BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019251
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24621|SIGC_ARATH RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC
PE=2 SV=1
Length = 571
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 188/304 (61%), Gaps = 21/304 (6%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQ 327
DL+Q
Sbjct: 360 DLIQ 363
>sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB
PE=2 SV=2
Length = 572
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
C++++IKS LV+ +A+NY+G G+ DL+Q
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis
thaliana GN=SIGF PE=1 SV=1
Length = 547
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
RE+LI + LV+ +A+ Y+ G+ F DLLQ
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>sp|P26683|RPOD_NOSS1 RNA polymerase sigma factor RpoD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpoD PE=3 SV=1
Length = 390
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL A E E+++ + + LER++ L ++ + + WA+A + + L
Sbjct: 90 GRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLH 149
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 150 IGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD3 PE=3 SV=1
Length = 320
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+I++ LV+ +A+ Y + DL+Q
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>sp|P0AGB3|RP32_ECOLI RNA polymerase sigma-32 factor OS=Escherichia coli (strain K12)
GN=rpoH PE=1 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 273 NCWAQAAGVSERVLKQHLAF--GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
N W + ER L + L + + LI S V+ +ARNY G G+P +DL+Q
Sbjct: 24 NAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQ 80
>sp|P0AGB4|RP32_ECOL6 RNA polymerase sigma-32 factor OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpoH PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 273 NCWAQAAGVSERVLKQHLAF--GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
N W + ER L + L + + LI S V+ +ARNY G G+P +DL+Q
Sbjct: 24 NAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQ 80
>sp|P0AGB5|RP32_ECO57 RNA polymerase sigma-32 factor OS=Escherichia coli O157:H7 GN=rpoH
PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 273 NCWAQAAGVSERVLKQHLAF--GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
N W + ER L + L + + LI S V+ +ARNY G G+P +DL+Q
Sbjct: 24 NAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQ 80
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>sp|P52323|RPOD_BORBU RNA polymerase sigma factor RpoD OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rpoD PE=3
SV=2
Length = 631
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 25/116 (21%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q
Sbjct: 377 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQ 422
>sp|A2APC3|TTLL9_MOUSE Probable tubulin polyglutamylase TTLL9 OS=Mus musculus GN=Ttll9
PE=2 SV=2
Length = 461
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274
R++ RN E+++ +V NL+R + LE+ESGK + C
Sbjct: 79 RISHFRNHYELTRKNYMVKNLKRFRKYLERESGKTEAAKC 118
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=rpoD PE=3 SV=1
Length = 585
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L+K+ LV+ +A+ Y G+ F DL+Q
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQ 378
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=rpoD PE=3 SV=1
Length = 585
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
L+K+ LV+ +A+ Y G+ F DL+Q
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQ 378
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus
GN=Ttll9 PE=2 SV=1
Length = 461
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274
R++ RN E+++ +V NL+R + LE+E+GK + C
Sbjct: 79 RISHFRNHYELTRKNYMVKNLKRFRKQLEREAGKTEAAKC 118
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa
GN=rpoD1 PE=3 SV=1
Length = 416
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
L IK L K A L W + K+ L G +E++++S LV+ +A
Sbjct: 137 PKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIA 196
Query: 313 RNYRGLGIPFSDLLQ 327
+ Y G+ F DL+Q
Sbjct: 197 KKYMNRGLSFQDLIQ 211
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2
SV=1
Length = 461
