Query 019249
Match_columns 344
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 13:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 91.2 1.1 3.8E-05 47.4 10.9 116 217-332 928-1051(1080)
2 1x79_B RAB GTPase binding effe 89.9 0.97 3.3E-05 37.5 7.3 61 17-77 2-65 (112)
3 3oja_B Anopheles plasmodium-re 89.0 11 0.00036 35.2 14.3 58 99-157 345-409 (597)
4 1i84_S Smooth muscle myosin he 86.7 1.8 6.3E-05 45.4 8.6 21 189-209 857-877 (1184)
5 3vmx_A Voltage-gated hydrogen 86.6 0.67 2.3E-05 33.9 3.7 41 274-321 2-42 (48)
6 1c1g_A Tropomyosin; contractIl 82.0 17 0.00057 28.6 21.7 18 26-43 7-24 (284)
7 3vkg_A Dynein heavy chain, cyt 80.9 32 0.0011 41.0 16.1 154 175-332 1913-2105(3245)
8 3na7_A HP0958; flagellar bioge 77.0 37 0.0013 29.6 13.7 19 241-259 86-104 (256)
9 3oja_B Anopheles plasmodium-re 75.7 19 0.00064 33.6 10.2 29 304-332 537-565 (597)
10 3a2a_A Voltage-gated hydrogen 72.8 2.9 9.8E-05 31.7 3.2 42 273-321 8-49 (58)
11 2fxo_A Myosin heavy chain, car 72.6 36 0.0012 27.4 11.5 61 277-337 63-123 (129)
12 3tnu_B Keratin, type II cytosk 69.7 30 0.001 27.7 8.9 85 225-312 16-104 (129)
13 3mq9_A Bone marrow stromal ant 69.4 68 0.0023 29.3 13.8 58 206-263 359-422 (471)
14 3i00_A HIP-I, huntingtin-inter 68.9 7.9 0.00027 31.9 5.3 63 246-321 16-78 (120)
15 3trt_A Vimentin; cytoskeleton, 67.5 25 0.00084 25.6 7.3 16 216-231 8-23 (77)
16 2ocy_A RAB guanine nucleotide 64.5 69 0.0024 27.6 10.9 95 241-335 16-139 (154)
17 3tnu_A Keratin, type I cytoske 62.1 35 0.0012 27.4 7.9 68 242-312 35-106 (131)
18 3oja_A Leucine-rich immune mol 60.2 81 0.0028 28.9 10.9 32 304-338 452-483 (487)
19 2rm8_A Sensory rhodopsin II tr 59.4 2.5 8.6E-05 29.5 0.6 38 219-263 25-62 (68)
20 3m91_A Proteasome-associated A 57.6 13 0.00045 27.0 4.1 43 296-338 8-50 (51)
21 2p22_C Protein SRN2; endosome, 56.3 94 0.0032 27.1 10.1 55 286-340 96-150 (192)
22 1go4_E MAD1 (mitotic arrest de 56.0 11 0.00036 30.8 3.8 49 211-260 7-57 (100)
23 3i00_A HIP-I, huntingtin-inter 53.9 48 0.0016 27.3 7.4 98 194-291 13-114 (120)
24 3oja_A Leucine-rich immune mol 47.9 1.7E+02 0.0057 26.8 12.5 31 304-334 442-472 (487)
25 3mq7_A Bone marrow stromal ant 47.0 67 0.0023 27.2 7.4 69 263-334 33-101 (121)
26 1m1j_B Fibrinogen beta chain; 46.6 2.2E+02 0.0076 28.1 12.1 56 240-301 137-193 (464)
27 4fjo_A DNA repair protein REV1 45.5 46 0.0016 25.9 5.8 74 218-312 10-88 (97)
28 2w6b_A RHO guanine nucleotide 45.4 24 0.00081 26.6 3.9 35 31-66 16-50 (56)
29 3vu7_H DNA repair protein REV1 44.7 41 0.0014 27.7 5.7 79 213-312 32-115 (124)
30 4dnd_A Syntaxin-10, SYN10; str 42.0 87 0.003 25.7 7.2 60 147-210 67-126 (130)
31 1ses_A Seryl-tRNA synthetase; 40.3 2.1E+02 0.0073 27.0 10.6 66 29-94 39-110 (421)
32 3zx6_A HAMP, methyl-accepting 39.9 2.1E+02 0.0071 25.7 15.2 22 149-170 36-57 (341)
33 3ghg_A Fibrinogen alpha chain; 36.8 1.1E+02 0.0038 31.3 8.4 25 123-147 36-61 (562)
34 3na7_A HP0958; flagellar bioge 36.4 2.1E+02 0.0073 24.8 14.4 51 216-266 52-104 (256)
35 1oao_C CODH, carbon monoxide d 35.6 11 0.00037 39.5 1.0 24 84-107 586-617 (729)
36 3qne_A Seryl-tRNA synthetase, 35.2 79 0.0027 31.2 7.0 40 305-344 72-111 (485)
37 2xdj_A Uncharacterized protein 34.7 1.2E+02 0.0042 23.4 6.7 52 201-252 4-55 (83)
38 2ic6_A Nucleocapsid protein; h 32.8 36 0.0012 26.8 3.4 32 18-49 38-69 (78)
39 4avm_A Bridging integrator 2; 32.8 1.3E+02 0.0045 25.9 7.3 59 241-299 163-234 (237)
40 2k48_A Nucleoprotein; viral pr 31.0 38 0.0013 28.2 3.4 32 18-49 68-99 (107)
41 2c5k_T Syntaxin TLG1, T-snare 31.0 57 0.0019 25.6 4.3 53 147-209 36-88 (95)
42 1ses_A Seryl-tRNA synthetase; 29.3 1.1E+02 0.0039 28.9 6.8 78 261-344 27-104 (421)
43 4a3a_A Amphiphysin; structural 27.9 1.7E+02 0.0057 25.6 7.2 58 241-298 168-238 (243)
44 1wle_A Seryl-tRNA synthetase; 27.8 1.8E+02 0.0063 28.5 8.1 41 304-344 116-156 (501)
