Query 019253
Match_columns 344
No_of_seqs 198 out of 1195
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 9.8E-52 2.1E-56 367.4 32.4 306 8-344 1-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 7.5E-40 1.6E-44 293.4 26.0 281 10-343 2-301 (305)
3 KOG0810 SNARE protein Syntaxin 100.0 1.9E-32 4.1E-37 253.1 27.5 248 47-338 32-284 (297)
4 KOG0811 SNARE protein PEP12/VA 99.9 3E-23 6.5E-28 188.8 26.3 222 50-323 16-243 (269)
5 COG5325 t-SNARE complex subuni 99.9 2.6E-22 5.7E-27 179.2 22.7 238 46-340 29-275 (283)
6 COG5074 t-SNARE complex subuni 99.9 2.2E-22 4.7E-27 174.8 21.1 231 52-340 22-268 (280)
7 KOG3894 SNARE protein Syntaxin 99.7 1.5E-13 3.2E-18 125.6 28.4 304 11-341 1-312 (316)
8 PF05739 SNARE: SNARE domain; 99.5 4.2E-13 9.2E-18 96.8 10.1 63 257-319 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.3 1.2E-11 2.7E-16 87.8 8.3 59 256-314 2-60 (60)
10 cd00179 SynN Syntaxin N-termin 99.2 4.3E-10 9.3E-15 95.3 14.9 126 50-175 1-130 (151)
11 KOG3202 SNARE protein TLG1/Syn 99.2 1.5E-08 3.3E-13 91.0 24.7 218 50-332 5-224 (235)
12 smart00397 t_SNARE Helical reg 99.2 1.2E-10 2.6E-15 84.3 9.2 63 252-314 4-66 (66)
13 smart00503 SynN Syntaxin N-ter 99.0 7.8E-09 1.7E-13 83.6 13.5 112 49-161 2-117 (117)
14 PF00804 Syntaxin: Syntaxin; 99.0 4.9E-09 1.1E-13 82.5 11.3 97 50-146 2-103 (103)
15 KOG3385 V-SNARE [Intracellular 98.2 1.4E-05 3.1E-10 63.0 9.4 83 256-339 32-114 (118)
16 KOG0810 SNARE protein Syntaxin 97.8 0.0056 1.2E-07 57.4 21.2 211 84-342 80-291 (297)
17 PF00957 Synaptobrevin: Synapt 97.7 0.0015 3.3E-08 50.1 12.2 59 260-318 3-61 (89)
18 PF14523 Syntaxin_2: Syntaxin- 97.5 0.0027 5.9E-08 49.8 12.3 97 60-162 1-100 (102)
19 KOG1666 V-SNARE [Intracellular 97.4 0.072 1.6E-06 47.0 23.3 88 254-342 129-216 (220)
20 KOG0860 Synaptobrevin/VAMP-lik 97.3 0.0055 1.2E-07 48.8 11.1 41 260-300 29-69 (116)
21 PF11416 Sed5p: Integral membr 97.2 0.00014 3E-09 42.9 1.1 23 8-30 2-24 (29)
22 PF10496 Syntaxin-18_N: SNARE- 97.2 0.0015 3.3E-08 50.0 6.9 67 11-79 1-67 (87)
23 KOG0811 SNARE protein PEP12/VA 97.1 0.016 3.4E-07 53.6 13.5 96 244-343 171-266 (269)
24 PF09753 Use1: Membrane fusion 97.1 0.015 3.3E-07 53.4 13.6 69 258-331 168-236 (251)
25 COG5074 t-SNARE complex subuni 96.6 0.03 6.4E-07 49.9 10.7 85 253-338 185-269 (280)
26 COG5325 t-SNARE complex subuni 96.4 0.066 1.4E-06 49.0 12.0 90 248-341 190-279 (283)
27 KOG3251 Golgi SNAP receptor co 96.0 1.1 2.4E-05 39.8 24.4 189 58-325 6-194 (213)
28 KOG3065 SNAP-25 (synaptosome-a 95.5 0.067 1.5E-06 49.6 8.3 57 257-313 215-271 (273)
