Query 019249
Match_columns 344
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 07:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13851 GAS: Growth-arrest sp 94.4 3.5 7.5E-05 37.2 15.7 139 189-334 27-173 (201)
2 PF04156 IncA: IncA protein; 93.9 2.5 5.5E-05 36.0 13.1 73 220-295 84-156 (191)
3 cd07597 BAR_SNX8 The Bin/Amphi 93.6 5.2 0.00011 36.6 15.5 146 146-309 28-178 (246)
4 TIGR02169 SMC_prok_A chromosom 93.5 11 0.00024 39.2 21.8 20 67-86 558-579 (1164)
5 PRK02224 chromosome segregatio 91.9 12 0.00025 38.9 17.0 121 192-314 183-303 (880)
6 PRK11637 AmiB activator; Provi 91.4 14 0.00031 35.7 16.7 50 278-327 193-242 (428)
7 TIGR02168 SMC_prok_B chromosom 89.2 30 0.00064 35.8 21.8 15 244-258 802-816 (1179)
8 PRK02224 chromosome segregatio 87.0 42 0.00091 35.0 29.4 53 26-78 378-440 (880)
9 PF05667 DUF812: Protein of un 86.8 28 0.0006 36.6 15.3 121 189-312 321-448 (594)
10 COG1614 CdhC CO dehydrogenase/ 84.9 0.42 9.1E-06 48.4 1.2 29 85-113 271-314 (470)
11 PF07888 CALCOCO1: Calcium bin 82.3 72 0.0016 33.8 17.3 33 219-251 215-247 (546)
12 PRK11637 AmiB activator; Provi 81.9 53 0.0011 32.0 17.7 27 295-321 224-250 (428)
13 PF06008 Laminin_I: Laminin Do 81.1 44 0.00095 30.5 19.6 86 244-329 159-252 (264)
14 PF07888 CALCOCO1: Calcium bin 78.9 93 0.002 33.0 16.4 8 102-109 93-100 (546)
15 PF10174 Cast: RIM-binding pro 77.5 1.2E+02 0.0025 33.3 21.7 185 133-335 225-423 (775)
16 PF05529 Bap31: B-cell recepto 77.5 9.9 0.00021 33.0 6.9 67 258-337 121-187 (192)
17 COG1196 Smc Chromosome segrega 76.7 1.3E+02 0.0028 33.4 20.5 23 251-273 346-368 (1163)
18 COG1196 Smc Chromosome segrega 74.7 1.4E+02 0.0031 33.0 23.1 12 51-62 550-561 (1163)
19 PF02208 Sorb: Sorbin homologo 74.4 1.7 3.8E-05 32.8 1.3 15 97-111 5-19 (47)
20 TIGR02132 phaR_Bmeg polyhydrox 74.3 46 0.00099 31.3 10.5 97 146-269 38-138 (189)
21 PF04048 Sec8_exocyst: Sec8 ex 73.7 7 0.00015 33.1 4.9 59 25-87 79-137 (142)
22 PF08317 Spc7: Spc7 kinetochor 71.6 95 0.0021 29.6 13.3 48 26-74 83-135 (325)
23 PF10473 CENP-F_leu_zip: Leuci 71.1 72 0.0016 28.2 10.6 89 241-329 6-98 (140)
24 COG1792 MreC Cell shape-determ 69.4 17 0.00038 34.4 6.9 50 268-325 62-111 (284)
25 TIGR00606 rad50 rad50. This fa 68.9 2E+02 0.0044 32.3 25.0 30 54-83 643-672 (1311)
26 TIGR01843 type_I_hlyD type I s 67.6 1E+02 0.0022 28.4 14.9 62 244-305 171-232 (423)
27 PRK04863 mukB cell division pr 67.6 1.7E+02 0.0038 34.2 15.3 55 287-341 373-437 (1486)
28 PF09728 Taxilin: Myosin-like 67.4 1.2E+02 0.0027 29.2 15.8 137 191-337 162-305 (309)
29 PF09787 Golgin_A5: Golgin sub 66.7 1.5E+02 0.0033 30.0 13.2 130 187-328 286-430 (511)
30 PRK00888 ftsB cell division pr 66.6 27 0.00058 28.9 6.7 54 212-271 20-75 (105)
31 PF07200 Mod_r: Modifier of ru 66.5 52 0.0011 27.4 8.5 50 288-338 67-116 (150)
32 PHA02562 46 endonuclease subun 65.4 1.4E+02 0.0031 29.2 22.5 52 29-80 192-243 (562)
33 PF14662 CCDC155: Coiled-coil 64.0 90 0.0019 29.3 10.2 48 279-326 77-124 (193)
34 KOG0980 Actin-binding protein 63.0 2.7E+02 0.0059 31.7 15.6 93 216-308 357-452 (980)
35 smart00787 Spc7 Spc7 kinetocho 62.3 1.4E+02 0.0031 29.0 11.7 83 215-300 170-256 (312)
36 TIGR01005 eps_transp_fam exopo 62.0 1.8E+02 0.0039 30.2 13.0 49 251-299 358-406 (754)
37 PF02403 Seryl_tRNA_N: Seryl-t 60.3 43 0.00094 26.4 6.6 41 304-344 67-107 (108)
38 PF08317 Spc7: Spc7 kinetochor 59.8 1.6E+02 0.0035 28.0 11.7 16 216-231 148-163 (325)
39 KOG0804 Cytoplasmic Zn-finger 59.0 1.5E+02 0.0032 31.4 11.7 86 246-335 348-445 (493)
40 PRK09039 hypothetical protein; 58.6 1.5E+02 0.0033 28.8 11.2 32 302-333 135-166 (343)
41 PRK04863 mukB cell division pr 57.9 3.8E+02 0.0081 31.6 20.6 116 156-271 309-430 (1486)
42 TIGR02809 phasin_3 phasin fami 55.9 30 0.00066 29.9 5.4 51 252-315 57-107 (110)
43 TIGR02449 conserved hypothetic 55.7 42 0.0009 26.5 5.7 60 278-337 2-61 (65)
44 PRK10884 SH3 domain-containing 54.7 45 0.00097 30.6 6.6 34 227-260 82-115 (206)
45 PRK04456 acetyl-CoA decarbonyl 54.0 5.5 0.00012 41.2 0.8 25 83-107 270-302 (463)
46 KOG0996 Structural maintenance 53.7 4.4E+02 0.0094 31.1 19.8 164 149-312 371-571 (1293)
47 PF09177 Syntaxin-6_N: Syntaxi 52.9 70 0.0015 25.3 6.7 58 148-209 40-97 (97)
48 TIGR01005 eps_transp_fam exopo 51.9 2.7E+02 0.0058 29.0 12.3 24 216-239 287-310 (754)
49 KOG0161 Myosin class II heavy 50.9 5.5E+02 0.012 31.4 28.4 164 149-312 1331-1506(1930)
50 TIGR03007 pepcterm_ChnLen poly 50.5 2.5E+02 0.0055 27.4 12.8 49 246-294 332-380 (498)
51 KOG0977 Nuclear envelope prote 50.1 3.5E+02 0.0076 28.9 18.2 50 288-337 308-361 (546)
52 PF07426 Dynactin_p22: Dynacti 50.1 84 0.0018 28.2 7.4 104 196-299 5-117 (174)
53 cd07627 BAR_Vps5p The Bin/Amph 49.8 1.9E+02 0.0042 25.8 19.3 126 145-299 9-135 (216)
54 PF07200 Mod_r: Modifier of ru 48.6 1.5E+02 0.0032 24.7 8.3 45 208-253 19-63 (150)
55 smart00338 BRLZ basic region l 48.4 25 0.00053 25.9 3.3 32 303-334 32-63 (65)
56 PF13747 DUF4164: Domain of un 48.3 50 0.0011 26.7 5.3 36 300-335 35-70 (89)
57 TIGR03017 EpsF chain length de 47.9 2.6E+02 0.0056 26.8 13.0 27 213-239 250-276 (444)
58 TIGR00316 cdhC CO dehydrogenas 47.4 8 0.00017 40.0 0.8 24 84-107 268-299 (458)
59 PF07334 IFP_35_N: Interferon- 47.1 17 0.00037 29.5 2.4 28 306-333 2-29 (76)
60 PF09726 Macoilin: Transmembra 45.7 2.6E+02 0.0056 30.2 11.4 99 222-333 543-661 (697)
61 PF05701 WEMBL: Weak chloropla 44.5 3.7E+02 0.008 27.6 21.8 50 215-264 363-412 (522)
62 PF09744 Jnk-SapK_ap_N: JNK_SA 44.0 2.4E+02 0.0051 25.2 9.4 44 255-298 22-65 (158)
63 PF13815 Dzip-like_N: Iguana/D 43.6 95 0.002 25.6 6.3 82 251-335 26-118 (118)
64 cd03571 ENTH_epsin ENTH domain 42.4 13 0.00028 31.5 1.1 61 34-109 39-99 (123)
65 PRK10884 SH3 domain-containing 42.1 2.1E+02 0.0046 26.4 8.9 19 303-321 145-163 (206)
66 PRK01156 chromosome segregatio 42.0 4.5E+02 0.0098 27.9 15.7 73 236-308 634-713 (895)
67 KOG0798 Uncharacterized conser 41.0 11 0.00025 38.1 0.7 24 85-110 289-312 (380)
68 cd04494 BRCA2DBD_OB2 BRCA2DBD_ 40.8 1.2E+02 0.0025 29.3 7.3 74 266-339 44-153 (251)
69 COG4467 Regulator of replicati 40.3 40 0.00086 29.5 3.8 37 278-318 7-43 (114)
70 PRK13169 DNA replication intia 40.3 42 0.0009 28.6 3.8 17 303-319 28-44 (110)
71 COG0419 SbcC ATPase involved i 40.0 5.1E+02 0.011 28.0 26.1 72 26-102 397-471 (908)
72 KOG4674 Uncharacterized conser 39.4 8E+02 0.017 30.1 23.1 107 222-331 1276-1387(1822)
73 PF03598 CdhC: CO dehydrogenas 39.4 12 0.00025 38.4 0.5 24 84-107 269-300 (411)
74 KOG0996 Structural maintenance 39.4 7.2E+02 0.016 29.5 19.4 176 149-327 269-463 (1293)
75 PF11932 DUF3450: Protein of u 38.8 1.6E+02 0.0034 26.8 7.5 52 284-335 43-94 (251)
76 PF13949 ALIX_LYPXL_bnd: ALIX 38.7 3E+02 0.0064 24.8 10.5 45 196-240 22-66 (296)
77 PF10805 DUF2730: Protein of u 37.9 2.3E+02 0.0049 23.3 9.0 88 250-337 5-98 (106)
78 PF05667 DUF812: Protein of un 37.4 1.3E+02 0.0029 31.7 7.7 18 75-92 138-155 (594)
79 PF13851 GAS: Growth-arrest sp 37.2 3.2E+02 0.0069 24.8 10.4 91 220-312 72-172 (201)
80 PF06156 DUF972: Protein of un 36.8 59 0.0013 27.3 4.2 39 279-317 4-42 (107)
81 PRK10803 tol-pal system protei 36.6 2.2E+02 0.0047 26.6 8.2 62 202-263 39-100 (263)
82 PF09755 DUF2046: Uncharacteri 36.3 4.6E+02 0.0099 26.3 18.2 143 160-318 26-170 (310)
83 smart00459 Sorb Sorbin homolog 35.4 20 0.00043 27.5 1.1 16 97-112 5-20 (50)
84 PRK09039 hypothetical protein; 35.4 4.3E+02 0.0094 25.8 12.6 76 188-263 80-155 (343)
85 PRK13922 rod shape-determining 35.1 2.1E+02 0.0045 26.2 7.7 34 291-324 77-113 (276)
86 PF05010 TACC: Transforming ac 34.4 3.9E+02 0.0084 24.9 14.6 28 308-335 158-185 (207)
87 COG4026 Uncharacterized protei 34.1 1.7E+02 0.0038 28.8 7.4 74 246-322 129-202 (290)
88 PF08614 ATG16: Autophagy prot 34.0 3.3E+02 0.0072 24.0 9.0 77 196-282 95-171 (194)
89 KOG0933 Structural maintenance 34.0 6.8E+02 0.015 29.3 12.6 106 224-329 787-900 (1174)
90 PF00038 Filament: Intermediat 34.0 3.7E+02 0.008 24.6 12.4 118 182-309 18-136 (312)
91 cd00176 SPEC Spectrin repeats, 33.4 2.5E+02 0.0054 22.4 13.5 35 303-337 138-172 (213)
92 PRK09841 cryptic autophosphory 33.4 6E+02 0.013 26.9 14.1 51 248-298 349-399 (726)
93 KOG0288 WD40 repeat protein Ti 33.4 4.9E+02 0.011 27.5 10.7 77 253-329 24-106 (459)
94 KOG0161 Myosin class II heavy 33.2 1E+03 0.022 29.4 20.2 110 191-300 1268-1382(1930)
95 PF04156 IncA: IncA protein; 32.8 3.1E+02 0.0068 23.4 12.4 22 275-296 129-150 (191)
96 PRK01156 chromosome segregatio 32.3 6.4E+02 0.014 26.8 15.6 27 271-297 683-709 (895)
97 KOG1962 B-cell receptor-associ 32.3 2.5E+02 0.0053 26.7 7.9 70 259-333 118-187 (216)
98 KOG0995 Centromere-associated 32.1 1.8E+02 0.0038 31.4 7.6 95 201-323 233-327 (581)
99 TIGR03017 EpsF chain length de 31.8 4.7E+02 0.01 25.1 12.9 106 191-296 256-369 (444)
100 TIGR01069 mutS2 MutS2 family p 31.7 6.8E+02 0.015 27.2 11.9 18 71-88 426-444 (771)
101 PF07544 Med9: RNA polymerase 31.6 2E+02 0.0043 22.8 6.2 49 32-80 28-82 (83)
102 KOG3208 SNARE protein GS28 [In 31.3 5E+02 0.011 25.3 9.9 28 187-214 6-34 (231)
103 PF05278 PEARLI-4: Arabidopsis 31.3 2.1E+02 0.0045 28.0 7.4 55 21-79 203-257 (269)
104 TIGR00414 serS seryl-tRNA synt 31.1 2.2E+02 0.0048 28.3 7.8 81 261-344 29-109 (418)
105 PF05325 DUF730: Protein of un 30.9 1.4E+02 0.0029 26.3 5.5 36 250-288 83-118 (122)
106 KOG3647 Predicted coiled-coil 30.8 1.1E+02 0.0023 30.8 5.5 51 24-78 146-196 (338)
107 PF04136 Sec34: Sec34-like fam 30.5 3.2E+02 0.0069 23.9 7.8 47 275-328 27-73 (157)
108 PF11598 COMP: Cartilage oligo 30.4 76 0.0017 23.6 3.4 25 214-238 12-36 (45)
109 COG2357 PpGpp synthetase catal 30.2 54 0.0012 31.3 3.2 76 21-98 16-94 (231)
110 PF00015 MCPsignal: Methyl-acc 29.3 3.3E+02 0.0072 22.6 13.9 28 206-233 82-109 (213)
111 KOG0250 DNA repair protein RAD 29.0 9.7E+02 0.021 27.9 18.6 101 218-318 317-422 (1074)
112 PF05633 DUF793: Protein of un 28.4 2.1E+02 0.0045 29.3 7.1 67 214-291 309-381 (389)
113 PF03945 Endotoxin_N: delta en 28.3 4E+02 0.0086 23.1 9.8 67 217-291 41-117 (226)
114 PRK05431 seryl-tRNA synthetase 28.1 2.3E+02 0.005 28.3 7.3 81 260-344 26-106 (425)
115 PF00261 Tropomyosin: Tropomyo 28.0 4.6E+02 0.01 23.8 17.9 189 149-337 10-223 (237)
116 PRK09529 bifunctional acetyl-C 27.9 24 0.00051 38.4 0.6 24 84-107 569-600 (711)
117 PRK11546 zraP zinc resistance 27.4 1.4E+02 0.0031 26.6 5.2 39 276-314 47-85 (143)
118 PF12329 TMF_DNA_bd: TATA elem 26.8 3.1E+02 0.0068 21.4 8.2 64 190-253 6-69 (74)
119 PF00086 Thyroglobulin_1: Thyr 26.0 49 0.0011 24.7 1.8 14 104-117 49-62 (68)
120 PF00015 MCPsignal: Methyl-acc 26.0 3.8E+02 0.0083 22.2 11.0 12 64-75 37-48 (213)
121 PF12777 MT: Microtubule-bindi 26.0 6E+02 0.013 24.4 10.9 251 27-314 52-308 (344)
122 PRK10244 anti-RssB factor; Pro 25.8 1.9E+02 0.0041 24.4 5.3 69 188-267 16-84 (88)
123 PF05600 DUF773: Protein of un 25.6 6.8E+02 0.015 26.0 10.3 122 205-337 360-486 (507)
124 PF14197 Cep57_CLD_2: Centroso 25.4 3.2E+02 0.007 21.4 6.3 54 268-321 11-64 (69)
125 PF07889 DUF1664: Protein of u 25.3 4.6E+02 0.01 22.9 8.7 17 196-212 68-84 (126)
126 KOG3564 GTPase-activating prot 25.2 4.2E+02 0.009 28.7 8.8 76 243-332 26-105 (604)
127 PF08172 CASP_C: CASP C termin 25.1 1.2E+02 0.0025 28.8 4.4 41 213-253 75-122 (248)
128 PF08614 ATG16: Autophagy prot 25.0 4.8E+02 0.01 23.0 10.5 36 223-258 94-129 (194)
129 PRK06342 transcription elongat 24.1 1.7E+02 0.0036 26.0 5.0 57 22-84 31-87 (160)
130 PF07568 HisKA_2: Histidine ki 23.8 2E+02 0.0043 22.0 4.8 44 249-292 5-54 (76)
131 PF04111 APG6: Autophagy prote 23.5 6.7E+02 0.015 24.2 9.3 119 215-337 7-125 (314)
132 KOG0018 Structural maintenance 23.2 1.1E+03 0.024 27.7 12.0 74 252-327 366-439 (1141)
133 cd07624 BAR_SNX7_30 The Bin/Am 23.0 5.4E+02 0.012 22.9 14.5 45 255-299 99-143 (200)
134 PF04253 TFR_dimer: Transferri 23.0 1.3E+02 0.0028 24.4 3.8 64 101-166 53-118 (125)
135 TIGR00219 mreC rod shape-deter 22.6 1.5E+02 0.0032 28.1 4.6 38 304-342 91-128 (283)
136 PRK03918 chromosome segregatio 22.6 9E+02 0.02 25.3 15.8 136 197-332 159-294 (880)
137 cd07612 BAR_Bin2 The Bin/Amphi 22.5 5.4E+02 0.012 24.2 8.2 75 222-296 123-210 (211)
138 PF09744 Jnk-SapK_ap_N: JNK_SA 21.6 5.9E+02 0.013 22.8 8.7 17 243-259 48-64 (158)
139 PF05266 DUF724: Protein of un 21.5 6.3E+02 0.014 23.1 9.8 81 198-281 88-185 (190)
140 PLN02320 seryl-tRNA synthetase 21.4 3.5E+02 0.0077 28.4 7.4 41 304-344 130-170 (502)
141 PF10267 Tmemb_cc2: Predicted 20.9 9.1E+02 0.02 24.7 16.6 90 223-329 260-349 (395)
142 PF10174 Cast: RIM-binding pro 20.6 1.2E+03 0.026 25.9 16.4 190 137-327 259-516 (775)
