Query 019250
Match_columns 344
No_of_seqs 285 out of 1259
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0868 Glutathione S-transfer 99.9 6.9E-27 1.5E-31 210.7 5.0 116 46-162 5-140 (217)
2 KOG0406 Glutathione S-transfer 99.9 6.5E-24 1.4E-28 198.5 11.0 148 44-220 7-165 (231)
3 PRK09481 sspA stringent starva 99.9 2.4E-21 5.1E-26 175.5 12.6 156 41-226 5-168 (211)
4 PRK15113 glutathione S-transfe 99.8 5.3E-19 1.2E-23 160.5 15.6 77 45-122 4-96 (214)
5 cd03061 GST_N_CLIC GST_N famil 99.8 3E-19 6.6E-24 145.6 7.5 77 34-116 6-90 (91)
6 COG0625 Gst Glutathione S-tran 99.8 2.1E-18 4.5E-23 155.6 11.5 75 47-122 1-86 (211)
7 PLN02473 glutathione S-transfe 99.8 7.8E-18 1.7E-22 151.6 14.5 76 46-122 2-90 (214)
8 TIGR00862 O-ClC intracellular 99.8 8.3E-18 1.8E-22 158.0 14.1 160 34-228 3-184 (236)
9 PRK10357 putative glutathione 99.7 1.6E-17 3.4E-22 148.4 11.8 75 47-122 1-84 (202)
10 PF13417 GST_N_3: Glutathione 99.7 1.2E-17 2.6E-22 128.8 3.9 67 49-116 1-75 (75)
11 PRK10542 glutathionine S-trans 99.7 8E-17 1.7E-21 143.2 9.6 74 47-122 1-88 (201)
12 PLN02378 glutathione S-transfe 99.7 2.3E-16 5E-21 143.7 11.9 80 34-118 3-90 (213)
13 PLN02395 glutathione S-transfe 99.7 7.3E-16 1.6E-20 138.7 12.1 75 46-122 2-89 (215)
14 PRK13972 GSH-dependent disulfi 99.7 1.7E-16 3.8E-21 143.7 7.5 73 46-122 1-91 (215)
15 PRK11752 putative S-transferas 99.6 6.5E-16 1.4E-20 146.1 10.9 75 44-122 42-137 (264)
16 PLN02817 glutathione dehydroge 99.6 2.7E-15 5.8E-20 142.9 14.4 87 27-118 49-143 (265)
17 cd03059 GST_N_SspA GST_N famil 99.6 3.8E-16 8.1E-21 118.0 6.9 65 47-112 1-73 (73)
18 PRK10387 glutaredoxin 2; Provi 99.6 3.2E-15 7E-20 133.8 14.0 71 47-118 1-79 (210)
19 cd03041 GST_N_2GST_N GST_N fam 99.6 7.3E-16 1.6E-20 119.6 7.5 66 46-112 1-77 (77)
20 cd03058 GST_N_Tau GST_N family 99.6 6.3E-16 1.4E-20 118.2 6.7 65 47-112 1-74 (74)
21 cd03052 GST_N_GDAP1 GST_N fami 99.6 5.5E-16 1.2E-20 119.9 5.9 62 47-109 1-73 (73)
22 TIGR01262 maiA maleylacetoacet 99.6 1.6E-15 3.4E-20 135.8 9.4 74 48-122 1-86 (210)
23 cd03037 GST_N_GRX2 GST_N famil 99.6 9.6E-16 2.1E-20 116.3 6.6 63 47-110 1-71 (71)
24 cd03045 GST_N_Delta_Epsilon GS 99.6 2.1E-15 4.6E-20 114.4 6.2 63 47-110 1-74 (74)
25 cd03053 GST_N_Phi GST_N family 99.6 3.2E-15 6.9E-20 114.2 7.0 65 46-111 1-76 (76)
26 cd03080 GST_N_Metaxin_like GST 99.6 5.3E-15 1.2E-19 114.0 8.2 67 46-113 1-75 (75)
27 cd03048 GST_N_Ure2p_like GST_N 99.6 4.6E-15 9.9E-20 115.3 6.8 67 46-114 1-81 (81)
28 cd03050 GST_N_Theta GST_N fami 99.6 4.5E-15 9.7E-20 114.0 6.6 65 47-112 1-76 (76)
29 cd03055 GST_N_Omega GST_N fami 99.6 7.5E-15 1.6E-19 117.2 7.5 65 44-109 16-89 (89)
30 cd03040 GST_N_mPGES2 GST_N fam 99.5 1.6E-14 3.4E-19 111.0 7.1 66 46-112 1-76 (77)
31 cd03060 GST_N_Omega_like GST_N 99.5 1.1E-14 2.3E-19 110.9 6.1 60 48-108 2-70 (71)
32 cd03051 GST_N_GTT2_like GST_N 99.5 1.1E-14 2.4E-19 109.4 5.3 62 47-109 1-74 (74)
33 cd03042 GST_N_Zeta GST_N famil 99.5 1.9E-14 4.1E-19 108.5 6.4 62 47-109 1-73 (73)
34 TIGR02182 GRXB Glutaredoxin, G 99.5 1E-13 2.2E-18 126.2 12.2 71 48-119 1-79 (209)
35 cd03047 GST_N_2 GST_N family, 99.5 1.8E-14 3.9E-19 110.0 5.9 62 47-109 1-73 (73)
36 cd03057 GST_N_Beta GST_N famil 99.5 2.8E-14 6.1E-19 109.6 6.5 65 47-113 1-77 (77)
37 cd03056 GST_N_4 GST_N family, 99.5 3.2E-14 7E-19 107.0 6.2 62 47-109 1-73 (73)
38 cd03046 GST_N_GTT1_like GST_N 99.5 3.9E-14 8.5E-19 107.7 6.7 65 47-113 1-76 (76)
39 cd03049 GST_N_3 GST_N family, 99.5 3.2E-14 6.9E-19 108.3 5.7 62 47-109 1-73 (73)
40 cd03038 GST_N_etherase_LigE GS 99.5 6.6E-14 1.4E-18 109.8 6.8 61 52-113 13-84 (84)
41 cd03039 GST_N_Sigma_like GST_N 99.5 1.1E-13 2.4E-18 105.2 6.8 63 47-110 1-72 (72)
42 cd03076 GST_N_Pi GST_N family, 99.5 1.1E-13 2.5E-18 106.2 6.9 63 47-110 2-72 (73)
43 PF13409 GST_N_2: Glutathione 99.5 5.5E-14 1.2E-18 107.6 4.7 57 54-111 1-70 (70)
44 cd03044 GST_N_EF1Bgamma GST_N 99.5 1E-13 2.3E-18 106.6 5.8 62 48-110 2-74 (75)
45 cd03054 GST_N_Metaxin GST_N fa 99.4 2.1E-13 4.6E-18 103.8 7.2 57 54-111 15-72 (72)
46 cd03077 GST_N_Alpha GST_N fami 99.4 1.3E-12 2.9E-17 102.1 7.5 66 47-113 2-77 (79)
47 KOG0867 Glutathione S-transfer 99.4 3.4E-12 7.4E-17 118.6 11.0 76 46-122 2-90 (226)
48 cd03043 GST_N_1 GST_N family, 99.3 1.9E-12 4.1E-17 99.8 6.3 57 51-108 6-72 (73)
49 cd00570 GST_N_family Glutathio 99.3 3E-12 6.5E-17 92.6 6.7 62 47-109 1-71 (71)
50 cd03075 GST_N_Mu GST_N family, 99.3 4.3E-12 9.3E-17 100.2 6.3 64 48-112 2-82 (82)
51 PF02798 GST_N: Glutathione S- 99.2 1.3E-11 2.8E-16 95.9 5.1 62 46-110 2-76 (76)
52 PTZ00057 glutathione s-transfe 99.2 3.5E-11 7.5E-16 108.8 8.0 68 46-114 4-85 (205)
53 KOG4420 Uncharacterized conser 99.1 4.1E-11 8.8E-16 114.2 4.2 77 44-121 24-112 (325)
54 cd03079 GST_N_Metaxin2 GST_N f 98.9 4.6E-09 9.9E-14 82.8 6.9 62 47-111 11-74 (74)
55 PF01814 Hemerythrin: Hemeryth 98.8 4.7E-08 1E-12 79.6 11.8 100 176-282 31-133 (133)
56 KOG1422 Intracellular Cl- chan 98.8 8.6E-09 1.9E-13 95.7 7.4 82 33-119 3-92 (221)
57 PLN02907 glutamate-tRNA ligase 98.8 3.3E-08 7.2E-13 106.3 12.6 70 47-122 3-73 (722)
58 TIGR02190 GlrX-dom Glutaredoxi 98.6 1.4E-07 3E-12 73.8 7.7 64 44-108 7-78 (79)
59 PRK10638 glutaredoxin 3; Provi 98.6 1.1E-07 2.4E-12 74.7 6.1 62 46-108 3-73 (83)
60 PRK10329 glutaredoxin-like pro 98.5 2.8E-07 6E-12 73.2 5.9 55 46-100 2-64 (81)
61 cd03029 GRX_hybridPRX5 Glutare 98.4 1.2E-06 2.5E-11 66.8 7.4 63 46-109 2-72 (72)
62 COG2999 GrxB Glutaredoxin 2 [P 98.4 8.3E-07 1.8E-11 81.1 7.3 178 47-235 1-201 (215)
63 TIGR02196 GlrX_YruB Glutaredox 98.3 1.2E-06 2.7E-11 64.6 5.9 62 46-108 1-73 (74)
64 cd03078 GST_N_Metaxin1_like GS 98.2 3.7E-06 8E-11 65.5 6.9 58 53-111 14-72 (73)
65 TIGR03652 FeS_repair_RIC iron- 98.2 9.3E-06 2E-10 75.4 10.5 128 141-282 80-216 (216)
66 PRK10992 iron-sulfur cluster r 98.2 2.3E-05 5E-10 73.4 13.1 130 141-284 84-218 (220)
67 cd02066 GRX_family Glutaredoxi 98.2 3.3E-06 7.2E-11 61.8 5.5 60 47-107 2-70 (72)
68 cd02976 NrdH NrdH-redoxin (Nrd 98.2 3E-06 6.6E-11 62.5 4.9 55 47-101 2-65 (73)
69 cd03027 GRX_DEP Glutaredoxin ( 98.2 3.3E-06 7.1E-11 64.6 5.1 56 45-100 1-65 (73)
70 KOG1695 Glutathione S-transfer 98.1 5.5E-05 1.2E-09 70.5 13.7 73 46-122 3-83 (206)
71 KOG3029 Glutathione S-transfer 98.1 5.9E-06 1.3E-10 80.2 5.9 79 25-108 73-157 (370)
72 cd03418 GRX_GRXb_1_3_like Glut 98.0 1.5E-05 3.2E-10 60.5 6.7 62 47-109 2-73 (75)
73 TIGR02194 GlrX_NrdH Glutaredox 98.0 7.8E-06 1.7E-10 62.5 4.9 49 47-95 1-57 (72)
74 TIGR02181 GRX_bact Glutaredoxi 98.0 1.7E-05 3.7E-10 61.2 6.3 63 47-110 1-72 (79)
75 TIGR02200 GlrX_actino Glutared 97.7 7.1E-05 1.5E-09 56.3 5.9 64 46-109 1-76 (77)
76 PRK11200 grxA glutaredoxin 1; 97.7 0.00011 2.5E-09 57.7 7.2 67 46-113 2-84 (85)
77 COG0695 GrxC Glutaredoxin and 97.6 0.00022 4.8E-09 56.5 7.3 61 46-107 2-73 (80)
78 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00039 8.5E-09 55.3 7.1 66 47-113 2-83 (86)
79 PF00462 Glutaredoxin: Glutare 97.5 0.00014 2.9E-09 53.5 3.8 51 47-97 1-60 (60)
80 TIGR02189 GlrX-like_plant Glut 97.4 0.00075 1.6E-08 55.4 8.0 62 45-107 8-81 (99)
81 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0022 4.7E-08 49.1 7.8 63 47-110 2-76 (82)
82 PRK13276 cell wall biosynthesi 97.1 0.0038 8.3E-08 59.0 10.5 126 144-282 90-223 (224)
83 PHA03050 glutaredoxin; Provisi 97.0 0.0033 7.2E-08 52.7 8.1 61 45-106 13-88 (108)
84 TIGR00365 monothiol glutaredox 97.0 0.0021 4.5E-08 52.6 6.7 63 45-108 12-88 (97)
85 PF10568 Tom37: Outer mitochon 97.0 0.0033 7.1E-08 49.3 7.4 54 54-108 13-71 (72)
86 cd03028 GRX_PICOT_like Glutare 96.9 0.003 6.6E-08 50.6 6.7 63 46-109 9-85 (90)
87 TIGR02180 GRX_euk Glutaredoxin 96.9 0.0048 1.1E-07 47.1 7.4 63 47-110 1-77 (84)
88 KOG4244 Failed axon connection 96.5 0.007 1.5E-07 58.6 7.1 77 45-122 44-129 (281)
89 cd03032 ArsC_Spx Arsenate Redu 96.0 0.0083 1.8E-07 50.3 4.3 33 46-78 1-33 (115)
90 PRK01655 spxA transcriptional 96.0 0.0087 1.9E-07 51.6 4.3 33 46-78 1-33 (131)
91 cd03036 ArsC_like Arsenate Red 95.9 0.0088 1.9E-07 49.9 3.7 32 47-78 1-32 (111)
92 PRK12759 bifunctional gluaredo 95.8 0.022 4.7E-07 58.0 6.9 72 46-118 3-94 (410)
93 cd02977 ArsC_family Arsenate R 95.7 0.012 2.6E-07 48.1 3.8 32 47-78 1-32 (105)
94 COG2846 Regulator of cell morp 95.7 0.1 2.2E-06 48.9 10.1 121 149-283 93-218 (221)
95 PRK12559 transcriptional regul 95.1 0.025 5.5E-07 48.9 4.1 33 46-78 1-33 (131)
96 PRK13344 spxA transcriptional 95.1 0.031 6.8E-07 48.4 4.4 33 46-78 1-33 (132)
97 TIGR01617 arsC_related transcr 95.0 0.028 6.1E-07 47.1 3.9 32 47-78 1-32 (117)
98 cd03031 GRX_GRX_like Glutaredo 94.6 0.1 2.3E-06 46.3 6.5 60 47-107 2-80 (147)
99 COG3945 Uncharacterized conser 94.4 0.066 1.4E-06 49.3 4.9 102 195-304 59-164 (189)
100 cd02973 TRX_GRX_like Thioredox 94.1 0.085 1.8E-06 39.0 4.2 53 46-98 2-64 (67)
101 PRK10824 glutaredoxin-4; Provi 94.1 0.18 3.8E-06 43.1 6.7 61 46-107 16-90 (115)
102 cd03033 ArsC_15kD Arsenate Red 93.5 0.096 2.1E-06 44.3 4.1 31 47-77 2-32 (113)
103 cd03035 ArsC_Yffb Arsenate Red 93.4 0.092 2E-06 43.7 3.8 32 47-78 1-32 (105)
104 PRK10853 putative reductase; P 93.1 0.14 2.9E-06 43.7 4.3 32 46-77 1-32 (118)
105 KOG2903 Predicted glutathione 92.9 0.4 8.7E-06 46.9 7.6 28 44-71 35-62 (319)
106 PTZ00062 glutaredoxin; Provisi 92.6 0.37 8E-06 45.0 6.8 62 46-108 114-189 (204)
107 TIGR01616 nitro_assoc nitrogen 92.2 0.21 4.6E-06 43.1 4.4 32 46-77 2-33 (126)
108 KOG1752 Glutaredoxin and relat 91.5 1 2.2E-05 37.9 7.5 63 45-108 14-88 (104)
109 COG1393 ArsC Arsenate reductas 91.3 0.31 6.7E-06 41.6 4.4 33 45-77 1-33 (117)
110 PRK10026 arsenate reductase; P 91.1 0.31 6.6E-06 43.1 4.3 32 46-77 3-34 (141)
111 PF01814 Hemerythrin: Hemeryth 88.6 8.2 0.00018 30.9 10.6 60 216-283 4-63 (133)
112 cd03034 ArsC_ArsC Arsenate Red 88.6 0.56 1.2E-05 39.2 3.7 32 47-78 1-32 (112)
113 TIGR00014 arsC arsenate reduct 88.4 0.57 1.2E-05 39.4 3.7 32 47-78 1-32 (114)
114 PF05768 DUF836: Glutaredoxin- 87.6 1.2 2.6E-05 34.9 4.9 49 46-94 1-57 (81)
115 COG0435 ECM4 Predicted glutath 87.3 2.1 4.6E-05 42.3 7.3 28 44-71 49-76 (324)
116 TIGR00412 redox_disulf_2 small 87.1 1.6 3.5E-05 33.7 5.3 51 47-98 3-61 (76)
117 cd01659 TRX_superfamily Thiore 86.4 1.3 2.8E-05 29.3 4.0 48 47-94 1-61 (69)
118 TIGR00411 redox_disulf_1 small 85.8 5.4 0.00012 29.9 7.6 65 46-110 2-80 (82)
119 COG5592 Uncharacterized conser 84.8 6.6 0.00014 35.9 8.6 110 177-304 26-145 (171)
120 PRK10992 iron-sulfur cluster r 83.2 3.9 8.5E-05 38.5 6.9 65 214-284 75-143 (220)
121 PF10799 YliH: Biofilm formati 81.4 1.8 3.8E-05 37.4 3.5 65 235-309 29-93 (127)
122 PRK13276 cell wall biosynthesi 81.2 5.6 0.00012 37.9 7.1 86 214-307 78-167 (224)
123 TIGR03652 FeS_repair_RIC iron- 81.1 3.4 7.5E-05 38.4 5.6 34 251-284 106-139 (216)
124 COG4545 Glutaredoxin-related p 76.2 5.2 0.00011 32.4 4.4 52 47-98 4-77 (85)
125 PF13192 Thioredoxin_3: Thiore 74.9 4.8 0.0001 31.0 3.9 53 47-100 3-63 (76)
126 KOG3028 Translocase of outer m 74.7 8.5 0.00018 38.4 6.5 58 54-111 16-74 (313)
127 COG2846 Regulator of cell morp 74.0 11 0.00023 35.8 6.6 66 217-289 83-148 (221)
128 TIGR02481 hemeryth_dom hemeryt 73.6 31 0.00067 28.6 8.9 88 221-322 16-119 (126)
129 COG5592 Uncharacterized conser 73.4 4.7 0.0001 36.8 4.0 74 180-279 98-171 (171)
130 PF03960 ArsC: ArsC family; I 73.0 3.4 7.4E-05 34.1 2.9 29 50-78 1-29 (110)
131 PHA02125 thioredoxin-like prot 71.2 7.1 0.00015 29.8 4.1 46 46-93 1-53 (75)
132 cd03026 AhpF_NTD_C TRX-GRX-lik 65.8 9 0.0002 30.7 3.8 53 46-98 15-77 (89)
133 PF11287 DUF3088: Protein of u 64.7 15 0.00033 31.6 5.1 62 53-115 22-110 (112)
134 PRK00808 hypothetical protein; 62.3 42 0.00091 29.3 7.7 89 221-322 20-120 (150)
135 KOG3027 Mitochondrial outer me 62.2 20 0.00044 34.3 5.9 87 22-112 4-92 (257)
136 PF12926 MOZART2: Mitotic-spin 58.5 41 0.00088 27.8 6.4 58 267-337 19-76 (88)
137 cd00522 Hemerythrin Hemerythri 52.5 74 0.0016 26.3 7.3 21 258-278 37-57 (113)
138 PRK12302 bssR biofilm formatio 52.1 16 0.00035 31.4 3.1 51 250-309 43-93 (127)
139 PRK15317 alkyl hydroperoxide r 52.0 34 0.00073 35.6 6.2 68 46-113 119-199 (517)
140 PRK11657 dsbG disulfide isomer 49.2 20 0.00042 34.2 3.7 31 45-75 119-153 (251)
141 KOG3154 Uncharacterized conser 47.2 6.5 0.00014 37.7 0.1 18 300-317 119-136 (263)
142 cd03030 GRX_SH3BGR Glutaredoxi 41.9 50 0.0011 26.9 4.5 49 57-106 18-79 (92)
143 COG0278 Glutaredoxin-related p 41.7 1.2E+02 0.0025 25.9 6.7 68 33-109 16-93 (105)
144 PF08300 HCV_NS5a_1a: Hepatiti 40.7 23 0.00051 27.4 2.2 33 11-60 20-52 (62)
145 PF08281 Sigma70_r4_2: Sigma-7 37.7 28 0.0006 24.7 2.1 44 293-337 1-45 (54)
146 PF05781 MRVI1: MRVI1 protein; 37.3 2.6E+02 0.0056 30.2 9.9 103 174-304 189-298 (538)
147 cd03186 GST_C_SspA GST_N famil 37.3 25 0.00053 27.8 2.0 24 204-227 54-77 (107)
148 cd03020 DsbA_DsbC_DsbG DsbA fa 36.7 45 0.00098 29.9 3.8 33 43-75 77-111 (197)
149 cd02947 TRX_family TRX family; 35.8 94 0.002 22.5 4.9 48 45-92 12-69 (93)
150 TIGR02481 hemeryth_dom hemeryt 34.5 2.5E+02 0.0055 23.1 7.8 81 182-281 41-125 (126)
151 PF13410 GST_C_2: Glutathione 34.4 56 0.0012 23.7 3.4 39 182-229 12-50 (69)
152 TIGR03143 AhpF_homolog putativ 33.7 52 0.0011 34.7 4.3 54 46-99 479-542 (555)
153 PRK10877 protein disulfide iso 32.9 40 0.00087 31.7 3.0 25 43-67 107-131 (232)
154 TIGR00058 Hemerythrin hemeryth 32.3 1.9E+02 0.0042 24.1 6.7 19 258-276 39-57 (115)
155 TIGR03140 AhpF alkyl hydropero 32.1 61 0.0013 33.7 4.5 66 46-111 120-198 (515)
156 PF04034 DUF367: Domain of unk 31.4 29 0.00063 30.4 1.6 18 300-317 38-55 (127)
157 cd03184 GST_C_Omega GST_C fami 28.1 1.5E+02 0.0032 24.2 5.3 75 137-228 2-77 (124)
158 KOG2081 Nuclear transport regu 27.3 2.2E+02 0.0047 30.9 7.5 133 181-322 334-481 (559)
159 PF08671 SinI: Anti-repressor 26.5 61 0.0013 21.6 2.1 15 316-330 15-29 (30)
160 COG2042 Uncharacterized conser 24.4 50 0.0011 30.6 1.9 38 278-317 52-104 (179)
161 cd03199 GST_C_GRX2 GST_C famil 23.0 1.5E+02 0.0031 26.0 4.4 62 246-334 58-123 (128)
162 TIGR01321 TrpR trp operon repr 22.3 2.8E+02 0.0061 23.1 5.8 63 261-335 10-72 (94)
163 PF09218 DUF1959: Domain of un 21.7 3.3E+02 0.0071 23.7 6.2 66 274-339 12-99 (117)
164 PF14009 DUF4228: Domain of un 21.4 88 0.0019 26.9 2.8 6 1-6 1-6 (181)
165 cd02972 DsbA_family DsbA famil 21.2 87 0.0019 23.1 2.5 21 47-67 1-21 (98)
166 PF13098 Thioredoxin_2: Thiore 21.0 95 0.0021 24.5 2.8 23 44-66 6-28 (112)
167 COG2517 Predicted RNA-binding 20.9 3.1E+02 0.0068 25.9 6.4 50 183-250 39-88 (219)
No 1
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-27 Score=210.65 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=103.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD--N------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP 113 (344)
..+|||++.|.|||||||||+.|||+||++++| + ..| |+++||+|++||.+|.||. ||++||||+||
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~-AII~YLeEt~P 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESL-AIIEYLEETYP 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHH-HHHHHHHhcCC
Confidence 569999999999999999999999999999998 1 133 9999999999999999995 99999999999
Q ss_pred CCCCCCCCC--CCCCCCccccee-eeeccccchHHHHHHHH-----HHHHHHHHHhc
Q 019250 114 EPSLNNIGD--ADDGDEVSPRVV-RMMRMQHGSLRWHLARM-----VRWAEDLAKRK 162 (344)
Q Consensus 114 ~p~L~P~d~--a~~~~~~~~~i~-~i~~~q~rs~~~~~e~l-----~~w~~~l~~rg 162 (344)
+|||+|.|+ +++.++++..|+ +++++||.++..+++.. ..|++.++++|
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkG 140 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKG 140 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHh
Confidence 999999997 566678888887 69999999999998544 57999998776
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-24 Score=198.48 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=112.7
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---CC-CC-----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCC-
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---NP-IF-----ESEVPTVLRVGSESVSGSRQTLLDFVESKFP- 113 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~p-~~-----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP- 113 (344)
++.++|||+++|||++||||||++|||+||++++| ++ |+ |.+|||||+|++..|+||. +|+|||||+||
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESl-iiveYiDe~w~~ 85 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESL-IIVEYIDETWPS 85 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhH-HHHHHHHhhccC
Confidence 47899999999999999999999999999999887 34 66 7899999999999999995 99999999999
Q ss_pred CCCCCCCCCCCCCCCcccceeeeeccccchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH
Q 019250 114 EPSLNNIGDADDGDEVSPRVVRMMRMQHGSLRWHLARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLL 193 (344)
Q Consensus 114 ~p~L~P~d~a~~~~~~~~~i~~i~~~q~rs~~~~~e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~ 193 (344)
++||+|+|| +.|+|.|-+..++.. .|..-.....+... +.....+.+++ .+.+..|..++.