45 2dq0_A Seryl-tRNA synthetase; 27.7 1.3E+02 0.0044 28.9 6.9 40 305-344 70-109 (455)
46 3viq_A SWI5-dependent recombin 27.4 1.1E+02 0.0039 25.1 5.6 57 24-80 6-63 (122)
47 3s9g_A Protein hexim1; cyclin 26.7 1.4E+02 0.0047 24.8 5.9 32 222-253 42-80 (104)
48 1x79_B RAB GTPase binding effe 26.2 2.7E+02 0.0094 22.9 8.9 59 195-263 19-77 (112)
49 3qne_A Seryl-tRNA synthetase, 26.0 2.5E+02 0.0084 27.7 8.7 75 18-96 37-119 (485)
50 2bbh_A Divalent cation transpo 25.6 2.1E+02 0.0071 24.0 7.1 58 216-275 185-242 (269)
51 1jnm_A Proto-oncogene C-JUN; B 25.0 54 0.0019 23.4 2.9 42 275-320 18-59 (62)
52 2ic9_A Nucleocapsid protein; h 24.9 58 0.002 26.6 3.4 32 18-49 38-69 (96)
53 1ugo_A BCL2-associated athanog 24.7 67 0.0023 26.0 3.7 48 246-298 19-66 (99)
54 3vkg_A Dynein heavy chain, cyt 24.4 1E+03 0.035 28.9 17.2 91 222-315 2012-2102(3245)
55 1deq_A Fibrinogen (alpha chain 23.8 3.5E+02 0.012 26.6 9.1 88 196-297 67-155 (390)
56 2do5_A Splicing factor 3B subu 23.0 52 0.0018 24.8 2.5 26 36-68 15-40 (58)
57 4fi5_A Nucleoprotein; structur 22.6 67 0.0023 26.9 3.4 31 18-48 55-85 (113)
58 2vh2_A FTSQ, cell division pro 22.4 78 0.0027 27.3 4.0 47 79-126 67-133 (255)
59 1t2k_D Cyclic-AMP-dependent tr 21.9 72 0.0025 22.6 3.1 33 288-320 27-59 (61)
60 1xgw_A Epsin 4; ENTH, enthopro 21.8 28 0.00097 30.1 1.1 48 62-109 86-133 (176)
61 3hnw_A Uncharacterized protein 21.4 3.5E+02 0.012 22.3 9.1 61 234-304 71-131 (138)
62 3nvo_A Zinc transport protein 20.7 1.4E+02 0.0048 25.0 5.1 60 212-274 157-216 (264)
63 1m1j_C Fibrinogen gamma chain; 20.6 2.5E+02 0.0084 27.1 7.3 67 267-335 25-115 (409)
64 2vh1_A FTSQ, cell division pro 20.4 48 0.0016 27.4 2.1 48 79-127 40-108 (220)
65 3t12_B Gliding protein MGLB; G 20.2 11 0.00039 31.1 -1.7 18 98-115 26-43 (136)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.22 E-value=1.1 Score=47.36 Aligned_cols=116 Identities=12% Similarity=0.186 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 019249 217 GILNEMRQRVEDLVEETSRQRQRA----AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKT 292 (344)
Q Consensus 217 ~iLneMrqrvedlv~Etsrqrqra----aenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt 292 (344)
.-|.||++|+++...+...-+++. ..-++|.+.++.|.+.|+.--....+....+.+.+.+....++-++++....
T Consensus 928 ~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889988877766544443 3456788888888888888777777777777777887777777777777666
Q ss_pred hcchhhhhh----hHHHHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019249 293 TQLEGEKMQ----KEAEVQKLMEENVRLTALLDKKEAQLLAMNE 332 (344)
Q Consensus 293 ~qLE~eK~q----KEaEVQKlMeENvrL~allDkKEAqL~AmnE 332 (344)
..||....| -+..|..|=.||-+|..-+|.-+.+++-.++
T Consensus 1008 ~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554332 2355667888898888888887766665554
No 2
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.94 E-value=0.97 Score=37.46 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=53.8
Q ss_pred hhhhHHHHH---HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHh
Q 019249 17 IETHEIWKQ---EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLK 77 (344)
Q Consensus 17 ~~~~~~Wk~---eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLK 77 (344)
.++|+-|++ +.++.+.|+..+.+-.-+.-.++..+-+|.++++.+|..++.+...+|.=|+
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998 6777778999999999999999999999999999999999999999996444
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.04 E-value=11 Score=35.24 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=26.2
Q ss_pred cccccccCCCCCCC-----CCCcCCCCCCCCCCCcchhhhhhhccCC--CcccchhhHHHHHHHHH
Q 019249 99 EGVGLVDKNGTPLS-----GWSRNVDLSSFNGPDEDTWIGISKQLGS--SDEQDGAYIGELLKSVQ 157 (344)
Q Consensus 99 egVG~VDk~G~pls-----~Wsk~~d~ss~~~~d~~~~~~~~~~~g~--~~~~d~~Yv~e~LksV~ 157 (344)
+..-.+|=.|-|+. .|.++....++++.+ ..|.+.....+. ....+..|...+++-+.
