Query 019247
Match_columns 344
No_of_seqs 181 out of 1793
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 13:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 2.6E-10 8.7E-15 88.3 8.6 67 243-309 38-105 (137)
2 3b5d_A Multidrug transporter E 98.7 4.4E-07 1.5E-11 67.6 13.9 67 243-309 38-105 (110)
3 3b5d_A Multidrug transporter E 98.4 1.6E-06 5.4E-11 64.6 9.9 69 88-156 34-104 (110)
4 2i68_A Protein EMRE; transmemb 98.3 6.8E-07 2.3E-11 69.0 5.2 70 88-157 34-105 (137)
5 3l1l_A Arginine/agmatine antip 47.8 47 0.0016 29.9 7.5 25 289-313 408-432 (445)
6 3rko_J NADH-quinone oxidoreduc 42.6 62 0.0021 25.6 6.3 33 277-309 128-162 (184)
7 2l2t_A Receptor tyrosine-prote 36.1 35 0.0012 20.0 2.9 17 296-312 24-40 (44)
8 2ks1_B Epidermal growth factor 35.2 35 0.0012 20.0 2.8 15 296-310 25-39 (44)
9 3rlf_F Maltose transport syste 21.0 3.8E+02 0.013 24.8 8.7 82 16-109 9-94 (514)
10 2zxe_G FXYD10, phospholemman-l 17.5 86 0.0029 20.5 2.3 17 292-308 25-41 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.10 E-value=2.6e-10 Score=88.31 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~-~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++.+++|.++.+++++.++.++..+ ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5677889999999999999999888 799999999999999999999999999999999999998654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.73 E-value=4.4e-07 Score=67.60 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhhHhHHHHHHHHHHhhhccc
Q 019247 243 ASSFMFYTLVPFVLKLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 309 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~a~~~~~~-~~~~p~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 309 (344)
++.+.++.++.+++++.+...+-.+ ..+.|+.+.+++++++||++++.+++|..+|++|+++.+..+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5567789999999999999999877 789999999999999999999999999999999999997643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=1.6e-06 Score=64.58 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=59.8
Q ss_pred HHHHHHHHH-HHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeec
Q 019247 88 LLGFVDVQG-NFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (344)
Q Consensus 88 ~~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (344)
+.+.+.... .+++..++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.+.+.|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 444444444 7778899999999999888 79999999999999999999999999999999999988664
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.30 E-value=6.8e-07 Score=69.03 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=49.4
Q ss_pred HHHHHHHHH-HHHHHHhhhccchhHHHHh-hcCchhHHHHHHHHHhcccchHHHHHHHHHHhhhceeeeecc
Q 019247 88 LLGFVDVQG-NFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (344)
Q Consensus 88 ~~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (344)
+.+++.... .+++..++++.+++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445444444 7788899999999988888 899999999999999999999999999999999999986543
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=47.83 E-value=47 Score=29.88 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=17.8
Q ss_pred hhhHhHHHHHHHHHHhhhccccCCC
Q 019247 289 WTYYLAFAAVLIGLIIYSTTAKDLL 313 (344)
Q Consensus 289 ~~~~~G~~li~~g~~l~~~~~~~~~ 313 (344)
...+.|...++.|+.++...+++++
T Consensus 408 ~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 408 KEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3456688888999988876655443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=42.57 E-value=62 Score=25.61 Aligned_cols=33 Identities=6% Similarity=-0.075 Sum_probs=23.4
Q ss_pred HHHHHHhccccchhhHhHHHHHH--HHHHhhhccc
Q 019247 277 ILRIFCYHQQVNWTYYLAFAAVL--IGLIIYSTTA 309 (344)
Q Consensus 277 i~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 309 (344)
-+|..++++..-+.+..+..+.+ +|.+...+++
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57777888888889999977754 3555555433
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.11 E-value=35 Score=20.03 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhccccCC
Q 019247 296 AAVLIGLIIYSTTAKDL 312 (344)
Q Consensus 296 ~li~~g~~l~~~~~~~~ 312 (344)
+++..+.+++.++++++
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34444445554444433
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.22 E-value=35 Score=20.05 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhcccc
Q 019247 296 AAVLIGLIIYSTTAK 310 (344)
Q Consensus 296 ~li~~g~~l~~~~~~ 310 (344)
+++..+.+++.++++
T Consensus 25 ~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 25 LVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhH
Confidence 334444445544443
No 9
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=21.03 E-value=3.8e+02 Score=24.83 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH
Q 019247 16 QMALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQ 95 (344)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 95 (344)
.++++..|-.+++++.++..|+. ..+..++. +.+...-..+..+.. +.+. .+|...++|+..|+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~--~~~~---~~~~~~~~y~~p~~~~~~ 76 (514)
T 3rlf_F 9 WWQSDALKWSVLGLLGLLVGYLV----VLMYAQGE---YLFAITTLILSSAGL--YIFA---NRKAYAWRYVYPGMAGMG 76 (514)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHTH----HHHHTTTC---HHHHHHHHHHHHHHH--HHHH---CGGGCTHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHH----HHHHHCcc---HHHHHHHHHHHHHHe--EEEE---CCCcccHHHHHHHHHHHH
Confidence 34445667777777776666554 23333333 222221111222211 1211 223345678888877655
Q ss_pred H----HHHHHHhhhccch
Q 019247 96 G----NFLFNKAFQFTSI 109 (344)
Q Consensus 96 ~----~~~~~~al~~~~~ 109 (344)
. ...+..++.+++-
T Consensus 77 ~~~~~~~~~t~~~~ftny 94 (514)
T 3rlf_F 77 LFVLFPLVCTIAIAFTNY 94 (514)
T ss_dssp HHTHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHheEeeeeecc
Confidence 5 2334455555544
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=17.52 E-value=86 Score=20.53 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHhhhcc
Q 019247 292 YLAFAAVLIGLIIYSTT 308 (344)
Q Consensus 292 ~~G~~li~~g~~l~~~~ 308 (344)
+++.++.+.|+++....
T Consensus 25 ifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 44555666677766543
Done!