T Consensus 86 ~~~iLP~DP-------------y~Ra~arfwa~~id~--~~~~~~~~~~~~~~-~e~~~~~~~e~---~e~l~~lE~el~ 146 (231)
T KOG0406|consen 86 GPPILPSDP-------------YERAQARFWAEYIDK--KVFFVGRFVVAAKG-GEEQEAAKEEL---REALKVLEEELG 146 (231)
T ss_pred CCCCCCCCH-------------HHHHHHHHHHHHHHh--HHHHHHHHHHhhcC-chHHHHHHHHH---HHHHHHHHHHHh
Confidence 699999999 899988888888865 33322222211110 01112223333 346777777776
Q ss_pred -HHHhhhhhhhcccccccchhhhhhhhh
Q 019250 194 -EHAQMEERVVFPGLEKDDRGLCKAANE 220 (344)
Q Consensus 194 -~Hs~aEE~v~yP~l~~~~~g~~~~~~~ 220 (344)
. -++|-++..|.+|=++-
T Consensus 147 k~---------k~~fgG~~~G~vDi~~~ 165 (231)
T KOG0406|consen 147 KG---------KDFFGGETIGFVDIAIG 165 (231)
T ss_pred cC---------CCCCCCCCcCHhhhhHH
Confidence 4 78888888888875544
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.86 E-value=2.4e-21 Score=175.50 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=109.4
Q ss_pred CCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---C-CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhC
Q 019250 41 NKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---N-PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 41 ~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~-p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~f 112 (344)
+++.++|+||+++.||||+|||++|++|||+||.+.+| . ++| |.|+||||+++|.+|+||. ||++||+++|
T Consensus 5 ~~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~-AIl~YL~~~~ 83 (211)
T PRK09481 5 ANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESR-IIMEYLDERF 83 (211)
T ss_pred CCCCCeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHH-HHHHHHHHhC
Confidence 34567899999999999999999999999999999888 2 355 9999999999999999996 9999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceeeeeccccchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHH
Q 019250 113 PEPSLNNIGDADDGDEVSPRVVRMMRMQHGSLRWHLARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELL 192 (344)
Q Consensus 113 P~p~L~P~d~a~~~~~~~~~i~~i~~~q~rs~~~~~e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~ 192 (344)
|+++|+|.++ ..+++.+.++.+++. .|........ . .++.. .....+.+.+.+..|...+
T Consensus 84 ~~~~l~p~~~-------------~~ra~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~--~~~~~~~l~~~l~~le~~L 143 (211)
T PRK09481 84 PHPPLMPVYP-------------VARGESRLMMHRIEK--DWYSLMNKIV--N-GSASE--ADAARKQLREELLAIAPVF 143 (211)
T ss_pred CCCCCCCCCH-------------HHHHHHHHHHHHHHH--HHHHHHHHHh--c-CCHHH--HHHHHHHHHHHHHHHHHHh
Confidence 9999999887 444444455544433 3332222110 0 01110 1111122223444444444
Q ss_pred HHHHhhhhhhhcccccccchhhhhhhhhhhhhhh
Q 019250 193 LEHAQMEERVVFPGLEKDDRGLCKAANEEHARDL 226 (344)
Q Consensus 193 ~~Hs~aEE~v~yP~l~~~~~g~~~~~~~eH~~~l 226 (344)
. + -|+|.++.++++|.++.+..+.+
T Consensus 144 ~------~---~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 144 G------E---KPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred c------c---CCcccCCCccHHHHHHHHHHHHH
Confidence 2 2 48999999999999988777433
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.81 E-value=5.3e-19 Score=160.46 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=69.7
Q ss_pred CcEEEeCCC--CChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 45 PSVRLCGSP--NSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 45 ~~m~LY~~~--~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
++|+||+.+ .|||++||+++|.||||+||.+.++. ++| |+|+||||++||.+|+||. ||++||+++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~-aI~~YL~~~ 82 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESS-AIAEYLEER 82 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHH-HHHHHHHHH
Confidence 579999975 79999999999999999999998771 334 9999999999999999996 999999999
Q ss_pred CCCCC---CCCCCC
Q 019250 112 FPEPS---LNNIGD 122 (344)
Q Consensus 112 fP~p~---L~P~d~ 122 (344)
||+++ |+|.++
T Consensus 83 ~~~~~~~~l~p~~~ 96 (214)
T PRK15113 83 FAPPAWERIYPADL 96 (214)
T ss_pred cCCCCccccCCCCH
Confidence 99876 999887
No 5
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.78 E-value=3e-19 Score=145.61 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=67.1
Q ss_pred cceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---CC-CC----CCCCCcEEEeCCeeeeccHHHHH
Q 019250 34 YDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---NP-IF----ESEVPTVLRVGSESVSGSRQTLL 105 (344)
Q Consensus 34 ~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~p-~~----P~GkVPvL~~~d~~l~eS~~aI~ 105 (344)
.++|||+++.++. ...|||||||||+|++|||+|+.+++| +| || |+|+||||+++|.+|+||. +|+
T Consensus 6 ~el~vka~~~~~~-----~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~-~I~ 79 (91)
T cd03061 6 IELFVKASSDGES-----IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNN-KIE 79 (91)
T ss_pred EEEEEEeccCCCC-----CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHH-HHH
Confidence 4688999865543 348999999999999999999999887 35 66 9999999999999999996 999
Q ss_pred HHHHhhCCCCC
Q 019250 106 DFVESKFPEPS 116 (344)
Q Consensus 106 eYLDe~fP~p~ 116 (344)
+|||++|+.+.
T Consensus 80 eYLde~~~~~~ 90 (91)
T cd03061 80 EFLEETLCPPK 90 (91)
T ss_pred HHHHHHccCCC
Confidence 99999998653
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=155.57 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=68.8
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC------CCC----CCCCCcEEEeCCe-eeeccHHHHHHHHHhhCCCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN------PIF----ESEVPTVLRVGSE-SVSGSRQTLLDFVESKFPEP 115 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~------p~~----P~GkVPvL~~~d~-~l~eS~~aI~eYLDe~fP~p 115 (344)
|+||+++.|||++|||++|.+|||+|+.+.++. ++| |.|+||||+++|+ +|+||. ||++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~-AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESG-AILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHH-HHHHHHHhhCCCC
Confidence 689999999999999999999999999998771 333 9999999999987 899996 9999999999998
Q ss_pred CCCCCCC
Q 019250 116 SLNNIGD 122 (344)
Q Consensus 116 ~L~P~d~ 122 (344)
.|+|.|+
T Consensus 80 ~l~p~~~ 86 (211)
T COG0625 80 PLLPADP 86 (211)
T ss_pred CcCCCCc
Confidence 8999998
No 7
>PLN02473 glutathione S-transferase
Probab=99.77 E-value=7.8e-18 Score=151.63 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=68.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC-------CCCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCCC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD-------NPIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFPE 114 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd-------~p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~ 114 (344)
+|+||+++.||+++|||++|.+|||+|+.+.+| ++.+ |.|+||+|++||.+|+||. ||++||+++||+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~-aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESR-AIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehH-HHHHHHHHHcCC
Confidence 689999999999999999999999999999776 1322 9999999999999999996 999999999985
Q ss_pred C--CCCCCCC
Q 019250 115 P--SLNNIGD 122 (344)
Q Consensus 115 p--~L~P~d~ 122 (344)
+ +|+|.++
T Consensus 81 ~~~~l~p~~~ 90 (214)
T PLN02473 81 QGTDLLGKTL 90 (214)
T ss_pred cCCCCCCCCH
Confidence 3 6999886
No 8
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.76 E-value=8.3e-18 Score=157.99 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=103.8
Q ss_pred cceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---C-CCC----CCCCCcEEEeCCeeeeccHHHHH
Q 019250 34 YDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---N-PIF----ESEVPTVLRVGSESVSGSRQTLL 105 (344)
Q Consensus 34 ~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~-p~~----P~GkVPvL~~~d~~l~eS~~aI~ 105 (344)
.++|||++++ + + +...|||+|||||+|.+|||+|+++.+| + ++| |.|+||||+++|.+|+||. +|+
T Consensus 3 ~el~~ka~~~-~--~--~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~-aI~ 76 (236)
T TIGR00862 3 IELFVKAGSD-G--E--SIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVN-KIE 76 (236)
T ss_pred eEEEEecCCC-C--C--cCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHH-HHH
Confidence 4689999643 2 3 2558999999999999999999999988 2 465 9999999999999999996 999
Q ss_pred HHHHhhCCC---CCCCCCCCCCCCCCcccceeeeeccccchHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCchhhh-hh
Q 019250 106 DFVESKFPE---PSLNNIGDADDGDEVSPRVVRMMRMQHGSLRWHLARMVRWAEDLAKR-KGKKAGDPTVGSPKMEF-KK 180 (344)
Q Consensus 106 eYLDe~fP~---p~L~P~d~a~~~~~~~~~i~~i~~~q~rs~~~~~e~l~~w~~~l~~r-g~~~~~~~~~~~~~~el-~e 180 (344)
+|||++||. |++.|.++ ..+. .. .+|...+... .... +. ...++ ++
T Consensus 77 eYL~e~~~~~~~p~l~p~~~-------------~~~~--------~~--~~l~~~~~~~~~~~~---~~---~~~~~~~~ 127 (236)
T TIGR00862 77 EFLEETLCPPRYPKLSPKHP-------------ESNT--------AG--LDIFAKFSAYIKNSN---PE---ANDNLEKG 127 (236)
T ss_pred HHHHHHcCCCCCCCCCCCCH-------------HHHH--------HH--HHHHHHHHHHHHcCC---HH---HHHHHHHH
Confidence 999999985 55666554 1111 00 0111111110 1000 10 11111 12
Q ss_pred HHHHHHHHHHHHHHHH--hh-----hhhh--hcccccccchhhhhhhhhhhhhhhch
Q 019250 181 FASTYSQLLELLLEHA--QM-----EERV--VFPGLEKDDRGLCKAANEEHARDLPI 228 (344)
Q Consensus 181 ~~~~~~~L~~v~~~Hs--~a-----EE~v--~yP~l~~~~~g~~~~~~~eH~~~l~~ 228 (344)
+.+.+..|...+..++ .| ++.- =.|||.++..|++||++.+-++.+..
T Consensus 128 l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~ 184 (236)
T TIGR00862 128 LLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIVKV 184 (236)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHHHH
Confidence 3346666666665321 01 1111 26999999999999999988865554
No 9
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.74 E-value=1.6e-17 Score=148.39 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=67.2
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC----CC---C-CCCCCcEEE-eCCeeeeccHHHHHHHHHhhCCCCCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN----PI---F-ESEVPTVLR-VGSESVSGSRQTLLDFVESKFPEPSL 117 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~----p~---~-P~GkVPvL~-~~d~~l~eS~~aI~eYLDe~fP~p~L 117 (344)
|+||+++.||+++|||++|++|||+|+.+.++. ++ + |.|+||||+ ++|.+|+||. +|++||+++||+++|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~-aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSP-IIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHH-HHHHHHHHhCCCCCC
Confidence 589999999999999999999999999987761 22 3 999999998 5678999996 999999999999899
Q ss_pred CCCCC
Q 019250 118 NNIGD 122 (344)
Q Consensus 118 ~P~d~ 122 (344)
+|.++
T Consensus 80 ~p~~~ 84 (202)
T PRK10357 80 LPRDP 84 (202)
T ss_pred CCCCH
Confidence 99887
No 10
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.69 E-value=1.2e-17 Score=128.84 Aligned_cols=67 Identities=31% Similarity=0.533 Sum_probs=61.2
Q ss_pred EeCCCCChHHHHHHHHHHhCCCCCeEeecCC----CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCCCCC
Q 019250 49 LCGSPNSILTAYVRFALLYKSISPRFIPCDN----PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFPEPS 116 (344)
Q Consensus 49 LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~----p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~p~ 116 (344)
||++..||||+|||++|.+|||+|+.+.++. +++ |.|+||||+++|.+|+||. +|++|||++||+||
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~-~I~~yL~~~~~~~p 75 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSA-AIIEYLEERYPGPP 75 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHH-HHHHHHHHHSTSS-
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHH-HHHHHHHHHcCCCC
Confidence 8999999999999999999999999998872 244 9999999999999999995 99999999999986
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.69 E-value=8e-17 Score=143.22 Aligned_cols=74 Identities=11% Similarity=0.228 Sum_probs=63.2
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC--------CCC----CCCCCcEEEe-CCeeeeccHHHHHHHHHhhCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN--------PIF----ESEVPTVLRV-GSESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~--------p~~----P~GkVPvL~~-~d~~l~eS~~aI~eYLDe~fP 113 (344)
|+||+...| +++||+++|++|||+|+.+.++- ++| |.|+||||++ ||.+|+||. +|++||+++||
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~-aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGV-AIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHH-HHHHHHHHhCc
Confidence 689998755 79999999999999999987761 344 9999999985 667999996 99999999999
Q ss_pred CCCCC-CCCC
Q 019250 114 EPSLN-NIGD 122 (344)
Q Consensus 114 ~p~L~-P~d~ 122 (344)
+++|+ |.++
T Consensus 79 ~~~l~~p~~~ 88 (201)
T PRK10542 79 DRQLLAPVGS 88 (201)
T ss_pred ccccCCCCCc
Confidence 98877 4455
No 12
>PLN02378 glutathione S-transferase DHAR1
Probab=99.68 E-value=2.3e-16 Score=143.73 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=67.3
Q ss_pred cceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---CC-CC----CCCCCcEEEeCCeeeeccHHHHH
Q 019250 34 YDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---NP-IF----ESEVPTVLRVGSESVSGSRQTLL 105 (344)
Q Consensus 34 ~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~p-~~----P~GkVPvL~~~d~~l~eS~~aI~ 105 (344)
.+++||++-.+ .. ....|||++|||++|.+||++|+.+.+| ++ +| |.|+||||++||.+|+||. +|+
T Consensus 3 ~~~~~~~~~~~--~~--~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~-aI~ 77 (213)
T PLN02378 3 LEICVKAAVGA--PD--HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSD-VIV 77 (213)
T ss_pred eehhhhccCCC--CC--CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHH-HHH
Confidence 46789996332 33 3446999999999999999999999888 23 55 9999999999999999996 999
Q ss_pred HHHHhhCCCCCCC
Q 019250 106 DFVESKFPEPSLN 118 (344)
Q Consensus 106 eYLDe~fP~p~L~ 118 (344)
+||+++||+++|.