T Consensus 345 ~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~cc~~~~~~~~~~~~~~l~ 409 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD-QHCKIDYQLEHGLCCKESDKPYLDRLLQYIA 409 (597)
T ss_dssp CCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCC-CCCCTTCEEETTEEEECCSSHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCChhHHHHHHHHhhhcccccc-ccCCcchhccCCccccCCCccchhHHHHHhh
Confidence 33444555555543 455555554443322 234332222222 12445566666655444
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.69 E-value=1.8 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=9.7
Q ss_pred HHHHhhhhhhhhhhhhHHHHh
Q 019249 189 EEIRKKANQIENMSLKLEEME 209 (344)
Q Consensus 189 Eei~rK~~Qie~ms~klEemE 209 (344)
.++.....+++.+..+++..+
T Consensus 857 ~El~~L~~eL~el~~~L~~le 877 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAE 877 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 5
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=86.60 E-value=0.67 Score=33.92 Aligned_cols=41 Identities=34% Similarity=0.389 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019249 274 SEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 274 sekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allD 321 (344)
||.|.-.+-.++++||+|+++||--=..+| .||.||++||.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~e-------QEieRL~~LLk 42 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKE-------QEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHH-------HHHHHHHHHHH
Confidence 678888888899999999999987766666 46788888874
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=81.98 E-value=17 Score=28.57 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=7.2
Q ss_pred HHHhhhhhHHHHHHHHHh
Q 019249 26 EMERSQFQVDVLQEKLME 43 (344)
Q Consensus 26 eme~~qSQVdvLq~rl~e 43 (344)
.|...+.+++.++.++-+
T Consensus 7 ~~~~l~~~~~~~~~~~~~ 24 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADE 24 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 333334444444444433
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.93 E-value=32 Score=40.99 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=82.4
Q ss_pred hhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhh----hhchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHh
Q 019249 175 SETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERF----ALGTNGILNEMRQRVEDLVEETSRQRQ-------RAAEN 243 (344)
Q Consensus 175 SEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErf----a~gTn~iLneMrqrvedlv~Etsrqrq-------raaen 243 (344)
.|....+.+..-|.+.+..-+.|++.|+.+|++++.- .--|+-+|.+|-.. -.|...++. .+++.
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~----~~~ae~~k~~v~~~~~~~~~~ 1988 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD----QQAAEIKQKDARELQVQLDVR 1988 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999999999999999987653 23344444444322 112222222 22333
Q ss_pred HHHHHHHHhhHH---------------------HHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhh
Q 019249 244 EQELCRVKRDFE---------------------SLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK 302 (344)
Q Consensus 244 E~elsrvk~dfe---------------------sLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qK 302 (344)
+.+....|.+.+ .|...-..|..+++.|-..+.+.+.+.+=|+.++++...|+.+...-
T Consensus 1989 ~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 1989 NKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444442 12222333444445555555555555555555555555555443322
Q ss_pred HH-------HHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019249 303 EA-------EVQKLMEENVRLTALLDKKEAQLLAMNE 332 (344)
Q Consensus 303 Ea-------EVQKlMeENvrL~allDkKEAqL~AmnE 332 (344)
+. =+..|=.|++|-+.-++.-+.|+..+--
T Consensus 2069 ~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2069 KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 22 1233445666666655555555544433
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.98 E-value=37 Score=29.62 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHhhHHHHHH
Q 019249 241 AENEQELCRVKRDFESLKN 259 (344)
Q Consensus 241 aenE~elsrvk~dfesLks 259 (344)
..|..|+..+.++.++++.
T Consensus 86 v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 86 IKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp CSSSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3344444444445444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.66 E-value=19 Score=33.57 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNE 332 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnE 332 (344)
++.+++=.|+.++...+++...++..+.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 33333334444555555555555544443
No 10
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=72.82 E-value=2.9 Score=31.70 Aligned_cols=42 Identities=36% Similarity=0.385 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019249 273 SSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 273 ssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allD 321 (344)
.||+|...+-.+-..|++|+.+||-.-.+||. ||.||++||.
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQ-------EieRL~~LLk 49 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQ-------EIERLNKLLR 49 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 47888888888888999999999988888886 5788988874
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.60 E-value=36 Score=27.40 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhh
Q 019249 277 QFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVM 337 (344)
Q Consensus 277 qfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~m 337 (344)
.+...|..|+||.++-.+||+.-.--+..+...-+.|..|.+--.|-+.++..+.+|+--.
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999998888888888899999999998888888888888876543
No 12
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.75 E-value=30 Score=27.70 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHH----HHHhhhhcchhhhh
Q 019249 225 RVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFE----RLVAKTTQLEGEKM 300 (344)
Q Consensus 225 rvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lfe----rLvakt~qLE~eK~ 300 (344)
++++|-....+..........|++..+|-+.+|..=++++-+-+.. .|.+....|.-|+ .+-++...||.+-.
T Consensus 16 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~---LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 16 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCAN---LQNAIADAEQRGELALKDARNKLAELEEALQ 92 (129)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333333333333344566777788888887777777655543 3555555555443 34455667777777
Q ss_pred hhHHHHHHHHHh
Q 019249 301 QKEAEVQKLMEE 312 (344)
Q Consensus 301 qKEaEVQKlMeE 312 (344)
+--++.+..+.|
T Consensus 93 ~~r~e~~~ql~E 104 (129)
T 3tnu_B 93 KAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666555444
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.38 E-value=68 Score=29.28 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHhhhhhch---hhhHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhhHHHHHHHHhH
Q 019249 206 EEMERFALGT---NGILNEMRQRVEDLVEETSRQ---RQRAAENEQELCRVKRDFESLKNYVSS 263 (344)
Q Consensus 206 EemErfa~gT---n~iLneMrqrvedlv~Etsrq---rqraaenE~elsrvk~dfesLksyvss 263 (344)
..+..+..|. --.|.++.++++.++.+...+ |.....-.+.|.|++.-|-.++.--++
T Consensus 359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 359 TAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 3456666675 346888888888888776544 333444556666666655555444333
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.90 E-value=7.9 Score=31.94 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=47.4
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019249 246 ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLD 321 (344)
Q Consensus 246 elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allD 321 (344)
.+-.++++.+.||..+..+.. |. .+.-..|-.+.++||++-......+|+...||-.|.+-++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~--------E~-----q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT--------ES-----QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777766521 22 2344577788999999999999999999999999987665
No 15
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.47 E-value=25 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 019249 216 NGILNEMRQRVEDLVE 231 (344)
Q Consensus 216 n~iLneMrqrvedlv~ 231 (344)
+.||+|||..-|+++.