29 PF03908 Sec20: Sec20; InterP 94.8 1.1 2.3E-05 34.6 12.0 50 281-330 29-78 (92)
30 KOG2678 Predicted membrane pro 92.9 2.8 6.1E-05 37.4 12.2 60 257-319 155-214 (244)
31 KOG3208 SNARE protein GS28 [In 92.6 7.3 0.00016 34.8 24.4 100 52-157 6-113 (231)
32 KOG0809 SNARE protein TLG2/Syn 92.4 1.7 3.6E-05 40.4 10.6 87 250-340 215-301 (305)
33 PF09177 Syntaxin-6_N: Syntaxi 91.1 4.7 0.0001 31.2 10.6 61 52-116 2-62 (97)
34 PF12352 V-SNARE_C: Snare regi 87.9 7.8 0.00017 27.5 10.1 57 260-316 8-64 (66)
35 PF03904 DUF334: Domain of unk 87.7 19 0.00041 32.3 12.9 89 253-341 64-167 (230)
36 PF10779 XhlA: Haemolysin XhlA 87.7 8.8 0.00019 27.9 10.0 52 286-340 18-69 (71)
37 PF05478 Prominin: Prominin; 87.3 7 0.00015 42.2 12.0 64 257-326 354-417 (806)
38 PF00957 Synaptobrevin: Synapt 87.3 11 0.00024 28.5 11.5 23 251-273 22-44 (89)
39 PF09889 DUF2116: Uncharacteri 86.9 1.3 2.7E-05 31.2 4.1 23 309-331 26-48 (59)
40 PF09889 DUF2116: Uncharacteri 85.7 1.1 2.4E-05 31.5 3.3 29 314-342 28-56 (59)
41 KOG0860 Synaptobrevin/VAMP-lik 85.7 4.5 9.9E-05 32.4 7.2 18 299-316 71-88 (116)
42 KOG0812 SNARE protein SED5/Syn 84.9 16 0.00035 34.0 11.3 76 260-339 234-309 (311)
43 PF09753 Use1: Membrane fusion 81.8 32 0.00069 31.5 12.3 74 264-340 167-242 (251)
44 KOG3850 Predicted membrane pro 79.4 47 0.001 32.2 12.5 47 263-309 309-356 (455)
45 PF06143 Baculo_11_kDa: Baculo 77.8 4 8.7E-05 30.8 4.0 12 308-319 19-30 (84)
46 KOG0859 Synaptobrevin/VAMP-lik 76.7 7.3 0.00016 34.2 5.8 34 260-293 125-158 (217)
47 PHA02844 putative transmembran 76.1 3.1 6.7E-05 30.4 2.9 9 321-329 46-54 (75)
48 PHA03054 IMV membrane protein; 74.8 3.6 7.7E-05 29.8 2.9 11 320-330 45-55 (72)
49 PHA02819 hypothetical protein; 74.3 3.6 7.9E-05 29.7 2.8 11 320-330 43-53 (71)
50 PF10717 ODV-E18: Occlusion-de 71.2 5.1 0.00011 30.0 3.1 17 326-342 28-44 (85)
51 PHA02650 hypothetical protein; 70.3 5.2 0.00011 29.6 2.9 9 320-328 46-54 (81)
52 PHA02692 hypothetical protein; 70.1 5.8 0.00013 28.7 3.1 10 320-329 42-51 (70)
53 PHA02975 hypothetical protein; 70.1 6.5 0.00014 28.3 3.3 10 320-329 41-50 (69)
54 PRK10299 PhoPQ regulatory prot 67.5 7.1 0.00015 25.8 2.8 17 319-335 2-18 (47)
55 PF04102 SlyX: SlyX; InterPro 67.1 38 0.00082 24.5 7.0 49 260-308 4-52 (69)
56 PF02346 Vac_Fusion: Chordopox 64.9 43 0.00094 23.4 6.5 45 261-305 2-46 (57)
57 PF11166 DUF2951: Protein of u 63.9 66 0.0014 24.8 11.2 42 261-302 12-53 (98)
58 PF14992 TMCO5: TMCO5 family 63.3 1.2E+02 0.0025 28.4 10.9 52 255-306 125-176 (280)