T Consensus 78 ~YL~~~~~~~~l~ 90 (213)
T PLN02378 78 GILEEKYPDPPLK 90 (213)
T ss_pred HHHHHhCCCCCCC
Confidence 9999999987763
No 13
>PLN02395 glutathione S-transferase
Probab=99.66 E-value=7.3e-16 Score=138.67 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=65.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC-------CCCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCCC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD-------NPIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFPE 114 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd-------~p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~ 114 (344)
.++||+.+. ++++||+++|.+|||+|+.+.++ ++++ |.|+||||+++|.+|+||. +|++||+++||+
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~-aI~~YL~~~~~~ 79 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESR-AIMRYYAEKYRS 79 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHH-HHHHHHHHHcCC
Confidence 479999765 46999999999999999998776 1333 9999999999999999996 999999999985
Q ss_pred --CCCCCCCC
Q 019250 115 --PSLNNIGD 122 (344)
Q Consensus 115 --p~L~P~d~ 122 (344)
++|+|.|+
T Consensus 80 ~~~~l~p~~~ 89 (215)
T PLN02395 80 QGPDLLGKTI 89 (215)
T ss_pred CCcCcCCCCh
Confidence 47999887
No 14
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.65 E-value=1.7e-16 Score=143.66 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=62.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC-------CCCC----CCCCCcEEEe-----CC--eeeeccHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD-------NPIF----ESEVPTVLRV-----GS--ESVSGSRQTLLDF 107 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd-------~p~~----P~GkVPvL~~-----~d--~~l~eS~~aI~eY 107 (344)
||+||+.+ +|+++|||++|.||||+||.+.++ .++| |.|+||||++ || .+|+||. ||++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~-AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESG-AILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHH-HHHHH
Confidence 58999887 899999999999999999999876 1334 9999999997 34 4799996 99999
Q ss_pred HHhhCCCCCCCCCCC
Q 019250 108 VESKFPEPSLNNIGD 122 (344)
Q Consensus 108 LDe~fP~p~L~P~d~ 122 (344)
|+++|| .|.|.++
T Consensus 79 L~~~~~--~l~p~~~ 91 (215)
T PRK13972 79 LAEKTG--LFLSHET 91 (215)
T ss_pred HHHhcC--CCCCCCH
Confidence 999985 5777776
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.65 E-value=6.5e-16 Score=146.05 Aligned_cols=75 Identities=15% Similarity=-0.021 Sum_probs=64.4
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhC------CCCCeEeecC--C-----CCC----CCCCCcEEEeCC----eeeeccHH
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYK------SISPRFIPCD--N-----PIF----ESEVPTVLRVGS----ESVSGSRQ 102 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eK------gI~ye~v~vd--~-----p~~----P~GkVPvL~~~d----~~l~eS~~ 102 (344)
+..|+||+.+ |||++|||++|.|+ |++||.+.++ + ++| |.|+||||+++| .+|+||.
T Consensus 42 ~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~- 119 (264)
T PRK11752 42 KHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG- 119 (264)
T ss_pred CCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH-
Confidence 4579999975 99999999999996 8999998776 1 344 999999999863 5899996
Q ss_pred HHHHHHHhhCCCCCCCCCCC
Q 019250 103 TLLDFVESKFPEPSLNNIGD 122 (344)
Q Consensus 103 aI~eYLDe~fP~p~L~P~d~ 122 (344)
||++||+++|| +|+|.++
T Consensus 120 AIl~YL~~~~~--~L~P~~~ 137 (264)
T PRK11752 120 AILLYLAEKFG--AFLPKDL 137 (264)
T ss_pred HHHHHHHHhcC--CcCCCCH
Confidence 99999999997 5999876
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.64 E-value=2.7e-15 Score=142.89 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=70.5
Q ss_pred cccccCCcceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---CC-CC----CCCCCcEEEeCCeeee
Q 019250 27 STAEIAPYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---NP-IF----ESEVPTVLRVGSESVS 98 (344)
Q Consensus 27 ~~~~i~p~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~p-~~----P~GkVPvL~~~d~~l~ 98 (344)
+.+---|..+.||++. .+.+....|||++|||++|.+|||+|+.+.++ ++ || |.|+||||+++|.+|+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ 124 (265)
T PLN02817 49 AITMSSPLEVCVKASL----TVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVA 124 (265)
T ss_pred ecCCCccHHHHHhccc----CCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEe
Confidence 3344446777788853 33333445999999999999999999998887 23 55 9999999999999999
Q ss_pred ccHHHHHHHHHhhCCCCCCC
Q 019250 99 GSRQTLLDFVESKFPEPSLN 118 (344)
Q Consensus 99 eS~~aI~eYLDe~fP~p~L~ 118 (344)
||. +|++||+++||+++|.
T Consensus 125 ES~-aI~~YL~e~~p~~~L~ 143 (265)
T PLN02817 125 DSD-VITQALEEKYPDPPLA 143 (265)
T ss_pred cHH-HHHHHHHHHCCCCCCC
Confidence 995 9999999999998774
No 17
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.64 E-value=3.8e-16 Score=118.04 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=59.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---C-CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD---N-PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~-p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~f 112 (344)
|+||+.+.|||++|||++|.+|||+|+.+.++ . +++ |.|+||+|+++|..++||. +|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~-aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESR-IIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHH-HHHHHHHhhC
Confidence 68999999999999999999999999999887 1 343 9999999999999999996 9999999986
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.64 E-value=3.2e-15 Score=133.76 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=62.0
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----C-CC-CCCCCcEE-EeCCeeeeccHHHHHHHHHhhCCCCCCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----P-IF-ESEVPTVL-RVGSESVSGSRQTLLDFVESKFPEPSLN 118 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p-~~-P~GkVPvL-~~~d~~l~eS~~aI~eYLDe~fP~p~L~ 118 (344)
|+||++..|||++|||++|.+|||+|+.+.++. + .. |.|+|||| .++|.+|+||. +|++|||++||++.|.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~-aI~~yL~~~~~~~~l~ 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESL-DIVHYIDELDGKPLLT 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHH-HHHHHHHHhCCCccCC
Confidence 689999999999999999999999999998762 1 11 89999999 47788999996 9999999999976553
No 19
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.63 E-value=7.3e-16 Score=119.59 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=58.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeC--CeeeeccHHHHHHHHHhhC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVG--SESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~--d~~l~eS~~aI~eYLDe~f 112 (344)
|++||+.+.|||++|||++|.+|||+|+.+.++. +.+ |.|+||||+++ +.+++||. +|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~-~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESA-DIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHH-HHHHHHHHhC
Confidence 5899999999999999999999999999998763 223 99999999983 57999996 9999999986
No 20
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.63 E-value=6.3e-16 Score=118.16 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=58.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC----CCC----CC-CCCcEEEeCCeeeeccHHHHHHHHHhhC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN----PIF----ES-EVPTVLRVGSESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~----p~~----P~-GkVPvL~~~d~~l~eS~~aI~eYLDe~f 112 (344)
|+||+++.|||++|||++|+++|++|+.+.++. +++ |. |+||+|++||.+++||. +|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~-aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESL-IIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHH-HHHHHHHhhC
Confidence 689999999999999999999999999997762 343 85 99999999999999996 9999999976
No 21
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.62 E-value=5.5e-16 Score=119.92 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=56.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
++||+++.||+++|||++|.+||++|+.+.++. ++| |.|+||+|++||.+|+||. +|++|||
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~-aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPT-QIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHH-HHHHHhC
Confidence 479999999999999999999999999997761 344 9999999999999999996 9999996
No 22
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.62 E-value=1.6e-15 Score=135.76 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=66.8
Q ss_pred EEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCCCC
Q 019250 48 RLCGSPNSILTAYVRFALLYKSISPRFIPCD--N------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFPEP 115 (344)
Q Consensus 48 ~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~p 115 (344)
+||+++.||+++|||++|.++||+|+.+.++ . +++ |+|+||+|+++|.+|+||. +|++||+++||++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~-aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSL-AIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHH-HHHHHHHHhCCCC
Confidence 4899999999999999999999999998666 1 233 9999999999999999996 9999999999998
Q ss_pred CCCCCCC
Q 019250 116 SLNNIGD 122 (344)
Q Consensus 116 ~L~P~d~ 122 (344)
.|+|.++
T Consensus 80 ~l~p~~~ 86 (210)
T TIGR01262 80 PLLPADP 86 (210)
T ss_pred CCCCCCH
Confidence 8999876
No 23
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.61 E-value=9.6e-16 Score=116.25 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC----CC---CCCCCcEEEeC-CeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP----IF---ESEVPTVLRVG-SESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p----~~---P~GkVPvL~~~-d~~l~eS~~aI~eYLDe 110 (344)
|+||+++.|||++|||++|++|||+|+.+.++.. .+ |.|+||||+++ |.++.+|. +|++||||
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~-aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESL-DIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHH-HHHHHHhC
Confidence 6899999999999999999999999999987731 11 99999999986 78999996 99999986
No 24
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.59 E-value=2.1e-15 Score=114.43 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=57.0
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C-----CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD--N-----PIF----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~-----p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
|+||+++.||+++|||++|++|||+|+.+.++ . +++ |.|+||+|+++|.+|+||. ||++||.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~-aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESH-AILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHH-HHHHHHhC
Confidence 58999999999999999999999999998776 1 333 9999999999999999996 99999975
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.59 E-value=3.2e-15 Score=114.22 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=58.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
.|+||+.+.||+|+|||++|+++|++|+.+.++. +++ |.|+||+|+++|..|+||. +|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~-aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESR-AITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHH-HHHHHHhhC
Confidence 3799999999999999999999999999987661 244 9999999999999999996 999999874
No 26
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.58 E-value=5.3e-15 Score=114.02 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred cEEEeCCC-------CChHHHHHHHHHHhCCCCCeEeecCCC-CCCCCCCcEEEeCCeeeeccHHHHHHHHHhhCC
Q 019250 46 SVRLCGSP-------NSILTAYVRFALLYKSISPRFIPCDNP-IFESEVPTVLRVGSESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 46 ~m~LY~~~-------~sP~s~RVRiaL~eKgI~ye~v~vd~p-~~P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP 113 (344)
|++||+++ .|||++||+++|.+||++|+.+.++.. ..|.|+||||+++|.+|.||. +|++||+++|.
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~~g~~l~eS~-~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIELNGEKIADSE-LIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEECCEEEcCHH-HHHHHHHHHcC
Confidence 57899998 689999999999999999999988753 339999999999999999995 99999999873
No 27
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.57 E-value=4.6e-15 Score=115.25 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=59.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C-----CCC----CCCCCcEEEeC---CeeeeccHHHHHHHHHhh
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD--N-----PIF----ESEVPTVLRVG---SESVSGSRQTLLDFVESK 111 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~-----p~~----P~GkVPvL~~~---d~~l~eS~~aI~eYLDe~ 111 (344)
|++||+.+. |+++|||++|.+|||+|+.+.++ + ++| |.|+||+|+++ +.+|+||. +|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~-aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESG-AILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHH-HHHHHHHHH
Confidence 589999985 99999999999999999998776 1 234 99999999997 68999996 999999999
Q ss_pred CCC
Q 019250 112 FPE 114 (344)
Q Consensus 112 fP~ 114 (344)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 863
No 28
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.57 E-value=4.5e-15 Score=113.99 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=58.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~f 112 (344)
++||+++.||++++|+++|++||++|+.+.++. +++ |.|+||+|+++|.+|+||. ||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~-aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESV-AILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHH-HHHHHHHhhC
Confidence 579999999999999999999999999997761 233 9999999999999999996 9999999876
No 29
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.56 E-value=7.5e-15 Score=117.19 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC----CCC----CCCCCcEEEeC-CeeeeccHHHHHHHHH
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN----PIF----ESEVPTVLRVG-SESVSGSRQTLLDFVE 109 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~----p~~----P~GkVPvL~~~-d~~l~eS~~aI~eYLD 109 (344)
.++++||+.+.|||++|||++|.+|||+|+.+.++. +++ |.|+||+|+++ |..|+||. +|++|||
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~-aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESL-IICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHH-HHHHhhC
Confidence 468999999999999999999999999999998872 344 99999999987 78999996 9999997
No 30
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.54 E-value=1.6e-14 Score=111.04 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=58.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC---CC---CCCCCcEEEeC----CeeeeccHHHHHHHHHhhC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP---IF---ESEVPTVLRVG----SESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p---~~---P~GkVPvL~~~----d~~l~eS~~aI~eYLDe~f 112 (344)
.++||+++.|||+++||++|.+|||+|+.+.++.. .+ |.|+||+|+++ +.+|+||. +|++|||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~-~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSS-VIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHH-HHHHHHHHHc
Confidence 37999999999999999999999999999988731 22 99999999976 57899996 9999999864
No 31
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.54 E-value=1.1e-14 Score=110.89 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=54.4
Q ss_pred EEeCCCCChHHHHHHHHHHhCCCCCeEeecC---C-CCC----CCCCCcEEEeC-CeeeeccHHHHHHHH
Q 019250 48 RLCGSPNSILTAYVRFALLYKSISPRFIPCD---N-PIF----ESEVPTVLRVG-SESVSGSRQTLLDFV 108 (344)
Q Consensus 48 ~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~-p~~----P~GkVPvL~~~-d~~l~eS~~aI~eYL 108 (344)
+||+.+.|||++|||++|++||++|+.+.++ + +++ |.|+||||+++ |.+|+||. +|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~-aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESL-DIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHH-HHHHhh
Confidence 7999999999999999999999999999887 2 344 99999999986 78999996 999997
No 32
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.53 E-value=1.1e-14 Score=109.39 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=54.6
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEe-CCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRV-GSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~-~d~~l~eS~~aI~eYLD 109 (344)
|+||+++.|||++|+|++|.+|||+|+.+.++. +++ |.|+||+|++ ++..++||. +|++|||
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~-aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESV-AICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHH-HHHHHhC
Confidence 589999999999999999999999999987751 233 9999999985 667899996 9999997
No 33
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.52 E-value=1.9e-14 Score=108.48 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=56.1
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
|+||+++.||+++|+|++|++|||+|+.+.++- +++ |.|+||+|++++.+++||. ||++|||
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~-aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSL-AIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHH-HHHHHhC
Confidence 589999999999999999999999999987751 233 9999999999999999996 9999996
No 34
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.52 E-value=1e-13 Score=126.16 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=61.1
Q ss_pred EEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----C-CC-CCCCCcEEE-eCCeeeeccHHHHHHHHHhhCCCCCCCC
Q 019250 48 RLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----P-IF-ESEVPTVLR-VGSESVSGSRQTLLDFVESKFPEPSLNN 119 (344)
Q Consensus 48 ~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p-~~-P~GkVPvL~-~~d~~l~eS~~aI~eYLDe~fP~p~L~P 119 (344)
+||+...|||++|||++|.+|||+|+.++++. + .. |.|+||+|+ +|+.+|.||. +|++||+++||.+.+.|
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~-~I~~yL~~~~~~~~~~~ 79 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESL-DIVAYFDKLDGEPLLTG 79 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHH-HHHHHHHHhCCCccCCC
Confidence 58999999999999999999999999987652 1 12 999999998 7788999995 99999999998765433
No 35
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.52 E-value=1.8e-14 Score=110.01 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=55.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
|+||+++.||+++|||++|++||++|+.+.++. +++ |.|+||+|+++|.+|+||. +|++||.