T Consensus 8 ~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 8 TAAMRDVRQQYESVAA 23 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999988888764
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.54 E-value=69 Score=27.60 Aligned_cols=95 Identities=23% Similarity=0.246 Sum_probs=63.3
Q ss_pred HHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh-------hcchhhhhhhHHHHHHH----
Q 019249 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKT-------TQLEGEKMQKEAEVQKL---- 309 (344)
Q Consensus 241 aenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt-------~qLE~eK~qKEaEVQKl---- 309 (344)
..-|.+|++.+++.++.+.-++.|-..|+-+-..+.+..+++.=+.+|..+. .+.|+++.+-+.||..|
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888887777777766666666666666654332 34456666666665443
Q ss_pred ------------------HHhhhhhhhhcchhHHHHHHHHhhhh
Q 019249 310 ------------------MEENVRLTALLDKKEAQLLAMNEQCK 335 (344)
Q Consensus 310 ------------------MeENvrL~allDkKEAqL~AmnEQcK 335 (344)
=..|..|.+-|..++.-|..+.+|..
T Consensus 96 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 96 FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777777777777777777754
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.06 E-value=35 Score=27.44 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=37.3
Q ss_pred HhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHH----HHhhhhcchhhhhhhHHHHHHHHHh
Q 019249 242 ENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFER----LVAKTTQLEGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 242 enE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lfer----Lvakt~qLE~eK~qKEaEVQKlMeE 312 (344)
....|++..+|-+.+|..=+.++-+.+. |.|.+....|.-|+. +-++...||.+..+--++.+..+.|
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~---sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKA---SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777766655544 335555555554443 3345667777777666665555444
No 18
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.16 E-value=81 Score=28.90 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhh
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMA 338 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mA 338 (344)
+..+|+++++.. .++++.|-++..-.|-..+|
T Consensus 452 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 452 ARLKKLNGEADL---ALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh---hhHhcccHHHHHHHHHHHHH
Confidence 344555555433 34556666666555544443
No 19
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore, membrane, methylation, photoreceptor protein, receptor; NMR {Natronomonas pharaonis}
Probab=59.43 E-value=2.5 Score=29.49 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhH
Q 019249 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS 263 (344)
Q Consensus 219 LneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvss 263 (344)
+|.|+.++.+++.+....+ +++..-++++|++.++|+.
T Consensus 25 ~n~M~~~L~~~i~~i~~~~-------~~~e~~~~~~e~~~~~~~~ 62 (68)
T 2rm8_A 25 FDEMRQSVRTSLEDAKNAR-------EDAEQAQKRAEEINTELLE 62 (68)
T ss_dssp TTTHHHHTTSSHHHHHHHH-------HHHHHHHHGGGCTTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665554433 3344558899999998863
No 20
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.59 E-value=13 Score=26.95 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=35.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhh
Q 019249 296 EGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMA 338 (344)
Q Consensus 296 E~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mA 338 (344)
|..-.+-.++++.|+.-|-+|.+.|..--.||..|++|..-++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333455678899999999999999999999999999976443
No 21
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=56.32 E-value=94 Score=27.10 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhcc
Q 019249 286 ERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALN 340 (344)
Q Consensus 286 erLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~ 340 (344)
..++...++|+.+-.+|=.+.+..+-.|.-..+|+.+-.+-.....+.|.-+|=+
T Consensus 96 ~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~ 150 (192)
T 2p22_C 96 QALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETT 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777778778878887777788888999888888888888888877643
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.01 E-value=11 Score=30.78 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=40.2
Q ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHhhHHHHHHH
Q 019249 211 FALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCR--VKRDFESLKNY 260 (344)
Q Consensus 211 fa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsr--vk~dfesLksy 260 (344)
|++ ||-=++..|++|+.|-.|-.|-|++-+.-|-+|-+ ++-||.-.++-
T Consensus 7 ~~~-~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TK 57 (100)
T 1go4_E 7 FLF-SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTK 57 (100)
T ss_dssp --C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEE
T ss_pred CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCe
Confidence 344 88889999999999999999999999999999977 66788765543
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.86 E-value=48 Score=27.28 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=45.5
Q ss_pred hhhhhhhhhhhHH----HHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 019249 194 KANQIENMSLKLE----EMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE 269 (344)
Q Consensus 194 K~~Qie~ms~klE----emErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vre 269 (344)
+..+|+.+...++ ++|+|-.=-..+.-.|+-||-.|--|-.-||+-..++=.|.++++.+-+.|+.--..-..+.-
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~ 92 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQR 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456666655554 567776667778888888888888777777766555555566666666655443322222222
Q ss_pred HHhhhhHHHHHHHHHHHHHHhh
Q 019249 270 TLLSSEKQFQTIERLFERLVAK 291 (344)
Q Consensus 270 TllssekqfqtiE~lferLvak 291 (344)
-+.-.|+.=++.|.=|..|-.+
T Consensus 93 ~~~e~E~kAqa~Eerf~KLKe~ 114 (120)
T 3i00_A 93 SLSEIERKAQANEQRYSKLKEK 114 (120)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444444333
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.92 E-value=1.7e+02 Score=26.85 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhh
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQC 334 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQc 334 (344)
.+.+++=+||-|+.-++++-..++.-+++-.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3556677778888877777777777666543
No 25
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.99 E-value=67 Score=27.20 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhh
Q 019249 263 SLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQC 334 (344)
Q Consensus 263 sli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQc 334 (344)
-|.-..|.|+--|-|--|--.-..-|- .-|+.+|+|..+.||+|=.|+-.|..-|.+++|++.-+.-+-
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~---~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355566778888877755554333332 246777888888899999999999999999999887765443
No 26
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.61 E-value=2.2e+02 Score=28.09 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhhhcchhhhhh
Q 019249 240 AAENEQELCRVKRDFESLKNYVSSLISVRETLLSS-EKQFQTIERLFERLVAKTTQLEGEKMQ 301 (344)
Q Consensus 240 aaenE~elsrvk~dfesLksyvssli~vreTllss-ekqfqtiE~lferLvakt~qLE~eK~q 301 (344)
..+|+.-+......+|....|+... +.+. ..++.-++.+++.|..|..+||+.-.+
T Consensus 137 i~en~n~~~~~~~~~e~~~~~i~~~------~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 137 RKDNDIILSEYNTEMELHYNYIKDN------LDNNIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888887643 3322 455666677777888888888776543
No 27
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=45.54 E-value=46 Score=25.85 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHH---HHHHHHHhhhhc
Q 019249 218 ILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIE---RLFERLVAKTTQ 294 (344)
Q Consensus 218 iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE---~lferLvakt~q 294 (344)
=|.++|.-+.+=+. +. .. --..|++.|..|+..+|. +|..+.+. +.|.||+.+...