143 PF09707 Cas_Cas2CT1978: CRISP 20.4 50 0.0011 27.0 1.0 61 41-111 21-86 (86)
144 PF14716 HHH_8: Helix-hairpin- 20.3 1.1E+02 0.0025 22.7 2.8 46 57-102 9-56 (68)
145 KOG4196 bZIP transcription fac 20.2 1.3E+02 0.0029 27.0 3.6 41 290-330 74-114 (135)
146 KOG3093 5-formyltetrahydrofola 20.1 36 0.00078 32.1 0.1 26 81-106 130-155 (200)
147 PF10805 DUF2730: Protein of u 20.1 5E+02 0.011 21.3 8.9 65 223-290 34-100 (106)
148 PF11594 Med28: Mediator compl 20.1 1.1E+02 0.0024 26.3 3.0 82 147-229 4-96 (106)
No 1
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.43 E-value=3.5 Score=37.15 Aligned_cols=139 Identities=24% Similarity=0.318 Sum_probs=93.9
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHH
Q 019249 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVR 268 (344)
Q Consensus 189 Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vr 268 (344)
+-|+.-.-||+.|..+.+..++ .+.+..+.-..|++.-...++.-.+-...|+...+|+.+|++.-+.+....
T Consensus 27 ~lIksLKeei~emkk~e~~~~k-------~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEK-------LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555667777777666665 457788888888888888888888888888888888888888777777777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhh------HHHHHHHHHhh--hhhhhhcchhHHHHHHHHhhh
Q 019249 269 ETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK------EAEVQKLMEEN--VRLTALLDKKEAQLLAMNEQC 334 (344)
Q Consensus 269 eTllssekqfqtiE~lferLvakt~qLE~eK~qK------EaEVQKlMeEN--vrL~allDkKEAqL~AmnEQc 334 (344)
+.|-..+.+.+.++.-|+.+..--..|..--... .+....+..|+ --|+..|++++|||..+-..|
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7776666666666666666655555554433222 23333333333 246777899999998765433
No 2
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.86 E-value=2.5 Score=36.02 Aligned_cols=73 Identities=29% Similarity=0.414 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcc
Q 019249 220 NEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQL 295 (344)
Q Consensus 220 neMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qL 295 (344)
.+-.+++..+-.|....+++-.+++.++...+.+|..+. .-+-.+.+-+.+.+..|..+.+-|.+|.....++
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777778888999999999999999888 4445556666666666777776666666333333
No 3
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.60 E-value=5.2 Score=36.61 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHH
Q 019249 146 GAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQR 225 (344)
Q Consensus 146 ~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqr 225 (344)
..||..++.++..+.+.+|.++||---. |.+-. . +-+-..-+-+.+..+.-.. |-|+-.+.++.-
T Consensus 28 r~~I~~l~~~~~~l~~l~er~~kR~~~~----A~d~~--~-----f~~~l~~l~~~~~~~~~~~----~~~~~~~~l~~~ 92 (246)
T cd07597 28 RERIRRLLESWTKLRVLAERYEKRSQQQ----AADRA--E-----FARLLNSLGELTARLYPWA----GDSDTWGDINEG 92 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--H-----HHHHHHhhccCCCCCCCcc----CCCccHHHHHHH
Confidence 4699999999999999999999986321 11111 1 1111111111111111111 334444556655
Q ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHH-HHHHHHHHHHHHhhhhcchhhhhh--
Q 019249 226 VEDLVEETSRQR-QRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQ-FQTIERLFERLVAKTTQLEGEKMQ-- 301 (344)
Q Consensus 226 vedlv~Etsrqr-qraaenE~elsrvk~dfesLksyvssli~vreTllssekq-fqtiE~lferLvakt~qLE~eK~q-- 301 (344)
+..+-.....-- .-..+...+... =.|.||.|++-|+++|++.---+|. +-.|.+|..|.-..-..|++-+.+
T Consensus 93 l~~~s~~~~~~s~~~~~~a~~~~~~---vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~ 169 (246)
T cd07597 93 LSSLSKHFQLLSDLSEDEARAEEDG---VLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPD 169 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCC
Confidence 555543322111 111111222222 2588999999999999998866633 445666666666666666665544
Q ss_pred -hHHHHHHH
Q 019249 302 -KEAEVQKL 309 (344)
Q Consensus 302 -KEaEVQKl 309 (344)
|.+||.||
T Consensus 170 ~~~~e~ekl 178 (246)
T cd07597 170 VKGAEVDKL 178 (246)
T ss_pred CchhHHHHH
Confidence 56677663
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.47 E-value=11 Score=39.16 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=12.1
Q ss_pred HhHHHHHHHHhhh--hcccccC
Q 019249 67 KTTATLLTYLKSK--ARIMAVP 86 (344)
Q Consensus 67 KT~atLLtYLKSK--ARiMAvP 86 (344)
.|+..++.|||++ .|+-.+|
T Consensus 558 ~~a~~~i~~l~~~~~gr~tflp 579 (1164)
T TIGR02169 558 AVAKEAIELLKRRKAGRATFLP 579 (1164)
T ss_pred HHHHHHHHHHHhcCCCCeeecc
Confidence 4566778888854 2444444
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=91.88 E-value=12 Score=38.91 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=89.1
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 019249 192 RKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL 271 (344)
Q Consensus 192 ~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTl 271 (344)
+....|++.+...|++.+.- -.+.-|+.+++.+.++-.+-++.+++...-+.++..+...+..++.-...+-...+.+
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~--~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~ 260 (880)
T PRK02224 183 SDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666664322 1356788889999998888888888888888888888888888887777777777888
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhh
Q 019249 272 LSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENV 314 (344)
Q Consensus 272 lssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENv 314 (344)
-..+.+.+..+.-.+.+-.+..+++..+.+-+.++.+|..+.-
T Consensus 261 ~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~ 303 (880)
T PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG 303 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888887777888887777777777766666666543
No 6
>PRK11637 AmiB activator; Provisional
Probab=91.44 E-value=14 Score=35.74 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHH
Q 019249 278 FQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL 327 (344)
Q Consensus 278 fqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL 327 (344)
-..++.+...+..+...|+..+.++...+.+|=.+--...+.|++.+++.
T Consensus 193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~ 242 (428)
T PRK11637 193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANE 242 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666777666666666665443333444444444333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.18 E-value=30 Score=35.77 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=5.9
Q ss_pred HHHHHHHHhhHHHHH
Q 019249 244 EQELCRVKRDFESLK 258 (344)
Q Consensus 244 E~elsrvk~dfesLk 258 (344)
..++...+.++..++
T Consensus 802 ~~~l~~~~~~~~~~~ 816 (1179)
T TIGR02168 802 REALDELRAELTLLN 816 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=86.98 E-value=42 Score=34.96 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhcCh----------HHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019249 26 EMERSQFQVDVLQEKLMEVKTCIKDSE----------EDAKKELEVLWRRVKTTATLLTYLKS 78 (344)
Q Consensus 26 eme~~qSQVdvLq~rl~evKa~i~gSe----------eda~KELevL~rRVKT~atLLtYLKS 78 (344)
.++..+.++..|...+.++++.+...+ ++++.+++.|..+.....+.+.|++.
T Consensus 378 ~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 440 (880)
T PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666666554221 45566777888888888888877664
No 9
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.81 E-value=28 Score=36.62 Aligned_cols=121 Identities=18% Similarity=0.300 Sum_probs=82.8
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHH--
Q 019249 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLIS-- 266 (344)
Q Consensus 189 Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~-- 266 (344)
.+.......++.+...|++.+.=..+..+-+..+...+..+.+|+.+.+....+.|+++..-++=++-|-.--..+-.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ 400 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334556677888888888888888888889999999999999999999999999999998777766555432111111
Q ss_pred -----HHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHh
Q 019249 267 -----VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 267 -----vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeE 312 (344)
..+-+.....|++.... -|..+...|+.....++.|-++.+.+
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ 448 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQE 448 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 22334444556665554 56666666666555555555544444
No 10
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=84.94 E-value=0.42 Score=48.39 Aligned_cols=29 Identities=45% Similarity=0.959 Sum_probs=23.6
Q ss_pred cCCccccccc--------cccccccccccC-------CCCCCCC
Q 019249 85 VPDLAHTSCG--------IRQLEGVGLVDK-------NGTPLSG 113 (344)
Q Consensus 85 vP~LAhtScG--------IkqlegVG~VDk-------~G~pls~ 113 (344)
.=.++||||| |-.+||+|.|++ +|+|.|.
T Consensus 271 ~~~~PhTSCGCFeav~FYiPEvDG~G~v~R~y~getP~GipFSt 314 (470)
T COG1614 271 FFEYPHTSCGCFEAVVFYIPEVDGIGIVHREYRGETPNGIPFST 314 (470)
T ss_pred cccCCCCccceeeEEEEeccccccceeeecCcCCCCCCCCcchh
Confidence 4468999999 788999999997 4777664
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.26 E-value=72 Score=33.79 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019249 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVK 251 (344)
Q Consensus 219 LneMrqrvedlv~EtsrqrqraaenE~elsrvk 251 (344)
+.++++|+..|.++-.--.++..|+|.++.+.+
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777776666666666666666555543
No 12
>PRK11637 AmiB activator; Provisional
Probab=81.91 E-value=53 Score=31.97 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=10.4
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019249 295 LEGEKMQKEAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 295 LE~eK~qKEaEVQKlMeENvrL~allD 321 (344)
|+.++...++++.+|=.+--+|.++|+
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 13
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.09 E-value=44 Score=30.49 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=53.3
Q ss_pred HHHHHHHHhhHHHHHHHHhHH-HHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhh-----hhhh--HHHHHHHHHhhhh
Q 019249 244 EQELCRVKRDFESLKNYVSSL-ISVRETLLSSEKQFQTIERLFERLVAKTTQLEGE-----KMQK--EAEVQKLMEENVR 315 (344)
Q Consensus 244 E~elsrvk~dfesLksyvssl-i~vreTllssekqfqtiE~lferLvakt~qLE~e-----K~qK--EaEVQKlMeENvr 315 (344)
+.=|+||+..|........+| -.+++.|---+-+.+.+..+..+.+++|.+-++= +.-. +..++.|-+.+-.
T Consensus 159 ~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~ 238 (264)
T PF06008_consen 159 EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNE 238 (264)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999998888888887 4477777777777788888888877777664431 1111 2223344444555
Q ss_pred hhhhcchhHHHHHH
Q 019249 316 LTALLDKKEAQLLA 329 (344)
Q Consensus 316 L~allDkKEAqL~A 329 (344)
+...|+.-+.-|..
T Consensus 239 ~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 239 VSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444433
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.94 E-value=93 Score=33.00 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=4.9
Q ss_pred ccccCCCC
Q 019249 102 GLVDKNGT 109 (344)
Q Consensus 102 G~VDk~G~ 109 (344)
.|||.+|.
T Consensus 93 cYv~~~g~ 100 (546)
T PF07888_consen 93 CYVDQKGE 100 (546)
T ss_pred EEECCCcc
Confidence 46666665
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.49 E-value=1.2e+02 Score=33.33 Aligned_cols=185 Identities=22% Similarity=0.244 Sum_probs=110.1
Q ss_pred hhhhccCCCcccchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhhhhhhhhhhhccHHHHHhhhhhh
Q 019249 133 GISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVK--------------RVIMAESETAVEKEKVTLGQEEIRKKANQI 198 (344)
Q Consensus 133 ~~~~~~g~~~~~d~~Yv~e~LksV~mVtdvMEsLvK--------------Rvi~AESEtaveKeKv~~~~Eei~rK~~Qi 198 (344)
++...+..++.+|.. |..+=+.++-+-|=+..|-. -+-.-.|.+.-=|.|+--..=++.||...|
T Consensus 225 ~t~alq~~ie~Kd~k-i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~ 303 (775)
T PF10174_consen 225 ETEALQTVIEEKDTK-IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSEL 303 (775)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777776 55554444444444444433 344444555555666666677888899999
Q ss_pred hhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHH
Q 019249 199 ENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQF 278 (344)
Q Consensus 199 e~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqf 278 (344)
+.+..+++..+.- .++||++++-|=+...+-.+++. .+..|-+.|+.-+..--+. |-.-..|.