59 PF05366 Sarcolipin: Sarcolipi 60.6 14 0.00031 21.7 2.9 24 319-342 3-26 (31)
60 PRK14762 membrane protein; Pro 60.3 16 0.00034 20.9 2.9 8 323-330 6-13 (27)
61 PHA02414 hypothetical protein 57.6 88 0.0019 24.2 7.7 52 261-316 30-81 (111)
62 PF00523 Fusion_gly: Fusion gl 57.6 17 0.00036 36.8 4.8 21 292-312 442-462 (490)
63 PF07889 DUF1664: Protein of u 57.4 1.1E+02 0.0023 25.1 9.0 82 52-145 40-122 (126)
64 KOG3065 SNAP-25 (synaptosome-a 57.0 90 0.0019 29.1 9.2 49 269-317 88-136 (273)
65 PHA02675 ORF104 fusion protein 56.5 72 0.0016 24.0 6.7 39 267-305 37-75 (90)
66 PF04210 MtrG: Tetrahydrometha 56.4 75 0.0016 23.1 7.2 17 297-313 21-37 (70)
67 KOG2678 Predicted membrane pro 55.9 1.6E+02 0.0034 26.6 10.5 57 263-322 154-214 (244)
68 PRK00295 hypothetical protein; 55.3 77 0.0017 22.9 7.8 47 261-307 6-52 (68)
69 PF06422 PDR_CDR: CDR ABC tran 54.5 15 0.00033 28.8 3.2 27 306-332 32-58 (103)
70 PRK00736 hypothetical protein; 54.0 81 0.0018 22.7 7.8 46 261-306 6-51 (68)
71 cd00193 t_SNARE Soluble NSF (N 53.2 66 0.0014 21.5 8.1 53 265-317 4-56 (60)
72 PF01519 DUF16: Protein of unk 52.2 1.1E+02 0.0025 23.9 7.8 47 259-305 52-98 (102)
73 PRK02793 phi X174 lysis protei 51.7 92 0.002 22.7 7.8 47 260-306 8-54 (72)
74 KOG0859 Synaptobrevin/VAMP-lik 51.3 49 0.0011 29.2 6.0 13 285-297 137-149 (217)
75 PF10267 Tmemb_cc2: Predicted 50.9 2.6E+02 0.0056 27.6 17.4 33 284-316 294-327 (395)
76 PRK02119 hypothetical protein; 50.3 99 0.0021 22.6 8.1 48 259-306 8-55 (73)
77 PRK04325 hypothetical protein; 50.0 1E+02 0.0022 22.6 8.2 46 261-306 10-55 (74)
78 PF01601 Corona_S2: Coronaviru 49.7 7.1 0.00015 40.0 0.8 59 50-114 254-319 (610)
79 PF05957 DUF883: Bacterial pro 49.7 1.1E+02 0.0025 23.2 11.4 16 314-329 65-80 (94)
80 KOG1693 emp24/gp25L/p24 family 48.0 79 0.0017 27.9 6.8 16 258-273 129-144 (209)
81 PF04906 Tweety: Tweety; Inte 47.9 52 0.0011 32.5 6.5 21 320-340 183-203 (406)
82 PF12911 OppC_N: N-terminal TM 45.5 41 0.0009 22.7 4.0 14 311-324 5-18 (56)
83 PF15102 TMEM154: TMEM154 prot 45.3 9.7 0.00021 31.9 0.8 22 323-344 58-79 (146)
84 PF10303 DUF2408: Protein of u 44.6 1.7E+02 0.0037 24.1 8.2 58 58-115 37-96 (134)
85 PF06072 Herpes_US9: Alphaherp 44.1 58 0.0013 22.9 4.3 8 307-314 11-18 (60)
86 PF12575 DUF3753: Protein of u 43.6 19 0.00041 26.4 2.0 22 321-342 43-64 (72)
87 KOG0862 Synaptobrevin/VAMP-lik 42.4 2.2E+02 0.0048 25.5 8.8 35 262-296 136-170 (216)
88 PF07851 TMPIT: TMPIT-like pro 41.5 1.9E+02 0.0041 27.7 8.9 52 61-115 3-54 (330)
89 PF07889 DUF1664: Protein of u 41.4 1.2E+02 0.0027 24.7 6.7 38 259-296 88-125 (126)