T Consensus 10 ~l~dvr~~l~~Wv~-~~-----~~-------P~~~DV~~l~~yL~~lv~--------~~~lek~~~vlk~l~rlv~~~~~ 68 (97)
T 4fjo_A 10 EFSDVKTLLKEWIT-TI-----SD-------PMEEDILQVVRYCTDLIE--------EKDLEKLDLVIKYMKRLMQQSVE 68 (97)
T ss_dssp SHHHHHHHHHHHHH-HC-----SS-------CCHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHH-cC-----CC-------CCHHHHHHHHHHHHHHhh--------ccCHHHHHHHHHHHHHHHhcccc
Confidence 36777877777774 11 11 225799999999999974 34444443 448899977644
Q ss_pred c--hhhhhhhHHHHHHHHHh
Q 019249 295 L--EGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 295 L--E~eK~qKEaEVQKlMeE 312 (344)
- .+--.+=...||..|.+
T Consensus 69 ~~W~~A~~~I~~~VQ~~v~~ 88 (97)
T 4fjo_A 69 SVWNMAFDFILDNVQVVLQQ 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 2 22233444567777764
No 28
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=45.39 E-value=24 Score=26.60 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHH
Q 019249 31 QFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRV 66 (344)
Q Consensus 31 qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRV 66 (344)
.-||..|+..+--.|-|++ .|--|+|+||.+.||+
T Consensus 16 kDqV~eL~qe~k~m~k~lE-eEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLE-EEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3466666666666666654 5778999999999998
No 29
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=44.70 E-value=41 Score=27.70 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=50.7
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHH---HHHHHHHHHH
Q 019249 213 LGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQ---TIERLFERLV 289 (344)
Q Consensus 213 ~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfq---tiE~lferLv 289 (344)
+.+..=|.|+|.-+.+-+. + . .. =-..|++.|..|+..||. +|..+ .+=+.|.||+
T Consensus 32 f~g~t~l~evK~lL~~Wv~-s-~----~~-------P~~~DV~~l~~yL~~lVe--------ek~Lek~~~vlk~l~rlv 90 (124)
T 3vu7_H 32 LAGAVEFNDVKTLLREWIT-T-I----SD-------PMEEDILQVVKYCTDLIE--------EKDLEKLDLVIKYMKRLM 90 (124)
T ss_dssp CSSSCSHHHHHHHHHHHHH-H-H----CS-------CCHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHH-c-C----CC-------CCHHHHHHHHHHHHHHhh--------cccHHHHHHHHHHHHHHH
Confidence 4455668899998888884 1 1 11 225699999999999973 34444 3445589999
Q ss_pred hhhhcc--hhhhhhhHHHHHHHHHh
Q 019249 290 AKTTQL--EGEKMQKEAEVQKLMEE 312 (344)
Q Consensus 290 akt~qL--E~eK~qKEaEVQKlMeE 312 (344)
.++..- ..--.+=...||..|.+
T Consensus 91 ~~~~~~~W~~Ay~~I~~~VQ~~m~~ 115 (124)
T 3vu7_H 91 QQSVESVWNMAFDFILDNVQVVLQQ 115 (124)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHHH
Confidence 875442 22233444567777764
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=42.00 E-value=87 Score=25.72 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhh
Q 019249 147 AYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMER 210 (344)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemEr 210 (344)
.+..++..+++-+..=++-|.+=|.++|+. -.|..|+..||.+...-|.+...++.+|+.
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~n----p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEAN----PGKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999988889999999998855 457889999999999889888888888864
No 31
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.33 E-value=2.1e+02 Score=27.01 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHhhhhhhh-cChHHH---HHHHHHHHHHHHhHHHHHHHHhhh--hcccccCCccccccc
Q 019249 29 RSQFQVDVLQEKLMEVKTCIK-DSEEDA---KKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLAHTSCG 94 (344)
Q Consensus 29 ~~qSQVdvLq~rl~evKa~i~-gSeeda---~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LAhtScG 94 (344)
..+.+++.|+++-..+-..|. .+.+++ +.+...|-.++|....-+.=+..+ ...+.||.+.|.|+-
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp 110 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 456778888888877766665 333332 455556666666666555555443 357899999999975
No 32
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=39.86 E-value=2.1e+02 Score=25.66 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019249 149 IGELLKSVQMVTDVMEVLVKRV 170 (344)
Q Consensus 149 v~e~LksV~mVtdvMEsLvKRv 170 (344)
+|.|..++....+-+..++..+
T Consensus 36 ig~l~~~~n~~~~~l~~~i~~v 57 (341)
T 3zx6_A 36 IGILAKSIERLRRSLMRTVGDV 57 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666666666544
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.84 E-value=1.1e+02 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=14.0
Q ss_pred CCCCC-cchhhhhhhccCCCcccchh
Q 019249 123 FNGPD-EDTWIGISKQLGSSDEQDGA 147 (344)
Q Consensus 123 ~~~~d-~~~~~~~~~~~g~~~~~d~~ 147 (344)
|.++| ---|+-+-+.+|.+++++..
T Consensus 36 CaDeDwGvkCPSGCrLQglLdkqErD 61 (562)
T 3ghg_A 36 CSDEDWNYKCPSGCRMKGLIDEVNQD 61 (562)
T ss_dssp CCSSSBTTEEECHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcccchhhhHHhhcCc
Confidence 44444 33466666666666665544
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.37 E-value=2.1e+02 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhHHHHHHHHhHHHH
Q 019249 216 NGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVK--RDFESLKNYVSSLIS 266 (344)
Q Consensus 216 n~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk--~dfesLksyvssli~ 266 (344)
+.-+.++...+..+-.+-..-++|....+..|..|+ ++|..|..=+.++-.
