BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019250
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME
PE=1 SV=2
Length = 1987
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 26/94 (27%)
Query: 198 MEERVV------FPGLEKDDRGLCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHE 251
++ERV+ FPG E DRG C + GV D G+ H+
Sbjct: 42 VDERVINQDLNGFPGGEFVDRGFCNTG-----------------VDHNGVFDHGA---HQ 81
Query: 252 ALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEAT 285
+ NLS+ + SL + + ERDLL E T
Sbjct: 82 GVTNLSMMINSLAGSHAQAWSNSERDLLGRSEVT 115
>sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans
(strain WO-1) GN=IRC22-1 PE=3 SV=1
Length = 239
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 81 IFESEVPTVLRVGSESVSGSRQT---LLDFVESKFPEPSLNNIGDADDGDEVSPRVV 134
IF + T+ V +GS+QT L+D++ + PE S N++ + ++GD V+ + V
Sbjct: 6 IFTAFAATIATVAGYETTGSKQTVDILIDYIIKETPELSQNDVANWENGDTVTLQYV 62
>sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans
(strain WO-1) GN=IRC22-2 PE=3 SV=1
Length = 239
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 81 IFESEVPTVLRVGSESVSGSRQT---LLDFVESKFPEPSLNNIGDADDGDEVSPRVV 134
IF + T+ V +GS+QT L+D++ + PE S N++ + ++GD V+ + V
Sbjct: 6 IFTAFAATIATVAGYETTGSKQTVDILIDYIIKETPELSQNDVANWENGDTVTLQYV 62
>sp|Q59XW9|IR222_CANAL Increased recombination centers protein 22-2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1
Length = 239
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 81 IFESEVPTVLRVGSESVSGSRQT---LLDFVESKFPEPSLNNIGDADDGDEVSPRVV 134
IF + T+ V +GS+QT L+D++ + PE S N++ + ++GD V+ + V
Sbjct: 6 IFTAFAATIATVAGYETTGSKQTVDILIDYIIKETPELSQNDVANWENGDTVTLQYV 62
>sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1
Length = 239
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 81 IFESEVPTVLRVGSESVSGSRQT---LLDFVESKFPEPSLNNIGDADDGDEVSPRVV 134
IF + T+ V +GS+QT L+D++ + PE S N++ + ++GD V+ + V
Sbjct: 6 IFTAFAATIATVAGYETTGSKQTVDILIDYIIKETPELSQNDVANWENGDTVTLQYV 62
>sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=IRC22 PE=3 SV=1
Length = 237
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 81 IFESEVPTVLRVGSESVSGSRQT---LLDFVESKFPEPSLNNIGDADDGDEVSPRVV 134
IF T+ V +GS+QT L+D+V + PE S N++ + ++GD V+ + V
Sbjct: 6 IFTVFAATIATVAGYETTGSKQTVDILIDYVIKETPELSQNDVANWENGDTVTLQYV 62
>sp|O67763|RPOC_AQUAE DNA-directed RNA polymerase subunit beta' OS=Aquifex aeolicus
(strain VF5) GN=rpoC PE=3 SV=1
Length = 1574
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 221 EHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSV 258
EH +D+PI IKEDI++T + + +ALR L +
Sbjct: 317 EHKKDIPIFEKIKEDIRSTVLREISEARIRKALRTLQL 354
>sp|C5BF83|YTFE_EDWI9 Iron-sulfur cluster repair protein YtfE OS=Edwardsiella ictaluri
(strain 93-146) GN=ytfE PE=3 SV=1
Length = 221
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 35/164 (21%)
Query: 175 KMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRG-----LCK----AANEEHARD 225
K+ ++ A+ +S L+L++ +Q+ E P +D R LC ++ H
Sbjct: 34 KLTLQRAAARHS--LDLVMLESQLAELDSTPDQHRDWRQAPLDELCAFIVTRYHQRHRDQ 91
Query: 226 LPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEAT 285
LP + + + ++ G P R L+ +L SL++ H +EER L PL+E
Sbjct: 92 LPELVLMAQKVEQVHTGKTGCP------RGLAKQLDSLRQELDSHMMKEERILFPLIEQG 145
Query: 286 ELSTEQQKRTLAQC---VSVMQGTHS------RLFNFFLEGLTP 320
E A+C +SVM+ H + F + +TP
Sbjct: 146 E---------GARCHGPISVMEHEHRDAGELLDVIRFLTDNMTP 180
>sp|B2J8F0|GATB_NOSP7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=gatB PE=3 SV=1
Length = 491
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 82 FESEVPTVLRVGSESVSGSRQTLLDFVESKFP------EPSLNNIGDADDGDEVSPRVVR 135
E + ++ GS+ +SGS +L+D+ + P EP L + +A + E R+VR
Sbjct: 136 MEEDAGKLVHAGSDRLSGSSYSLVDYNRAGIPLVEIVSEPDLRSGLEAAEYAEELRRIVR 195
Query: 136 MM-----RMQHGSLRWHLARMVR 153
+ MQ GSLR + VR
Sbjct: 196 YLGVSDGNMQEGSLRCDVNISVR 218
>sp|B5YHK1|SYH_THEYD Histidine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=hisS PE=3 SV=1
Length = 420
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 241 VLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDL 278
VLDC P+ E+L+N + + L + CKEHF +++L
Sbjct: 205 VLDCKVPSCKESLKNTPLIVDFLCQDCKEHFLSLQKEL 242
>sp|Q47HK2|DNAK_DECAR Chaperone protein DnaK OS=Dechloromonas aromatica (strain RCB)
GN=dnaK PE=3 SV=1
Length = 645
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 219 NEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEE 275
N E AR P + G ED G + CG+PA +A+ N L ++++ FEE+E
Sbjct: 29 NAEGARTTPSIIGYTED----GEILCGAPAKRQAVTNPKNTLYAVKRLIGRRFEEKE 81
>sp|C6DEY0|RAPA_PECCP RNA polymerase-associated protein RapA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rapA PE=3
SV=1
Length = 967
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 32 APYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDNPIFE-------S 84
A Y V + + TP+V L + L FA L RF + E +
Sbjct: 293 AEYQAVETLARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFLAEQQQYRPVA 352
Query: 85 EVPTVLRVGSESVSGSRQTLLDFVESKFPEPSLNNIG-DADDGDEVSPRVVRMMRMQHGS 143
+ T+L G ++ + L D + + EP L I D+DD + ++ M+ +HG+
Sbjct: 353 DAVTLLLAGEKAQTAELNALSDLLGEQDIEPLLKAINSDSDDNQKARQELIAMLMDRHGT 412
Query: 144 LR 145
R
Sbjct: 413 SR 414
>sp|Q499B3|KANL3_DANRE KAT8 regulatory NSL complex subunit 3 OS=Danio rerio GN=kansl3 PE=2
SV=1
Length = 835
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 57 LTAYVRFALLYKSISPRFIPCDNPIFESEVPTVLRVGSESVSGSRQTLLDFVESKFPEPS 116
+TA V ++IS D+P+ + + P + VG ++ S + + +F E + S
Sbjct: 368 MTAVVCLGFPLQTISGPRGDVDDPLLDMKTPVLFVVGQNALQCSPENMEEFREKIRADNS 427
Query: 117 LNNIGDADD 125
L +G ADD
Sbjct: 428 LVVVGGADD 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,438,071
Number of Sequences: 539616
Number of extensions: 5015365
Number of successful extensions: 17378
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 17340
Number of HSP's gapped (non-prelim): 60
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)