T Consensus 304 ~~~qt~l~~~~~~-------~~d~r~hi~~lkesl~~ke~~~~-------~Lqsdve~Lr~rle~k~~~---l~kk~~~~ 366 (775)
T PF10174_consen 304 EALQTRLETLEEQ-------DSDMRQHIEVLKESLRAKEQEAE-------MLQSDVEALRFRLEEKNSQ---LEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999887543 47899999888777766655543 3344444444333221111 11123344
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhh
Q 019249 279 QTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 279 qtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK 335 (344)
+.++.=..|+-+..+-|-..-..|+.+|..|=...-.|.-.|-.|+-||...++-++
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555555667777777766666666777777777777666554
No 16
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.45 E-value=9.9 Score=33.03 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=41.5
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 258 KNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 258 ksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
-+++..++..++.+-.+.+|-++-.+--+++ .+++....+.|+++ |..-|+++++++.||.+|++-.
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~------~~~~~~~~~~ei~~-------lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKL------LKEENKKLSEEIEK-------LKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------hhhhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776666665443322222 33333344445544 4555788999999999999754
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.67 E-value=1.3e+02 Score=33.41 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=11.8
Q ss_pred HhhHHHHHHHHhHHHHHHHHHhh
Q 019249 251 KRDFESLKNYVSSLISVRETLLS 273 (344)
Q Consensus 251 k~dfesLksyvssli~vreTlls 273 (344)
..+......++...+.-.++.++
T Consensus 346 ~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 346 LEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.73 E-value=1.4e+02 Score=33.04 Aligned_cols=12 Identities=58% Similarity=0.681 Sum_probs=5.7
Q ss_pred ChHHHHHHHHHH
Q 019249 51 SEEDAKKELEVL 62 (344)
Q Consensus 51 Seeda~KELevL 62 (344)
++.+|++=++.|
T Consensus 550 ~~~~a~~~i~~l 561 (1163)
T COG1196 550 NEEVAKKAIEFL 561 (1163)
T ss_pred ChHHHHHHHHHH
Confidence 344555544444
No 19
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=74.39 E-value=1.7 Score=32.77 Aligned_cols=15 Identities=53% Similarity=1.035 Sum_probs=13.6
Q ss_pred cccccccccCCCCCC
Q 019249 97 QLEGVGLVDKNGTPL 111 (344)
Q Consensus 97 qlegVG~VDk~G~pl 111 (344)
+-+|+|=||+.|+|+
T Consensus 5 ~y~gigp~De~giP~ 19 (47)
T PF02208_consen 5 HYEGIGPVDESGIPL 19 (47)
T ss_pred cCCCcCccccCCCcc
Confidence 457999999999999
No 20
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=74.26 E-value=46 Score=31.25 Aligned_cols=97 Identities=22% Similarity=0.393 Sum_probs=74.5
Q ss_pred hhhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHH
Q 019249 146 GAYIGELLKSV----QMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNE 221 (344)
Q Consensus 146 ~~Yv~e~LksV----~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLne 221 (344)
.+|||.+|.+- .++.++|+..+..+.+ =|..+|.|-+.-+=|+..|+..||-|
T Consensus 38 Sa~IG~vLd~yL~yQKafnE~MekYLe~lNl-------------PSr~DiarvA~lvinlE~kvD~lee~---------- 94 (189)
T TIGR02132 38 SALMGNVLDLNLFYQKALNDTTGNYLEQVNV-------------PTKEDIANVASLVINLEEKVDLIEEF---------- 94 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 46788887776 7889999988876654 26677777777777777788877654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 019249 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE 269 (344)
Q Consensus 222 Mrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vre 269 (344)
++|+++.-.-|-+.+---+.++..+++|..+|-.-|+-+...-|
T Consensus 95 ----fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 95 ----FDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred ----HHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777767766777788999999999999999998876654
No 21
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=73.74 E-value=7 Score=33.10 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=49.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccCC
Q 019249 25 QEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPD 87 (344)
Q Consensus 25 ~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~ 87 (344)
..+..+|.+|..++..|.+.|..+.+- ++||..||.|--+-.-++.-|..=-.+-.||.
T Consensus 79 ~~i~~sq~~i~~lK~~L~~ak~~L~~~----~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~ 137 (142)
T PF04048_consen 79 SSISESQERIRELKESLQEAKSLLGCR----REELKELWQRSQEYKEMIEILDQIEELRQVPD 137 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456778888889999999999888653 46899999999999999999988888888885
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.61 E-value=95 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHhhhhhHHHHHHHHHh-----hhhhhhcChHHHHHHHHHHHHHHHhHHHHHH
Q 019249 26 EMERSQFQVDVLQEKLME-----VKTCIKDSEEDAKKELEVLWRRVKTTATLLT 74 (344)
Q Consensus 26 eme~~qSQVdvLq~rl~e-----vKa~i~gSeeda~KELevL~rRVKT~atLLt 74 (344)
-+...+..+..+.+.... +|.++.. .+|-|..++.=++-|||-+.|.+
T Consensus 83 ~I~egr~~~~~~E~~~~~~nPpLf~EY~~a-~~d~r~~m~~q~~~vK~~aRl~a 135 (325)
T PF08317_consen 83 YISEGRQIFEEIEEETYESNPPLFREYYTA-DPDMRLLMDNQFQLVKTYARLEA 135 (325)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555444432 3444444 46678899999999998876543
No 23
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.14 E-value=72 Score=28.15 Aligned_cols=89 Identities=24% Similarity=0.199 Sum_probs=65.2
Q ss_pred HHhHHHHHHHHhhHHHHHHHHhHHHH----HHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhh
Q 019249 241 AENEQELCRVKRDFESLKNYVSSLIS----VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRL 316 (344)
Q Consensus 241 aenE~elsrvk~dfesLksyvssli~----vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL 316 (344)
-.-+.+|.|++++=.||+..|-+|-. +.+.+...+++-+|--+-.+.|-+....+-.+..+=+.++.-+..|+.-|
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999988877644 44455555666666666666677777777777777778888888888888
Q ss_pred hhhcchhHHHHHH
Q 019249 317 TALLDKKEAQLLA 329 (344)
Q Consensus 317 ~allDkKEAqL~A 329 (344)
...|.++-.+...
T Consensus 86 ~k~lq~~q~kv~e 98 (140)
T PF10473_consen 86 DKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877655443
No 24
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=69.42 E-value=17 Score=34.36 Aligned_cols=50 Identities=42% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHH
Q 019249 268 RETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEA 325 (344)
Q Consensus 268 reTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEA 325 (344)
-+++.+....-.+.+.|=++| .++.|+..+++-|++||.||+.+|+-++-
T Consensus 62 ~~~~~~~~~~~~en~~Lk~~l--------~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 62 LEFLKSLKDLALENEELKKEL--------AELEQLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHHHhHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 344444444444444443333 25678889999999999999999997653
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.93 E-value=2e+02 Score=32.32 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 019249 54 DAKKELEVLWRRVKTTATLLTYLKSKARIM 83 (344)
Q Consensus 54 da~KELevL~rRVKT~atLLtYLKSKARiM 83 (344)
+++.+++.....+....++..|++.--.+.
T Consensus 643 ~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a 672 (1311)
T TIGR00606 643 RLKEEIEKSSKQRAMLAGATAVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777778888888877654443
No 26
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.64 E-value=1e+02 Score=28.43 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHH
Q 019249 244 EQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAE 305 (344)
Q Consensus 244 E~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaE 305 (344)
++++...+.++...+.++..=+.-+..++.++.++...+.-..++-+...+++.+..+.+++
T Consensus 171 ~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 171 RQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444443222233444555555555554444444444444444333333
No 27
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.57 E-value=1.7e+02 Score=34.17 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHH----------HHHHhhhhhhhccC
Q 019249 287 RLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL----------LAMNEQCKVMALNA 341 (344)
Q Consensus 287 rLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL----------~AmnEQcK~mAl~~ 341 (344)
.+-.+...++.+....+.+++.+=.+--.+...++.-++++ ....+.|-.++|+.
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~Sd 437 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTA 437 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 33334444444444555555555444444444444444443 33445565555553
No 28
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=67.39 E-value=1.2e+02 Score=29.19 Aligned_cols=137 Identities=26% Similarity=0.384 Sum_probs=98.2
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHH
Q 019249 191 IRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRET 270 (344)
Q Consensus 191 i~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreT 270 (344)
++.|..++.-...|++.....+-.-. ..+++--+-|..|+. |=....+-|.+|. .-|..|+.-+--+-+|
T Consensus 162 ~k~keLE~Ql~~AKl~q~~~~~~~e~---~k~~~~~~~~l~~~~-~~~~~~~~E~~Lr------~QL~~Y~~Kf~efq~t 231 (309)
T PF09728_consen 162 LKQKELEVQLAEAKLEQQQEEAEQEK---EKAKQEKEILLEEAA-QVQTLKETEKELR------EQLNLYSEKFEEFQDT 231 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 45667777888888888765542221 122222223444554 4444444555554 5688899999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhcchhhhhh-------hHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 271 LLSSEKQFQTIERLFERLVAKTTQLEGEKMQ-------KEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 271 llssekqfqtiE~lferLvakt~qLE~eK~q-------KEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
|-.|-.-|.|.-.=.+++.-++..||.|... --+-+-.+++|+..+..-++....|+..+.-=|+.|
T Consensus 232 L~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 232 LNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987643 234567788999888888888888888888777755
No 29
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.68 E-value=1.5e+02 Score=30.02 Aligned_cols=130 Identities=25% Similarity=0.291 Sum_probs=82.7
Q ss_pred cHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhH---
Q 019249 187 GQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS--- 263 (344)
Q Consensus 187 ~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvss--- 263 (344)
-+|||..-..||+.+...+.++|-=+.|.+-.+.+--+............ |.|+.+...+|.+++.....
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~e~~l~~~el~~~~ee~~~~~s 358 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-------EAELRLYYQELYHYREELSRQKS 358 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999888887766555444444443333222 88888888888777654432
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhh-----hcchh-------hhhhhHHHHHHHHHhhhhhhhhcchhHHHHH
Q 019249 264 LISVRETLLSSEKQFQTIERLFERLVAKT-----TQLEG-------EKMQKEAEVQKLMEENVRLTALLDKKEAQLL 328 (344)
Q Consensus 264 li~vreTllssekqfqtiE~lferLvakt-----~qLE~-------eK~qKEaEVQKlMeENvrL~allDkKEAqL~ 328 (344)
..+.|-+-. +..|.+|...|-+++ +.||+ --.||...+-.|.-|+-.|.=-|.+-+.||.
T Consensus 359 ~~~~k~~~k-----e~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 359 PLQLKLKEK-----ESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 233333333 334445555555555 12222 1245666666778888777777777777766
No 30
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.64 E-value=27 Score=28.86 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=42.7
Q ss_pred hhchhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 019249 212 ALGTNGI--LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL 271 (344)
Q Consensus 212 a~gTn~i--LneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTl 271 (344)
.+|-||+ +.+++++++++-.|-...+++-+.-..|+.+++.|- .|+... +|+-|
T Consensus 20 ~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~----dyiEe~--AR~~L 75 (105)
T PRK00888 20 WFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ----EAIEER--ARNEL 75 (105)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH----HHHHHH--HHHHc
Confidence 4688986 679999999999999999888888888888888763 577665 55543
No 31
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=66.50 E-value=52 Score=27.37 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=34.9
Q ss_pred HHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhh
Q 019249 288 LVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMA 338 (344)
Q Consensus 288 Lvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mA 338 (344)
+......|+.+=..|+.+.+.+ -.|.-..+++.+-.+......++|--||
T Consensus 67 ~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~la 116 (150)
T PF07200_consen 67 LYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELA 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777766666 6677777787777777777777776664
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.43 E-value=1.4e+02 Score=29.20 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 019249 29 RSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKA 80 (344)
Q Consensus 29 ~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKA 80 (344)
..+.+++.++..+..++......-++-+++++.|.+..+...+-+.-|+.+.
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555556777888888888888777777776654
No 33
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.05 E-value=90 Score=29.29 Aligned_cols=48 Identities=33% Similarity=0.362 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHH
Q 019249 279 QTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQ 326 (344)
Q Consensus 279 qtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAq 326 (344)
..+|.=.-.|.|...|+|.|.-.=.++++.|=+||.+|.+=.|+---+
T Consensus 77 ~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 77 KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 345555669999999999999999999999999999999877754433
No 34
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.05 E-value=2.7e+02 Score=31.70 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcc
Q 019249 216 NGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQL 295 (344)
Q Consensus 216 n~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qL 295 (344)
+.+.--.++++.+|..|-.-|+.-+.+|=.|-.+++.+.--|.-.=+-+-..+=-+-+.|+++.+-+.=|+.|-.+.++|
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l 436 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTEL 436 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778888887777777777776666677877777766665555554334556888888888888888888888
Q ss_pred hhhhh---hhHHHHHH
Q 019249 296 EGEKM---QKEAEVQK 308 (344)
Q Consensus 296 E~eK~---qKEaEVQK 308 (344)
..++. +|=++|||
T Consensus 437 ~~~h~~lL~K~~di~k 452 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQK 452 (980)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 87764 34444444
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.33 E-value=1.4e+02 Score=28.96 Aligned_cols=83 Identities=29% Similarity=0.332 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 019249 215 TNGILNEMRQRVEDLVEETSRQRQRAAENEQ----ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVA 290 (344)
Q Consensus 215 Tn~iLneMrqrvedlv~EtsrqrqraaenE~----elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLva 290 (344)
=|+++.+++.+...|..|-..-|+...+-+. ||.+.|.++..+..-+. .-+-.+-..+.|.++++.-.+...+
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~---~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM---IKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777777766443 77777755544433332 2233344445566665555555555
Q ss_pred hhhcchhhhh
Q 019249 291 KTTQLEGEKM 300 (344)
Q Consensus 291 kt~qLE~eK~ 300 (344)
+..++.++-+
T Consensus 247 ~k~e~~~~I~ 256 (312)
T smart00787 247 KKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 36
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.97 E-value=1.8e+02 Score=30.22 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred HhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhh
Q 019249 251 KRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 251 k~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK 299 (344)
++.+..+++=+..+-...-.+...+++++.-+.+|+.|..+..+..-..
T Consensus 358 ~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 358 VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666666666666777788888888889988888876654433
No 37
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.34 E-value=43 Score=26.45 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
.+++.|+++=-.+..-+...|+++..+.++..-+++.-|||
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56778888888888888999999999999999999999996
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.81 E-value=1.6e+02 Score=28.02 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 019249 216 NGILNEMRQRVEDLVE 231 (344)
Q Consensus 216 n~iLneMrqrvedlv~ 231 (344)
+||.+.|..+++.|..
T Consensus 148 ~gl~~~L~~~~~~L~~ 163 (325)
T PF08317_consen 148 EGLKEGLEENLELLQE 163 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.00 E-value=1.5e+02 Score=31.44 Aligned_cols=86 Identities=26% Similarity=0.294 Sum_probs=46.5
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHH------------HHHHhh
Q 019249 246 ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQ------------KLMEEN 313 (344)
Q Consensus 246 elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQ------------KlMeEN 313 (344)
+|.++|+-|+.+..-+++|-+---.+ |+.=+.+|+..-.+-+|...+..|++--. |+- ||=+.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~---e~~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDL---EAEKKIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence 56666666666665555543322111 12222344433334444433333332211 343 444555
Q ss_pred hhhhhhcchhHHHHHHHHhhhh
Q 019249 314 VRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 314 vrL~allDkKEAqL~AmnEQcK 335 (344)
=++.+.++-|+.++.-++||.+
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999987
No 40
>PRK09039 hypothetical protein; Validated
Probab=58.55 E-value=1.5e+02 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 019249 302 KEAEVQKLMEENVRLTALLDKKEAQLLAMNEQ 333 (344)
Q Consensus 302 KEaEVQKlMeENvrL~allDkKEAqL~AmnEQ 333 (344)
.-.+|+.|-.+=-.|.+-|..-+++|.+..++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444444444445554444433
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.88 E-value=3.8e+02 Score=31.60 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc------HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHH
Q 019249 156 VQMVTDVMEVLVKRVIMAESETAVEKEKVTLG------QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDL 229 (344)
Q Consensus 156 V~mVtdvMEsLvKRvi~AESEtaveKeKv~~~------~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedl 229 (344)
+.-+.|.++.|-++.---+.+...-+....+. +.++.....+++.+..++++.+.-.-....-+.++..+++.+
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleel 388 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777655554444333332222 456666677778888888877777666666677777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 019249 230 VEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL 271 (344)
Q Consensus 230 v~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTl 271 (344)
-.+-...+..-++-.+++.........+...+..+-++++.+
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777666666777777777777777888888887777765
No 42
>TIGR02809 phasin_3 phasin family protein. Members of this protein family are encoded in polyhydroxyalkanoic acid storage system regions in Vibrio, Photobacterium profundum SS9, Acinetobacter sp., Aeromonas hydrophila, and several species of Vibrio. Members appear distantly related to the phasin family proteins modeled by TIGR01841 and TIGR01985.