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 444555555666666666666777777777777765 577777776665543
No 35
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=35.58 E-value=11 Score=39.54 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.1
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 019249 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 84 AvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
.+=..+||||| |-..+|||.|||+
T Consensus 586 Sime~P~TsCGCfE~I~~~~Pe~nG~~iV~R~ 617 (729)
T 1oao_C 586 TLMENPMTSCGCFEAIMAILPECNGIMITTRD 617 (729)
T ss_dssp CSSSSCCCCCSCCSEEEEEEGGGTEEEEEETT
T ss_pred EeccCCCccchhHHHHhhhcccCceEEEEecC
Confidence 44456799999 6789999999997
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.23 E-value=79 Score=31.17 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019249 305 EVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 305 EVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
+.+.|+++=-.|..-+...|+++..+.++..-.++.-||+
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3567888878888889999999999999999899988886
No 37
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.66 E-value=1.2e+02 Score=23.41 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=41.0
Q ss_pred hhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 019249 201 MSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKR 252 (344)
Q Consensus 201 ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~ 252 (344)
+..++...|+..-+.|..+-+|.+++++|=.|..+-|=.-.++.-++..+++
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3457777888666788899999999999988888888777777777776665
No 38
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.78 E-value=36 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 019249 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (344)
Q Consensus 18 ~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i~ 49 (344)
+++++=|+-+.++++-|+.|+.||-++|-.|-
T Consensus 38 DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 38 DPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999997653
No 39
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=32.76 E-value=1.3e+02 Score=25.94 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHhHHHHHHHHhhHHHHHH----HHhHHHH--------HHHHHhhhhHHH-HHHHHHHHHHHhhhhcchhhh
Q 019249 241 AENEQELCRVKRDFESLKN----YVSSLIS--------VRETLLSSEKQF-QTIERLFERLVAKTTQLEGEK 299 (344)
Q Consensus 241 aenE~elsrvk~dfesLks----yvssli~--------vreTllssekqf-qtiE~lferLvakt~qLE~eK 299 (344)
...|.++...+++|+.|-+ -+..|+. .-+++......| ..|-++|..|..-+..||.+-
T Consensus 163 ~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~~~ 234 (237)
T 4avm_A 163 AKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLERQH 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4467889999999987543 3333443 445666665554 678888888888888887643
No 40
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.02 E-value=38 Score=28.16 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 019249 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (344)
Q Consensus 18 ~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i~ 49 (344)
+++++=|+-+.++++-|+.||+||-++|-.+-
T Consensus 68 DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 68 DPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999997663
No 41
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.98 E-value=57 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHh
Q 019249 147 AYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEME 209 (344)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemE 209 (344)
.+..++...++-+.+-++-|-+=|.|+|+. +..||.+....+.+...+++.|.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~l~~~i~~lk 88 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKNIKQQLDALK 88 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998877 77778777777777777766663
No 42
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.30 E-value=1.1e+02 Score=28.87 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhcc
Q 019249 261 VSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALN 340 (344)
Q Consensus 261 vssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~ 340 (344)
|+.++..-+-..+...+++.+..--..+-....+ ..+ .+.+.|+++=-.|..-+...|+++.++.++..-.++.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK-----APP-EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554444444444444444433333333333 112 3567888888888889999999999999999999999
Q ss_pred CCCC
Q 019249 341 ASNI 344 (344)
Q Consensus 341 ~sn~ 344 (344)
-||+
T Consensus 101 ipN~ 104 (421)
T 1ses_A 101 VPLP 104 (421)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9986
No 43
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=27.90 E-value=1.7e+02 Score=25.59 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHhhHHHHHH----HHhHHHH--------HHHHHhhhhHHH-HHHHHHHHHHHhhhhcchhh
Q 019249 241 AENEQELCRVKRDFESLKN----YVSSLIS--------VRETLLSSEKQF-QTIERLFERLVAKTTQLEGE 298 (344)
Q Consensus 241 aenE~elsrvk~dfesLks----yvssli~--------vreTllssekqf-qtiE~lferLvakt~qLE~e 298 (344)
...|+|+...+++|+.|-+ -+-.|+. .-+++...+..| ..|.++|..|..-.++|+.+
T Consensus 168 ~kae~el~~Ak~~Ye~lN~~L~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~~~ 238 (243)
T 4a3a_A 168 SKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQ 238 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3477889999999987543 2333333 445666665554 45778888787777777643
No 44
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.85 E-value=1.8e+02 Score=28.46 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019249 304 AEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 304 aEVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
.+.+.|+++=-.|.+-+...|+++.++.++..-.++.-||+
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46778999988899999999999999999999999999986
No 45
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.73 E-value=1.3e+02 Score=28.94 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019249 305 EVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 305 EVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
+.+.|+++=-.|..-+...|+++.++.++..-.++.-||+
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567888878888888899999999999999999999986
No 46
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=27.35 E-value=1.1e+02 Score=25.09 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHH-HHHhhhh
Q 019249 24 KQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLL-TYLKSKA 80 (344)
Q Consensus 24 k~eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLL-tYLKSKA 80 (344)
.++....+.||..|+.+|--+|..+..-...--.+|+.|...-++++-.. .||-..+
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~ 63 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPM 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999988888865222222268999999988887654 4454443
No 47
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.70 E-value=1.4e+02 Score=24.80 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHhh
Q 019249 222 MRQRVEDLVEETSRQRQR-------AAENEQELCRVKRD 253 (344)
Q Consensus 222 Mrqrvedlv~Etsrqrqr-------aaenE~elsrvk~d 253 (344)
+-.+++.+.+|+.|+|+. ..+-|.|+.|++++
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 345777888899988884 33444444444444
No 48
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.17 E-value=2.7e+02 Score=22.87 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=45.2
Q ss_pred hhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhH
Q 019249 195 ANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS 263 (344)
Q Consensus 195 ~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvss 263 (344)
.-|++.+..--.++|.| +.+..||-.-+-+.-+.++..+|+.|.-++..|.-+++-|..