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~-aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESN-AILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHH-HHHHHhC
Confidence 589999999999999999999999999987651 233 9999999999999999996 9999983
No 36
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.51 E-value=2.8e-14 Score=109.62 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=56.8
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeC-CeeeeccHHHHHHHHHhhCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVG-SESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~-d~~l~eS~~aI~eYLDe~fP 113 (344)
|+||+.+.| ++++||++|++|||+|+.+.++. +++ |.|+||||+++ |.+++||. +|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~-aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESA-AILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHH-HHHHHHHHhCc
Confidence 589999865 68999999999999999987761 344 99999999987 67999996 99999999997
No 37
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.50 E-value=3.2e-14 Score=106.99 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=55.9
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C-----CCC----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD--N-----PIF----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~-----p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
|+||+++.||+++|||++|.+||++|+.+.++ . +++ |.|+||+|+++|.+|+||. +|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~-aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESN-AILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHH-HHHHHhC
Confidence 58999999999999999999999999999876 1 243 9999999999999999996 9999983
No 38
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.50 E-value=3.9e-14 Score=107.75 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=57.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP 113 (344)
|+||+++. ++++|||++|.+|||+|+.+.++. +++ |.|+||+|+++|.+|+||. +|++||+++||
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~-aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESA-AIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHH-HHHHHHHHhCc
Confidence 58999876 689999999999999999987761 233 9999999999999999996 99999999986
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.50 E-value=3.2e-14 Score=108.27 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=55.0
Q ss_pred EEEeCCCCChHHHHHHHHHHh--CCCCCeEeecCC----CCC----CCCCCcEEEe-CCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLY--KSISPRFIPCDN----PIF----ESEVPTVLRV-GSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~e--KgI~ye~v~vd~----p~~----P~GkVPvL~~-~d~~l~eS~~aI~eYLD 109 (344)
|+||+.+.|||++|||++|.+ +|++|+.+.++. +++ |.|+||+|++ ++..++||. +|++|||
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~-aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSR-VICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHH-HHHhhhC
Confidence 589999999999999999999 889999998862 343 9999999985 678999996 9999996
No 40
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.48 E-value=6.6e-14 Score=109.80 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC---CCCCCcEEEeC-CeeeeccHHHHHHHHHhhCC
Q 019250 52 SPNSILTAYVRFALLYKSISPRFIPCDN-------PIF---ESEVPTVLRVG-SESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 52 ~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~---P~GkVPvL~~~-d~~l~eS~~aI~eYLDe~fP 113 (344)
...|||++|||++|.+|||+|+.+.++. +++ |.|+||||+++ +.+|+||. +|++||+++||
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~-aI~~yL~~~~p 84 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSF-AIAEYLEEAYP 84 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHH-HHHHHHHHhCc
Confidence 4689999999999999999999987761 122 89999999998 89999996 99999999987
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.47 E-value=1.1e-13 Score=105.20 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=56.3
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
++||+++.|+++++||++|++|||+|+.+.++. +.+ |.|+||+|+++|..|+||. +|++||..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~-aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSN-AILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecH-HHHHHhhC
Confidence 589999999999999999999999999998772 212 9999999999999999996 99999963
No 42
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.47 E-value=1.1e-13 Score=106.23 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=57.2
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC----CCCC----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD----NPIF----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd----~p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
++||+++.|+++++||++|.++||+|+.+.++ .+.+ |+|+||||++||.+++||. +|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~-aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSN-AILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHH-HHHHHHhc
Confidence 68999999999999999999999999999886 2323 9999999999999999996 99999975
No 43
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.46 E-value=5.5e-14 Score=107.63 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHhCCCCCeEeecC-------C-CCC----CCCCCcEEEe-CCeeeeccHHHHHHHHHhh
Q 019250 54 NSILTAYVRFALLYKSISPRFIPCD-------N-PIF----ESEVPTVLRV-GSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 54 ~sP~s~RVRiaL~eKgI~ye~v~vd-------~-p~~----P~GkVPvL~~-~d~~l~eS~~aI~eYLDe~ 111 (344)
+|||++||||+|++|||+|+...++ + ++| |.|+||+|++ ++.++.||. +|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~-~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESL-AILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHH-HHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHH-HHHHHHhcC
Confidence 5999999999999999999987662 2 355 9999999998 578999995 999999973
No 44
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.45 E-value=1e-13 Score=106.65 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=55.5
Q ss_pred EEeCCCCChHHHHHHHHHHhCCCCCeEeecCC------CCC----CCCCCcEEEeC-CeeeeccHHHHHHHHHh
Q 019250 48 RLCGSPNSILTAYVRFALLYKSISPRFIPCDN------PIF----ESEVPTVLRVG-SESVSGSRQTLLDFVES 110 (344)
Q Consensus 48 ~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~------p~~----P~GkVPvL~~~-d~~l~eS~~aI~eYLDe 110 (344)
+||+++.||+++|+|++|++||++|+.+.++. +++ |.|+||||+++ +.+|+||. ||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~-aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESN-AIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHH-HHHHHHhh
Confidence 79999999999999999999999999997762 244 99999999974 78999996 99999976
No 45
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.45 E-value=2.1e-13 Score=103.81 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHhCCCCCeEeecCCCCC-CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 54 NSILTAYVRFALLYKSISPRFIPCDNPIF-ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 54 ~sP~s~RVRiaL~eKgI~ye~v~vd~p~~-P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
.|||++|||++|.+|||+|+.+.++..+. |.|+||+|+++|..+.||. +|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~~g~~l~es~-~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLELNGEKIADSE-KIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEECCEEEcCHH-HHHHHHhhC
Confidence 89999999999999999999999886555 9999999999999999995 999999875
No 46
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.38 E-value=1.3e-12 Score=102.14 Aligned_cols=66 Identities=9% Similarity=0.045 Sum_probs=58.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC--------C-CC-CCCCCcEEEeCCeeeeccHHHHHHHHHhhCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN--------P-IF-ESEVPTVLRVGSESVSGSRQTLLDFVESKFP 113 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~--------p-~~-P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP 113 (344)
.+||+++.++.+++||++|.++|++|+.+.++. + .+ |+|+||+|++||.+|.||. ||++||.++|.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~-AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTR-AILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHH-HHHHHHHHHcC
Confidence 489999999999999999999999999987762 2 22 7999999999999999996 99999999875
No 47
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.4e-12 Score=118.59 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=68.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC-------CCCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhCC-
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD-------NPIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKFP- 113 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd-------~p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP- 113 (344)
.|+||+++.+|.+++|.|++.++|++||.+.+| +|.| |.|+||+|+|+|..+.||+ ||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~-AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESH-AILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHH-HHHHHHHHHcCC
Confidence 589999999999999999999999999999877 2443 9999999999999999997 99999999996
Q ss_pred CCC-CCCCCC
Q 019250 114 EPS-LNNIGD 122 (344)
Q Consensus 114 ~p~-L~P~d~ 122 (344)
... |+|.|+
T Consensus 81 ~~~~l~p~~~ 90 (226)
T KOG0867|consen 81 LGGILLPKDL 90 (226)
T ss_pred CCcccCCcCH
Confidence 334 888886
No 48
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.34 E-value=1.9e-12 Score=99.75 Aligned_cols=57 Identities=16% Similarity=0.013 Sum_probs=51.1
Q ss_pred CCCCChHHHHHHHHHHhCCCCCeEeecCC------CCC----CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 51 GSPNSILTAYVRFALLYKSISPRFIPCDN------PIF----ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 51 ~~~~sP~s~RVRiaL~eKgI~ye~v~vd~------p~~----P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
+...|||++|||++|++|||+|+.+.++. +++ |.|+||+|+++|.+|+||. +|++||
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~-aI~~YL 72 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSL-AICEYL 72 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHH-HHHHHh
Confidence 56789999999999999999999987762 344 9999999999999999996 999998
No 49
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.33 E-value=3e-12 Score=92.60 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=55.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC---C-C-----CCCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN---P-I-----FESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~---p-~-----~P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
++||+.+.||+++++|++|.++||+|+.+.++. . . .|.+++|+|++++.++++|. +|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~-~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESL-AILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHH-HHHHHhC
Confidence 589999999999999999999999999998772 1 1 29999999999999999995 9999985
No 50
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.30 E-value=4.3e-12 Score=100.21 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=56.7
Q ss_pred EEeCCCCChHHHHHHHHHHhCCCCCeEeecC--C------C-CC--------CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 48 RLCGSPNSILTAYVRFALLYKSISPRFIPCD--N------P-IF--------ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 48 ~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd--~------p-~~--------P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
+||.+..++.+++||++|+++||+|+.+.++ . + |. |+|+||||++||.+|+||. ||++||.+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~-AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSN-AILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehH-HHHHHHhh
Confidence 6888889999999999999999999998776 1 2 22 9999999999999999996 99999988
Q ss_pred hC
Q 019250 111 KF 112 (344)
Q Consensus 111 ~f 112 (344)
+|
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 75
No 51
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.22 E-value=1.3e-11 Score=95.88 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=52.4
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-------CCC----CC-CCCcEEEeC-CeeeeccHHHHHHHHHh
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-------PIF----ES-EVPTVLRVG-SESVSGSRQTLLDFVES 110 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-------p~~----P~-GkVPvL~~~-d~~l~eS~~aI~eYLDe 110 (344)
.++||+.+. .++++|++|+++|++|+.+.++- +++ |. |+||+|+++ |.+|+||. ||++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~-AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESN-AILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHH-HHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHH-HHHHHhCC
Confidence 468888776 99999999999999999998772 333 99 999999999 99999996 99999975
No 52
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.21 E-value=3.5e-11 Score=108.82 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=60.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC---C-----------CCCCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN---P-----------IFESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~---p-----------~~P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
.++||+.+.++.+++||++|+++||+|+.+.++. . ..|+|+||+|++||.+|+||. ||++||+++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~-AI~~YLa~~ 82 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQ-AIVRYLSKK 82 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHH-HHHHHHHHH
Confidence 4899999999999999999999999999986641 1 239999999999999999996 999999999
Q ss_pred CCC
Q 019250 112 FPE 114 (344)
Q Consensus 112 fP~ 114 (344)
||.
T Consensus 83 ~~~ 85 (205)
T PTZ00057 83 YKI 85 (205)
T ss_pred cCC
Confidence 973
No 53
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.12 E-value=4.1e-11 Score=114.23 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC-------CCCC----CCCCCcEEEeCCeeeeccHHHHHHHHHhhC
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD-------NPIF----ESEVPTVLRVGSESVSGSRQTLLDFVESKF 112 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd-------~p~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe~f 112 (344)
...+.||+++.|--|||||+|++||||+|+-..|+ .||| |.|.||||++|+.+|+++. -|++|+|.+|
T Consensus 24 ~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~t-qIIdYvErtf 102 (325)
T KOG4420|consen 24 RESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYT-QIIDYVERTF 102 (325)
T ss_pred hhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHH-HHHHHHHHhh
Confidence 34599999999999999999999999999988777 3788 9999999999999999995 9999999999
Q ss_pred CC-CCCCCCC
Q 019250 113 PE-PSLNNIG 121 (344)
Q Consensus 113 P~-p~L~P~d 121 (344)
-+ ..|+|.-
T Consensus 103 ~ger~l~pe~ 112 (325)
T KOG4420|consen 103 TGERVLMPEV 112 (325)
T ss_pred cccccccccc
Confidence 75 5678853
No 54
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.89 E-value=4.6e-09 Score=82.83 Aligned_cols=62 Identities=23% Similarity=0.178 Sum_probs=52.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC-CC-CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP-IF-ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p-~~-P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
-.|+. .++++.|+++.|.+-|++|+.+...+. .. |.|+||+|++|+.+|.||. +|+.||.++
T Consensus 11 ~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~~~~~P~GkVP~L~~dg~vI~eS~-aIl~yL~~~ 74 (74)
T cd03079 11 QILLP--DNASCLAVQTFLKMCNLPFNVRCRANAEFMSPSGKVPFIRVGNQIVSEFG-PIVQFVEAK 74 (74)
T ss_pred eeecC--CCCCHHHHHHHHHHcCCCcEEEecCCccccCCCCcccEEEECCEEEeCHH-HHHHHHhcC
Confidence 45554 678999999999999999999965443 34 9999999999999999995 999999764
No 55
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=98.85 E-value=4.7e-08 Score=79.61 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhhccccc---ccchhhhhhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHH
Q 019250 176 MEFKKFASTYSQLLELLLEHAQMEERVVFPGLE---KDDRGLCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEA 252 (344)
Q Consensus 176 ~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~---~~~~g~~~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~ 252 (344)
.....+++.+..+...+..|...||+++||++. ....+.+.+...+|..-...++.+...+.... .+.+.
T Consensus 31 ~~~~~l~~~~~~l~~~l~~H~~~EE~~l~p~l~~~~~~~~~~~~~~~~eH~~~~~~l~~l~~~~~~~~-------~~~~~ 103 (133)
T PF01814_consen 31 EDLRALRELLDELRRELRHHHAREEEYLFPALERRDPRGDALIAELRREHEEIRALLDELEEALARYS-------GDEED 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhhCc-------cccch
Confidence 455666779999999999999999999999997 22234778888899966666677766666442 56678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhccch
Q 019250 253 LRNLSVRLKSLQKHCKEHFEEEERDLLPLV 282 (344)
Q Consensus 253 ~~~L~~r~k~l~e~i~~H~~eEE~evfP~a 282 (344)
...+...++.+.+.+.+|+..||+.+||++
T Consensus 104 ~~~~~~~~~~l~~~l~~H~~~Ee~~l~P~~ 133 (133)
T PF01814_consen 104 AEELREALRALAEWLRRHIAKEEEVLFPLL 133 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 889999999999999999999999999985
No 56
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.82 E-value=8.6e-09 Score=95.69 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=68.7
Q ss_pred CcceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---CC-CC----CCCCCcEEEeCCeeeeccHHHH
Q 019250 33 PYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCD---NP-IF----ESEVPTVLRVGSESVSGSRQTL 104 (344)
Q Consensus 33 p~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---~p-~~----P~GkVPvL~~~d~~l~eS~~aI 104 (344)
+..+-||++...+ . .-..|||+||+-+.|.+||++|.+..|| +| || |.|++|+|..++..+.+| ..|
T Consensus 3 ~iel~vkA~s~~~--~--~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs-~~I 77 (221)
T KOG1422|consen 3 EIELCVKAGSDGP--D--SLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDS-DKI 77 (221)
T ss_pred ceEEEEEeccCCc--c--cCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccH-HHH
Confidence 4566789875443 2 2348999999999999999999999888 35 76 999999999999999999 599
Q ss_pred HHHHHhhCCCCCCCC
Q 019250 105 LDFVESKFPEPSLNN 119 (344)
Q Consensus 105 ~eYLDe~fP~p~L~P 119 (344)
-++|+|++|.|++--
T Consensus 78 e~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 78 EEFLEEKLPPPKLPT 92 (221)
T ss_pred HHHHHHhcCCCCCcc
Confidence 999999999887543
No 57
>PLN02907 glutamate-tRNA ligase
Probab=98.81 E-value=3.3e-08 Score=106.29 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=61.8
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCCCCCCCCCcEEEe-CCeeeeccHHHHHHHHHhhCCCCCCCCCCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDNPIFESEVPTVLRV-GSESVSGSRQTLLDFVESKFPEPSLNNIGD 122 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p~~P~GkVPvL~~-~d~~l~eS~~aI~eYLDe~fP~p~L~P~d~ 122 (344)
++||+.+.|+ +.++.++|.+.|++|+.+. ..|.|+||||++ ++.+|+||. ||++||+++||++.|+|.++
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~----~~p~GkVPvLv~ddG~~L~ES~-AIl~YLa~~~p~~~L~p~d~ 73 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP----SLKSGSAPTLLFSSGEKLTGTN-VLLRYIARSASLPGFYGQDA 73 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee----cCCCCCCcEEEECCCCEEECHH-HHHHHHHHhCCCcCCCCCCH
Confidence 7899998775 6789999999999999975 248999999995 667999996 99999999999999999886
No 58
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.62 E-value=1.4e-07 Score=73.78 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC----CC----CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP----IF----ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p----~~----P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
...++||+.+.||||+++|-.|.++||+|+.++++.. .+ +..+||++..+|..+.++ ..|.+||
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~-~~l~~~l 78 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGS-DELEAYL 78 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCH-HHHHHHh
Confidence 4679999999999999999999999999999998731 12 778999999999999998 5999998
No 59
>PRK10638 glutaredoxin 3; Provisional
Probab=98.58 E-value=1.1e-07 Score=74.73 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=53.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
.+++|+.+.||||+++|.+|.++||+|+.++++. .++ |.++||++..|+..|.+. +.+..+-
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~-~~~~~~~ 73 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGC-DDLYALD 73 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCH-HHHHHHH
Confidence 4899999999999999999999999999999972 123 999999999998888877 4777654
No 60
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.48 E-value=2.8e-07 Score=73.22 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=48.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C-C---C---CCCCCcEEEeCCeeeecc
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P-I---F---ESEVPTVLRVGSESVSGS 100 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p-~---~---P~GkVPvL~~~d~~l~eS 100 (344)
.++||+.+.||||+++|.+|.+|||+|+.++++. + + + +..+|||++.+|..+.+-
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf 64 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSGF 64 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEecC
Confidence 5899999999999999999999999999999983 2 1 2 889999999998777654
No 61
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.40 E-value=1.2e-06 Score=66.81 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=54.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC-C---C----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP-I---F----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p-~---~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
.++||+.+.|||++++|-+|.++||+|+.++++.. . + ...+||++..|+..+.++ ..|.+||.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~-~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGS-DDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCH-HHHHHHhC
Confidence 57999999999999999999999999999988732 1 1 667899999999888888 59999983
No 62
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.3e-07 Score=81.14 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=101.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----C-CC-CCCCCcEEEeC-CeeeeccHHHHHHHHHhhCCCCCCC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----P-IF-ESEVPTVLRVG-SESVSGSRQTLLDFVESKFPEPSLN 118 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p-~~-P~GkVPvL~~~-d~~l~eS~~aI~eYLDe~fP~p~L~ 118 (344)
|+||-+..||||-|+|++...|||++|....++ | .. -..+||+|+-+ +..+.|| ..|+.|+|+.+..|-|.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ES-lDIV~y~d~~~~~~~lt 79 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPES-LDIVHYVDELDGKPLLT 79 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhh-hHHHHHHHHhcCchhhc
Confidence 689999999999999999999999999874431 3 22 77899999965 4677888 59999999987654333
Q ss_pred CCCCCCCCCCcccceeeeeccccchHHHHHHHH--HHH-----HHHHHHhcCCCCCCCC--CCCchhhhhhHHHHHHHHH
Q 019250 119 NIGDADDGDEVSPRVVRMMRMQHGSLRWHLARM--VRW-----AEDLAKRKGKKAGDPT--VGSPKMEFKKFASTYSQLL 189 (344)
Q Consensus 119 P~d~a~~~~~~~~~i~~i~~~q~rs~~~~~e~l--~~w-----~~~l~~rg~~~~~~~~--~~~~~~el~e~~~~~~~L~ 189 (344)
..++ .++-.|..++...-|...+-|+.++ ..+ .+.+...+.+..++=+ .+...+=++..+..+..|.
T Consensus 80 -~~~~---pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 80 -GKVR---PAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred -cCcC---HHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 3321 1222232222222233333333221 001 1111111111100000 0111233344455677777
Q ss_pred HHHHHHH------hhhhhhhcccccccchhhhhhhhhhhhhhhchHHhHHHH
Q 019250 190 ELLLEHA------QMEERVVFPGLEKDDRGLCKAANEEHARDLPIMNGIKED 235 (344)
Q Consensus 190 ~v~~~Hs------~aEE~v~yP~l~~~~~g~~~~~~~eH~~~l~~~n~i~e~ 235 (344)
.++.-|+ -+||..+||.+ +.- .......|.-.+.+-+...
T Consensus 156 ~Li~~~s~~n~~l~~ddi~vFplL-Rnl-----t~v~gi~wps~v~dy~~~m 201 (215)
T COG2999 156 KLIVGPSAVNGELSEDDILVFPLL-RNL-----TLVAGIQWPSRVADYRDNM 201 (215)
T ss_pred HHhcCcchhccccchhhhhhhHHh-ccc-----eecccCCCcHHHHHHHHHH
Confidence 7766665 67899999998 322 3445666665555554433
No 63
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.33 E-value=1.2e-06 Score=64.64 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C----C----CCCCCCcEEEeCCeee--eccHHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P----I----FESEVPTVLRVGSESV--SGSRQTLLDFV 108 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~----~P~GkVPvL~~~d~~l--~eS~~aI~eYL 108 (344)
+++||+.+.||+|++++.+|.++|++|..++++. + + ++.+.||+|++++..+ +++ ..|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~-~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP-EKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH-HHHHHHh
Confidence 4799999999999999999999999999998873 1 2 3889999999988776 555 4777776
No 64
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.23 E-value=3.7e-06 Score=65.51 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHhCCCCCeEeecCCCCC-CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 53 PNSILTAYVRFALLYKSISPRFIPCDNPIF-ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 53 ~~sP~s~RVRiaL~eKgI~ye~v~vd~p~~-P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
..||||-++-..|.--|++|+.+..++++. |.|++|+|++++..+.+|. .|++||+++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~-~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPE-KIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChH-HHHHHHHHc
Confidence 367999999999999999999997777776 9999999999999999995 999999864
No 65
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=98.22 E-value=9.3e-06 Score=75.37 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccc--cc-----hh
Q 019250 141 HGSLRWHLARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEK--DD-----RG 213 (344)
Q Consensus 141 ~rs~~~~~e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~--~~-----~g 213 (344)
|+.+...+..+..+...+.+..+.. + ..+.+..+.+..+...+..|..-||+++||++.+ .. .+
T Consensus 80 H~~i~~~l~~L~~l~~kv~~~hg~~---~------~~l~~l~~~~~~~~~eL~~H~~kEE~~LFP~l~~~~~g~~~~~~~ 150 (216)
T TIGR03652 80 HEYLREELPELIPLATKVARVHGDH---H------PELIGLAELFRELKAELEQHLMKEEQILFPAIIEYKRGNPAQAIG 150 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC---C------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCcccccc
Confidence 4455555666666666665443222 1 2334445589999999999999999999999963 11 12
Q ss_pred -hhhhhhhhhhhhhchHHhHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccch
Q 019250 214 -LCKAANEEHARDLPIMNGIKEDIKATGV-LDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLV 282 (344)
Q Consensus 214 -~~~~~~~eH~~~l~~~n~i~e~l~~i~~-~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a 282 (344)
-+.....||. .+.+....|+.+.. -..++.. -+.+..+...++.+.+.+.+|+..||.-+||.+
T Consensus 151 ~pi~~m~~EH~----~~~~~l~~L~~l~~~~~~p~~a-c~~~~~~~~~l~~~~~~L~~HI~~En~iLFP~~ 216 (216)
T TIGR03652 151 TPISVMESEHD----EAGDLLKELRELTNDYTPPEDA-CNTWRALYSGLEELEDDLHEHIHLENNILFPRA 216 (216)
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHcCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 5667888999 44444333332221 1111111 233566777889999999999999999999975
No 66
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=98.21 E-value=2.3e-05 Score=73.39 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccch----hhhh
Q 019250 141 HGSLRWHLARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDR----GLCK 216 (344)
Q Consensus 141 ~rs~~~~~e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~----g~~~ 216 (344)
|+.+...+..+..+...+...-|.. + ..+.+..+.+..+...+..|..-||+++||++.+... +-..