90 PF10498 IFT57: Intra-flagella 41.3 3.4E+02 0.0075 26.3 11.4 20 45-64 188-207 (359)
91 KOG0994 Extracellular matrix g 40.6 4.1E+02 0.0089 30.1 11.9 97 54-152 1653-1750(1758)
92 COG4942 Membrane-bound metallo 40.5 2.8E+02 0.006 27.6 10.0 62 255-316 40-101 (420)
93 COG3736 VirB8 Type IV secretor 40.4 59 0.0013 29.7 5.1 33 310-342 29-63 (239)
94 PRK04406 hypothetical protein; 40.3 1.5E+02 0.0032 21.8 8.4 47 260-306 11-57 (75)
95 PLN03160 uncharacterized prote 39.3 18 0.00039 32.5 1.7 7 320-326 36-42 (219)
96 PF13253 DUF4044: Protein of u 38.3 28 0.00061 21.8 1.9 19 324-342 11-29 (35)
97 PF07432 Hc1: Histone H1-like 38.3 1.6E+02 0.0034 23.7 6.5 46 272-317 2-47 (123)
98 PF01540 Lipoprotein_7: Adhesi 38.1 2.5E+02 0.0055 26.0 8.7 51 51-108 217-267 (353)
99 PF11598 COMP: Cartilage oligo 37.7 79 0.0017 21.0 4.1 27 264-290 5-31 (45)
100 PF10046 BLOC1_2: Biogenesis o 37.0 74 0.0016 24.7 4.6 29 52-80 4-32 (99)
101 PRK14710 hypothetical protein; 36.6 43 0.00092 24.3 2.9 18 323-340 10-27 (86)
102 PF13314 DUF4083: Domain of un 36.2 53 0.0011 22.9 3.1 10 333-342 17-26 (58)
103 PF03904 DUF334: Domain of unk 35.5 1.5E+02 0.0033 26.8 6.8 35 304-341 136-170 (230)
104 KOG1666 V-SNARE [Intracellular 35.3 87 0.0019 28.0 5.2 31 89-119 32-62 (220)
105 PF05478 Prominin: Prominin; 34.9 2.4E+02 0.0053 30.5 9.7 20 323-342 411-430 (806)
106 PRK10573 type IV pilin biogene 34.0 1.6E+02 0.0035 28.6 7.6 53 265-317 111-166 (399)
107 KOG3894 SNARE protein Syntaxin 33.5 4.3E+02 0.0092 25.1 10.1 41 292-336 271-311 (316)
108 PHA02650 hypothetical protein; 32.4 62 0.0013 24.1 3.2 21 321-341 44-64 (81)
109 PHA03240 envelope glycoprotein 32.3 45 0.00097 29.8 2.9 13 321-333 210-222 (258)
110 PHA02819 hypothetical protein; 32.1 81 0.0018 22.9 3.7 24 318-341 37-61 (71)
111 smart00502 BBC B-Box C-termina 32.0 2.4E+02 0.0052 21.8 8.4 55 264-318 36-91 (127)
112 PF07798 DUF1640: Protein of u 32.0 3.3E+02 0.0071 23.3 12.6 40 292-331 124-165 (177)
113 COG4064 MtrG Tetrahydromethano 32.0 2E+02 0.0044 20.9 7.3 8 291-298 25-32 (75)
114 PF01102 Glycophorin_A: Glycop 31.8 56 0.0012 26.6 3.2 11 323-333 65-75 (122)
115 PF04505 Dispanin: Interferon- 31.8 33 0.00071 25.7 1.8 21 306-326 48-68 (82)
116 COG4068 Uncharacterized protei 31.5 51 0.0011 23.1 2.5 6 326-331 45-50 (64)
117 COG1459 PulF Type II secretory 31.5 1.4E+02 0.0031 29.3 6.7 26 276-301 121-146 (397)
118 TIGR03715 KxYKxGKxW KxYKxGKxW 31.2 38 0.00083 20.0 1.7 15 317-331 7-21 (29)