T Consensus 19 ~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 19 NDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666666666666666 666777777777778889999999999999999998887654
No 49
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.01 E-value=2.5e+02 Score=27.70 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhh-----hc-ChHHHHHHHHHHHHHHHhHHHHHHHHhhh--hcccccCCcc
Q 019249 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCI-----KD-SEEDAKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLA 89 (344)
Q Consensus 18 ~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i-----~g-Seeda~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LA 89 (344)
+-++.|++ .+.+++.|+++...+-..| .| .-+..+.|...|-.+++....-+.=+..+ ..++.||-+.
T Consensus 37 ~ld~~~r~----~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 37 AEYKEWVK----LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34445544 4455555555555443322 11 12345667778888888877777766555 4789999999
Q ss_pred ccccccc
Q 019249 90 HTSCGIR 96 (344)
Q Consensus 90 htScGIk 96 (344)
|.|+=+-
T Consensus 113 ~~~vP~g 119 (485)
T 3qne_A 113 HESVVDS 119 (485)
T ss_dssp CTTSCCC
T ss_pred CccCCCC
Confidence 9997643
No 50
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=25.60 E-value=2.1e+02 Score=24.05 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhh
Q 019249 216 NGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSE 275 (344)
Q Consensus 216 n~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllsse 275 (344)
--+|..+..+++++..+--.... .+.=.+|.++|++.-.|+.++.++..+-..|..++
T Consensus 185 ~~~l~~i~~~id~lE~~v~~~~~--~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 185 FVLLEKIDDEIDVLEEEVLERPE--KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555555444322211 23345688889999999999888888877777653
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.04 E-value=54 Score=23.41 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhc
Q 019249 275 EKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALL 320 (344)
Q Consensus 275 ekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~all 320 (344)
.|.-+-++. |-.++..|+.+...=..+|..|..|+..|..+|
T Consensus 18 ~rKk~~~~~----Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 18 KRKLERIAR----LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 445667788888888888888888888887665
No 52
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.93 E-value=58 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 019249 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (344)
Q Consensus 18 ~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i~ 49 (344)
+++++=|+-+.++++-|+.|+.||-++|-.|-
T Consensus 38 DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 38 DPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999997653
No 53
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=24.68 E-value=67 Score=25.97 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=39.8
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhh
Q 019249 246 ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGE 298 (344)
Q Consensus 246 elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~e 298 (344)
-+..|..+|..|...|..++. .+.+++|-.++.+.-|..=|....|.+
T Consensus 19 kI~~I~~ev~~L~~~V~~f~g-----~k~dkey~~L~E~L~k~LLkLD~Iete 66 (99)
T 1ugo_A 19 RLQEIQREVKAIEPQVVGFSG-----LSDDKNYKRLERILTKQLFEIDSVDTE 66 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCC-----CTTSSHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHHHHcCcCcC
Confidence 356677888888888888866 336899999999999999999999877
No 54
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.42 E-value=1e+03 Score=28.90 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhh
Q 019249 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQ 301 (344)
Q Consensus 222 Mrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~q 301 (344)
.|++++.+-.+.....++-++-+.+|..|......|+.-....+.-.+.| +.+.+..++=.+|--.=++.|.|||..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L---~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI---KTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 56677777777666666666777777777777777776666666555544 345555666556666667889999988
Q ss_pred hHHHHHHHHHhhhh
Q 019249 302 KEAEVQKLMEENVR 315 (344)
Q Consensus 302 KEaEVQKlMeENvr 315 (344)
=...++.+-.+...
T Consensus 2089 W~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2089 WEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777654333
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.76 E-value=3.5e+02 Score=26.58 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=45.1
Q ss_pred hhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhh
Q 019249 196 NQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQR-AAENEQELCRVKRDFESLKNYVSSLISVRETLLSS 274 (344)
Q Consensus 196 ~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~Etsrqrqr-aaenE~elsrvk~dfesLksyvssli~vreTllss 274 (344)
..|+.+...|.++-+----++...+.| .+..|+|+. +..||.-...|-.|.|.=..|+. .+|+++|-
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~--------~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk--~~V~~q~~-- 134 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNI--------VELMRGDFAKANNNDNTFKQINEDLRSRIEILR--RKVIEQVQ-- 134 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH--HHHHHHhH--
Confidence 345556666666655443333333332 233334433 45677777777777665555543 23444443
Q ss_pred hHHHHHHHHHHHHHHhhhhcchh
Q 019249 275 EKQFQTIERLFERLVAKTTQLEG 297 (344)
Q Consensus 275 ekqfqtiE~lferLvakt~qLE~ 297 (344)
++..++...+.++.+...||-
T Consensus 135 --~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 135 --RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666654
No 56
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.05 E-value=52 Score=24.76 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHh
Q 019249 36 VLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKT 68 (344)
Q Consensus 36 vLq~rl~evKa~i~gSeeda~KELevL~rRVKT 68 (344)
.||+||-|+-|-|+||-|. |.+|+|+
T Consensus 15 ELQaKLaE~GAPi~g~REE-------lvdRLk~ 40 (58)
T 2do5_A 15 ELQAKLAEIGAPIQGNREE-------LVERLQS 40 (58)
T ss_dssp HHHHHHHHHTCCCCSCHHH-------HHHHHHH
T ss_pred HHHHHHHHhCCcccccHHH-------HHHHHHH