T Consensus 84 H~~~r~~lp~L~~l~~kv~~vhg~~---~------~~~~~~~~l~~~~~~el~~H~~kEE~~LFP~l~~~~~~~~~~pi~ 154 (220)
T PRK10992 84 HDRHREQLPELILLATKVERVHGDK---P------DCPRGLAKYLTALHEELSSHMMKEEQILFPMIKQGMGSQAMGPIS 154 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC---c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccccccchHH
Confidence 3344445555566666665442222 1 3344556699999999999999999999999985222 2455
Q ss_pred hhhhhhhhhhchHHhHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhh
Q 019250 217 AANEEHARDLPIMNGIKEDIKATGV-LDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEA 284 (344)
Q Consensus 217 ~~~~eH~~~l~~~n~i~e~l~~i~~-~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~ 284 (344)
....||. .+......|+.+-. ...+... -..+..+-.+++.+.+.+.+|+..|+.-+||++.+
T Consensus 155 vm~~EHd----~~~~~l~~L~~lt~~~~~p~~a-c~~~~~l~~~l~~~~~dL~~HI~~EnniLFP~a~~ 218 (220)
T PRK10992 155 VMESEHD----EAGELLEVIKHLTNNVTPPPEA-CTTWRALYNGINELIDDLMEHIHLENNVLFPRALA 218 (220)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6678998 44444444443321 1222111 12356667788999999999999999999999874
No 67
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.19 E-value=3.3e-06 Score=61.80 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=51.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeCCeeeeccHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVGSESVSGSRQTLLDF 107 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~d~~l~eS~~aI~eY 107 (344)
+++|+.+.||++++++.+|.++|++|+.++++. .++ |..++|++..++..+.++. .|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~-~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYD-DLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHH-HHHHh
Confidence 689999999999999999999999999998873 122 8899999999998888884 77654
No 68
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.17 E-value=3e-06 Score=62.50 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeCCeeeeccH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVGSESVSGSR 101 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~d~~l~eS~ 101 (344)
+++|+.+.||+|++++.+|.++|++|..++++. +++ |.++||+|++++..+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCC
Confidence 689999999999999999999999999998873 122 8899999999987776654
No 69
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.16 E-value=3.3e-06 Score=64.61 Aligned_cols=56 Identities=20% Similarity=0.068 Sum_probs=47.6
Q ss_pred CcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CCC----CCCCCcEEEeCCeeeecc
Q 019250 45 PSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PIF----ESEVPTVLRVGSESVSGS 100 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~~----P~GkVPvL~~~d~~l~eS 100 (344)
+.++||+.+.||+|++++-+|.++||+|+.++++. +.+ |.++||++..++..|-+-
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~ 65 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGL 65 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCH
Confidence 35899999999999999999999999999998873 122 889999999998766543
No 70
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=5.5e-05 Score=70.47 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=61.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C-CC------CCCCCcEEEeCCeeeeccHHHHHHHHHhhCCCCCC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P-IF------ESEVPTVLRVGSESVSGSRQTLLDFVESKFPEPSL 117 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p-~~------P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~p~L 117 (344)
..+|+-+...-++.-+|+.++.-|++||-+.+.. . |. |+|++|||..|+..|.+|. ||++||-.+|. |
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~-AI~RyLArk~g---l 78 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSR-AILRYLARKFG---L 78 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHH-HHHHHHHHHhC---c
Confidence 3577777778889999999999999999987662 2 33 9999999999999999996 99999999997 5
Q ss_pred CCCCC
Q 019250 118 NNIGD 122 (344)
Q Consensus 118 ~P~d~ 122 (344)
.+.++
T Consensus 79 ~Gkt~ 83 (206)
T KOG1695|consen 79 AGKTE 83 (206)
T ss_pred CCCCH
Confidence 55554
No 71
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.06 E-value=5.9e-06 Score=80.22 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=61.6
Q ss_pred cccccccCCcceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC---C---CCCCCCCcEEEeCCeeee
Q 019250 25 KKSTAEIAPYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN---P---IFESEVPTVLRVGSESVS 98 (344)
Q Consensus 25 ~~~~~~i~p~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~---p---~~P~GkVPvL~~~d~~l~ 98 (344)
.+.-||-.+-.+. ++ .-.++||.+..||||-+||..|-..||+|++|.||. . |--+.|||+|..++..+.
T Consensus 73 ~~lhae~~~~~ld-~s---~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~ 148 (370)
T KOG3029|consen 73 QKLHAETKATRLD-GS---PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMV 148 (370)
T ss_pred HHHHHHHHHhhcC-CC---CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceec
Confidence 4445554444441 12 136899999999999999999999999999999983 2 349999999999777899
Q ss_pred ccHHHHHHHH
Q 019250 99 GSRQTLLDFV 108 (344)
Q Consensus 99 eS~~aI~eYL 108 (344)
+|+ +|+.-|
T Consensus 149 dSs-vIIs~l 157 (370)
T KOG3029|consen 149 DSS-VIISLL 157 (370)
T ss_pred hhH-HHHHHH
Confidence 997 777655
No 72
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.05 E-value=1.5e-05 Score=60.45 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=51.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C----CC----CCC-CCcEEEeCCeeeeccHHHHHHHHH
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P----IF----ESE-VPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~----P~G-kVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
++||+.+.||+|++++-+|.++||+|+.+.++. + .+ ... .||++..++..+.+.. .+.+|-+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~-~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCD-DLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChH-HHHHHHh
Confidence 689999999999999999999999999998873 1 12 333 8999999998888874 7777643
No 73
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.03 E-value=7.8e-06 Score=62.54 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C----CC---CCCCCcEEEeCCe
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P----IF---ESEVPTVLRVGSE 95 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~---P~GkVPvL~~~d~ 95 (344)
++||+.+.||++++++-+|.++||+|+.++++. + ++ +...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 589999999999999999999999999999883 2 22 7779999998654
No 74
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.99 E-value=1.7e-05 Score=61.20 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=53.0
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C-C---C----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P-I---F----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p-~---~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
+++|+.+.||+|.+++-+|.++||+|+.++++. + + + ....||++..++..+.+.. .+.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~-~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCD-DLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChH-HHHHHHHc
Confidence 479999999999999999999999999999883 2 2 2 6778999999998888774 77776654
No 75
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.75 E-value=7.1e-05 Score=56.34 Aligned_cols=64 Identities=5% Similarity=0.012 Sum_probs=48.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-----CC-----CCCCCCcEEEe-CCeeeeccH-HHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-----PI-----FESEVPTVLRV-GSESVSGSR-QTLLDFVE 109 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-----p~-----~P~GkVPvL~~-~d~~l~eS~-~aI~eYLD 109 (344)
.++||+...||++++++-.|.+.|++|+.+++++ .+ ++...||+++. ++..+.++. .-|.++|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 3789999999999999999999999999998873 12 27889999975 455655442 23444443
No 76
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.74 E-value=0.00011 Score=57.75 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=56.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHh-----CCCCCeEeecCCC-----CC------CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLY-----KSISPRFIPCDNP-----IF------ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~e-----KgI~ye~v~vd~p-----~~------P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
.+++|+.+.||+|.+++=+|.+ +|++|+.++++.. .+ +.-.||++..+|..+.+. +-|.+|+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~-~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGC-TDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCH-HHHHHHHH
Confidence 5799999999999999999999 9999999988731 12 346899999998888877 59999998
Q ss_pred hhCC
Q 019250 110 SKFP 113 (344)
Q Consensus 110 e~fP 113 (344)
+.|.
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8763
No 77
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00022 Score=56.53 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=49.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C--C-------C-CCCCCcEEEeCCeeeeccHHHHHHH
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P--I-------F-ESEVPTVLRVGSESVSGSRQTLLDF 107 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p--~-------~-P~GkVPvL~~~d~~l~eS~~aI~eY 107 (344)
.+++|+.+.|||+.|++=+|..||++|+.+.++. + . . +.-+||++..|+..+.+.. -+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~-d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCD-DLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcc-cHHHH
Confidence 4789999999999999999999999999998773 1 1 1 7899999999997776542 44444
No 78
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.50 E-value=0.00039 Score=55.32 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCC-----CCCeEeecCC-----CCC------CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKS-----ISPRFIPCDN-----PIF------ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKg-----I~ye~v~vd~-----p~~------P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
+++|+.+.||||.+++-.|.+++ ++|+.++++. ..+ +...||++..++..+.++ +.|.+|+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~-~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGC-TDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCH-HHHHHHHHh
Confidence 68999999999999999999985 5677777762 112 336899999999889888 599999988
Q ss_pred hCC
Q 019250 111 KFP 113 (344)
Q Consensus 111 ~fP 113 (344)
.|.
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 763
No 79
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.47 E-value=0.00014 Score=53.55 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=43.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC-----CC----CCCCCcEEEeCCeee
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP-----IF----ESEVPTVLRVGSESV 97 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p-----~~----P~GkVPvL~~~d~~l 97 (344)
+++|+.+.||++.+++-.|.++|++|+.++++.. .+ ...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 5799999999999999999999999999988831 12 778999999887543
No 80
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.41 E-value=0.00075 Score=55.41 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=51.2
Q ss_pred CcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-CC-------C----CCCCCcEEEeCCeeeeccHHHHHHH
Q 019250 45 PSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-PI-------F----ESEVPTVLRVGSESVSGSRQTLLDF 107 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p~-------~----P~GkVPvL~~~d~~l~eS~~aI~eY 107 (344)
..+++|+.+.||||+|++-+|..+||+|+.+++|. +. + ...+||++..++..|.+.. .+.+.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d-dl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE-NVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH-HHHHH
Confidence 46899999999999999999999999999999882 21 1 6689999999988787763 55553
No 81
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.19 E-value=0.0022 Score=49.10 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=52.6
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCC--------CC----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCDNP--------IF----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p--------~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
+++|+.+.||++++++-+|.+.+++|+.+.++.. .+ ..-.+|++..++..+.+.. .|.++.++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~-~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCD-DLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHH-HHHHHHHc
Confidence 6899999999999999999999999999877721 11 5568999999988888874 88888765
No 82
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=97.14 E-value=0.0038 Score=59.03 Aligned_cols=126 Identities=24% Similarity=0.286 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccchh--------hh
Q 019250 144 LRWHLARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRG--------LC 215 (344)
Q Consensus 144 ~~~~~e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g--------~~ 215 (344)
....+..+..+...+.+.-|.. . .++.+..+.|..+...+..|..=||+++||++.+-..| -+
T Consensus 90 ~r~~lp~l~~l~~kV~~VHg~~---~------p~l~~l~~lf~~l~~eL~~H~~KEE~ilFP~i~~~~~~~~~~~~~~pI 160 (224)
T PRK13276 90 LREEFKNLTPYVTKLSKVHGPN---H------PYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC---C------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccccchhhhhHH
Confidence 3344445555555555442222 1 23445556999999999999999999999999652222 24
Q ss_pred hhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccch
Q 019250 216 KAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLV 282 (344)
Q Consensus 216 ~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a 282 (344)
....+||...-..+++|+++=++. ..+.+.+. -+..|-.+++.|.+.+.+|++=|-.=+||.+
T Consensus 161 ~~m~~EH~~~g~~l~~i~~lTn~y-t~P~~AC~---t~r~ly~~L~~fe~dL~~HIhLENnILFPr~ 223 (224)
T PRK13276 161 DDLVSDHIATGQLLVKMSELTSSY-EPPIEACG---TWRLVYQRLKALEVLTHEHVHLENHVLFKKV 223 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 577779986666666666666633 22222222 3578888999999999999999999999976
No 83
>PHA03050 glutaredoxin; Provisional
Probab=97.04 E-value=0.0033 Score=52.69 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred CcEEEeCCCCChHHHHHHHHHHhCCC---CCeEeecCC--C------CC----CCCCCcEEEeCCeeeeccHHHHHH
Q 019250 45 PSVRLCGSPNSILTAYVRFALLYKSI---SPRFIPCDN--P------IF----ESEVPTVLRVGSESVSGSRQTLLD 106 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~eKgI---~ye~v~vd~--p------~~----P~GkVPvL~~~d~~l~eS~~aI~e 106 (344)
..+++|+.+.||||.|++=.|.++|| +|+.++++. + ++ -..+||++..++..|.+.. .+.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~d-dl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYS-DLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChH-HHHH
Confidence 46999999999999999999999999 898988873 1 12 5668999999988777763 5555
No 84
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.03 E-value=0.0021 Score=52.64 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=48.9
Q ss_pred CcEEEeCC-----CCChHHHHHHHHHHhCCCCCeEeecCC-C----CC----CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 45 PSVRLCGS-----PNSILTAYVRFALLYKSISPRFIPCDN-P----IF----ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 45 ~~m~LY~~-----~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~----P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
..+.+|+. +.||||+|++-.|.++||+|+.++++. + .+ ...+||.+..++..|-+. +.+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~-ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC-DIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh-HHHHHHH
Confidence 45777754 789999999999999999999998862 1 11 566999999998777666 4666544
No 85
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.01 E-value=0.0033 Score=49.30 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHhCCCC---CeEeecCCCCC-CCCCCcEEEe-CCeeeeccHHHHHHHH
Q 019250 54 NSILTAYVRFALLYKSIS---PRFIPCDNPIF-ESEVPTVLRV-GSESVSGSRQTLLDFV 108 (344)
Q Consensus 54 ~sP~s~RVRiaL~eKgI~---ye~v~vd~p~~-P~GkVPvL~~-~d~~l~eS~~aI~eYL 108 (344)
.+|-|-.+--.|...+.+ ++++..++++. |.|++|+|.+ ++..+.+- ..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~-~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGF-RNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECH-HHHHHhh
Confidence 678888888888889998 99999999988 9999999999 77777776 5999998
No 86
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.93 E-value=0.003 Score=50.60 Aligned_cols=63 Identities=17% Similarity=0.042 Sum_probs=49.2
Q ss_pred cEEEeCC-----CCChHHHHHHHHHHhCCCCCeEeecCC-C----CC----CCCCCcEEEeCCeeeeccHHHHHHHHH
Q 019250 46 SVRLCGS-----PNSILTAYVRFALLYKSISPRFIPCDN-P----IF----ESEVPTVLRVGSESVSGSRQTLLDFVE 109 (344)
Q Consensus 46 ~m~LY~~-----~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~----P~GkVPvL~~~d~~l~eS~~aI~eYLD 109 (344)
.+.+|+. +.||||++++-.|..+||+|+.++++. + .+ ...+||++..++..|.+. +.+.++.+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~-~~l~~l~~ 85 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGC-DIVKEMHE 85 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCH-HHHHHHHH
Confidence 4666654 699999999999999999999998873 1 11 566899999988777766 47777543
No 87
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.90 E-value=0.0048 Score=47.12 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=51.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCC--CeEeecCC---C-----CC----CCCCCcEEEeCCeeeeccHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSIS--PRFIPCDN---P-----IF----ESEVPTVLRVGSESVSGSRQTLLDFVES 110 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~--ye~v~vd~---p-----~~----P~GkVPvL~~~d~~l~eS~~aI~eYLDe 110 (344)
+++|+.+.||+|++++=+|.+.|++ |+++.++. . .+ ....||++..++..+.++. .+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~-~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCS-DLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHH-HHHHHHHc
Confidence 4789999999999999999999999 88888772 1 12 5568999999998898884 77776644
No 88
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.53 E-value=0.007 Score=58.63 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=64.1
Q ss_pred CcEEEeCCC-------CChHHHHHHHHHHhCCCCCeEeecCC-CCCCCCCCcEEEeCCeeeeccHHHHHHHHHhhCCCCC
Q 019250 45 PSVRLCGSP-------NSILTAYVRFALLYKSISPRFIPCDN-PIFESEVPTVLRVGSESVSGSRQTLLDFVESKFPEPS 116 (344)
Q Consensus 45 ~~m~LY~~~-------~sP~s~RVRiaL~eKgI~ye~v~vd~-p~~P~GkVPvL~~~d~~l~eS~~aI~eYLDe~fP~p~ 116 (344)
..+-||.++ .||||-+|-+.|...+|+||.+.-.. -+-+.|++|-++.+|..+.+| +.|..+|++.|.-|.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIELNGe~iaDS-~~I~~~L~~hf~~~~ 122 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIELNGEHIADS-DLIEDRLRKHFKIPD 122 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEeCCeecccc-HHHHHHHHHHcCCCC
Confidence 468888765 59999999999999999999987653 244899999999999999999 599999999997666
Q ss_pred -CCCCCC
Q 019250 117 -LNNIGD 122 (344)
Q Consensus 117 -L~P~d~ 122 (344)
|-+.+.
T Consensus 123 ~L~~e~~ 129 (281)
T KOG4244|consen 123 DLSAEQR 129 (281)
T ss_pred CCCHHHH
Confidence 444443
No 89
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.04 E-value=0.0083 Score=50.25 Aligned_cols=33 Identities=15% Similarity=-0.056 Sum_probs=30.5
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
|+++|+.+.||+|++++=.|.++||+|+++++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 478999999999999999999999999998754
No 90
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.01 E-value=0.0087 Score=51.63 Aligned_cols=33 Identities=18% Similarity=-0.069 Sum_probs=30.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
|+++|+.+.||+|++++=.|.++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 479999999999999999999999999998764
No 91
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.88 E-value=0.0088 Score=49.94 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=29.8
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
++||+.+.||+|++++-.|.++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 47999999999999999999999999998764
No 92
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.81 E-value=0.022 Score=58.01 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C---CC-------------CCCCCcEEEeCCeeeeccHHHHHHH-
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P---IF-------------ESEVPTVLRVGSESVSGSRQTLLDF- 107 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p---~~-------------P~GkVPvL~~~d~~l~eS~~aI~eY- 107 (344)
.+++|+.+.||||++++-.|..+||+|+.+++++ + .+ ...+||++..||..|.+-. .+...
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~-~l~~~~ 81 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYD-NLMARA 81 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCch-HHHHHh
Confidence 4799999999999999999999999999999983 2 11 3568999999988777764 54442
Q ss_pred --HHhhCCCCCCC
Q 019250 108 --VESKFPEPSLN 118 (344)
Q Consensus 108 --LDe~fP~p~L~ 118 (344)
|+++..+-+|+
T Consensus 82 g~l~~~~~~~~~~ 94 (410)
T PRK12759 82 GEVIARVKGSSLT 94 (410)
T ss_pred CCHHHHhcCCccc
Confidence 34444554444
No 93
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.72 E-value=0.012 Score=48.12 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=29.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
+++|+.+.||+|++++=.|.++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 47999999999999999999999999999764
No 94
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=95.66 E-value=0.1 Score=48.88 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccchh-----hhhhhhhhhh
Q 019250 149 ARMVRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRG-----LCKAANEEHA 223 (344)
Q Consensus 149 e~l~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g-----~~~~~~~eH~ 223 (344)
..+...+..+.+--|.+ |+. -..+.+ .|..|.+.+..|.+=||+++||-+.+ ..| -+.....||-
T Consensus 93 peLi~latKverVHgd~---p~~---p~gl~~---~L~~l~~eL~~HMmKEEqIlFPmi~~-G~g~~a~~pI~vm~~EHd 162 (221)
T COG2846 93 PELIPLATKVERVHGDK---PSC---PAGLAE---LLEALKEELESHMMKEEQILFPMIKQ-GMGSQAAGPISVMESEHD 162 (221)
T ss_pred HHHHHHHHHHHHHhCCC---CCc---chhHHH---HHHHHHHHHHHHHHHHHHHhhHHHHh-ccCcccCcchHHHHHHHH
Confidence 34445555555444444 322 244444 89999999999999999999999964 322 3556667887
Q ss_pred hhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchh
Q 019250 224 RDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVE 283 (344)
Q Consensus 224 ~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~ 283 (344)
.-=..++.++.+=+++.-=.--+..| .+|-..++.+.+++-+|++=|=.=+||.+.