119 PHA02690 hypothetical protein; 30.3 2.3E+02 0.005 21.1 7.4 15 328-342 46-60 (90)
120 PHA02849 putative transmembran 30.0 67 0.0015 23.8 3.0 8 333-340 26-33 (82)
121 PHA03054 IMV membrane protein; 30.0 74 0.0016 23.1 3.2 21 321-341 43-63 (72)
122 TIGR02833 spore_III_AB stage I 29.5 1.6E+02 0.0035 25.2 6.0 11 272-282 110-120 (170)
123 PRK08307 stage III sporulation 29.5 1.6E+02 0.0036 25.2 6.0 11 272-282 111-121 (171)
124 PF12325 TMF_TATA_bd: TATA ele 29.3 2.6E+02 0.0057 22.6 6.8 40 61-100 67-107 (120)
125 KOG3202 SNARE protein TLG1/Syn 29.1 4.4E+02 0.0096 24.0 10.8 29 281-309 180-208 (235)
126 PF14812 PBP1_TM: Transmembran 28.6 3.3 7.1E-05 31.1 -4.0 7 320-326 64-70 (81)
127 COG4640 Predicted membrane pro 28.4 72 0.0016 31.2 3.8 12 305-316 30-41 (465)
128 PRK09793 methyl-accepting prot 27.6 6E+02 0.013 25.8 10.7 53 254-306 430-482 (533)
129 PRK15041 methyl-accepting chem 27.6 5.9E+02 0.013 26.0 10.7 53 254-306 434-486 (554)
130 PHA03332 membrane glycoprotein 27.3 6.6E+02 0.014 28.2 10.8 26 90-115 938-963 (1328)
131 PF13807 GNVR: G-rich domain o 27.3 2.5E+02 0.0055 20.6 8.2 23 261-283 5-27 (82)
132 PRK00846 hypothetical protein; 27.0 2.7E+02 0.0058 20.7 8.2 49 260-308 13-61 (77)
133 PF13198 DUF4014: Protein of u 27.0 73 0.0016 23.2 2.7 11 323-333 18-28 (72)
134 PHA02844 putative transmembran 27.0 89 0.0019 23.0 3.2 19 323-341 45-63 (75)
135 PRK11466 hybrid sensory histid 26.8 6.6E+02 0.014 27.1 11.5 26 301-326 312-337 (914)
136 PF00015 MCPsignal: Methyl-acc 26.7 4E+02 0.0088 22.7 11.2 59 254-312 129-187 (213)
137 PF03408 Foamy_virus_ENV: Foam 26.4 82 0.0018 33.7 4.1 30 313-342 48-80 (981)
138 cd07912 Tweety_N N-terminal do 26.4 3.6E+02 0.0078 26.8 8.4 6 321-326 207-212 (418)
139 PF04912 Dynamitin: Dynamitin 26.4 2.2E+02 0.0047 27.8 7.0 86 52-145 302-387 (388)
140 PHA02689 ORF051 putative membr 26.3 84 0.0018 25.6 3.3 23 320-342 27-49 (128)
141 PF11945 WASH_WAHD: WAHD domai 26.2 3.1E+02 0.0068 25.9 7.7 43 273-316 35-77 (297)
142 PRK01026 tetrahydromethanopter 26.1 2.8E+02 0.006 20.6 7.1 12 301-312 28-39 (77)
143 PF05377 FlaC_arch: Flagella a 25.8 2.3E+02 0.005 19.6 5.9 21 257-277 25-45 (55)
144 PRK10404 hypothetical protein; 25.6 3.3E+02 0.0071 21.3 12.0 41 291-331 41-89 (101)
145 PRK10132 hypothetical protein; 25.4 3.4E+02 0.0075 21.5 11.6 41 291-331 48-95 (108)
146 PF09548 Spore_III_AB: Stage I 25.3 2.1E+02 0.0046 24.3 6.0 8 272-279 110-117 (170)
147 smart00397 t_SNARE Helical reg 25.3 2.2E+02 0.0048 19.2 9.4 48 258-305 17-64 (66)