Probab=55.93 E-value=30 Score=29.89 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhh
Q 019249 252 RDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVR 315 (344)
Q Consensus 252 ~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvr 315 (344)
+|-+||.+|.+ +|-+++.+|..++..-..-|-+=-.+=-.||+||.-|||+
T Consensus 57 kD~~sl~sf~t-------------~Q~e~l~~Lsqqm~eD~~kL~~l~~~Fk~evekL~ae~vk 107 (110)
T TIGR02809 57 KDAQSLAAFNT-------------QQLETLSKLSQQMMDDSKKLNTLAQQFKDDVEALAAENIK 107 (110)
T ss_pred CCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57777777754 6778888888888887776666555666799999999997
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.68 E-value=42 Score=26.51 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 278 FQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 278 fqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
++++|.=.++|+....+|..|-.+=-+++..+..|+-.|..-.+---..+.||-.+-|-|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 577888899999999999999999999999999999998887777777788887666543
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.68 E-value=45 Score=30.64 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Q 019249 227 EDLVEETSRQRQRAAENEQELCRVKRDFESLKNY 260 (344)
Q Consensus 227 edlv~EtsrqrqraaenE~elsrvk~dfesLksy 260 (344)
.+.+..+...|.|-.+-|+|+..++.....+.+-
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4667777788888888888888888777776544
No 45
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=54.05 E-value=5.5 Score=41.17 Aligned_cols=25 Identities=36% Similarity=0.849 Sum_probs=20.8
Q ss_pred cccCCccccccc--------cccccccccccCC
Q 019249 83 MAVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 83 MAvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
-.+=+.+||||| |-..+|+|.||++
T Consensus 270 yS~~~~P~TsCGCFE~i~~~iPe~~G~~iV~R~ 302 (463)
T PRK04456 270 HSFFEYPHTSCGCFEAVAFYIPEVDGIGIVHRE 302 (463)
T ss_pred EEeccCCCcccchhhhheeeeecCceeEEEecC
Confidence 344567899999 7889999999987
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.66 E-value=4.4e+02 Score=31.07 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHH
Q 019249 149 IGELLKSVQMVTD-VMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVE 227 (344)
Q Consensus 149 v~e~LksV~mVtd-vMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrve 227 (344)
+...++....+.. -.+++.++--=-|.+.+-.+|+.--..-.|.+-..+||.-+.+..|+|..--+-+...+++.-.++
T Consensus 371 ~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~ 450 (1293)
T KOG0996|consen 371 VKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIE 450 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHH
Confidence 5565666655544 888999998889999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------------------HHHHHHHH--------------hhHHHHHHH----HhHHHHHHHHH
Q 019249 228 DLVEETSRQRQRAAEN------------------EQELCRVK--------------RDFESLKNY----VSSLISVRETL 271 (344)
Q Consensus 228 dlv~Etsrqrqraaen------------------E~elsrvk--------------~dfesLksy----vssli~vreTl 271 (344)
+|-..--+-+..+-+| |.+|.-.. -+|+.|.+- +..+..+..+|
T Consensus 451 ~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L 530 (1293)
T KOG0996|consen 451 QLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKL 530 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866544433333322 22222221 233333332 22333444455
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHh
Q 019249 272 LSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 272 lssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeE 312 (344)
+.+....+.--....++-.....+..|..+++.+++++-.+
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e 571 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKE 571 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 55544444444455566667777777888888888887654
No 47
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=52.85 E-value=70 Score=25.32 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHh
Q 019249 148 YIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEME 209 (344)
Q Consensus 148 Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemE 209 (344)
+..++...++.+.-=++-|-+=|-++|.. -.|..|++.||.+...-|..+..++..|+
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788888888877788888888888776 67889999999999999999988888875
No 48
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.91 E-value=2.7e+02 Score=28.99 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 019249 216 NGILNEMRQRVEDLVEETSRQRQR 239 (344)
Q Consensus 216 n~iLneMrqrvedlv~Etsrqrqr 239 (344)
|.++.++|++..++-.+...-+.+
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~ 310 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTT 310 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899998888876654444443
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.92 E-value=5.5e+02 Score=31.43 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-------ccHHHHHhh-hhhhhhhhhhHHHHhhhhhchhhhHH
Q 019249 149 IGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVT-------LGQEEIRKK-ANQIENMSLKLEEMERFALGTNGILN 220 (344)
Q Consensus 149 v~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~-------~~~Eei~rK-~~Qie~ms~klEemErfa~gTn~iLn 220 (344)
...+...++.=.+.+.-|.+.+.-+-++.+--+-|.- -..||++++ ...++.....++.++.-...=.-+.+
T Consensus 1331 ~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~ 1410 (1930)
T KOG0161|consen 1331 LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKN 1410 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666555555554444432 122344444 55666655555555544444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHH----HHhhhhHHHHHHHHHHHHHHhhhhcch
Q 019249 221 EMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE----TLLSSEKQFQTIERLFERLVAKTTQLE 296 (344)
Q Consensus 221 eMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vre----TllssekqfqtiE~lferLvakt~qLE 296 (344)
..+|-++|+..+..+.|+-++.-|..+.+.-.-....|.-..-+..-++ .+...+..-+.+....+-+.....+|+
T Consensus 1411 ~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~ 1490 (1930)
T KOG0161|consen 1411 RLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELR 1490 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777766666665555444444444444333333322 223333334444444555555555555
Q ss_pred hhhhhhHHHHHHHHHh
Q 019249 297 GEKMQKEAEVQKLMEE 312 (344)
Q Consensus 297 ~eK~qKEaEVQKlMeE 312 (344)
.+......++.+|..-
T Consensus 1491 renk~l~~ei~dl~~~ 1506 (1930)
T KOG0161|consen 1491 RENKNLSQEIEDLEEQ 1506 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 50
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.53 E-value=2.5e+02 Score=27.41 Aligned_cols=49 Identities=12% Similarity=0.330 Sum_probs=37.3
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q 019249 246 ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQ 294 (344)
Q Consensus 246 elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~q 294 (344)
.+..+++.++.++..+..+...--++...+++.+.-+.+|+-|+.+..+
T Consensus 332 ~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 332 RVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777778888889999999999998887654
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.10 E-value=3.5e+02 Score=28.92 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=39.5
Q ss_pred HHhhhhcchhhhhhhHHHHHHH---H-HhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 288 LVAKTTQLEGEKMQKEAEVQKL---M-EENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 288 Lvakt~qLE~eK~qKEaEVQKl---M-eENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
|-+|...||+.-...++.++.| + +++-...+.|+.|+|++.-|.+||.-+
T Consensus 308 Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 308 LRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4467778888888888888765 3 444556799999999999999999744
No 52
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=50.10 E-value=84 Score=28.21 Aligned_cols=104 Identities=20% Similarity=0.359 Sum_probs=64.6
Q ss_pred hhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHH-------H-HH
Q 019249 196 NQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL-------I-SV 267 (344)
Q Consensus 196 ~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssl-------i-~v 267 (344)
.-|+.+..|+++.|+..+|.++.-+.=...|.|...-+...=..+...=+-+.-+-...+.|-.|+++- . ++
T Consensus 5 ~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~e~~~l~~~~ 84 (174)
T PF07426_consen 5 SALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFIEEIQLPDSA 84 (174)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhhhhcccchHH
Confidence 457788899999999999976653322334444444433333344333333444555678888877742 1 33
Q ss_pred H-HHHhhhhHHHHHHHHHHHHHHhhhhcchhhh
Q 019249 268 R-ETLLSSEKQFQTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 268 r-eTllssekqfqtiE~lferLvakt~qLE~eK 299 (344)
. +-||++|..+...-++|+++=.=..=|.++.
T Consensus 85 K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~ 117 (174)
T PF07426_consen 85 KLQIILAEEDEIKSTAELLEKIKSLEPVLDSES 117 (174)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHH
Confidence 3 6688999888888887777654444444544
No 53
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=49.76 E-value=1.9e+02 Score=25.82 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=78.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHH
Q 019249 145 DGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQ 224 (344)
Q Consensus 145 d~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrq 224 (344)
-..||..+=..+..+....+.||++-- + +.-+-.++-.- +.. |-..| .|.-|..--.
T Consensus 9 ~k~~i~~Le~~Lk~l~~~~~~l~~~r~----e-------la~~~~efa~~---~~~----L~~~E-----~~~~l~~~l~ 65 (216)
T cd07627 9 KKQYLDSLESQLKQLYKSLELVSSQRK----E-------LASATEEFAET---LEA----LSSLE-----LSKSLSDLLA 65 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHH---HHH----HHHhh-----cchHhHHHHH
Confidence 356888888888888888888887642 0 11111222111 111 11222 1333444446
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhHH-HHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhh
Q 019249 225 RVEDLVEETSRQRQRAAENEQELCRVKRDFE-SLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 225 rvedlv~EtsrqrqraaenE~elsrvk~dfe-sLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK 299 (344)
.+.+..+.+++--.+.+.++. -.|+ +|+-|+..+-+||.+|-.-.+-+++.+.+..-|..+..+++.=+
T Consensus 66 ~~a~~~~~~~~~~~~~a~~e~------~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 66 ALAEVQKRIKESLERQALQDV------LTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777766666444432 2344 89999999999999998888888888888877777766665433
No 54
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.58 E-value=1.5e+02 Score=24.67 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=20.5
Q ss_pred HhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019249 208 MERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRD 253 (344)
Q Consensus 208 mErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~d 253 (344)
+..|..+-+. +.+|++.++++..+...--++--..+.+|...|..
T Consensus 19 l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~ 63 (150)
T PF07200_consen 19 LDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQ 63 (150)
T ss_dssp HHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 4555555444 55677777777665433332222224555444443
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=48.39 E-value=25 Score=25.91 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHhhh
Q 019249 303 EAEVQKLMEENVRLTALLDKKEAQLLAMNEQC 334 (344)
Q Consensus 303 EaEVQKlMeENvrL~allDkKEAqL~AmnEQc 334 (344)
|.+|+.|+.+|-.|.+-++.-+.++..+..|+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777777777777776666654
No 56
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.30 E-value=50 Score=26.74 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhh
Q 019249 300 MQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 300 ~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK 335 (344)
.+-+++||+|=...-||-.-||+.+|....+.+=|+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~ 70 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANR 70 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345677777777777888888888887777766554
No 57
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.91 E-value=2.6e+02 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=18.9
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019249 213 LGTNGILNEMRQRVEDLVEETSRQRQR 239 (344)
Q Consensus 213 ~gTn~iLneMrqrvedlv~Etsrqrqr 239 (344)
+..|..+..+++++.++-.+-...+++
T Consensus 250 ~~~~~~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 250 VIANPIIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888877766655554
No 58
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=47.42 E-value=8 Score=39.97 Aligned_cols=24 Identities=38% Similarity=0.895 Sum_probs=20.3
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 019249 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 84 AvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
.+=+.+||||| |-..+|+|.||++
T Consensus 268 s~~~~P~TsCGCfE~i~~~iPe~~G~~iv~R~ 299 (458)
T TIGR00316 268 SAFEYPHTSCGCFEAIVFYIPEVDGIGIVHRG 299 (458)
T ss_pred EeccCCCcccchHhhheeeeecCceeEEEecC
Confidence 44567899999 7889999999987
No 59
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=47.11 E-value=17 Score=29.53 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 019249 306 VQKLMEENVRLTALLDKKEAQLLAMNEQ 333 (344)
Q Consensus 306 VQKlMeENvrL~allDkKEAqL~AmnEQ 333 (344)
+..+++||.+|.--|.|-||.|+.+.-.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999987643
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.71 E-value=2.6e+02 Score=30.21 Aligned_cols=99 Identities=31% Similarity=0.462 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH-------hHHHH----H------HHHHhhhhHHHHHHHHH
Q 019249 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV-------SSLIS----V------RETLLSSEKQFQTIERL 284 (344)
Q Consensus 222 Mrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyv-------ssli~----v------reTllssekqfqtiE~l 284 (344)
.|+|..||..|-.+.|..-..-|+.+.....+...|+.|+ ..|.+ . -|+=||.|-++. -.|
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK--ldL 620 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK--LDL 620 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHH
Confidence 5778888888888888777777777777777777777773 11111 1 233455555554 257
Q ss_pred HHHHHhhhhcch---hhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 019249 285 FERLVAKTTQLE---GEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQ 333 (344)
Q Consensus 285 ferLvakt~qLE---~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQ 333 (344)
|.-|-.--.||| +.-++||.|+-.| .-|=||++|+--.
T Consensus 621 fsaLg~akrq~ei~~~~~~~~d~ei~~l-----------k~ki~~~~av~p~ 661 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQLRKKDKEIEEL-----------KAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCc
Confidence 777766555555 4455667666432 3355677766544
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.51 E-value=3.7e+02 Score=27.57 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHH
Q 019249 215 TNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL 264 (344)
Q Consensus 215 Tn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssl 264 (344)
+.....+|-.-+..+-.|+..-|..+...-.|+.++|.+.+..|.-+.+.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888888888888888888776654
No 62
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.98 E-value=2.4e+02 Score=25.24 Aligned_cols=44 Identities=30% Similarity=0.279 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhh
Q 019249 255 ESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGE 298 (344)
Q Consensus 255 esLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~e 298 (344)
++++.-+.-.|+|-|+|=|.=.+.+.-+.=.++|-+...||+.+
T Consensus 22 e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q 65 (158)
T PF09744_consen 22 EAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQ 65 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 45666677777888888776555555555555666666666543
No 63
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.57 E-value=95 Score=25.64 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=56.5
Q ss_pred HhhHHHHHHHHhHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhh
Q 019249 251 KRDFESLKNYVSSLISVRETLLSSE-----------KQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTAL 319 (344)
Q Consensus 251 k~dfesLksyvssli~vreTllsse-----------kqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~al 319 (344)
..||.+|..+++.+.-.+ +..| |=|.-..=..+-|.---..|-....+-+.+++.+-.++-+|...
T Consensus 26 ~~Di~~Lq~~i~~vtf~~---l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 26 ELDIDTLQENIENVTFCD---LENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQK 102 (118)
T ss_pred ccCHHHHHHHHHhcceec---cChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899998888765432 1111 23443333344444444556666666777888888999999999
Q ss_pred cchhHHHHHHHHhhhh
Q 019249 320 LDKKEAQLLAMNEQCK 335 (344)
Q Consensus 320 lDkKEAqL~AmnEQcK 335 (344)
+.+..+++..+.+.||
T Consensus 103 ~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 103 LKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998886
No 64
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=42.40 E-value=13 Score=31.54 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccCCccccccccccccccccccCCCC
Q 019249 34 VDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGT 109 (344)
Q Consensus 34 VdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~LAhtScGIkqlegVG~VDk~G~ 109 (344)
+++|..||..- ..-||+|--+=+||.||---.---+|+.+-.--.=|+.|...-|+|.+|.
