BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019250
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CNC|A Chain A, Family 10 Xylanase
          Length = 386

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 168 DP-TVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKD 210
           DP T G P+    K A  Y  L +L ++H+   +RV F G+  D
Sbjct: 299 DPYTKGLPQEMQDKLAKRYEDLFKLFIKHSDKIDRVTFWGVSDD 342


>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
           Complex With Xylopentaose
 pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
           Complex With 4-O-Methyl Glucuronic Acid
 pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
           Complex With Arabinofuranose Alpha-1,3 Linked To
           Xylobiose
 pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
           Complex With Arabinofuranose Alpha 1,3 Linked To
           Xylotriose
          Length = 378

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 168 DP-TVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKD 210
           DP T G P+    K A  Y  L +L ++H+   +R  F G+  D
Sbjct: 290 DPYTKGLPQEMQDKLAKRYEDLFKLFIKHSDKIDRATFWGVSDD 333


>pdb|1LML|A Chain A, Leishmanolysin
          Length = 478

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 167 GDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRGLCKAANEEHAR-- 224
           G P VG   +     AS Y QL+  ++ H +M   + F G   +D  +   AN  + R  
Sbjct: 137 GHPAVGVINIPAANIASRYDQLVTRVVTH-EMAHALGFSGPFFEDARI--VANVPNVRGK 193

Query: 225 --DLPIMNGIKEDIKATGVLDCGSPAYHE 251
             D+P++N      KA     C +  Y E
Sbjct: 194 NFDVPVINSSTAVAKAREQYGCDTLEYLE 222


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,232,019
Number of Sequences: 62578
Number of extensions: 362988
Number of successful extensions: 877
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 6
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)