Query 019247
Match_columns 344
No_of_seqs 181 out of 1793
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 13:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019247.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019247hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 60.0 42 0.0031 27.4 16.3 17 291-307 187-203 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.4 1.2E+02 0.0091 23.1 6.3 60 85-148 4-63 (248)
3 d1pv7a_ f.38.1.2 (A:) Lactose 17.0 1.6E+02 0.011 22.8 7.2 16 180-195 58-73 (417)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 16.7 56 0.0041 15.1 3.0 18 170-187 3-20 (27)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 9.2 1.1E+02 0.0077 18.7 2.5 34 280-313 18-51 (82)
6 d1q90a3 f.23.23.1 (A:248-292) 8.5 1.6E+02 0.012 15.6 2.9 29 168-196 4-32 (45)
7 d1pv7a_ f.38.1.2 (A:) Lactose 6.4 4.9E+02 0.036 19.4 10.3 19 20-38 7-25 (417)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.2 5.1E+02 0.037 19.3 9.4 32 80-111 49-84 (248)
9 d1vf5c3 f.23.23.1 (C:250-286) 5.3 2.3E+02 0.017 14.4 3.2 30 167-196 4-33 (37)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 5.1 1.5E+02 0.011 21.6 2.0 31 273-303 77-107 (199)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=60.03 E-value=42 Score=27.38 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=7.7
Q ss_pred hHhHHHHHHHHHHhhhc
Q 019247 291 YYLAFAAVLIGLIIYST 307 (344)
Q Consensus 291 ~~~G~~li~~g~~l~~~ 307 (344)
...+...++.+++....
T Consensus 187 ~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 33444444445544443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.41 E-value=1.2e+02 Score=23.11 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHhhcCchhHHHHHHHHHhcccchHHHHHHHHHHhh
Q 019247 85 WYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVL 148 (344)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~ 148 (344)
++.++|+++...-+.....+...+...+.++ .+.+.++-++++.+|.-+.+++-=.+++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~kyi~PG~~~l 63 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWRYVYPGMAGM 63 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCccceehhhhHHHHH
Confidence 4555666665555554555554444443332 23355556667777776666664443333
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.98 E-value=1.6e+02 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhcC
Q 019247 180 IFFAMSYVGEEFLVKK 195 (344)
Q Consensus 180 ~~~a~~~v~~~~~~~~ 195 (344)
+..-....+.+|..+|
T Consensus 58 i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 58 LFQPLFGLLSDKLGLR 73 (417)
T ss_dssp HTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCch
Confidence 3333444455555444
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.68 E-value=56 Score=15.06 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 019247 170 LGDILVIAGAIFFAMSYV 187 (344)
Q Consensus 170 ~G~~l~l~~~~~~a~~~v 187 (344)
.|....-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777888888888754
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.16 E-value=1.1e+02 Score=18.71 Aligned_cols=34 Identities=9% Similarity=-0.094 Sum_probs=23.8
Q ss_pred HHHhccccchhhHhHHHHHHHHHHhhhccccCCC
Q 019247 280 IFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLL 313 (344)
Q Consensus 280 ~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 313 (344)
|++..-++....+.|.+++-.|+..-.....+++
T Consensus 18 WvIHsiTIPslFiaGwlFVstGLAYdvFGtPrPn 51 (82)
T d2axte1 18 WVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPD 51 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHTTCCCTT
T ss_pred EEEEeecccHHHHhhhhheecccchhhcCCCCcc
Confidence 4444445566678888999999998887665443
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.46 E-value=1.6e+02 Score=15.65 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 019247 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKI 196 (344)
Q Consensus 168 ~~~G~~l~l~~~~~~a~~~v~~~~~~~~~ 196 (344)
...|.+..+++.+.--+..++-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777888877766553
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.45 E-value=4.9e+02 Score=19.41 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019247 20 RTLYLLLLGQLVSFSLALS 38 (344)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (344)
|+...+....++..+.++.
T Consensus 7 ~~~~~l~~~~f~~~~~~~~ 25 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGA 25 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3333333444443444443
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.16 E-value=5.1e+02 Score=19.32 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHHHHHH----HHHHHHhhhccchhH
Q 019247 80 QVSWYWYLLLGFVDVQG----NFLFNKAFQFTSISS 111 (344)
Q Consensus 80 ~~~~~~~~~~g~~~~~~----~~~~~~al~~~~~~~ 111 (344)
|...++++..|++.+.. ...+...+.+++-+.
T Consensus 49 r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~t 84 (248)
T d2r6gf1 49 KAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSS 84 (248)
T ss_dssp CCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSS
T ss_pred CccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCC
Confidence 34456788888776555 334556666665543
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.35 E-value=2.3e+02 Score=14.38 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=18.8
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 019247 167 RPLLGDILVIAGAIFFAMSYVGEEFLVKKI 196 (344)
Q Consensus 167 ~~~~G~~l~l~~~~~~a~~~v~~~~~~~~~ 196 (344)
....|.+..+.+...--+..++-||-.++.
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345676666666666666667766655543
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=1.5e+02 Score=21.55 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhccccchhhHhHHHHHHHHHH
Q 019247 273 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLI 303 (344)
Q Consensus 273 ~~~~i~~~~~~~e~~~~~~~~G~~li~~g~~ 303 (344)
+........++|.+++.....+..+.+...+
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 3344444566788888777777666665443
Done!