T Consensus 39 m~~l~kRL~~~---------------~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~ 99 (123)
T cd03571 39 MSMLWKRLNDK---------------GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGK 99 (123)
T ss_pred HHHHHHHHHhc---------------cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCC
Confidence 45667777653 45699999999999999766665666666555566888888889999886
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.14 E-value=2.1e+02 Score=26.36 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhhhhhcc
Q 019249 303 EAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 303 EaEVQKlMeENvrL~allD 321 (344)
..+++++-.+|..|.+.+|
T Consensus 145 ~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 66
>PRK01156 chromosome segregation protein; Provisional
Probab=42.03 E-value=4.5e+02 Score=27.89 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHHHHHhHHHHHHHHhhHHHHHHHHhHHHH-------HHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHH
Q 019249 236 QRQRAAENEQELCRVKRDFESLKNYVSSLIS-------VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQK 308 (344)
Q Consensus 236 qrqraaenE~elsrvk~dfesLksyvssli~-------vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQK 308 (344)
.++...+|..++..+..+.+.|+.-+..+-. ..+.+-..+..+..++.-++.|-+....|+++..+.+..+.+
T Consensus 634 ~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~ 713 (895)
T PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE 713 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555555555555555554444433 444444444455555555555555555555555444443333
No 67
>KOG0798 consensus Uncharacterized conserved protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.03 E-value=11 Score=38.14 Aligned_cols=24 Identities=46% Similarity=0.823 Sum_probs=19.8
Q ss_pred cCCccccccccccccccccccCCCCC
Q 019249 85 VPDLAHTSCGIRQLEGVGLVDKNGTP 110 (344)
Q Consensus 85 vP~LAhtScGIkqlegVG~VDk~G~p 110 (344)
+|. ..+|-|++|+|+|++||.|.+
T Consensus 289 lP~--gm~~~~~~L~gl~l~~k~~~~ 312 (380)
T KOG0798|consen 289 LPY--GMPCDIKQLEGLGLLDKGPFS 312 (380)
T ss_pred CCC--CCCcChhhcccccccccCCcc
Confidence 454 346999999999999998865
No 68
>cd04494 BRCA2DBD_OB2 BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=40.82 E-value=1.2e+02 Score=29.31 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=46.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhcchh-----------------hhhhhHHHHHHHHHhhh--------------
Q 019249 266 SVRETLLSSEKQFQTIERLFERLVAKTTQLEG-----------------EKMQKEAEVQKLMEENV-------------- 314 (344)
Q Consensus 266 ~vreTllssekqfqtiE~lferLvakt~qLE~-----------------eK~qKEaEVQKlMeENv-------------- 314 (344)
--|+..+...+|+.-+|+||.++.+....=+. ..-|.=++..+.|+.=.
T Consensus 44 E~r~a~~~~~~~~~~~e~l~~~iq~e~e~~~~~~~~~~~~~~~~~~~~v~~l~dGaeLyeale~a~Dps~le~~lS~~Q~ 123 (251)
T cd04494 44 EEREARLHAQRQQKKLEALFSKIQEEFEKEEEDNNQRRPRSRTRTRQNVTDLQDGAELYEALEAAADPSFLEAELSEEQL 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccceehhccccHHHHHHHHHcCCChHHHHhhCCHHHH
Confidence 34677788888888888888877654432221 12344567777776511
Q ss_pred -----hhhhhcchhHHHHHHHHhhhhhhhc
Q 019249 315 -----RLTALLDKKEAQLLAMNEQCKVMAL 339 (344)
Q Consensus 315 -----rL~allDkKEAqL~AmnEQcK~mAl 339 (344)
--.-+.|||+++|+.-.+|..--|+
T Consensus 124 ~~L~~y~~~~~~~kq~~lQ~~~~ka~~~a~ 153 (251)
T cd04494 124 EALSNYQQLQNEKKQARLQEEFRKAVEEAL 153 (251)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1124578999999977766544443
No 69
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.34 E-value=40 Score=29.53 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhh
Q 019249 278 FQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTA 318 (344)
Q Consensus 278 fqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~a 318 (344)
|.++-.|-++|-.-.+|+++=|.+ ++.+||||..|+-
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~----l~~lvEEN~~L~l 43 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH----LGSLVEENTALRL 43 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHh
Confidence 777777777888888888888765 6789999988764
No 70
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.32 E-value=42 Score=28.58 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhhhhh
Q 019249 303 EAEVQKLMEENVRLTAL 319 (344)
Q Consensus 303 EaEVQKlMeENvrL~al 319 (344)
...|+.|||||.+|+-=
T Consensus 28 K~~~~el~EEN~~L~iE 44 (110)
T PRK13169 28 KKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45688889988887654
No 71
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.01 E-value=5.1e+02 Score=27.97 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhh---hcccccCCccccccccccccccc
Q 019249 26 EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSK---ARIMAVPDLAHTSCGIRQLEGVG 102 (344)
Q Consensus 26 eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSK---ARiMAvP~LAhtScGIkqlegVG 102 (344)
++....+.++-+...+.+.+. .-.+...+|+.+-.+.+.....+..+.++ +...+-|+=+-..|| +.+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg-~~l~~~~ 471 (908)
T COG0419 397 ELAELSAALEEIQEELEELEK----ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG-QELPEEH 471 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCcHH
Confidence 333333444444444444443 55677788888888888888888887775 222222333344577 6555433
No 72
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=39.40 E-value=8e+02 Score=30.06 Aligned_cols=107 Identities=29% Similarity=0.398 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHH----hhhhcch
Q 019249 222 MRQRVEDLVEETSRQRQRAAENEQELCRV-KRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLV----AKTTQLE 296 (344)
Q Consensus 222 Mrqrvedlv~EtsrqrqraaenE~elsrv-k~dfesLksyvssli~vreTllssekqfqtiE~lferLv----akt~qLE 296 (344)
.-.-+.-|-+|+.|-++|...-.+-..++ +.||+.|++-++.| .+-|-+-++..+.+...|.++- -+..-|.
T Consensus 1276 ~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L---k~el~~ke~~~~el~~~~~~~q~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1276 KVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL---KEELEEKENLIAELKKELNRLQEKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788888876665554443 67888888866655 3445577899999999999988 6667788
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Q 019249 297 GEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMN 331 (344)
Q Consensus 297 ~eK~qKEaEVQKlMeENvrL~allDkKEAqL~Amn 331 (344)
-+++++.-+++.||.-|-||-+.+-.+-||.+-++
T Consensus 1353 ~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~ 1387 (1822)
T KOG4674|consen 1353 NEKANLTKELEQLEDLKTRLAAALSEKNAQELELS 1387 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999888877777744443
No 73
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=39.39 E-value=12 Score=38.36 Aligned_cols=24 Identities=33% Similarity=0.807 Sum_probs=15.0
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 019249 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 84 AvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
.+=..+||||| |-..+|||.||++
T Consensus 269 Sime~P~TsCGCfE~I~~~~Pe~nG~~iv~R~ 300 (411)
T PF03598_consen 269 SIMEDPMTSCGCFEAIAFYIPEVNGIGIVNRE 300 (411)
T ss_dssp -SSSS-----S--SEEEEEECCCTEEEEEETT
T ss_pred EeccCCCccchhHhhhhhhcccCceEEEEecC
Confidence 34456799999 6789999999997
No 74
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.37 E-value=7.2e+02 Score=29.45 Aligned_cols=176 Identities=26% Similarity=0.327 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhh-----ccHHHHHhhhhhh-----hhhhhhHHHHhhhhhchhh
Q 019249 149 IGELLKSVQMVTDVMEVLVKRVIMAESETA-VEKEKVT-----LGQEEIRKKANQI-----ENMSLKLEEMERFALGTNG 217 (344)
Q Consensus 149 v~e~LksV~mVtdvMEsLvKRvi~AESEta-veKeKv~-----~~~Eei~rK~~Qi-----e~ms~klEemErfa~gTn~ 217 (344)
|.++-.-|...++.-..-.-||=++|.|-. .|+.|.. .-+-|+.++-.++ ..--.|+.++..--.+++.
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e 348 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEE 348 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445666667777777777777777643 3333321 1122222221111 1112333333333333333
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH----hHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 019249 218 ILNEMRQRVE----DLVEETSRQRQRAAENEQELCRVKRDFESLKNYV----SSLISVRETLLSSEKQFQTIERLFERLV 289 (344)
Q Consensus 218 iLneMrqrve----dlv~EtsrqrqraaenE~elsrvk~dfesLksyv----ssli~vreTllssekqfqtiE~lferLv 289 (344)
=|.+...... +.++.-..++++..+-..++ +..|.+++.-. ..-+..+|+|-+.-.+..-.++=.+...
T Consensus 349 ~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~---kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 349 GLKDENEKFDIESNEEVEKNEAVKKEIKERAKEL---KNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 55566666666666555554 44555555433 3446778888777777777777666666
Q ss_pred hhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHH
Q 019249 290 AKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL 327 (344)
Q Consensus 290 akt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL 327 (344)
-+...+|..-..-.-+.|+++.|+-.|.-++.+-+-.|
T Consensus 426 ~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 426 RKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred hhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666666666788899998888877765544433
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.83 E-value=1.6e+02 Score=26.80 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=38.2
Q ss_pred HHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhh
Q 019249 284 LFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 284 lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK 335 (344)
--+.+-..+..|..+..+-++|+.-|=..|-+|...++..+.++..+++|-.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666777777777777777777777788888888888888887777653
No 76
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=38.70 E-value=3e+02 Score=24.83 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=30.7
Q ss_pred hhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019249 196 NQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240 (344)
Q Consensus 196 ~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~Etsrqrqra 240 (344)
..++.+...+.++...+--...+|++.++.+.+--.|-..-|.+-
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~ 66 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY 66 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666666667766666677778888888877666666666553
No 77
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.93 E-value=2.3e+02 Score=23.30 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHhhh----hHHHHHHHHHHHHHHhhhhcchhhhhhh--HHHHHHHHHhhhhhhhhcchh
Q 019249 250 VKRDFESLKNYVSSLISVRETLLSS----EKQFQTIERLFERLVAKTTQLEGEKMQK--EAEVQKLMEENVRLTALLDKK 323 (344)
Q Consensus 250 vk~dfesLksyvssli~vreTllss----ekqfqtiE~lferLvakt~qLE~eK~qK--EaEVQKlMeENvrL~allDkK 323 (344)
++.+|..+-+.++..+.+-=.++++ -..|..++.-+.+.-.+.+++|++-..= ..+|++|--+=-+++.-++.-
T Consensus 5 ~~~~w~ii~a~~~~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 5 IKKNWGIIWAVFGIAGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4667777666666666655444444 2334444444555567777888776554 667777766666777788888
Q ss_pred HHHHHHHHhhhhhh
Q 019249 324 EAQLLAMNEQCKVM 337 (344)
Q Consensus 324 EAqL~AmnEQcK~m 337 (344)
+|++.+++.|...+
T Consensus 85 ~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 85 SARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999988887654
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.38 E-value=1.3e+02 Score=31.73 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=11.9
Q ss_pred HHhhhhcccccCCccccc
Q 019249 75 YLKSKARIMAVPDLAHTS 92 (344)
Q Consensus 75 YLKSKARiMAvP~LAhtS 92 (344)
.|++.-.+..||++.+.+
T Consensus 138 ~i~~~l~~pwvP~~cr~~ 155 (594)
T PF05667_consen 138 AIREQLKAPWVPPFCRPT 155 (594)
T ss_pred HHHhhccCCCCChhhccc
Confidence 556666677888877633
No 79
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.17 E-value=3.2e+02 Score=24.78 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHH-------
Q 019249 220 NEMRQRVEDLVEETS---RQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLV------- 289 (344)
Q Consensus 220 neMrqrvedlv~Ets---rqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLv------- 289 (344)
.+++..+.+....-. .-+.|....+++|..++.+.+.|.--+..+..-|+.|..- --.+|..++.+.-
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k--f~~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK--FESAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 445555544333222 3355666677888888888888887777777777777542 1122333332222
Q ss_pred hhhhcchhhhhhhHHHHHHHHHh
Q 019249 290 AKTTQLEGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 290 akt~qLE~eK~qKEaEVQKlMeE 312 (344)
-|..-|...-.+++|+++.++.-
T Consensus 150 kKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333444677777766653
No 80
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.76 E-value=59 Score=27.28 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhh
Q 019249 279 QTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLT 317 (344)
Q Consensus 279 qtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~ 317 (344)
..|=..|..|-..+.+|=.+-.+=...|+.|+|||.+|+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.59 E-value=2.2e+02 Score=26.63 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=48.9
Q ss_pred hhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhH
Q 019249 202 SLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS 263 (344)
Q Consensus 202 s~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvss 263 (344)
..++...||..-+-|..+-+|.+++++|=.|..+-|=.-.++--+|..+++.-..|--=++.
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888899999999999999999999988888888888877654444333333
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=36.27 E-value=4.6e+02 Score=26.29 Aligned_cols=143 Identities=29% Similarity=0.338 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHH
Q 019249 160 TDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQR 239 (344)
Q Consensus 160 tdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~Etsrqrqr 239 (344)
++-+++|-..--+-..|.+.+|.++.-=+++|+.--..--+|..+.|.-|-|- ||..|.-+.+ +--|
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i--sN~LlKkl~~----l~ke------- 92 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI--SNTLLKKLQQ----LKKE------- 92 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH----HHHH-------
Confidence 34444444433333446777888888889999988888888999999999987 5666654332 2111
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHh-HHHHHHHHHhhhhHHHHH-HHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhh
Q 019249 240 AAENEQELCRVKRDFESLKNYVS-SLISVRETLLSSEKQFQT-IERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLT 317 (344)
Q Consensus 240 aaenE~elsrvk~dfesLksyvs-sli~vreTllssekqfqt-iE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~ 317 (344)
.|-=.-.+-++=|+|-+-++ -|-.+|.-....|.+... =|.++.+|-.+...|+.++-.+..++-+|..|-|.|-
T Consensus 93 ---Ke~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 93 ---KETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 11111233344444443333 233444444455554443 4567778888888888888888888877777666554
Q ss_pred h
Q 019249 318 A 318 (344)
Q Consensus 318 a 318 (344)
-
T Consensus 170 n 170 (310)
T PF09755_consen 170 N 170 (310)
T ss_pred H
Confidence 3
No 83
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=35.39 E-value=20 Score=27.51 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.5
Q ss_pred cccccccccCCCCCCC
Q 019249 97 QLEGVGLVDKNGTPLS 112 (344)
Q Consensus 97 qlegVG~VDk~G~pls 112 (344)
+-+|||=||..|+|++
T Consensus 5 ~~~gigpv~~~giPi~ 20 (50)
T smart00459 5 DYPGIVPVDESGIPQA 20 (50)
T ss_pred ccCccccccCCCCccc
Confidence 4589999999999998
No 84
>PRK09039 hypothetical protein; Validated
Probab=35.38 E-value=4.3e+02 Score=25.75 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhH
Q 019249 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS 263 (344)
Q Consensus 188 ~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvss 263 (344)
+++|..-..|++.....-++.|..--|..+-..++..|+..+-.+-..++....+.--.+.+++++.+.||.-+.+
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444555433344455567777777777777777777788878888888888888876443
No 85
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=35.08 E-value=2.1e+02 Score=26.17 Aligned_cols=34 Identities=38% Similarity=0.543 Sum_probs=21.6
Q ss_pred hhhcchhhhhhhHHHHH---HHHHhhhhhhhhcchhH
Q 019249 291 KTTQLEGEKMQKEAEVQ---KLMEENVRLTALLDKKE 324 (344)
Q Consensus 291 kt~qLE~eK~qKEaEVQ---KlMeENvrL~allDkKE 324 (344)
.-.+|+.|-++-+++.+ .+.+||-+|+.+|+-+.
