii~E~yG~~~A~~~V~~gf~~~i~~~~~~~~~ 79 (202)
T TIGR00697 45 ATDVLREIYGKKDARKAIFVGFISALLFSVLTQLH 79 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777777777766666655544
No 191
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=22.02 E-value=5.6e+02 Score=22.73 Aligned_cols=45 Identities=7% Similarity=-0.185 Sum_probs=19.8
Q ss_pred chhHHHHhhcCchhH-HHHHHHHHhcccchHHHHHHHHHHhhhcee
Q 019247 108 SISSVTLLDCCAIPC-AIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (344)
Q Consensus 108 ~~~~~~~l~~~~p~~-~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l 152 (344)
|.-..+.+..+.-++ .+++.+-...=|.|.+---.+..+..|+.+
T Consensus 144 pGIv~qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~ 189 (274)
T PF12811_consen 144 PGIVFQAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIAL 189 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHH
Confidence 333444444444444 444433333335555544444445555543
No 192
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=21.91 E-value=5.7e+02 Score=22.73 Aligned_cols=60 Identities=10% Similarity=0.315 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHHHHHHHHHH---HhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHH
Q 019247 81 VSWYWYLLLGFVDVQGNFLFN---KAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLF 141 (344)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~~---~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~ 141 (344)
++.+..+.+|+++...-++|. .-++|.+.++..+....-|+.+... +.......++..+.
T Consensus 106 ~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~-~yvq~~~~~~~~ll 168 (284)
T TIGR00751 106 SDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGT-QYLQAHRVDWVGIL 168 (284)
T ss_pred hhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHH-HHHhcCCCCHHHHH
Confidence 334456677777666655555 4788888888888887777776553 33445556655444
No 193
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=21.79 E-value=5.7e+02 Score=24.60 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhcCCChHH
Q 019247 183 AMSYVGEEFLVKKIDRVE 200 (344)
Q Consensus 183 a~~~v~~~~~~~~~~~~~ 200 (344)
+.-..+.|+..++..+..
T Consensus 102 ~~v~~l~k~l~~~~~~~I 119 (465)
T PF03606_consen 102 ALVNLLIKPLKGKKNPLI 119 (465)
T ss_pred HHHHHHHHHhcCCcchhH
Confidence 444455566655544443
No 194
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=21.65 E-value=3.6e+02 Score=20.37 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhc
Q 019247 62 LSLALAYGGILLYRR 76 (344)
Q Consensus 62 ~~~~l~l~~~~~~~~ 76 (344)
-+-++++..+.++++
T Consensus 40 PlIaLvLavy~LyQ~ 54 (117)
T PF07226_consen 40 PLIALVLAVYCLYQR 54 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666777654
No 195
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=21.53 E-value=5.7e+02 Score=22.59 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=13.2
Q ss_pred HHHhcc---ccchhhHhHHHHHHH
Q 019247 280 IFCYHQ---QVNWTYYLAFAAVLI 300 (344)
Q Consensus 280 ~~~~~e---~~~~~~~~G~~li~~ 300 (344)
..+||+ .-++.+++|-.++..
T Consensus 87 L~lfgri~~~~pl~e~Lg~vivl~ 110 (271)
T TIGR02587 87 LWLFGIITPETSLKEIVGKVAFQG 110 (271)
T ss_pred HHHHccCCCCCCHHHHHHHHHHHh
Confidence 345566 346778888777653
No 196
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=20.08 E-value=3.2e+02 Score=26.21 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=10.8
Q ss_pred HHHHHHHHhcccchH
Q 019247 123 AIVFTWVFLGTRYSV 137 (344)
Q Consensus 123 ~~lla~l~l~e~~~~ 137 (344)
..++..++++-|...
T Consensus 7 ~~~l~~i~~g~r~gg 21 (443)
T PRK12489 7 LILLICLFLGARYGG 21 (443)
T ss_pred HHHHHHHHHhhhhhh
Confidence 456677888888765
Done!