T Consensus 163 e~g~~l~~lk~lT~n~tpP~~AC~tW----kalY~gl~~~~dDl~~HIHLENnvLFpr~~ 218 (221)
T COG2846 163 EAGELLEVLKHLTNNYTPPEEACGTW----KALYNGLNEFIDDLMEHIHLENNVLFPRVL 218 (221)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhHH----HHHHHHHHHHHHHHHHHHHhhhccccchhc
Confidence 43334444444444331111223445 456678899999999999999999999875
No 95
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.14 E-value=0.025 Score=48.92 Aligned_cols=33 Identities=12% Similarity=-0.140 Sum_probs=30.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
|+++|+.+.|++|++++-.|.++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 578999999999999999999999999998754
No 96
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.06 E-value=0.031 Score=48.41 Aligned_cols=33 Identities=6% Similarity=-0.072 Sum_probs=30.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
|+++|+.+.|+.|++++=.|.++||+|+.+++.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 578999999999999999999999999999764
No 97
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.02 E-value=0.028 Score=47.13 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=29.6
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
++||+.+.||+|++++=.|.++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 47999999999999999999999999998764
No 98
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.57 E-value=0.1 Score=46.27 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=48.0
Q ss_pred EEEeCCC------CChHHHHHHHHHHhCCCCCeEeecCC-C----CC----C----CCCCcEEEeCCeeeeccHHHHHHH
Q 019250 47 VRLCGSP------NSILTAYVRFALLYKSISPRFIPCDN-P----IF----E----SEVPTVLRVGSESVSGSRQTLLDF 107 (344)
Q Consensus 47 m~LY~~~------~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~----P----~GkVPvL~~~d~~l~eS~~aI~eY 107 (344)
++||... .+|++++||-.|..+||+|+.++++. + ++ . ..+||.+..++..|-+. +.+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~-del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGA-EEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecH-HHHHHH
Confidence 5688877 89999999999999999999998862 1 11 2 36899999998878777 466664
No 99
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.066 Score=49.32 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=70.6
Q ss_pred HHhhhhhhhcccccccchh----hhhhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 019250 195 HAQMEERVVFPGLEKDDRG----LCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEH 270 (344)
Q Consensus 195 Hs~aEE~v~yP~l~~~~~g----~~~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H 270 (344)
|---||.++|+++...-++ -.--..-||..-=..++++.+.++.+..-+.+ ....+..-+..+.+++++|
T Consensus 59 HH~KEE~~LF~~m~~~g~~~~~~~i~~m~~EH~~~R~i~r~lee~~~~~kngd~~------~~~~~i~~A~~y~~likrH 132 (189)
T COG3945 59 HHGKEEKLLFNYMEHEGGPFEEGPIYVMTVEHGEGRYIIRDLEEAYERLKNGDED------SKDDVIDYAVAYLNLIKRH 132 (189)
T ss_pred cchHHHHHHHHHHHHhCCCcccCceeeehhhhhhHHHHHHHHHHHHHHHHccccc------hHHHHHHHHHHHHHHHHHH
Confidence 5578999999998544321 11122336664334555666666633222232 3445678888999999999
Q ss_pred hhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhh
Q 019250 271 FEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQ 304 (344)
Q Consensus 271 ~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~ 304 (344)
++-|+..+||+|+.. ||.+ -.+..++|+..-.
T Consensus 133 IdkEdnvlfp~a~~~-~s~e-~~~v~~e~~~~~e 164 (189)
T COG3945 133 IDKEDNVLFPFAEST-LSEE-LNEVNSECFRFDE 164 (189)
T ss_pred HhhhhhHHHHHHHHH-HHHH-HHHHHHHHHHhhh
Confidence 999999999999976 9996 7778888887655
No 100
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.10 E-value=0.085 Score=38.96 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=40.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHhC-----CCCCeEeecCC-CCC----CCCCCcEEEeCCeeee
Q 019250 46 SVRLCGSPNSILTAYVRFALLYK-----SISPRFIPCDN-PIF----ESEVPTVLRVGSESVS 98 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eK-----gI~ye~v~vd~-p~~----P~GkVPvL~~~d~~l~ 98 (344)
.+++|+.+.||++++++-.|.+- ++++..++++. +.+ -...+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEECCEEEE
Confidence 36899999999999999888753 57777777763 222 4446999999887655
No 101
>PRK10824 glutaredoxin-4; Provisional
Probab=94.09 E-value=0.18 Score=43.12 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=44.3
Q ss_pred cEEEeCC-----CCChHHHHHHHHHHhCCCCCeEeecCC-C----CC----CCCCCcEEEeCCeeeeccHHHHHHH
Q 019250 46 SVRLCGS-----PNSILTAYVRFALLYKSISPRFIPCDN-P----IF----ESEVPTVLRVGSESVSGSRQTLLDF 107 (344)
Q Consensus 46 ~m~LY~~-----~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~~----P~GkVPvL~~~d~~l~eS~~aI~eY 107 (344)
.+.+|+- +.||||+|++-.|..+|++|..++++. + .+ -..+||-+-.++.-|-+. +.+.+.
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~-ddl~~l 90 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGC-DIVIEM 90 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcCh-HHHHHH
Confidence 3555554 599999999999999999999987762 1 11 446788887777666665 355554
No 102
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=93.54 E-value=0.096 Score=44.29 Aligned_cols=31 Identities=10% Similarity=-0.044 Sum_probs=29.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeec
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPC 77 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~v 77 (344)
++||+.+.|+-|++++-.|.++||+|+++++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 7899999999999999999999999999864
No 103
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.45 E-value=0.092 Score=43.68 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=29.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
+++|+.+.|+.|++++-.|.++||+|+++++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998754
No 104
>PRK10853 putative reductase; Provisional
Probab=93.09 E-value=0.14 Score=43.69 Aligned_cols=32 Identities=28% Similarity=0.146 Sum_probs=29.9
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeec
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPC 77 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~v 77 (344)
|+++||.+.|.-|++++-.|.++||+|+++++
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 57999999999999999999999999999864
No 105
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.4 Score=46.86 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=26.1
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCC
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSIS 71 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ 71 (344)
.|...||.+..||+++|..|+++.||++
T Consensus 35 kgryhLYvslaCPWAhRtLi~r~LKGL~ 62 (319)
T KOG2903|consen 35 KGRYHLYVSLACPWAHRTLIVRALKGLE 62 (319)
T ss_pred CceEEEEEeccCcHHHHHHHHHHHcCcc
Confidence 3789999999999999999999999984
No 106
>PTZ00062 glutaredoxin; Provisional
Probab=92.56 E-value=0.37 Score=44.96 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=47.5
Q ss_pred cEEEeCC-----CCChHHHHHHHHHHhCCCCCeEeecCC-C----C---C-CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 46 SVRLCGS-----PNSILTAYVRFALLYKSISPRFIPCDN-P----I---F-ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 46 ~m~LY~~-----~~sP~s~RVRiaL~eKgI~ye~v~vd~-p----~---~-P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
.+.||+- +.||||++++-.|.++||+|+..+++. + . + -..+||.+..+|..|-+. +.+.+..
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~-d~l~~l~ 189 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGH-DIIKELY 189 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcCh-HHHHHHH
Confidence 4666644 689999999999999999999988872 1 1 1 445899999998877776 4776644
No 107
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=92.19 E-value=0.21 Score=43.11 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=30.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeec
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPC 77 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~v 77 (344)
.+++||.+.|.-+++.+-.|.++||+|+++++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 47999999999999999999999999999864
No 108
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=1 Score=37.93 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=49.6
Q ss_pred CcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC-C---CC--------CCCCCcEEEeCCeeeeccHHHHHHHH
Q 019250 45 PSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN-P---IF--------ESEVPTVLRVGSESVSGSRQTLLDFV 108 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~-p---~~--------P~GkVPvL~~~d~~l~eS~~aI~eYL 108 (344)
..+.+|+-..|||++|++-.|...|+.+.++.+|. + .+ -..+||.+..++.-|-+. +-|+.+=
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~-~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGA-SDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCH-HHHHHHH
Confidence 46889999999999999999999999999998883 1 11 334999999998766555 4666653
No 109
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.31 Score=41.64 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=30.3
Q ss_pred CcEEEeCCCCChHHHHHHHHHHhCCCCCeEeec
Q 019250 45 PSVRLCGSPNSILTAYVRFALLYKSISPRFIPC 77 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~v 77 (344)
+++++|+.+.|.=|+.++-.|.+.||+|+++..
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 368999999999999999999999999998854
No 110
>PRK10026 arsenate reductase; Provisional
Probab=91.07 E-value=0.31 Score=43.12 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=30.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeec
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPC 77 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~v 77 (344)
++++|+.+.|.-|++++-.|.++|++|+++++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 68999999999999999999999999999865
No 111
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=88.63 E-value=8.2 Score=30.87 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=44.9
Q ss_pred hhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchh
Q 019250 216 KAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVE 283 (344)
Q Consensus 216 ~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~ 283 (344)
+....+|..-...++.+...+... + .. ..+..+...+..|...+..|+..||.-+||.++
T Consensus 4 ~~l~~~H~~~~~~~~~l~~~~~~~-----~-~~--~~~~~l~~~~~~l~~~l~~H~~~EE~~l~p~l~ 63 (133)
T PF01814_consen 4 DELRRDHRALRRLLAELEEALDEL-----P-DD--EDLRALRELLDELRRELRHHHAREEEYLFPALE 63 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----C-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----c-Cc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344567885556666666666644 2 22 247788888999999999999999999999998
No 112
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=88.56 E-value=0.56 Score=39.21 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=29.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
+++|+.+.|+-|++++-.|.++|++|+++++-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998653
No 113
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=88.42 E-value=0.57 Score=39.35 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
+++|+.+.|+-|++++-.|.++|++|+++++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 47999999999999999999999999998654
No 114
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.56 E-value=1.2 Score=34.89 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred cEEEeCCCCChHHHHHHHHHHhC----CCCCeEeecCC-C-CC--CCCCCcEEEeCC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYK----SISPRFIPCDN-P-IF--ESEVPTVLRVGS 94 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eK----gI~ye~v~vd~-p-~~--P~GkVPvL~~~d 94 (344)
.++|||-+.|+.+..++-.|..- ++.++.++|+. + |+ -.-.||||..++
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 37899999999999999999854 34455566664 3 44 455899999887
No 115
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=2.1 Score=42.26 Aligned_cols=28 Identities=11% Similarity=-0.091 Sum_probs=26.2
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCC
Q 019250 44 TPSVRLCGSPNSILTAYVRFALLYKSIS 71 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~eKgI~ 71 (344)
.|...||.+..||++||..|+-+.||++
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE 76 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLE 76 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhccc
Confidence 5689999999999999999999999985
No 116
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=87.06 E-value=1.6 Score=33.66 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=40.2
Q ss_pred EEEeCCCCChHHHHH----HHHHHhCCCCCeEeecCCC----CCCCCCCcEEEeCCeeee
Q 019250 47 VRLCGSPNSILTAYV----RFALLYKSISPRFIPCDNP----IFESEVPTVLRVGSESVS 98 (344)
Q Consensus 47 m~LY~~~~sP~s~RV----RiaL~eKgI~ye~v~vd~p----~~P~GkVPvL~~~d~~l~ 98 (344)
+.+|+ +.||.+..+ .=++.+.|++++++.+|.+ .+-.-.+|++..+|..++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEECCEEEE
Confidence 67888 899999998 6688889999999988842 235667899999775554
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=86.45 E-value=1.3 Score=29.32 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=37.1
Q ss_pred EEEeCCCCChHHHHHHHHHH-----hCCCCCeEeecCC-C-------CCCCCCCcEEEeCC
Q 019250 47 VRLCGSPNSILTAYVRFALL-----YKSISPRFIPCDN-P-------IFESEVPTVLRVGS 94 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~-----eKgI~ye~v~vd~-p-------~~P~GkVPvL~~~d 94 (344)
+.+|....||++++++-.+. .+++.+..+.++. + .++.+.+|+++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 35677889999999999999 6778887777662 1 23888999998654
No 118
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=85.80 E-value=5.4 Score=29.90 Aligned_cols=65 Identities=9% Similarity=0.162 Sum_probs=41.0
Q ss_pred cEEEeCCCCChHHHHHHHHHHh----CCCCCeEeecC--C-C----CCCCCCCcEEEeCCe-eeec--cHHHHHHHHHh
Q 019250 46 SVRLCGSPNSILTAYVRFALLY----KSISPRFIPCD--N-P----IFESEVPTVLRVGSE-SVSG--SRQTLLDFVES 110 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~e----KgI~ye~v~vd--~-p----~~P~GkVPvL~~~d~-~l~e--S~~aI~eYLDe 110 (344)
++++|..+.||+|..+.=.|.. .+..+.+..+| . + .+....+|++..+|. .+.+ +...|.+.|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKK 80 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCEEEEecCCCHHHHHHHHHh
Confidence 4689999999999999888753 34334544444 2 2 225567999998764 3333 23455555543
No 119
>COG5592 Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=6.6 Score=35.87 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccchh---------hhhhhhhhhhhhhchHHhHH-HHHHhhccCCCCC
Q 019250 177 EFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRG---------LCKAANEEHARDLPIMNGIK-EDIKATGVLDCGS 246 (344)
Q Consensus 177 el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g---------~~~~~~~eH~~~l~~~n~i~-e~l~~i~~~~~~s 246 (344)
++.+.-+.++.+..+-..|--.||+++||..-..+.. ..+-...+|. .+|.+. ..|| ..++
T Consensus 26 ~~~e~le~~gf~~k~~k~h~e~Ee~ilF~v~Vd~~~ed~~~fkdt~~~~~i~~DHk----liE~l~tnlik-----~kR~ 96 (171)
T COG5592 26 DLLEILEFEGFNEKLGKDHVELEEKILFPVIVDADMEDLYVFKDTPEVDRIKNDHK----LIETLATNLIK-----WKRP 96 (171)
T ss_pred HHHHHHhhcchHHHHhhhHHHHHHHhhhhhccchHHHHHHhhhccchhhHhHhhHH----HHHHHHHHHHh-----hccc
Confidence 4444334566788888899999999999987544322 1334455666 555553 3344 2222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhh
Q 019250 247 PAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQ 304 (344)
Q Consensus 247 ~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~ 304 (344)
.++ --++-.+...+-.|=..||.-+||..+ . ++.+.|+..+...++...
T Consensus 97 ~k~-------~e~~p~fyK~LtdHn~aEE~~IfPrvk-s-~~~E~~~~~~kl~LeiI~ 145 (171)
T COG5592 97 DKI-------KERVPLFYKTLTDHNLAEEEYIFPRVK-S-LKGEDEQSALKLALEIIE 145 (171)
T ss_pred hHH-------HHHHHHHHHHHHHccccccchhhHHHH-h-hcchhhHHHHHHHHHHHH
Confidence 355 568999999999999999999999999 3 888788888888887765
No 120
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=83.22 E-value=3.9 Score=38.46 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=43.4
Q ss_pred hhhhhhhhhh----hhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhh
Q 019250 214 LCKAANEEHA----RDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEA 284 (344)
Q Consensus 214 ~~~~~~~eH~----~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~ 284 (344)
++|.-+.-|+ +.+|.+..+...+..+ --.+. +.+.++..-+..|...+..|+..||.-+||.+++
T Consensus 75 LidyI~~~~H~~~r~~lp~L~~l~~kv~~v---hg~~~---~~~~~~~~l~~~~~~el~~H~~kEE~~LFP~l~~ 143 (220)
T PRK10992 75 LIDHIIVRYHDRHREQLPELILLATKVERV---HGDKP---DCPRGLAKYLTALHEELSSHMMKEEQILFPMIKQ 143 (220)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 5665544443 4444444444333322 11222 4577888889999999999999999999999995
No 121
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=81.38 E-value=1.8 Score=37.36 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=50.6
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhhhhhhh
Q 019250 235 DIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQGTHSR 309 (344)
Q Consensus 235 ~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~~~~~r 309 (344)
.-||-|+..-+.- -++-+.+||..+..=--.+++|+.+||.+.|-+|..+ ++. ...|+|-|-|.|
T Consensus 29 kAKGYMSVSEsdh-LRdn~FeLc~e~r~~~~~l~~~l~~eE~~aL~~a~~a-~a~--------AaVCLMsGhHDC 93 (127)
T PF10799_consen 29 KAKGYMSVSESDH-LRDNLFELCREMRDKAPRLKLHLDPEEWEALRRAGEA-LAS--------AAVCLMSGHHDC 93 (127)
T ss_pred HHcCccccchhhh-HHHHHHHHHHHHHHhhHhhhhhcCHHHHHHHHHHHHH-HHH--------HHHHHHcCCCCC
Confidence 3444444443333 3678899999999999999999999999999999866 444 678999988877
No 122
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=81.16 E-value=5.6 Score=37.87 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=56.7
Q ss_pred hhhhhh----hhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCH
Q 019250 214 LCKAAN----EEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELST 289 (344)
Q Consensus 214 ~~~~~~----~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~ 289 (344)
++|.-+ .-|.+.+|.+..+...+..|= +...+ .+..|..-+..++..++.|+..||.-+||+++..+-+.
T Consensus 78 Lid~I~~~hH~~~r~~lp~l~~l~~kV~~VH--g~~~p----~l~~l~~lf~~l~~eL~~H~~KEE~ilFP~i~~~~~~~ 151 (224)
T PRK13276 78 LIQYIQSAYHEPLREEFKNLTPYVTKLSKVH--GPNHP----YLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGE 151 (224)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccc
Confidence 555444 455666777777765555442 33322 36788899999999999999999999999998542222
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 019250 290 EQQKRTLAQCVSVMQGTH 307 (344)
Q Consensus 290 ~~Q~~lL~~~~~~M~~~~ 307 (344)
+...+..-+.+|..=|
T Consensus 152 --~~~~~~~pI~~m~~EH 167 (224)
T PRK13276 152 --VVDDINTVIDDLVSDH 167 (224)
T ss_pred --cchhhhhHHHHHHHHH
Confidence 2222455667776433
No 123
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=81.07 E-value=3.4 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhh
Q 019250 251 EALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEA 284 (344)
Q Consensus 251 e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~ 284 (344)
+.+..+..-+..+...+..|+..||.-+||.+++
T Consensus 106 ~~l~~l~~~~~~~~~eL~~H~~kEE~~LFP~l~~ 139 (216)
T TIGR03652 106 PELIGLAELFRELKAELEQHLMKEEQILFPAIIE 139 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4578889999999999999999999999999984
No 124
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=5.2 Score=32.44 Aligned_cols=52 Identities=19% Similarity=0.036 Sum_probs=40.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhCCCCCeEeecC---------------CCCC------CCCCCcEEEeCC-eeee
Q 019250 47 VRLCGSPNSILTAYVRFALLYKSISPRFIPCD---------------NPIF------ESEVPTVLRVGS-ESVS 98 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd---------------~p~~------P~GkVPvL~~~d-~~l~ 98 (344)
-+||++..||-+.-..--|.--+|+||+|.+- .|.| -+=.||+|..+| .+++
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 48999999999999999999999999999764 1344 444579887654 4555
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=74.90 E-value=4.8 Score=30.96 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=37.1
Q ss_pred EEEeCCCCChHHHHHHH----HHHhCCCCCeEeecCCC----CCCCCCCcEEEeCCeeeecc
Q 019250 47 VRLCGSPNSILTAYVRF----ALLYKSISPRFIPCDNP----IFESEVPTVLRVGSESVSGS 100 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRi----aL~eKgI~ye~v~vd~p----~~P~GkVPvL~~~d~~l~eS 100 (344)
+++|+.. ||++.++.- ++.+.|++++++.+... .+-.-.||+|+.+|...+..
T Consensus 3 I~v~~~~-C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVFSPG-CPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEECSS-CTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEEeCCC-CCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 4566654 999996655 66678999988877531 23566799999988766544
No 126
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.70 E-value=8.5 Score=38.40 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHhCCCCCeEeecCCCCC-CCCCCcEEEeCCeeeeccHHHHHHHHHhh
Q 019250 54 NSILTAYVRFALLYKSISPRFIPCDNPIF-ESEVPTVLRVGSESVSGSRQTLLDFVESK 111 (344)
Q Consensus 54 ~sP~s~RVRiaL~eKgI~ye~v~vd~p~~-P~GkVPvL~~~d~~l~eS~~aI~eYLDe~ 111 (344)
.||-|-++.+.+..-+-+.+++..+++|. |.|++|+|+.++++-..+..-|..||+..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCCCCCCCCCCeEEecCCceeccHHHHHHHHHHh
Confidence 58889999999999887777777778999 99999999998744444556999999873
No 127
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=74.01 E-value=11 Score=35.79 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=50.7
Q ss_pred hhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCH
Q 019250 217 AANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELST 289 (344)
Q Consensus 217 ~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~ 289 (344)
.+.+.|.+.||.+=-+-..++.|-.-.++. ...|..-+..|++.+..||..||.=+||+++. |-|.