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33444444444444444 77899999999988553
No 86
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.41 E-value=3.9e+02 Score=24.93 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHhhhh
Q 019249 308 KLMEENVRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 308 KlMeENvrL~allDkKEAqL~AmnEQcK 335 (344)
+.=.|...|+|.|.|-+-++..+.+++.
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888777653
No 87
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.15 E-value=1.7e+02 Score=28.82 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=39.1
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcch
Q 019249 246 ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDK 322 (344)
Q Consensus 246 elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDk 322 (344)
+++-.|+|++-+|.-+.-++.-.|-|+. .....|.=++-+-.+...||+|+.|-|....||--+--+|...+|.
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~---eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLK---ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3455566666666666666665555553 2223333333344444556666666666665555555555544443
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.99 E-value=3.3e+02 Score=24.00 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred hhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhh
Q 019249 196 NQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSE 275 (344)
Q Consensus 196 ~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllsse 275 (344)
.||-.++.++++.+.- +.+-..++.++-.+...-+.+-..-+.+|.--....+.|+.=+.+ ..=++-..|
T Consensus 95 ~~L~~~~~~l~~l~~~-------~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~---L~l~~~~~e 164 (194)
T PF08614_consen 95 QQLVELNDELQELEKE-------LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA---LQLQLNMLE 164 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred ccccccccccchhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3555566666666543 344555666666666666666666666666666666666543333 333444445
Q ss_pred HHHHHHH
Q 019249 276 KQFQTIE 282 (344)
Q Consensus 276 kqfqtiE 282 (344)
.++..++
T Consensus 165 ~k~~~l~ 171 (194)
T PF08614_consen 165 EKLRKLE 171 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 89
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.98 E-value=6.8e+02 Score=29.27 Aligned_cols=106 Identities=27% Similarity=0.359 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHH----hhhhHHHHHHHHHHHHHHhhhhcchhhh
Q 019249 224 QRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL----LSSEKQFQTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 224 qrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTl----lssekqfqtiE~lferLvakt~qLE~eK 299 (344)
.|+.|+.-|-..-.+|+.++.-++.+-.++|+-|.--+.-+-.-+.+. -+.+++..+++.=..-|-|+....|++-
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 467888888888888999999999888899988876665554433321 2235555555555556666666655554
Q ss_pred hhhHHHH--H--HHHHhhhhhhhhcchhHHHHHH
Q 019249 300 MQKEAEV--Q--KLMEENVRLTALLDKKEAQLLA 329 (344)
Q Consensus 300 ~qKEaEV--Q--KlMeENvrL~allDkKEAqL~A 329 (344)
....+++ | |++.-|-.+.-++-+.++=+.+
T Consensus 867 ~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 867 KKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 4333333 2 3556666666666555554443
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=33.98 E-value=3.7e+02 Score=24.56 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhccHHHHHhhhhhhhhhhhh-HHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Q 019249 182 EKVTLGQEEIRKKANQIENMSLK-LEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNY 260 (344)
Q Consensus 182 eKv~~~~Eei~rK~~Qie~ms~k-lEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksy 260 (344)
+||+.=+.+-.+-..+|.....+ -.++.+..-....=|.++|+.|.++..|.++--..-.--..++..+++-++..
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e--- 94 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE--- 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHH
Q 019249 261 VSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKL 309 (344)
Q Consensus 261 vssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKl 309 (344)
....-+.+.+|..+-+-.+.....-..||+.-..-..|+.-+
T Consensus 95 -------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 95 -------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
No 91
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=33.45 E-value=2.5e+02 Score=22.39 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 303 EAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 303 EaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
-..+++++.+.-.+..-+......+..+++.|.-+
T Consensus 138 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (213)
T cd00176 138 LESVEELLKKHKELEEELEAHEPRLKSLNELAEEL 172 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 34555556555555555555566666665555443
No 92
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.43 E-value=6e+02 Score=26.85 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhh
Q 019249 248 CRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGE 298 (344)
Q Consensus 248 srvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~e 298 (344)
..+++....++.-+..+-..--.+...+|++++-+.+|+.|+.|..|++-.
T Consensus 349 ~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 349 QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777788899999999999999999887765443
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.40 E-value=4.9e+02 Score=27.53 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=50.3
Q ss_pred hHHHHHHHHhH-HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHH-----HHHHHHhhhhhhhhcchhHHH
Q 019249 253 DFESLKNYVSS-LISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAE-----VQKLMEENVRLTALLDKKEAQ 326 (344)
Q Consensus 253 dfesLksyvss-li~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaE-----VQKlMeENvrL~allDkKEAq 326 (344)
||++=-|-+++ ++-.|-+-.++-+..+.-|-...||-...+||-.+-.+-+++ ++++-+||.|.+-+..-+|++
T Consensus 24 q~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 24 QCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333332 344455555566667777777777777777777777776665 567788888888887777766
Q ss_pred HHH
Q 019249 327 LLA 329 (344)
Q Consensus 327 L~A 329 (344)
-+-
T Consensus 104 ~q~ 106 (459)
T KOG0288|consen 104 EQK 106 (459)
T ss_pred Hhh
Confidence 543
No 94
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=33.23 E-value=1e+03 Score=29.37 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=69.9
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHH
Q 019249 191 IRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRET 270 (344)
Q Consensus 191 i~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreT 270 (344)
..+....+.+.+..+||.|.-+-+-+-....|...++++=.+-..--.+....+..+.++.+|+..|+.-+..=...+.-
T Consensus 1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~ 1347 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNE 1347 (1930)
T ss_pred HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888999999887877788888888887743333333333445567888999999999888877777763
Q ss_pred ----HhhhhHHHHHHHHHHHHHHhh-hhcchhhhh
Q 019249 271 ----LLSSEKQFQTIERLFERLVAK-TTQLEGEKM 300 (344)
Q Consensus 271 ----llssekqfqtiE~lferLvak-t~qLE~eK~ 300 (344)
+...-.+-+.--+-|+-++.. +..+|.+|.
T Consensus 1348 l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk 1382 (1930)
T KOG0161|consen 1348 LERKLSKANAELAQWKKKFEEEVLQRLEELEELKK 1382 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444443 444544443
No 95
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.82 E-value=3.1e+02 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHhhhhcch
Q 019249 275 EKQFQTIERLFERLVAKTTQLE 296 (344)
Q Consensus 275 ekqfqtiE~lferLvakt~qLE 296 (344)
+..++..+.-|..+......|.
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=32.29 E-value=6.4e+02 Score=26.80 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=11.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhcchh
Q 019249 271 LLSSEKQFQTIERLFERLVAKTTQLEG 297 (344)
Q Consensus 271 llssekqfqtiE~lferLvakt~qLE~ 297 (344)
+-..+.++..+..-.++|-++..+++.
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~ 709 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRT 709 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444443
No 97
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.26 E-value=2.5e+02 Score=26.73 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 019249 259 NYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQ 333 (344)
Q Consensus 259 syvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQ 333 (344)
+|+..+++.|.+ ++++..-..+...+++.+.||.|..-..++..||=+|==+...=|++-+.+-.||--|
T Consensus 118 ~ll~~l~~l~~~-----~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 118 TLLRELATLRAN-----EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHHHHHHHHHhh-----HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444 4444444444555555555666666555555555555444444444444444444444
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.15 E-value=1.8e+02 Score=31.43 Aligned_cols=95 Identities=26% Similarity=0.415 Sum_probs=60.0
Q ss_pred hhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 019249 201 MSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQT 280 (344)
Q Consensus 201 ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqt 280 (344)
..-+++.|+. ||+=|+||=+-++. --.|-+--++.-.++++|-.-+++||+.+-+... .
T Consensus 233 i~~~ie~l~~----~n~~l~e~i~e~ek-------~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~----------~ 291 (581)
T KOG0995|consen 233 IANEIEDLKK----TNRELEEMINEREK-------DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ----------H 291 (581)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhc-------CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH----------H
Confidence 5555555553 56666666652211 1112222334455678888889999988776543 2
Q ss_pred HHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchh
Q 019249 281 IERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKK 323 (344)
Q Consensus 281 iE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkK 323 (344)
++ .+..+|-.|-..||-|.++|=.+|..|.+-++++
T Consensus 292 ~~-------~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ME-------KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 3444556677788889999999999998888775
No 99
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.83 E-value=4.7e+02 Score=25.06 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHhhHHHHHHHHh
Q 019249 191 IRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAE--------NEQELCRVKRDFESLKNYVS 262 (344)
Q Consensus 191 i~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~Etsrqrqraae--------nE~elsrvk~dfesLksyvs 262 (344)
|..-..|+.....++.++-..--.-+-.+..++.+++.+-.....+-.+... ....+...+..++.++.-+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555553332233444555555555544433222111110 11112223334444444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcch
Q 019249 263 SLISVRETLLSSEKQFQTIERLFERLVAKTTQLE 296 (344)
Q Consensus 263 sli~vreTllssekqfqtiE~lferLvakt~qLE 296 (344)
.+....-.+...++++++-+.+|+.|+.|..+.+
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455566778899999999999999886554
No 100
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.71 E-value=6.8e+02 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=12.7
Q ss_pred HHHHHHhh-hhcccccCCc
Q 019249 71 TLLTYLKS-KARIMAVPDL 88 (344)
Q Consensus 71 tLLtYLKS-KARiMAvP~L 88 (344)
.+|.||+. .+.++++-|+
T Consensus 426 aiLe~l~~~g~~viitTH~ 444 (771)
T TIGR01069 426 SILEYLLKQNAQVLITTHY 444 (771)
T ss_pred HHHHHHHhcCCEEEEECCh
Confidence 46778765 5678888775
No 101
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.61 E-value=2e+02 Score=22.75 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhhhhhhh------cChHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 019249 32 FQVDVLQEKLMEVKTCIK------DSEEDAKKELEVLWRRVKTTATLLTYLKSKA 80 (344)
Q Consensus 32 SQVdvLq~rl~evKa~i~------gSeeda~KELevL~rRVKT~atLLtYLKSKA 80 (344)
..++.|+-||..+|+.+. .|-++=..+|+-|=.|+.+-..+|.-+|+++
T Consensus 28 ~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 28 TATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888765 4788889999999999999999999888763
No 102
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.30 E-value=5e+02 Score=25.25 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=20.5
Q ss_pred cHHHHHhhhhhhhh-hhhhHHHHhhhhhc
Q 019249 187 GQEEIRKKANQIEN-MSLKLEEMERFALG 214 (344)
Q Consensus 187 ~~Eei~rK~~Qie~-ms~klEemErfa~g 214 (344)
+-|.+++|+.+||| |-.||--.=+|+-+
T Consensus 6 ~we~LRkqArslE~~ld~kL~syskl~as 34 (231)
T KOG3208|consen 6 SWEALRKQARSLENQLDSKLVSYSKLGAS 34 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34788999999987 66666666666665
No 103
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.27 E-value=2.1e+02 Score=28.04 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 019249 21 EIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSK 79 (344)
Q Consensus 21 ~~Wk~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSK 79 (344)
..|+.||+..+.-++..+.++-+++..| .+.+.-|..|-..-..+..-+.|++||
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i----~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERI----TEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.11 E-value=2.2e+02 Score=28.31 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=52.3
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhcc
Q 019249 261 VSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALN 340 (344)
Q Consensus 261 vssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~ 340 (344)
|+.++..-+.......+++.+.+-...+-....++ +.+++.+.++|.++--.|..-+...|+++.++.++-.-.++.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~---~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA---KGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555444444333333321 122222277888887888888999999999999999888988
Q ss_pred CCCC
Q 019249 341 ASNI 344 (344)
Q Consensus 341 ~sn~ 344 (344)
-||+
T Consensus 106 lPN~ 109 (418)
T TIGR00414 106 IPNI 109 (418)
T ss_pred CCCC
Confidence 8885
No 105
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=30.89 E-value=1.4e+02 Score=26.26 Aligned_cols=36 Identities=36% Similarity=0.604 Sum_probs=28.2
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019249 250 VKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERL 288 (344)
Q Consensus 250 vk~dfesLksyvssli~vreTllssekqfqtiE~lferL 288 (344)
.|.|.+.-...|.+ --|-+.-+||.|+|+|+-||-|
T Consensus 83 mkkdleaankrve~---q~ekiflmekkfe~lekkyesl 118 (122)
T PF05325_consen 83 MKKDLEAANKRVES---QAEKIFLMEKKFETLEKKYESL 118 (122)
T ss_pred HHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHHHHH
Confidence 46777766666654 3478889999999999999876
No 106
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.79 E-value=1.1e+02 Score=30.81 Aligned_cols=51 Identities=35% Similarity=0.512 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019249 24 KQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKS 78 (344)
Q Consensus 24 k~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKS 78 (344)
|-|+||.|-....||- |.-|.-.--|+..+||..|+.|-=---.-|+|||+
T Consensus 146 k~ElEr~rkRle~Lqs----iRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~ 196 (338)
T KOG3647|consen 146 KAELERTRKRLEALQS----IRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKS 196 (338)
T ss_pred HHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 107
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=30.50 E-value=3.2e+02 Score=23.89 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHH
Q 019249 275 EKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLL 328 (344)
Q Consensus 275 ekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~ 328 (344)
..++.++..-|.-...+|+.|- ..-..||.|.-+|..+.+.-.+-|.
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~-------~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLH-------EACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444455555555666553 2345688888888877776666554
No 108
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.39 E-value=76 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 019249 214 GTNGILNEMRQRVEDLVEETSRQRQ 238 (344)
Q Consensus 214 gTn~iLneMrqrvedlv~Etsrqrq 238 (344)
-+|.+|.|||+-+.+-+.||+--|.
T Consensus 12 ~l~~~l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 12 ELNQMLQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999986654
No 109
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=30.15 E-value=54 Score=31.34 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccCCcc---cccccccc
Q 019249 21 EIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLA---HTSCGIRQ 97 (344)
Q Consensus 21 ~~Wk~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~LA---htScGIkq 97 (344)
..|..-|-.-.+.++.+..+|-.+..-.+.-.+-+ =+++.-+|||+.++|+.=|+-|--=...+++. |-.+|||=
T Consensus 16 ~~~~~~~~~Y~~al~e~~~k~~~~~~~~~~~~~~~--pie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI 93 (231)
T COG2357 16 LDWSEFLVPYEQALEELKTKLKILRDEYEKLHDYN--PIEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRI 93 (231)
T ss_pred cchHhHhHHHHHHHHHHHHHHHHHHHHHHhhcCCC--chHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeE
Confidence 46888888889999999999999988877655553 57899999999999999988886433333433 44567664
Q ss_pred c
Q 019249 98 L 98 (344)
Q Consensus 98 l 98 (344)
.
T Consensus 94 ~ 94 (231)
T COG2357 94 I 94 (231)
T ss_pred e
Confidence 3
No 110
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=29.31 E-value=3.3e+02 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHhhhhhchhhhHHHHHHHHHHHHHHH
Q 019249 206 EEMERFALGTNGILNEMRQRVEDLVEET 233 (344)
Q Consensus 206 EemErfa~gTn~iLneMrqrvedlv~Et 233 (344)
+|+-+.|--|+...+++.+.+.++...+
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~~ 109 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQI 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhhh
Confidence 5666666667776777776666665553
No 111
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.03 E-value=9.7e+02 Score=27.90 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH----hHHHHHHHHHhhhhHHHHHHHHHH-HHHHhhh
Q 019249 218 ILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV----SSLISVRETLLSSEKQFQTIERLF-ERLVAKT 292 (344)
Q Consensus 218 iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyv----ssli~vreTllssekqfqtiE~lf-erLvakt 292 (344)
=|++....+..+..|+..|-.+-.+-=+-+--++|.|.-++.-. ++.-..+.-.--.+||+.++++=+ ..+-...