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274
R++ RN E+++ +V NL+R + LE+E+GK + C
Sbjct: 79 RISHFRNHYELTRKNYMVKNLKRFRKQLEREAGKLEAAKC 118
>sp|Q3SXZ7|TTLL9_HUMAN Probable tubulin polyglutamylase TTLL9 OS=Homo sapiens GN=TTLL9
PE=2 SV=3
Length = 439
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274
R++ RN E+++ +V NL+R + LE+E+GK + C
Sbjct: 97 RISHFRNHYELTRKNYMVKNLKRFRKQLEREAGKLEAAKC 136
>sp|Q59914|HRDD_STRGR RNA polymerase principal sigma factor HrdD OS=Streptomyces griseus
GN=hrdD PE=3 SV=1
Length = 332
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+GK + +AG S L+ +A G ++ I+S LV+ +AR Y G+P DL
Sbjct: 66 AGKILDGEVDSDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDL 125
Query: 326 LQ 327
+Q
Sbjct: 126 IQ 127
>sp|Q03066|RPSC_NOSS1 RNA polymerase sigma-C factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigC PE=3 SV=2
Length = 416
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
WA+ A ++ L++ + G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 156 WAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>sp|B2S1P9|FMT_BORHD Methionyl-tRNA formyltransferase OS=Borrelia hermsii (strain DAH)
GN=fmt PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 16 QSHF----FTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVN 71
QS F F TS+ S+ SFN L LS + + + QD +A CSF N
Sbjct: 148 QSQFEIKSFNTSADIFRYVSLN----SFNLV-LEALSKLDKGNIGIEQDSRQATYCSFFN 202
Query: 72 TQTVENDYSETE-EIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDALRLEREIL 130
Q D++ + EI+ K +C + + L LD E F +D +R
Sbjct: 203 KQHRILDFNLSAFEIKNKINAC--------NPWPLARAKLDDDEIIFHRADFIRTNDYSD 254
Query: 131 QQLGKLGALKLFNSHLSRIVKTSN-VLDLSDVHTEEQKMNDSRDYHMG 177
Q +GK + LF+ +VKT + +L L ++ +K+ D + ++ G
Sbjct: 255 QAIGK---IILFDPSRGILVKTGDGILLLLELQRAGRKVMDYKSFYNG 299
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=sigB PE=3 SV=2
Length = 329
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
R LK + G R L+++ LV+ LA+ Y G G+P DL+Q
Sbjct: 80 RDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sigC PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
Q VA L K TL+ SGK WA+ AG++ L+ G + +IK+ LV+
Sbjct: 128 QTVATL---KQTLK--SGK----KRWAELAGLTVEELENIEKQGITAKAHMIKANLRLVV 178
Query: 310 FLARNYRGLGIPFSDLLQ 327
+A+ Y+ G+ DL+Q
Sbjct: 179 SVAKKYQNRGLELLDLIQ 196
>sp|C0SP82|YOAE_BACSU Probable oxidoreductase YoaE OS=Bacillus subtilis (strain 168)
GN=yoaE PE=3 SV=1
Length = 680
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 6 RLNLKWVSPVQSHF-FTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPVKA 64
R+ L+ P++S F + T+ ++ + + R+G + + + + + D V
Sbjct: 370 RVLLETDPPIRSLFIYGTNPAVVAPEANKVRQGLLREDLFTVVHDLFLTETAAYADIVLP 429
Query: 65 YTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDALR 124
T +F NT + + +++Q G+ S+ FRLL E + + DSD +
Sbjct: 430 ATSAFENTDFYTSYWHHYIQLQQPVIERYGESKSNTEVFRLLAEAMGFTDQELKDSDEV- 488
Query: 125 LEREILQQLGKLGALKLFNSHLSRI 149
L R+ L N HL+ I
Sbjct: 489 LIRQALDHPD--------NPHLAEI 505
>sp|Q87S86|Y538_VIBPA Uncharacterized response regulatory protein VP0538 OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=VP0538 PE=3 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 4 GFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPVK 63
F LK V P CRL+ T R + SA LS I+ D+ Q P
Sbjct: 95 AFDYLLKPVDP----------CRLNKTVKRLNKVISQSALTQQLSAITPDTLD--QIPCI 142
Query: 64 AYT-CSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122
+ + T+TVE YS+ + +STS Q AS++ + L E +
Sbjct: 143 GHNRIVIMATETVECAYSDISGVHVRSTS---QTASTQLTLKTLEEK----------TPL 189
Query: 123 LRLEREILQQLGKLGALKLFNSHLSRIV 150
+R R+ L + + +KL + L+ I+
Sbjct: 190 VRCHRQYLVSIKAISEIKLLENGLAEII 217
>sp|P50508|RP32_ENTCL RNA polymerase sigma-32 factor OS=Enterobacter cloacae GN=rpoH PE=3
SV=1
Length = 285
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
LI S V+ +ARNY G G+P +DL+Q
Sbjct: 53 LILSHLRFVVHVARNYAGYGLPQADLIQ 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,831,729
Number of Sequences: 539616
Number of extensions: 4054220
Number of successful extensions: 12731
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 12587
Number of HSP's gapped (non-prelim): 192
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)