T Consensus 83 ryH~~hReqlpeLi~latKverVHgd~p~~------p~gl~~~L~~l~~eL~~HMmKEEqIlFPmi~~-G~g~ 148 (221)
T COG2846 83 RYHERHREQLPELIPLATKVERVHGDKPSC------PAGLAELLEALKEELESHMMKEEQILFPMIKQ-GMGS 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHh-ccCc
Confidence 566788888888777777676553333332 45678889999999999999999999999995 6663
No 128
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=73.59 E-value=31 Score=28.62 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=49.9
Q ss_pred hhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhh----ccchhhcCCCHHHHHHHH
Q 019250 221 EHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDL----LPLVEATELSTEQQKRTL 296 (344)
Q Consensus 221 eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~ev----fP~a~~~~ls~~~Q~~lL 296 (344)
+|..-...+|.+.+.+. . +.+. ..+...+..|.+.+..||..||.=+ +|.+.. | .++-+..+
T Consensus 16 qH~~l~~~in~l~~a~~---~-~~~~-------~~~~~~l~~L~~y~~~HF~~EE~~M~~~~yp~~~~-H--~~~H~~~l 81 (126)
T TIGR02481 16 QHKELFELINELYDALS---A-GNGK-------DELKEILDELIDYTENHFADEEELMEEYGYPDLEE-H--KKEHEKFV 81 (126)
T ss_pred HHHHHHHHHHHHHHHHH---c-CCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH-H--HHHHHHHH
Confidence 66655556666666555 1 2221 2446788999999999999999654 454442 1 11222222
Q ss_pred HHHH------------HHhhhhhhhhHHHHhcCCCHHH
Q 019250 297 AQCV------------SVMQGTHSRLFNFFLEGLTPEE 322 (344)
Q Consensus 297 ~~~~------------~~M~~~~~r~lp~~~~~l~~~e 322 (344)
.+-- .+...+..-+-.||+.+..-.+
T Consensus 82 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~Wl~~HI~~~D 119 (126)
T TIGR02481 82 KKIEELQEAVAEGADESLAEELLDFLKDWLVNHILKED 119 (126)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhHHHh
Confidence 2111 1222455667778777765544
No 129
>COG5592 Uncharacterized conserved protein [Function unknown]
Probab=73.40 E-value=4.7 Score=36.84 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 019250 180 KFASTYSQLLELLLEHAQMEERVVFPGLEKDDRGLCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVR 259 (344)
Q Consensus 180 e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g~~~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r 259 (344)
+.+..+.+....+..|.-+||.++||.+.+-.. | -+-..+..+++.|+ ..+. .|
T Consensus 98 k~~e~~p~fyK~LtdHn~aEE~~IfPrvks~~~--------E--~~~~~~kl~LeiI~---~~~~-------------dr 151 (171)
T COG5592 98 KIKERVPLFYKTLTDHNLAEEEYIFPRVKSLKG--------E--DEQSALKLALEIIE---QYGF-------------DR 151 (171)
T ss_pred HHHHHHHHHHHHHHHccccccchhhHHHHhhcc--------h--hhHHHHHHHHHHHH---HhCc-------------hh
Confidence 345589999999999999999999999965442 1 12236667777777 3331 24
Q ss_pred HHHHHHHHHHhhhhHHhhhc
Q 019250 260 LKSLQKHCKEHFEEEERDLL 279 (344)
Q Consensus 260 ~k~l~e~i~~H~~eEE~evf 279 (344)
-..+.....+||--+|..+|
T Consensus 152 y~k~tgI~~~~~~~~e~~~~ 171 (171)
T COG5592 152 YQKLTGISIDFFRYIESTLF 171 (171)
T ss_pred hhhhhcchHHHHHhhccccC
Confidence 44556667777777776554
No 130
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=73.02 E-value=3.4 Score=34.07 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=23.0
Q ss_pred eCCCCChHHHHHHHHHHhCCCCCeEeecC
Q 019250 50 CGSPNSILTAYVRFALLYKSISPRFIPCD 78 (344)
Q Consensus 50 Y~~~~sP~s~RVRiaL~eKgI~ye~v~vd 78 (344)
||.+.|.-|++++-.|.++||+|+++++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999998753
No 131
>PHA02125 thioredoxin-like protein
Probab=71.24 E-value=7.1 Score=29.78 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=34.2
Q ss_pred cEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCC---C----CCCCCCCcEEEeC
Q 019250 46 SVRLCGSPNSILTAYVRFALLYKSISPRFIPCDN---P----IFESEVPTVLRVG 93 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~---p----~~P~GkVPvL~~~ 93 (344)
|+.+|+.+.|+.|+++.-.|. +++++++.+|. + .|--..+|+++.+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDEGVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCCCHHHHHHcCCceeCeEECC
Confidence 478999999999999988885 46777777762 1 2245578999844
No 132
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=65.81 E-value=9 Score=30.71 Aligned_cols=53 Identities=13% Similarity=-0.093 Sum_probs=38.7
Q ss_pred cEEEeCCCCChHHHHHHHHHHhC-----CCCCeEeecCC-C----CCCCCCCcEEEeCCeeee
Q 019250 46 SVRLCGSPNSILTAYVRFALLYK-----SISPRFIPCDN-P----IFESEVPTVLRVGSESVS 98 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~eK-----gI~ye~v~vd~-p----~~P~GkVPvL~~~d~~l~ 98 (344)
.+.+|..+.||++..++-.+.+- +|.++.++++. + .+-.-.||+++.+|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEECCEEEE
Confidence 57899999999999988776542 57777777763 2 235557999998775544
No 133
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=64.69 E-value=15 Score=31.56 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHh-----CCCCCeEeecCCCC------C--CCCCCcEEEeCCee--------------eeccHHHHH
Q 019250 53 PNSILTAYVRFALLY-----KSISPRFIPCDNPI------F--ESEVPTVLRVGSES--------------VSGSRQTLL 105 (344)
Q Consensus 53 ~~sP~s~RVRiaL~e-----KgI~ye~v~vd~p~------~--P~GkVPvL~~~d~~--------------l~eS~~aI~ 105 (344)
.+||.+..+-=+|+- -.++++.|...+|. + -....|||+.++.. |.+. ..|+
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~-~~I~ 100 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDP-RRIL 100 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCH-HHHH
Confidence 468889888877765 35667666655541 1 56778999876433 4555 5999
Q ss_pred HHHHhhCCCC
Q 019250 106 DFVESKFPEP 115 (344)
Q Consensus 106 eYLDe~fP~p 115 (344)
+||-++|.-|
T Consensus 101 ~~La~r~g~p 110 (112)
T PF11287_consen 101 RYLAERHGFP 110 (112)
T ss_pred HHHHHHcCCC
Confidence 9999998643
No 134
>PRK00808 hypothetical protein; Provisional
Probab=62.34 E-value=42 Score=29.30 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=50.5
Q ss_pred hhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhh----ccchhhcCCCH----HHH
Q 019250 221 EHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLSVRLKSLQKHCKEHFEEEERDL----LPLVEATELST----EQQ 292 (344)
Q Consensus 221 eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~ev----fP~a~~~~ls~----~~Q 292 (344)
+|..-...+|.+.+.+. .+.. ..+..-++.|.+.+..||..||.=+ +|.+... -.. -.+
T Consensus 20 qH~~L~~lin~l~~a~~------~~~~------~~i~~~l~~L~~y~~~HF~~EE~lM~~~~Yp~~~~H-~~~H~~fl~~ 86 (150)
T PRK00808 20 QHKRIVDYINHLHDAQD------SPDR------LAVAEVIDELIDYTLSHFAFEESLMEEAGYPFLVPH-KRVHELFIKR 86 (150)
T ss_pred HHHHHHHHHHHHHHHHH------cCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHH
Confidence 66654455666655554 1111 2446678999999999999999543 5554321 110 011
Q ss_pred HHHHHHHH----HHhhhhhhhhHHHHhcCCCHHH
Q 019250 293 KRTLAQCV----SVMQGTHSRLFNFFLEGLTPEE 322 (344)
Q Consensus 293 ~~lL~~~~----~~M~~~~~r~lp~~~~~l~~~e 322 (344)
...+...+ .+...++.-+-.||+.+..-.+
T Consensus 87 l~~l~~~~~~g~~~~~~l~~~L~~WL~~HI~~~D 120 (150)
T PRK00808 87 VEEYRERFQAGEDVADELHGMLSRWLFNHIRNDD 120 (150)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111 2334677788899999876554
No 135
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.17 E-value=20 Score=34.29 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccccccccccCCcceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCCCCCeEeecCCCCC--CCCCCcEEEeCCeeeec
Q 019250 22 FTSKKSTAEIAPYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKSISPRFIPCDNPIF--ESEVPTVLRVGSESVSG 99 (344)
Q Consensus 22 ~~s~~~~~~i~p~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKgI~ye~v~vd~p~~--P~GkVPvL~~~d~~l~e 99 (344)
+.+++..||=-|-|...=-+-....+-|+.... |--|.-.|.--+++|..+.-++.+| |.|+||.|..|..++.|
T Consensus 4 ~~~~~~aae~WPedatL~qp~e~eQiLl~d~as---cLAVqtfLrMcnLPf~v~~~~NaefmSP~G~vPllr~g~~~~ae 80 (257)
T KOG3027|consen 4 SAEEMNAAEPWPEDATLYQPYEAEQILLPDNAS---CLAVQTFLRMCNLPFNVRQRANAEFMSPGGKVPLLRIGKTLFAE 80 (257)
T ss_pred hhhhhhccCCCCccchhcCcccccccccccchh---HHHHHHHHHHcCCCceeeecCCccccCCCCCCceeeecchhhhh
Confidence 345556666665442111111123455555543 3457788899999999887666655 99999999999665665
Q ss_pred cHHHHHHHHHhhC
Q 019250 100 SRQTLLDFVESKF 112 (344)
Q Consensus 100 S~~aI~eYLDe~f 112 (344)
= ..|..+.+.+-
T Consensus 81 f-~pIV~fVeak~ 92 (257)
T KOG3027|consen 81 F-EPIVDFVEAKG 92 (257)
T ss_pred h-hHHHHHHHHhc
Confidence 5 69999998875
No 136
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=58.50 E-value=41 Score=27.83 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhhhhhhhhHHHHhcCCCHHHHHHHHHHHhHHHhhc
Q 019250 267 CKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQGTHSRLFNFFLEGLTPEEAMQYLDLTTYAVIKN 337 (344)
Q Consensus 267 i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~~~~~r~lp~~~~~l~~~e~~~~L~~~~~~~~~~ 337 (344)
=+.-...||.|+|.+++.+|.+- =|+....++-.+--+-.|..+-|+|+.|+.....+
T Consensus 19 rk~~Ls~eE~EL~ELa~~AGv~~-------------dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~~~ 76 (88)
T PF12926_consen 19 RKKVLSAEEVELYELAQLAGVPM-------------DPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSRLA 76 (88)
T ss_pred HHhccCHHHHHHHHHHHHhCCCc-------------ChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccccC
Confidence 34456788999999999887665 46788899999999999999999999999766544
No 137
>cd00522 Hemerythrin Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the muscle tissue of sipunculids as well as in polycheate and oligocheate annelids. In addition to oxygen transport, Mhr proteins are involved in cadmium fixation and host anti-bacterial defense. Hr and Mhr proteins have the same "four alpha helix bundle" motif and active site structure. Hr forms oligomers, the octameric form being most prevalent, while Mhr is monomeric.
Probab=52.46 E-value=74 Score=26.32 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhHHhhh
Q 019250 258 VRLKSLQKHCKEHFEEEERDL 278 (344)
Q Consensus 258 ~r~k~l~e~i~~H~~eEE~ev 278 (344)
.-++.|.+.+..||..||.=+
T Consensus 37 ~~l~~L~~y~~~HF~~EE~~M 57 (113)
T cd00522 37 DNLKELVDYTVKHFKDEEALM 57 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999543
No 138
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=52.08 E-value=16 Score=31.35 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhhhhhhh
Q 019250 250 HEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQGTHSR 309 (344)
Q Consensus 250 ~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~~~~~r 309 (344)
++-+.+||..+..=.-...-|++.||-+.|-.|+.+ |. ....|+|.|-|.|
T Consensus 43 RdN~FeL~re~~~~s~~l~~h~d~eE~~aL~~A~~a-La--------~AaVCLMsGhHDC 93 (127)
T PRK12302 43 RDNFFELNRELHDKSLRLNLHLDQEEWSALRHAEEA-LA--------TAAVCLMSGHHDC 93 (127)
T ss_pred HHHHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHH-HH--------HHHHHHHcCCCCC
Confidence 566778888887777778899999999999998865 43 4788999998877
No 139
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=52.02 E-value=34 Score=35.61 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=46.1
Q ss_pred cEEEeCCCCChHHHHHHHHHHh-----CCCCCeEeecC-CC----CCCCCCCcEEEeCCeeeec---cHHHHHHHHHhhC
Q 019250 46 SVRLCGSPNSILTAYVRFALLY-----KSISPRFIPCD-NP----IFESEVPTVLRVGSESVSG---SRQTLLDFVESKF 112 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~e-----KgI~ye~v~vd-~p----~~P~GkVPvL~~~d~~l~e---S~~aI~eYLDe~f 112 (344)
.+++|-.+.||||.+++-+++. ..|..+.++.. -| .+-...||.+..++..+++ +...|.+++++..
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccc
Confidence 5889999999999998766543 46666666444 23 2366789999988766664 2235666776654
Q ss_pred C
Q 019250 113 P 113 (344)
Q Consensus 113 P 113 (344)
+
T Consensus 199 ~ 199 (517)
T PRK15317 199 A 199 (517)
T ss_pred c
Confidence 4
No 140
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=49.22 E-value=20 Score=34.23 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=22.6
Q ss_pred CcEEEeCCCCChHHHHHHHHHHh---CC-CCCeEe
Q 019250 45 PSVRLCGSPNSILTAYVRFALLY---KS-ISPRFI 75 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~e---Kg-I~ye~v 75 (344)
..+.+|.++.||||+|..=.+.. +| |.+.++
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 35889999999999999776542 33 555444
No 141
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.16 E-value=6.5 Score=37.74 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.5
Q ss_pred HHHhhhhhhhhHHHHhcC
Q 019250 300 VSVMQGTHSRLFNFFLEG 317 (344)
Q Consensus 300 ~~~M~~~~~r~lp~~~~~ 317 (344)
|.-|++.|+|||||||+.
T Consensus 119 F~kl~~~h~RLLP~lVAA 136 (263)
T KOG3154|consen 119 FGKLRGRHERLLPYLVAA 136 (263)
T ss_pred hhhcCCCcccccchhhhc
Confidence 455899999999999985
No 142
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=41.95 E-value=50 Score=26.95 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCCCeEeecC-C----CCC----C----CCCCcEEEeCCeeeeccHHHHHH
Q 019250 57 LTAYVRFALLYKSISPRFIPCD-N----PIF----E----SEVPTVLRVGSESVSGSRQTLLD 106 (344)
Q Consensus 57 ~s~RVRiaL~eKgI~ye~v~vd-~----p~~----P----~GkVPvL~~~d~~l~eS~~aI~e 106 (344)
-+++|+-.|..|||+|+.++++ + .|+ + ...||-+..+|.-+-+. +.+.+
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~-ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDY-EAFFE 79 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCH-HHHHH
Confidence 4678999999999999999887 2 132 3 36889776677655443 34443
No 143
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=1.2e+02 Score=25.93 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=46.5
Q ss_pred CcceeeccCCCCCcEEEeCCCCChHHHHHHHHHHhCC-CCCeEeecC-C-------CCC-CCCCCcEEEeCCeeeeccHH
Q 019250 33 PYDCVVKVNKPTPSVRLCGSPNSILTAYVRFALLYKS-ISPRFIPCD-N-------PIF-ESEVPTVLRVGSESVSGSRQ 102 (344)
Q Consensus 33 p~~~~vk~~~~~~~m~LY~~~~sP~s~RVRiaL~eKg-I~ye~v~vd-~-------p~~-P~GkVPvL~~~d~~l~eS~~ 102 (344)
|+-++.|..| ..|.|-||.|+-=+|.+-| ++|..++|= + +.| ---++|=|-.++.-+-+| +
T Consensus 16 ~VvLFMKGtp--------~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~-D 86 (105)
T COG0278 16 PVVLFMKGTP--------EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGC-D 86 (105)
T ss_pred ceEEEecCCC--------CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccH-H
Confidence 4456777742 4788999999999999999 666666542 1 222 123577777777767777 5
Q ss_pred HHHHHHH
Q 019250 103 TLLDFVE 109 (344)
Q Consensus 103 aI~eYLD 109 (344)
+|.|-.+
T Consensus 87 Iv~Em~q 93 (105)
T COG0278 87 IVREMYQ 93 (105)
T ss_pred HHHHHHH
Confidence 8777554
No 144
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=40.72 E-value=23 Score=27.40 Aligned_cols=33 Identities=24% Similarity=0.126 Sum_probs=21.5
Q ss_pred ccccccchhhhccccccccccCCcceeeccCCCCCcEEEeCCCCChHHHH
Q 019250 11 ITTTTATTAAAFTSKKSTAEIAPYDCVVKVNKPTPSVRLCGSPNSILTAY 60 (344)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~i~p~~~~vk~~~~~~~m~LY~~~~sP~s~R 60 (344)
..|+|||-| +|+. -||. +.|++||...|...|+
T Consensus 20 ~~TrC~CGa----------~ItG---hVkn----G~mri~gpktCsN~w~ 52 (62)
T PF08300_consen 20 MHTRCPCGA----------VITG---HVKN----GSMRIYGPKTCSNYWH 52 (62)
T ss_dssp EEEE-TTS-----------EEEE---EEET----TEEEEE--TTSHHHHH
T ss_pred EEecCCCCC----------EEeE---EEeC----CeEEEecChhhhcccC
Confidence 468888875 3333 4666 7899999999999886
No 145
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=37.73 E-value=28 Score=24.66 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhh-hhhhhhHHHHhcCCCHHHHHHHHHHHhHHHhhc
Q 019250 293 KRTLAQCVSVMQ-GTHSRLFNFFLEGLTPEEAMQYLDLTTYAVIKN 337 (344)
Q Consensus 293 ~~lL~~~~~~M~-~~~~r~lp~~~~~l~~~e~~~~L~~~~~~~~~~ 337 (344)
++.+.+++.-|| ..-+-++-.+++|++-.|+...++ |...++++
T Consensus 1 r~~l~~~l~~L~~~~r~i~~l~~~~g~s~~eIa~~l~-~s~~~v~~ 45 (54)
T PF08281_consen 1 REALQQALAQLPERQREIFLLRYFQGMSYAEIAEILG-ISESTVKR 45 (54)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHHTS---HHHHHHHCT-S-HHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCcCHHHHHHHHC-cCHHHHHH
Confidence 457888999999 666666667999999999988885 44444443
No 146
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=37.34 E-value=2.6e+02 Score=30.20 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=69.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccchh-hhhhhhhhhhhhhc------hHHhHHHHHHhhccCCCCC
Q 019250 174 PKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRG-LCKAANEEHARDLP------IMNGIKEDIKATGVLDCGS 246 (344)
Q Consensus 174 ~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g-~~~~~~~eH~~~l~------~~n~i~e~l~~i~~~~~~s 246 (344)
.++|+.. .|.+|.--|. .+-++ .-++-+++|.|++- .+..++.+|+++..+=..+
T Consensus 189 ~EkEvE~---~F~~lsL~f~---------------~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d 250 (538)
T PF05781_consen 189 SEKEVEA---EFLRLSLGFK---------------CDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWED 250 (538)
T ss_pred cHHHHHH---HHHHHHHHhh---------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 4456544 6777753322 23355 34477778887764 4556677777655553445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhh
Q 019250 247 PAYHEALRNLSVRLKSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQ 304 (344)
Q Consensus 247 ~~~~e~~~~L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~ 304 (344)
...+|.+.+|-..++.|.....+=- -.|+ + +|.=+|..-+.++..||=
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~rvs--------s~AE-~-lGAv~QE~R~SkAvevM~ 298 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCATRVS--------SRAE-M-LGAVHQESRVSKAVEVMI 298 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-H-hcchHHHHHHHHHHHHHH
Confidence 6779999999999999887775533 3444 4 777789999999999985
No 147
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=37.31 E-value=25 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.3
Q ss_pred cccccccchhhhhhhhhhhhhhhc
Q 019250 204 FPGLEKDDRGLCKAANEEHARDLP 227 (344)
Q Consensus 204 yP~l~~~~~g~~~~~~~eH~~~l~ 227 (344)
-|++.++.++++|+++....|..+
T Consensus 54 ~~~l~G~~~t~aDi~~~~~~~~~~ 77 (107)
T cd03186 54 KPYFMSEEFSLVDCALAPLLWRLP 77 (107)
T ss_pred CCcccCCCCcHHHHHHHHHHHHHH
Confidence 599999999999999998886443
No 148
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=36.67 E-value=45 Score=29.92 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCcEEEeCCCCChHHHHHHHHHHh--CCCCCeEe
Q 019250 43 PTPSVRLCGSPNSILTAYVRFALLY--KSISPRFI 75 (344)
Q Consensus 43 ~~~~m~LY~~~~sP~s~RVRiaL~e--KgI~ye~v 75 (344)
....+.+|.++.||||++..=.+.+ +++.+.++
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEE
Confidence 3457899999999999999888874 44444444
No 149
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=35.85 E-value=94 Score=22.47 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=34.9
Q ss_pred CcEEEeCCCCChHHHHHHHHHHh-----CCCCCeEeecCC-C----CCCCCCCcEEEe
Q 019250 45 PSVRLCGSPNSILTAYVRFALLY-----KSISPRFIPCDN-P----IFESEVPTVLRV 92 (344)
Q Consensus 45 ~~m~LY~~~~sP~s~RVRiaL~e-----KgI~ye~v~vd~-p----~~P~GkVPvL~~ 92 (344)
..+..|+.+.|+.|+.+.-.+.+ +++.+-.++.+. + .+....+|+++.