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~ 396 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL 396 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34556666777777777776655555555555555554444321 222223333444567777777666 5555666
Q ss_pred hcchhhhhhhHHHHHHHHHhhhhhhh
Q 019249 293 TQLEGEKMQKEAEVQKLMEENVRLTA 318 (344)
Q Consensus 293 ~qLE~eK~qKEaEVQKlMeENvrL~a 318 (344)
.+.|.+-.+=+.||-|+=+.+.+|..
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777777666665544
No 112
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=28.44 E-value=2.1e+02 Score=29.26 Aligned_cols=67 Identities=28% Similarity=0.483 Sum_probs=34.2
Q ss_pred chhhhHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 019249 214 GTNGILNEMRQ------RVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFER 287 (344)
Q Consensus 214 gTn~iLneMrq------rvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lfer 287 (344)
|..|.|+||.+ ++.+++... +...+ +++...|+...+-|+.+...| ++-|--.||| |-.+|.|
T Consensus 309 gs~gLLkEl~~ve~~vr~L~el~d~~----~~p~~-~e~~~ev~~~V~EL~~~~~~L---~~GLdpLerq---Vre~Fh~ 377 (389)
T PF05633_consen 309 GSCGLLKELQQVEASVRELHELIDSF----QFPLE-EEKEEEVREAVEELARVCEAL---SQGLDPLERQ---VREVFHR 377 (389)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhc----cCCcc-hhHHHHHHHHHHHHHHHHHHH---HcccHHHHHH---HHHHHHH
Confidence 66788888876 444444432 22222 222233444444444444433 3333444665 5568888
Q ss_pred HHhh
Q 019249 288 LVAK 291 (344)
Q Consensus 288 Lvak 291 (344)
+|.-
T Consensus 378 IV~s 381 (389)
T PF05633_consen 378 IVRS 381 (389)
T ss_pred HHHh
Confidence 8853
No 113
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=28.29 E-value=4e+02 Score=23.12 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHh----------hhhHHHHHHHHHHH
Q 019249 217 GILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLL----------SSEKQFQTIERLFE 286 (344)
Q Consensus 217 ~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTll----------ssekqfqtiE~lfe 286 (344)
.+-++++..|++|+.+.- .+.....+...|..|++.+..+....+... ....+|.+++..|.
T Consensus 41 ~~~~~~~~~ve~lI~~~I--------~~~~~~~~~~~l~gl~~~~~~y~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~f~ 112 (226)
T PF03945_consen 41 DIWEEIIKQVENLIDQKI--------TEYDINILNAELNGLQNLLQDYNDALENWKNNPNNPNLKEEVRTQFNNLESKFR 112 (226)
T ss_dssp HHHHHHHHHHHHHHTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 378889999999988643 344556677888888888877777666533 23456777777666
Q ss_pred HHHhh
Q 019249 287 RLVAK 291 (344)
Q Consensus 287 rLvak 291 (344)
.-...
T Consensus 113 ~~l~~ 117 (226)
T PF03945_consen 113 NALPQ 117 (226)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 55443
No 114
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.07 E-value=2.3e+02 Score=28.25 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhc
Q 019249 260 YVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMAL 339 (344)
Q Consensus 260 yvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl 339 (344)
.|+.++...+...+...+.+.+.+-...+-.+..++ .++..+.++|+++--.|..-+...|+++..+.++-.-.++
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERNALSKEIGQA----KRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666665555555555544444333333333221 1111246778888888888999999999999999999999
Q ss_pred cCCCC
Q 019249 340 NASNI 344 (344)
Q Consensus 340 ~~sn~ 344 (344)
+-||+
T Consensus 102 ~iPN~ 106 (425)
T PRK05431 102 RIPNL 106 (425)
T ss_pred hCCCC
Confidence 99886
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.97 E-value=4.6e+02 Score=23.82 Aligned_cols=189 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHH---
Q 019249 149 IGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQR--- 225 (344)
Q Consensus 149 v~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqr--- 225 (344)
+.+.-.-+.....-++...+|.--||+|.+.=.-|+.+-++++.+-...+.....||+++++-+=..--.++-+-+|
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH------------------hHHHHHHHHHhhhhHHHHHHHH
Q 019249 226 ----VEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV------------------SSLISVRETLLSSEKQFQTIER 283 (344)
Q Consensus 226 ----vedlv~EtsrqrqraaenE~elsrvk~dfesLksyv------------------ssli~vreTllssekqfqtiE~ 283 (344)
+++|-.....-+.++.+.+.-+.-+-|-+..+-.-+ ..|-.|...|-|.|-.+.....
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~ 169 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE 169 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q ss_pred HHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 284 LFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 284 lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
-.+.+=.+...|+..-..-|.-....=-...+|..-+|.-+..|....+.++-+
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=27.94 E-value=24 Score=38.40 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=19.9
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 019249 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 84 AvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
.+=..+||||| |-..+|+|.||++
T Consensus 569 s~~~~P~TsCGCfE~i~~~~Pe~nG~~iv~R~ 600 (711)
T PRK09529 569 SIMEDPMTSCGCFEAIAAILPECNGFMVVNRE 600 (711)
T ss_pred EeccCCCcccchHHhHhhhcccCceEEEEecC
Confidence 34456799999 7789999999997
No 117
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.37 E-value=1.4e+02 Score=26.55 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhh
Q 019249 276 KQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENV 314 (344)
Q Consensus 276 kqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENv 314 (344)
.|-+.+++|++...++|.+|-.....|.+|.+.||--|.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~ 85 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANP 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 355788899999999999999999999999888886654
No 118
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.80 E-value=3.1e+02 Score=21.44 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=48.9
Q ss_pred HHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019249 190 EIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRD 253 (344)
Q Consensus 190 ei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~d 253 (344)
-|.-|-.||..+-..-|-+.+=-+--|.++.-+|+.+.++-......+.+.++-+.++...+.-
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765555555555567788999999999999999888888888888888776654
No 119
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=26.04 E-value=49 Score=24.74 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.4
Q ss_pred ccCCCCCCCCCCcC
Q 019249 104 VDKNGTPLSGWSRN 117 (344)
Q Consensus 104 VDk~G~pls~Wsk~ 117 (344)
||++|.|+++..+.
T Consensus 49 Vd~~G~~i~gt~~~ 62 (68)
T PF00086_consen 49 VDPEGKEIPGTRTR 62 (68)
T ss_dssp BSTTS-B-TS-TCB
T ss_pred ECCCCCCcCCCccC
Confidence 99999999998654
No 120
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=26.04 E-value=3.8e+02 Score=22.22 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=4.4
Q ss_pred HHHHhHHHHHHH
Q 019249 64 RRVKTTATLLTY 75 (344)
Q Consensus 64 rRVKT~atLLtY 75 (344)
..++.+..++..
T Consensus 37 ~~~~~i~~~~~~ 48 (213)
T PF00015_consen 37 ESSEDISEILSL 48 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.98 E-value=6e+02 Score=24.42 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=146.0
Q ss_pred HHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhh----cccccCCcccccccccc-cccc
Q 019249 27 MERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKA----RIMAVPDLAHTSCGIRQ-LEGV 101 (344)
Q Consensus 27 me~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKA----RiMAvP~LAhtScGIkq-legV 101 (344)
.++.+..++..+.++...+.-+..-.+++.++|..----+..+..-|.-|+.+. |-|.-|+- ||+. +++|
T Consensus 52 a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~-----~V~~V~~aV 126 (344)
T PF12777_consen 52 AEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPE-----AVKLVMEAV 126 (344)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--H-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcH-----HHHHHHHHH
Confidence 445556677777777777777777788888888776666655555555554321 33444442 2211 2222
Q ss_pred cc-ccCCCCCCCCCCcCCCCCCCCCCCcchhhhhhhccCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 019249 102 GL-VDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180 (344)
Q Consensus 102 G~-VDk~G~pls~Wsk~~d~ss~~~~d~~~~~~~~~~~g~~~~~d~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtave 180 (344)
-+ .+.+|. .|.+.+|......-++ ...|+..+..- -..++-+..++++ ..-+.
T Consensus 127 ~iLl~~~~~---------------~~k~~~W~~ak~~l~~----~~~Fl~~L~~f--d~~~i~~~~~~~l-----~~~~~ 180 (344)
T PF12777_consen 127 CILLGPKGK---------------LPKDTSWESAKKLLSD----SDNFLQRLKNF--DKDNIPEATIKKL-----KKYLK 180 (344)
T ss_dssp HHHTT-S-S---------------EE---HHHHHHCHHCS----STTHHHHHHHS---GGG--HHHHHHH-----HCTTT
T ss_pred hhHHhcccc---------------ccccccHHHHHHHHHh----HHHHHHHHHhh--ccccccHHHHHHH-----HHHhc
Confidence 21 122221 1234567655443221 12355554331 1123333333332 11111
Q ss_pred hhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Q 019249 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNY 260 (344)
Q Consensus 181 KeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksy 260 (344)
--.|..+.|.+.+.=...|-.=+--|-+|. -.+-.+.=+|++++.+-.+....+.+-++.+.+|..+......|+..
T Consensus 181 --~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~-~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 181 --NPDFNPEKVRKASKAAGSLCKWVRAMVKYY-EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp --STTSSHHHHHHH-TTHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHhhcchHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125889999999988888888888888876 45566667889999988888888888888888888888888888877
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhh
Q 019249 261 VSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENV 314 (344)
Q Consensus 261 vssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENv 314 (344)
....+.-+.- .+.+.+..+.=.+|--.=++.|.+|+..=...++.+.+...
T Consensus 258 ~~~~~~e~~~---l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 258 YEEAQKEKQE---LEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 7765544333 34555556665566666677888887766666666654433
No 122
>PRK10244 anti-RssB factor; Provisional
Probab=25.78 E-value=1.9e+02 Score=24.36 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=51.9
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHH
Q 019249 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISV 267 (344)
Q Consensus 188 ~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~v 267 (344)
++|-+.-+.|+|-.+.=+-.|=| .+|-|| .++|-..|+.-+.-.++- +-.-.+.||+-|.+||.-|..+
T Consensus 16 e~esKeL~AQVEAlellitAlL~-~~~~~~-~~~li~~Ie~Ai~~a~~~---------~~~~~~~D~eLL~~~v~~LL~~ 84 (88)
T PRK10244 16 EEESKELTAQVEALELLVTAMLR-TMGKNG-QQELIEQVEGAINAVSKP---------DDSVPDSDTELLLTYVNKLLRH 84 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HhChhh-HHHHHHHHHHHHHHhccc---------cccccchHHHHHHHHHHHHHhh
Confidence 35667788999999998888855 468899 778999998877644321 1223478999999999988765
No 123
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.65 E-value=6.8e+02 Score=26.00 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHhhhhhchhhhHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHH----HH
Q 019249 205 LEEMERFALGTNGILNEMRQRVEDLV-EETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQ----FQ 279 (344)
Q Consensus 205 lEemErfa~gTn~iLneMrqrvedlv-~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekq----fq 279 (344)
|-|+|-| ++||+.+|- ++++--=.....+--..-. ..+-+++..+++..-.+-..|-++..| ..
T Consensus 360 L~EL~aF----------L~qRl~El~~~~~~~l~~~~~~~ap~~lq-~~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik 428 (507)
T PF05600_consen 360 LLELEAF----------LKQRLYELSNEESSSLSFSQFQNAPSILQ-QQTAESIEEMLSAVEEIISQLTNPRTQHLFMIK 428 (507)
T ss_pred HHHHHHH----------HHHHHHHhcccccchHHHHHhhhccHHHH-hcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 280 TIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 280 tiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
+-.+.-+||++...|.=.--..=...+.-+=+-..-+..-+.+-+-+|.++.++||-+
T Consensus 429 ~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~L 486 (507)
T PF05600_consen 429 SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTREL 486 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 124
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.38 E-value=3.2e+02 Score=21.38 Aligned_cols=54 Identities=28% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019249 268 RETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 268 reTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allD 321 (344)
|+-|-++.++.++.+-...+|..--......-.-+=.+.++|+.||-.|..=|+
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777666666654444444444455566677777766654433
No 125
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.34 E-value=4.6e+02 Score=22.89 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=12.4
Q ss_pred hhhhhhhhhHHHHhhhh
Q 019249 196 NQIENMSLKLEEMERFA 212 (344)
Q Consensus 196 ~Qie~ms~klEemErfa 212 (344)
..|+++..|++++....
T Consensus 68 qRId~vd~klDe~~ei~ 84 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEIS 84 (126)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 56888888888875444
No 126
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=25.24 E-value=4.2e+02 Score=28.73 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=52.8
Q ss_pred hHHHHHHHHhhHHHHH----HHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhh
Q 019249 243 NEQELCRVKRDFESLK----NYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTA 318 (344)
Q Consensus 243 nE~elsrvk~dfesLk----syvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~a 318 (344)
||.|.-|.++|||-.. .|---+-. ++.+...--.|..-|++.-.---..|.-+|++|-++.+
T Consensus 26 ~e~ef~rl~k~fed~~ek~~r~~ae~~~--------------~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~ 91 (604)
T KOG3564|consen 26 NEDEFIRLRKDFEDFEEKWKRTDAELGK--------------YKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEA 91 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 6888999999987532 22222323 33333444445566666665556678889999999999
Q ss_pred hcchhHHHHHHHHh
Q 019249 319 LLDKKEAQLLAMNE 332 (344)
Q Consensus 319 llDkKEAqL~AmnE 332 (344)
=+++-|-|++++.+
T Consensus 92 d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 92 DCEKLETQIQLIKD 105 (604)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988765
No 127
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.15 E-value=1.2e+02 Score=28.78 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=27.0
Q ss_pred hchhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019249 213 LGTNGILN-------EMRQRVEDLVEETSRQRQRAAENEQELCRVKRD 253 (344)
Q Consensus 213 ~gTn~iLn-------eMrqrvedlv~EtsrqrqraaenE~elsrvk~d 253 (344)
-+.++||. -.|+|+.+|.+|-.++.+....-..|+..+|.|
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566664 356677777777777766666666666666666
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.97 E-value=4.8e+02 Score=22.99 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 019249 223 RQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLK 258 (344)
Q Consensus 223 rqrvedlv~EtsrqrqraaenE~elsrvk~dfesLk 258 (344)
.++|-++-.+-...+....+.+..|...+.+-..|+
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~ 129 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLE 129 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333
No 129
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=24.12 E-value=1.7e+02 Score=25.99 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccc
Q 019249 22 IWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMA 84 (344)
Q Consensus 22 ~Wk~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMA 84 (344)
.=++.+++.+..++.|++++-++.+-=.-|| +|+++..+=+|++-....| +.|+|+-
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsE--ak~~~~~~e~rI~~L~~~L----~~A~Ii~ 87 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQAIEDVNE--RRRQMARPLRDLRYLAARR----RTAQLMP 87 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCChhH--HHHHHHHHHHHHHHHHHHH----ccCEEEC
Confidence 3355778888888888877666665555666 8899999999998765555 4588874
No 130
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=23.83 E-value=2e+02 Score=21.99 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHhhHHHHHHHHhH------HHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 019249 249 RVKRDFESLKNYVSS------LISVRETLLSSEKQFQTIERLFERLVAKT 292 (344)
Q Consensus 249 rvk~dfesLksyvss------li~vreTllssekqfqtiE~lferLvakt 292 (344)
|||+.|-.+-|.++- --.+|+.|.....+.++|-.+.+.|-...
T Consensus 5 RVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~~ 54 (76)
T PF07568_consen 5 RVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQSE 54 (76)
T ss_pred hHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889998877766642 13478899999999999999999887543
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.53 E-value=6.7e+02 Score=24.21 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q 019249 215 TNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQ 294 (344)
Q Consensus 215 Tn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~q 294 (344)
|+.++..|..++++...|...-..=-.+-+ .-...-+....+-..+-....---...++.+.+|+=-+.|-+...+
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp ---------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 295 LEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 295 LE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
||.+..+.+.+-.+...++=.+.--+-...-++..++-|....