Confidence 5899999999999999765 5666654
No 57
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.55 E-value=67 Score=26.91 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 019249 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCI 48 (344)
Q Consensus 18 ~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i 48 (344)
+++++=|+-+.++++-|+.|+.||-++|-.+
T Consensus 55 DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 55 DPDELNKRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999998665
No 58
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=22.37 E-value=78 Score=27.26 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.5
Q ss_pred hhcccccCCcccccccccccc-----------------ccccccCCCCCCCCCCc---CCCCCCCCCC
Q 019249 79 KARIMAVPDLAHTSCGIRQLE-----------------GVGLVDKNGTPLSGWSR---NVDLSSFNGP 126 (344)
Q Consensus 79 KARiMAvP~LAhtScGIkqle-----------------gVG~VDk~G~pls~Wsk---~~d~ss~~~~ 126 (344)
+.++.+.|-..++++-- ..+ +.+|||.+|+.++.=.. ..+++-+.||
T Consensus 67 ~~~l~~~PwV~~a~V~r-~~P~~L~I~V~Er~PvA~~~~~~~iD~~G~v~~~~~~~~~~~~LP~l~G~ 133 (255)
T 2vh2_A 67 QQQIERLPWIQQASVRK-QWPDELKIHLVEYVPFARWNDLHMVDEQGRSFSVPSERVGKQKLPLLYGP 133 (255)
T ss_dssp HHHTSCCSSEEEEEEEE-ETTTEEEEEEEECCCCBBSSSSCEECTTCCEECCCSSTTCCSCCCEEECS
T ss_pred HHHHHcCCCeeEEEEEE-ECCCeEEEEEEEeeeEEEECCCcEECCCCcEEcccccccccCCCCEEECC
Confidence 46788999998888652 444 56899999998875433 2345444444
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.93 E-value=72 Score=22.60 Aligned_cols=33 Identities=33% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhc
Q 019249 288 LVAKTTQLEGEKMQKEAEVQKLMEENVRLTALL 320 (344)
Q Consensus 288 Lvakt~qLE~eK~qKEaEVQKlMeENvrL~all 320 (344)
|-.++..|+.+...-..+|+.|-.|+..|..+|
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566777777777777888888877776543
No 60
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=21.76 E-value=28 Score=30.13 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=34.0
Q ss_pred HHHHHHhHHHHHHHHhhhhcccccCCccccccccccccccccccCCCC
Q 019249 62 LWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGT 109 (344)
Q Consensus 62 L~rRVKT~atLLtYLKSKARiMAvP~LAhtScGIkqlegVG~VDk~G~ 109 (344)
-||+|--+=+||.||---.-=-.|+++-.--.=|+.|...-|+|.+|.
T Consensus 86 ~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~ 133 (176)
T 1xgw_A 86 NWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGK 133 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSC
T ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCC
Confidence 488888889999999765554455555444455788887778887764
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.37 E-value=3.5e+02 Score=22.32 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHH
Q 019249 234 SRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEA 304 (344)
Q Consensus 234 srqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEa 304 (344)
-.-++...+-++++.....+..+||+ -|++.++-+-+++++... |..+...|+.+...-|+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~---el~~~~~k~e~~~~e~~~-------l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKH---ELIAAQIKAESSAKEIKE-------LKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555 344455544444444443 33444444444444443
No 62
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.66 E-value=1.4e+02 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=38.3
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhh
Q 019249 212 ALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSS 274 (344)
Q Consensus 212 a~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllss 274 (344)
+-+---+|.++-.+++++.++--.. ..+.=.+|..+||+.-.|+.|+.++-.+-..|...
T Consensus 157 vd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 216 (264)
T 3nvo_A 157 TDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASE 216 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 3333445555666666655444322 23334578889999999999999988888887765
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.55 E-value=2.5e+02 Score=27.15 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHhhhhH----HHHHHHHHHHHHHhhhhcch--------------------hhhhhhHHHHHHHHHhhhhhhhhcch
Q 019249 267 VRETLLSSEK----QFQTIERLFERLVAKTTQLE--------------------GEKMQKEAEVQKLMEENVRLTALLDK 322 (344)
Q Consensus 267 vreTllssek----qfqtiE~lferLvakt~qLE--------------------~eK~qKEaEVQKlMeENvrL~allDk 322 (344)
+..+|+.-|+ +|+.||.+..+|-.+|+... .+.+ -...+|++++=.+|.+++-.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~--tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL--TQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHH--HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhH--HHHHHHHHHHHHHHHHHhcc
Q ss_pred hHHHHHHHHhhhh
Q 019249 323 KEAQLLAMNEQCK 335 (344)
Q Consensus 323 KEAqL~AmnEQcK 335 (344)
.++++..|..+.+
T Consensus 103 ~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 103 HENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
No 64
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=20.38 E-value=48 Score=27.39 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=31.9
Q ss_pred hhccc-ccCCcccccccccccc-----------------ccccccCCCCCCCCCCcC---CCCCCCCCCC
Q 019249 79 KARIM-AVPDLAHTSCGIRQLE-----------------GVGLVDKNGTPLSGWSRN---VDLSSFNGPD 127 (344)
Q Consensus 79 KARiM-AvP~LAhtScGIkqle-----------------gVG~VDk~G~pls~Wsk~---~d~ss~~~~d 127 (344)
+.++. +.|-..++++- |..+ +-+|||.+|+.++.=... .+++-+.||+
T Consensus 40 ~~~l~~~~P~V~~a~V~-r~~P~~l~I~V~Er~pvA~~~~~~~id~~G~v~~~~~~~~~~~~lP~l~G~~ 108 (220)
T 2vh1_A 40 QTQIEQRLPWIKQVSVR-KQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPE 108 (220)
T ss_dssp HHHHHHHCTTEEEEEEE-EETTTEEEEEEEECCEEEEETTTEEEETTCCEEECCGGGTTTCCCCEEECST
T ss_pred HHHHHhcCCCEEEEEEE-EeCCCceEEEEEEeccEEEECCCcEECCCCeEEecCccccccCCCcEEECCC
Confidence 46777 88888888876 5555 238999999988754432 1455555543
No 65
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=20.25 E-value=11 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=14.1
Q ss_pred ccccccccCCCCCCCCCC
Q 019249 98 LEGVGLVDKNGTPLSGWS 115 (344)
Q Consensus 98 legVG~VDk~G~pls~Ws 115 (344)
..++-+||+||-|++++.
T Consensus 26 v~~~~lvd~dG~vIa~~~ 43 (136)
T 3t12_B 26 ARYALLIDRKGFVLAHKE 43 (136)
T ss_dssp CSEEEEEETTC-CCEEEE
T ss_pred CeEEEEEcCCCCEEEEec
Confidence 356779999999999875
Done!