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLF 69 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEE
Confidence 45777888899999999988887 777776666663 2 235556888654
No 150
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=34.47 E-value=2.5e+02 Score=23.07 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh----cccccccchhhhhhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhHHHHHHHH
Q 019250 182 ASTYSQLLELLLEHAQMEERVV----FPGLEKDDRGLCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYHEALRNLS 257 (344)
Q Consensus 182 ~~~~~~L~~v~~~Hs~aEE~v~----yP~l~~~~~g~~~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~e~~~~L~ 257 (344)
.+.+..|..-...|=.-||+.+ ||.+. +=.++|..=+-.++.++..+. . + .+... . .
T Consensus 41 ~~~l~~L~~y~~~HF~~EE~~M~~~~yp~~~--------~H~~~H~~~l~~l~~l~~~~~---~-~-~~~~~---~---~ 101 (126)
T TIGR02481 41 KEILDELIDYTENHFADEEELMEEYGYPDLE--------EHKKEHEKFVKKIEELQEAVA---E-G-ADESL---A---E 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHHHHHHHHHHH---c-C-CchhH---H---H
Confidence 4489999999999999999987 66553 335688865555666655554 2 1 11211 1 2
Q ss_pred HHHHHHHHHHHHhhhhHHhhhccc
Q 019250 258 VRLKSLQKHCKEHFEEEERDLLPL 281 (344)
Q Consensus 258 ~r~k~l~e~i~~H~~eEE~evfP~ 281 (344)
.-.+.|.+-+..|+..+-+.+.+.
T Consensus 102 ~~~~~l~~Wl~~HI~~~D~~~~~~ 125 (126)
T TIGR02481 102 ELLDFLKDWLVNHILKEDKKYAPY 125 (126)
T ss_pred HHHHHHHHHHHHHhHHHhHHHHhh
Confidence 234567889999999888776543
No 151
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=34.44 E-value=56 Score=23.70 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhhhhhhhchH
Q 019250 182 ASTYSQLLELLLEHAQMEERVVFPGLEKDDRGLCKAANEEHARDLPIM 229 (344)
Q Consensus 182 ~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g~~~~~~~eH~~~l~~~ 229 (344)
.+.+..|...+.. .|+|.++.++.+|+++..+.+.+..+
T Consensus 12 ~~~l~~le~~L~~---------~~fl~G~~~s~aD~~l~~~l~~~~~~ 50 (69)
T PF13410_consen 12 EAALDALEDHLAD---------GPFLFGDRPSLADIALAPFLWRLRFV 50 (69)
T ss_dssp HHHHHHHHHHHTT---------SSBTTBSS--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh---------CCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3477888888887 78999999999999999998755444
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=33.73 E-value=52 Score=34.70 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=39.5
Q ss_pred cEEEeCCCCChHHHHHHHHH----HhC-CCCCeEeecCC-C----CCCCCCCcEEEeCCeeeec
Q 019250 46 SVRLCGSPNSILTAYVRFAL----LYK-SISPRFIPCDN-P----IFESEVPTVLRVGSESVSG 99 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL----~eK-gI~ye~v~vd~-p----~~P~GkVPvL~~~d~~l~e 99 (344)
.+++|-.+.||||.++.-++ .+. +|.++.+.+.. | .|..-.||.++.++..++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEECCEEEEe
Confidence 47888888999998876543 334 79999887763 2 3367789999988765544
No 153
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=32.91 E-value=40 Score=31.73 Aligned_cols=25 Identities=0% Similarity=-0.169 Sum_probs=19.9
Q ss_pred CCCcEEEeCCCCChHHHHHHHHHHh
Q 019250 43 PTPSVRLCGSPNSILTAYVRFALLY 67 (344)
Q Consensus 43 ~~~~m~LY~~~~sP~s~RVRiaL~e 67 (344)
....+.+|+++.||||+|..=-|.+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHH
Confidence 4446899999999999998766554
No 154
>TIGR00058 Hemerythrin hemerythrin family non-heme iron proteins. This family includes oxygen carrier proteins of various oligomeric states from the vascular fluid (hemerythrin) and muscle (myohemerythrin) of some marine invertebrates. Each unit binds 2 non-heme Fe using 5 H, one E and one D. One member of this family,from the sandworm Nereis diversicolor, is an unusual (non-metallothionein) cadmium-binding protein. Homologous proteins, excluded from this narrowly defined family, are found in archaea and bacteria (see pfam01814).
Probab=32.27 E-value=1.9e+02 Score=24.08 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhhHHh
Q 019250 258 VRLKSLQKHCKEHFEEEER 276 (344)
Q Consensus 258 ~r~k~l~e~i~~H~~eEE~ 276 (344)
.-++.|.+.+..||..||.
T Consensus 39 ~~l~~L~~y~~~HF~~EE~ 57 (115)
T TIGR00058 39 TALKELIDVTVLHFLDEEA 57 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999994
No 155
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.14 E-value=61 Score=33.73 Aligned_cols=66 Identities=18% Similarity=0.060 Sum_probs=43.6
Q ss_pred cEEEeCCCCChHHHHHHHHHHh-----CCCCCeEeecC-CC----CCCCCCCcEEEeCCeeeeccH---HHHHHHHHhh
Q 019250 46 SVRLCGSPNSILTAYVRFALLY-----KSISPRFIPCD-NP----IFESEVPTVLRVGSESVSGSR---QTLLDFVESK 111 (344)
Q Consensus 46 ~m~LY~~~~sP~s~RVRiaL~e-----KgI~ye~v~vd-~p----~~P~GkVPvL~~~d~~l~eS~---~aI~eYLDe~ 111 (344)
.+++|-.+.||||.+++-+++. -+|..+.++.. -| .+-...||.+..++..+++.. ..+.+.+.+.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 5889999999999998766654 35665555433 12 236678999998876666532 2455556554
No 156
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.39 E-value=29 Score=30.45 Aligned_cols=18 Identities=11% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHhhhhhhhhHHHHhcC
Q 019250 300 VSVMQGTHSRLFNFFLEG 317 (344)
Q Consensus 300 ~~~M~~~~~r~lp~~~~~ 317 (344)
|.-|.+.|.|+||||+++
T Consensus 38 f~k~~~~~~R~LP~LvAa 55 (127)
T PF04034_consen 38 FKKLRSRNHRLLPYLVAA 55 (127)
T ss_pred HHhcCCCCCccCchhhcc
Confidence 777888999999999986
No 157
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=28.12 E-value=1.5e+02 Score=24.22 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=42.4
Q ss_pred eccccchHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhh
Q 019250 137 MRMQHGSLRWHLARM-VRWAEDLAKRKGKKAGDPTVGSPKMEFKKFASTYSQLLELLLEHAQMEERVVFPGLEKDDRGLC 215 (344)
Q Consensus 137 ~~~q~rs~~~~~e~l-~~w~~~l~~rg~~~~~~~~~~~~~~el~e~~~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g~~ 215 (344)
+|+++|.+...+.++ ..|.+.+.. + ........++ .+.+..|...+... . -|+|.++.++++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~---~~~l~~le~~L~~~----~---~~yl~G~~~t~a 64 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGA---P----SDREEKKAEL---RSALENLEEELTKR----G---TPFFGGDSPGMV 64 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhc---c----ccchhhHHHH---HHHHHHHHHHHHhc----C---CCCcCCCCccHH
Confidence 466777777777654 234433331 1 1122223333 33566665555420 0 389999999999
Q ss_pred hhhhhhhhhhhch
Q 019250 216 KAANEEHARDLPI 228 (344)
Q Consensus 216 ~~~~~eH~~~l~~ 228 (344)
|.++.+....+..
T Consensus 65 Di~~~~~~~~~~~ 77 (124)
T cd03184 65 DYMIWPWFERLEA 77 (124)
T ss_pred HHHhhHHHHHHHH
Confidence 9998887754433
No 158
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.33 E-value=2.2e+02 Score=30.88 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccc-ccchhhhhhhhhhhhhhh----chHHhHHHHHHhhccCCCCChhhHHHHHH
Q 019250 181 FASTYSQLLELLLEHAQMEERVVFPGLE-KDDRGLCKAANEEHARDL----PIMNGIKEDIKATGVLDCGSPAYHEALRN 255 (344)
Q Consensus 181 ~~~~~~~L~~v~~~Hs~aEE~v~yP~l~-~~~~g~~~~~~~eH~~~l----~~~n~i~e~l~~i~~~~~~s~~~~e~~~~ 255 (344)
|+--+.+|...+..|.+++. --+-..+ .++++.-+-...|-..|. -..+.+..... .+..+.+.|.+
T Consensus 334 frpy~~rLvs~l~~h~qlp~-~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~---~l~e~~~~We~---- 405 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPP-DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYI---RLKENNASWEE---- 405 (559)
T ss_pred hHHHHHHHHHHHHHHccCCC-ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---HHccCCCchHH----
Confidence 45578899999999999877 1111111 233443232222222222 12222222222 22335666754
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHh----------hhhhhhhHHHHhcCCCHHH
Q 019250 256 LSVRLKSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVM----------QGTHSRLFNFFLEGLTPEE 322 (344)
Q Consensus 256 L~~r~k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M----------~~~~~r~lp~~~~~l~~~e 322 (344)
..-+=.++..+-.-+..+|.+++|..=+.=+...+|..+.|-+..+. |.+++-|+-|...|+..++
T Consensus 406 -~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~ 481 (559)
T KOG2081|consen 406 -VEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR 481 (559)
T ss_pred -HHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc
Confidence 33444577888899999999999998776677778888888776543 5788899999999998876
No 159
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.52 E-value=61 Score=21.59 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=9.6
Q ss_pred cCCCHHHHHHHHHHH
Q 019250 316 EGLTPEEAMQYLDLT 330 (344)
Q Consensus 316 ~~l~~~e~~~~L~~~ 330 (344)
.||+.+|.++||..+
T Consensus 15 ~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 15 SGLSKEEIREFLEFN 29 (30)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 577888888888754
No 160
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=50 Score=30.55 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=26.2
Q ss_pred hccchhhcCCCHHHHHHH---------------HHHHHHHhhhhhhhhHHHHhcC
Q 019250 278 LLPLVEATELSTEQQKRT---------------LAQCVSVMQGTHSRLFNFFLEG 317 (344)
Q Consensus 278 vfP~a~~~~ls~~~Q~~l---------------L~~~~~~M~~~~~r~lp~~~~~ 317 (344)
+=|.++++ +|+ +.++. +.+.|.-.++-+.|.|||||++
T Consensus 52 L~P~ae~~-lSp-~D~~iver~Gi~vvdcSW~~~~~~f~~l~~~~~R~LP~LvAa 104 (179)
T COG2042 52 LTPFAEKA-LSP-ADRDIVERFGITVVDCSWNRVERVFKKLRGREHRRLPFLVAA 104 (179)
T ss_pred ECCCcccc-cCh-hhHHHHHhcCeEEEEccHHHHHHHHHhcCccccccccHhhhc
Confidence 34677766 777 44443 3355666676699999999986
No 161
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=22.97 E-value=1.5e+02 Score=26.03 Aligned_cols=62 Identities=24% Similarity=0.458 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHHHHHHH---HHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhhhhhhhhHHHHhcCCC-HH
Q 019250 246 SPAYHEALRNLSVRLKSLQ---KHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQGTHSRLFNFFLEGLT-PE 321 (344)
Q Consensus 246 s~~~~e~~~~L~~r~k~l~---e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~~~~~r~lp~~~~~l~-~~ 321 (344)
++.|...+..+...++.+. +.+.+.+.-++--+||.+| +|+- |.|+. |.
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~~~~n~~ls~DDi~lFp~LR--~Lt~-------------------------vkgi~~P~ 110 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSSEAVNGQLSTDDIILFPILR--NLTL-------------------------VKGLVFPP 110 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccccCCcCCHHHHHHHHHHh--hhhh-------------------------hcCCCCCH
Confidence 3455555555555555555 4445567778888899988 3554 44443 67
Q ss_pred HHHHHHHHHhHHH
Q 019250 322 EAMQYLDLTTYAV 334 (344)
Q Consensus 322 e~~~~L~~~~~~~ 334 (344)
.++.|+++|...+
T Consensus 111 ~V~~Y~~~~s~~t 123 (128)
T cd03199 111 KVKAYLERMSALT 123 (128)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888886654
No 162
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=22.32 E-value=2.8e+02 Score=23.14 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhHHhhhccchhhcCCCHHHHHHHHHHHHHHhhhhhhhhHHHHhcCCCHHHHHHHHHHHhHHHh
Q 019250 261 KSLQKHCKEHFEEEERDLLPLVEATELSTEQQKRTLAQCVSVMQGTHSRLFNFFLEGLTPEEAMQYLDLTTYAVI 335 (344)
Q Consensus 261 k~l~e~i~~H~~eEE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~~~~~r~lp~~~~~l~~~e~~~~L~~~~~~~~ 335 (344)
..|.+.+..+.+++ ++.+.+... |++ .+++.+..-+.+...++. .+++..|..+-|+ +..++|
T Consensus 10 ~~~~~ll~~~~~~~--~l~~~l~~l-LTp-~E~~~l~~R~~i~~~Ll~-------~~~tQrEIa~~lG-iS~atI 72 (94)
T TIGR01321 10 EAFLKLLKKADSED--DMQLLLELI-LTR-SEREDLGDRIRIVNELLN-------GNMSQREIASKLG-VSIATI 72 (94)
T ss_pred HHHHHHHHHcCCHH--HHHHHHHHh-CCH-HHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHhC-CChhhh
Confidence 44556666666555 466777755 888 888888888888776655 6789888888774 444444
No 163
>PF09218 DUF1959: Domain of unknown function (DUF1959); InterPro: IPR012056 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. This entry represents proteins that are predicted to be the hydrophilic EhaM subunits of Eha-type energy-converting [NiFe] hydrogenase complexes.; PDB: 1NXH_B.
Probab=21.65 E-value=3.3e+02 Score=23.72 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHhhhccchhhcCCCHHHHHHHHHHHHHHhh--hhhhhh-----------------HHHHh---cCCCHHHHHHHHHHHh
Q 019250 274 EERDLLPLVEATELSTEQQKRTLAQCVSVMQ--GTHSRL-----------------FNFFL---EGLTPEEAMQYLDLTT 331 (344)
Q Consensus 274 EE~evfP~a~~~~ls~~~Q~~lL~~~~~~M~--~~~~r~-----------------lp~~~---~~l~~~e~~~~L~~~~ 331 (344)
.|.-+.|+.++.|++.++=.+.|-..++++- .+|.|+ |+||+ .-++.+||-.+.+.+.
T Consensus 12 ~ed~v~plSk~lgi~~ee~~~ili~~~DmssLe~lhar~E~Ak~~cl~~~vd~dL~L~wl~d~~~lis~edAd~ir~kv~ 91 (117)
T PF09218_consen 12 MEDVVIPLSKELGISIEEFIDILIEKLDMSSLENLHARYEQAKMGCLGRKVDIDLGLCWLSDVMGLISEEDADLIRKKVV 91 (117)
T ss_dssp HHHTTTTTTTTGGGTHHHHHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHTTTS--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHhcChHHHHhccHHHHHHhhhhhhhhhhHHhhHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4567899999999999887888887777766 666654 78875 5678999999988887
Q ss_pred HHHhhccC
Q 019250 332 YAVIKNNL 339 (344)
Q Consensus 332 ~~~~~~~~ 339 (344)
--+|.++-
T Consensus 92 ~~~i~~~~ 99 (117)
T PF09218_consen 92 EDTIIHGK 99 (117)
T ss_dssp HH-HHTT-
T ss_pred HHHHHcCC
Confidence 77676654
No 164
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=21.37 E-value=88 Score=26.90 Aligned_cols=6 Identities=67% Similarity=1.542 Sum_probs=5.8
Q ss_pred CCCccc
Q 019250 1 MGNCFT 6 (344)
Q Consensus 1 ~~~~~~ 6 (344)
||||.+
T Consensus 1 MGn~~~ 6 (181)
T PF14009_consen 1 MGNCVS 6 (181)
T ss_pred CCCccc
Confidence 999999
No 165
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=21.18 E-value=87 Score=23.14 Aligned_cols=21 Identities=10% Similarity=-0.187 Sum_probs=17.3
Q ss_pred EEEeCCCCChHHHHHHHHHHh
Q 019250 47 VRLCGSPNSILTAYVRFALLY 67 (344)
Q Consensus 47 m~LY~~~~sP~s~RVRiaL~e 67 (344)
+.+|.++.||+|++..=.|..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~ 21 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEK 21 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHH
Confidence 367889999999998877765
No 166
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.00 E-value=95 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.3
Q ss_pred CCcEEEeCCCCChHHHHHHHHHH
Q 019250 44 TPSVRLCGSPNSILTAYVRFALL 66 (344)
Q Consensus 44 ~~~m~LY~~~~sP~s~RVRiaL~ 66 (344)
...+.+|+.+.||||++..=.+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 45788999999999999876665
No 167
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=20.90 E-value=3.1e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhhhhhhhchHHhHHHHHHhhccCCCCChhhH
Q 019250 183 STYSQLLELLLEHAQMEERVVFPGLEKDDRGLCKAANEEHARDLPIMNGIKEDIKATGVLDCGSPAYH 250 (344)
Q Consensus 183 ~~~~~L~~v~~~Hs~aEE~v~yP~l~~~~~g~~~~~~~eH~~~l~~~n~i~e~l~~i~~~~~~s~~~~ 250 (344)
+.+..+.+.++. +-|.|+.-+ -+-+-|+|.+++++.++|..+-.++-+|.
T Consensus 39 e~lksi~s~lQ~-------lrY~Yl~pe-----------el~~~e~~~~l~~~a~~ive~l~~ekdw~ 88 (219)
T COG2517 39 EALKSIESELQA-------LRYSYLEPE-----------ELVDTEQMKDLKEKAEGIVEALGGEKDWS 88 (219)
T ss_pred HHHHHHHHHHHh-------heeeccCHH-----------HhcccHHHHHHHHHHHHHHHhcCCcchHH
Confidence 356667777766 557777432 34466799999999999999998988994
Done!