T Consensus 83 le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 83 LEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.24 E-value=1.1e+03 Score=27.65 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHH
Q 019249 252 RDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL 327 (344)
Q Consensus 252 ~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL 327 (344)
++++-||.--...- ++-|...++++.+.+...+.+..+..+||....+++..|-.+=-.+-.|-+.++.+++-+
T Consensus 366 ~ey~rlk~ea~~~~--~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~ 439 (1141)
T KOG0018|consen 366 EEYERLKEEACKEA--LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSY 439 (1141)
T ss_pred HHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444433 777778888888888888888888888888888888888666566666666666666544
No 133
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.03 E-value=5.4e+02 Score=22.87 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhh
Q 019249 255 ESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 255 esLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK 299 (344)
+.||.|+.-.-+||.+|-.-..-+...|.+.+-|..|..+|+.+-
T Consensus 99 e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev 143 (200)
T cd07624 99 PPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEV 143 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888777777789999999999998866543
No 134
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=23.00 E-value=1.3e+02 Score=24.40 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=32.0
Q ss_pred cccccCCCCCCCCCCcCCCCCC--CCCCCcchhhhhhhccCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 019249 101 VGLVDKNGTPLSGWSRNVDLSS--FNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVL 166 (344)
Q Consensus 101 VG~VDk~G~pls~Wsk~~d~ss--~~~~d~~~~~~~~~~~g~~~~~d~~Yv~e~LksV~mVtdvMEsL 166 (344)
-+|+|..|.|=-.|-|++=.++ +++-+..+.+|+...-...+.. +. ...+-+-|..|+.+++..
T Consensus 53 r~Fl~~~Glp~r~~~kHvifap~~~~~y~~~~fPgI~dai~~~~~~-~~-~~~~~~~i~~v~~~i~~A 118 (125)
T PF04253_consen 53 RAFLDPRGLPGRPWYKHVIFAPGRWNGYASWTFPGIRDAIEDKDSS-KD-WEEAQKQISRVAKAIQNA 118 (125)
T ss_dssp HCTB-TTSBTTBTT--BSSEEEETTEEEEEEESHHHHHHHTTGGGT-ST-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCCcccceeeeCCCCCCCCcCcccHHHHHHHHhcccC-ch-HHHHHHHHHHHHHHHHHH
Confidence 3589999999999999985522 1122234555555422221100 11 445555566666665543
No 135
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.56 E-value=1.5e+02 Score=28.15 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCC
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNAS 342 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~s 342 (344)
...+.+..||-||+.||+-++. .....--|++++-+++
T Consensus 91 ~~~~~l~~EN~rLr~LL~~~~~-~~~~~i~A~Vi~r~~~ 128 (283)
T TIGR00219 91 ILTQNLKQENVRLRELLNSPLS-SDEYKISAEVIYLNYD 128 (283)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-ccCCceEEEEEEeCCC
Confidence 3445589999999999987752 2111234455554443
No 136
>PRK03918 chromosome segregation protein; Provisional
Probab=22.56 E-value=9e+02 Score=25.29 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhH
Q 019249 197 QIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEK 276 (344)
Q Consensus 197 Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssek 276 (344)
.++.....+-+..+-+-++=..|...-...++....-..-++..++-+.++......+.-|..-+..+-...+.|-.-..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~ 238 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019249 277 QFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNE 332 (344)
Q Consensus 277 qfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnE 332 (344)
.++..+.=++.+-.+...++.+...-+.++..+..+--.|..+...-+..-.....
T Consensus 239 ~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~ 294 (880)
T PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=22.52 E-value=5.4e+02 Score=24.19 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH------------HhHHHHHHHHHhhhhHHHH-HHHHHHHHH
Q 019249 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNY------------VSSLISVRETLLSSEKQFQ-TIERLFERL 288 (344)
Q Consensus 222 Mrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksy------------vssli~vreTllssekqfq-tiE~lferL 288 (344)
+|..++-|......--.+-..-|+||...+.+|+.|-.- |.-+.+.-|+|..++-.|. .|-++|..|
T Consensus 123 ~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l 202 (211)
T cd07612 123 ARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDL 202 (211)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555432221223356788999999999976432 3334555688999977775 588899888
Q ss_pred Hhhhhcch
Q 019249 289 VAKTTQLE 296 (344)
Q Consensus 289 vakt~qLE 296 (344)
+.-...|+
T Consensus 203 ~~~~~~l~ 210 (211)
T cd07612 203 YNVMKKLE 210 (211)
T ss_pred HHHHHhcc
Confidence 88777665
No 138
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.59 E-value=5.9e+02 Score=22.79 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=9.6
Q ss_pred hHHHHHHHHhhHHHHHH
Q 019249 243 NEQELCRVKRDFESLKN 259 (344)
Q Consensus 243 nE~elsrvk~dfesLks 259 (344)
.+.|+-+++.|++.|..
T Consensus 48 ~~~e~~~L~~d~e~L~~ 64 (158)
T PF09744_consen 48 HEVELELLREDNEQLET 64 (158)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33455566666666654
No 139
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.47 E-value=6.3e+02 Score=23.06 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHh--------------hHHHHHHH
Q 019249 198 IENMSLKLEEMERFALGTNGILNEMRQRVEDLVEE---TSRQRQRAAENEQELCRVKR--------------DFESLKNY 260 (344)
Q Consensus 198 ie~ms~klEemErfa~gTn~iLneMrqrvedlv~E---tsrqrqraaenE~elsrvk~--------------dfesLksy 260 (344)
+..+-++|.++=.+..+...++.+++.-=..+.++ -.+--..-++.|+.+..+++ +-..|++|
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHhhhhHHHHHH
Q 019249 261 VSSLISVRETLLSSEKQFQTI 281 (344)
Q Consensus 261 vssli~vreTllssekqfqti 281 (344)
++.+. +-+.+.|-+|+++
T Consensus 168 ~~~l~---~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 168 AEALK---EEIENAELEFQSV 185 (190)
T ss_pred HHHHH---HHHHHHHHHHHHH
No 140
>PLN02320 seryl-tRNA synthetase
Probab=21.37 E-value=3.5e+02 Score=28.36 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
.+.++|.++=-.|..-+...|+++..+.++-.-+++.-|||
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~ 170 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNM 170 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35567777766777778888888888888888888888885
No 141
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.90 E-value=9.1e+02 Score=24.72 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhh
Q 019249 223 RQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK 302 (344)
Q Consensus 223 rqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qK 302 (344)
.+|+|+.|.+.+--.|. |++.+|+++.+.-.-|.- -|..+|..|+...|-.-.|...|| ..+-
T Consensus 260 ~erLEeqlNd~~elHq~------Ei~~LKqeLa~~EEK~~Y---------qs~eRaRdi~E~~Es~qtRisklE--~~~~ 322 (395)
T PF10267_consen 260 YERLEEQLNDLTELHQN------EIYNLKQELASMEEKMAY---------QSYERARDIWEVMESCQTRISKLE--QQQQ 322 (395)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHHH--HHHh
Confidence 45777777777765553 677788888776554432 245578899999999999999999 2222
Q ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHH
Q 019249 303 EAEVQKLMEENVRLTALLDKKEAQLLA 329 (344)
Q Consensus 303 EaEVQKlMeENvrL~allDkKEAqL~A 329 (344)
-.=||==|.+|.+.+++|-|-=-=|++
T Consensus 323 Qq~~q~e~~~n~~~r~~l~k~inllL~ 349 (395)
T PF10267_consen 323 QQVVQLEGTENSRARALLGKLINLLLT 349 (395)
T ss_pred hhhhhhcccccccHHHHHHHHHHHHHH
Confidence 222344467888888887765433443
No 142
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.59 E-value=1.2e+03 Score=25.94 Aligned_cols=190 Identities=23% Similarity=0.358 Sum_probs=96.8
Q ss_pred ccCCCcccchhhHHHHHHHHHHHHHHHHHHHH------------------HHHHhhhhhhhhhhhhhccHHHHHhhhhhh
Q 019249 137 QLGSSDEQDGAYIGELLKSVQMVTDVMEVLVK------------------RVIMAESETAVEKEKVTLGQEEIRKKANQI 198 (344)
Q Consensus 137 ~~g~~~~~d~~Yv~e~LksV~mVtdvMEsLvK------------------Rvi~AESEtaveKeKv~~~~Eei~rK~~Qi 198 (344)
.+|.....|......-|....+.+..|-+=+- |..-+++..---+..+-..++.+++|...-
T Consensus 259 ~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~ 338 (775)
T PF10174_consen 259 SRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA 338 (775)
T ss_pred hcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555655555556666666776653332 333333333333677777788888877666
Q ss_pred hhhhhhHHHHhhhhhc-hhhhHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHhhHHHHHHHH---------
Q 019249 199 ENMSLKLEEMERFALG-TNGILNEMRQRVEDLVEETSRQ-------RQRAAENEQELCRVKRDFESLKNYV--------- 261 (344)
Q Consensus 199 e~ms~klEemErfa~g-Tn~iLneMrqrvedlv~Etsrq-------rqraaenE~elsrvk~dfesLksyv--------- 261 (344)
+.+-.-++.+ ||-+. -|..|+--.+.++.+-+|-+|. |..----|.+++++....++|-..+
T Consensus 339 ~~Lqsdve~L-r~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 339 EMLQSDVEAL-RFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443 22222 2556666666666666665553 2222223334444444433333222
Q ss_pred -----h----------------HHHHHHHHHhhh--------h----HHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHH
Q 019249 262 -----S----------------SLISVRETLLSS--------E----KQFQTIERLFERLVAKTTQLEGEKMQKEAEVQK 308 (344)
Q Consensus 262 -----s----------------sli~vreTllss--------e----kqfqtiE~lferLvakt~qLE~eK~qKEaEVQK 308 (344)
. ..+.-++.+.+. + -++.+..+-+.+|-++...|+++-..++..+--
T Consensus 418 ~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 418 EKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLED 497 (775)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 111111111111 1 234555566666666666666666666666655
Q ss_pred HHHhhhhhhhhcchhHHHH
Q 019249 309 LMEENVRLTALLDKKEAQL 327 (344)
Q Consensus 309 lMeENvrL~allDkKEAqL 327 (344)
+=++..+|.+-.+|+...|
T Consensus 498 ~kee~s~l~s~~~K~~s~i 516 (775)
T PF10174_consen 498 AKEEASKLASSQEKKDSEI 516 (775)
T ss_pred hhhHHHHHhhccchhhhHH
Confidence 5566666666666655544
No 143
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.42 E-value=50 Score=27.03 Aligned_cols=61 Identities=26% Similarity=0.449 Sum_probs=41.3
Q ss_pred HHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccCC-----ccccccccccccccccccCCCCCC
Q 019249 41 LMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPD-----LAHTSCGIRQLEGVGLVDKNGTPL 111 (344)
Q Consensus 41 l~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~-----LAhtScGIkqlegVG~VDk~G~pl 111 (344)
|.|++++.=.+ .-+.+=-|.||.||.. |.+...-+|+-|+ +++-++|-..-+ .||-||.||
T Consensus 21 l~Ei~~GVyVg-~~s~rVRe~lW~~v~~------~~~~G~a~m~~~~~neqG~~~~t~G~~~r~---~vD~DGl~L 86 (86)
T PF09707_consen 21 LLEIRPGVYVG-NVSARVRERLWERVTE------WIGDGSAVMVWSDNNEQGFDFRTLGDPRRE---PVDFDGLPL 86 (86)
T ss_pred eEecCCCcEEc-CCCHHHHHHHHHHHHh------hCCCccEEEEEccCCCCCEEEEEeCCCCCc---EEecCCCCC
Confidence 45677766644 3344556788988754 4777777887765 566666655555 789999886
No 144
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=20.35 E-value=1.1e+02 Score=22.73 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=31.4
Q ss_pred HHHHHHHHHH-HhHHHHHHHHhhhhcccccCC-ccccccccccccccc
Q 019249 57 KELEVLWRRV-KTTATLLTYLKSKARIMAVPD-LAHTSCGIRQLEGVG 102 (344)
Q Consensus 57 KELevL~rRV-KT~atLLtYLKSKARiMAvP~-LAhtScGIkqlegVG 102 (344)
++|..+.... ...--..+|-++-+.|=+.|. +....=++++++|||
T Consensus 9 ~~la~~~~~~~~~~~r~~aY~~Aa~~i~~l~~~i~~~~~~~~~l~gIG 56 (68)
T PF14716_consen 9 EELADLYELQGGDPFRARAYRRAAAAIKALPYPITSGEEDLKKLPGIG 56 (68)
T ss_dssp HHHHHHHHHTSTSHHHHHHHHHHHHHHHHSSS-HHSHHHHHCTSTTTT
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCHhHhhHHHHHhhCCCCC
Confidence 4455555555 555667899999999988888 332111488899998
No 145
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.16 E-value=1.3e+02 Score=27.02 Aligned_cols=41 Identities=37% Similarity=0.461 Sum_probs=33.3
Q ss_pred hhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHH
Q 019249 290 AKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAM 330 (344)
Q Consensus 290 akt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~Am 330 (344)
..--+||.+|++-..+|.+|=+||-++.--+|.-..-..|+
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468999999999999999999999988777666555444
No 146
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.12 E-value=36 Score=32.13 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.9
Q ss_pred cccccCCccccccccccccccccccC
Q 019249 81 RIMAVPDLAHTSCGIRQLEGVGLVDK 106 (344)
Q Consensus 81 RiMAvP~LAhtScGIkqlegVG~VDk 106 (344)
-+..||.+||.-||-|==-|-||.|+
T Consensus 130 DLiivPGvAFd~~g~RlGhGkGYYD~ 155 (200)
T KOG3093|consen 130 DLIIVPGVAFDRKGARLGHGKGYYDD 155 (200)
T ss_pred eEEEecccccchhhhhccCCcchHHH
Confidence 35678999999999888889999885
No 147
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.07 E-value=5e+02 Score=21.34 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--HhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 019249 223 RQRVEDLVEETSRQRQRAAENEQELCRV--KRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVA 290 (344)
Q Consensus 223 rqrvedlv~EtsrqrqraaenE~elsrv--k~dfesLksyvssli~vreTllssekqfqtiE~lferLva 290 (344)
|.+++.+-..-++...|-..-|+++.-+ +.|+..|+-- +..+|-.+--.+.+++.|.++-+.|.-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~---l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLE---LAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666667777666 7777777654 456777888888889999888887763
No 148
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.05 E-value=1.1e+02 Score=26.34 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHh--hhhhhhhhhhhhccHHHHHhhhhhhhhhhhh-------HHHHhhhhhch
Q 019249 147 AYIGELLKSVQMVTDVMEVLV--KRVIMA--ESETAVEKEKVTLGQEEIRKKANQIENMSLK-------LEEMERFALGT 215 (344)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLv--KRvi~A--ESEtaveKeKv~~~~Eei~rK~~Qie~ms~k-------lEemErfa~gT 215 (344)
.||.-..++.--++--||+-+ ||..+. .-|..++.|==.|- +|+.||..=|.....| |.+.+...=+.
T Consensus 4 t~vEq~~~~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK-~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k~~ 82 (106)
T PF11594_consen 4 TYVEQLIQSFLDVARQMEAFFLQKRFELSAYKPEQVLKEEINELK-EELQRKEQLLQKHYEKIDYWEKLLSDAQNQHKVP 82 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 466677777766666677744 555441 11222222222222 6777776554444444 56666777778
Q ss_pred hhhHHHHHHHHHHH
Q 019249 216 NGILNEMRQRVEDL 229 (344)
Q Consensus 216 n~iLneMrqrvedl 229 (344)
.-|+|+||+|+.++
T Consensus 83 ~evp~e~~~~~~e~ 96 (106)
T PF11594_consen 83 DEVPPEARQRLAEL 96 (106)
T ss_pred hhccchHHHHHHhh
Confidence 88999999999876
Done!