148 PHA03046 Hypothetical protein; 25.3 3.9E+02 0.0084 22.0 7.2 53 252-304 76-128 (142)
149 TIGR01149 mtrG N5-methyltetrah 25.2 2.7E+02 0.0059 20.2 7.3 13 300-312 24-36 (70)
150 PF13800 Sigma_reg_N: Sigma fa 24.9 71 0.0015 24.4 2.7 8 311-318 5-12 (96)
151 COG1256 FlgK Flagellar hook-as 24.9 7.9E+02 0.017 25.4 11.6 58 7-80 106-163 (552)
152 PRK11875 psbT photosystem II r 24.9 1.2E+02 0.0025 18.4 2.8 14 329-342 9-22 (31)
153 PRK15048 methyl-accepting chem 24.6 7.2E+02 0.016 25.2 10.7 51 255-305 433-483 (553)
154 PF09577 Spore_YpjB: Sporulati 24.4 5.4E+02 0.012 23.4 9.8 18 323-340 200-217 (232)
155 KOG2546 Abl interactor ABI-1, 24.0 2.9E+02 0.0062 27.5 7.0 53 254-306 49-101 (483)
156 PF00429 TLV_coat: ENV polypro 23.9 2.7E+02 0.0058 28.9 7.3 35 256-290 431-465 (561)
157 PHA03164 hypothetical protein; 23.7 1.2E+02 0.0027 22.4 3.4 13 331-343 65-77 (88)
158 PF15188 CCDC-167: Coiled-coil 23.6 2.5E+02 0.0054 21.3 5.2 21 297-317 45-65 (85)
159 PHA02967 hypothetical protein; 23.6 96 0.0021 25.2 3.1 22 321-342 25-46 (128)
160 TIGR02956 TMAO_torS TMAO reduc 23.4 7.6E+02 0.016 26.8 11.2 24 89-112 73-96 (968)
161 PF10661 EssA: WXG100 protein 23.3 91 0.002 26.1 3.2 7 334-340 132-138 (145)
162 PF14715 FixP_N: N-terminal do 23.2 1.5E+02 0.0032 20.2 3.6 19 323-342 23-41 (51)
163 PF10661 EssA: WXG100 protein 23.0 1E+02 0.0022 25.9 3.3 25 320-344 115-139 (145)
164 PF05055 DUF677: Protein of un 23.0 2.7E+02 0.006 26.8 6.7 13 282-294 151-163 (336)
165 PF06789 UPF0258: Uncharacteri 23.0 49 0.0011 27.9 1.5 12 307-318 115-126 (159)
166 PF06738 DUF1212: Protein of u 22.8 1.6E+02 0.0035 25.3 4.9 28 300-327 80-108 (193)
167 PF07127 Nodulin_late: Late no 22.6 75 0.0016 21.6 2.1 16 326-341 5-20 (54)
168 TIGR02120 GspF general secreti 22.4 3.2E+02 0.007 26.5 7.4 30 275-304 123-152 (399)
169 smart00503 SynN Syntaxin N-ter 22.3 3.7E+02 0.0079 20.7 11.0 28 136-163 85-112 (117)
170 PF11026 DUF2721: Protein of u 22.0 4.4E+02 0.0094 21.4 7.1 13 308-320 49-61 (130)
171 PF06015 Chordopox_A30L: Chord 21.8 2.1E+02 0.0046 20.8 4.3 33 50-82 22-54 (71)
172 CHL00031 psbT photosystem II p 21.6 1.2E+02 0.0025 18.7 2.5 14 329-342 9-22 (33)
173 COG2966 Uncharacterized conser 21.1 1.5E+02 0.0033 27.2 4.5 40 295-334 97-137 (250)
174 COG4068 Uncharacterized protei 20.9 1.8E+02 0.004 20.4 3.7 26 306-331 28-53 (64)
175 PF05739 SNARE: SNARE domain; 20.8 2.8E+02 0.0061 18.8 9.9 55 255-309 6-60 (63)
176 PF15168 TRIQK: Triple QxxK/R 20.8 3.6E+02 0.0078 20.0 6.1 21 323-343 53-73 (79)
177 PF10046 BLOC1_2: Biogenesis o 20.7 4E+02 0.0086 20.5 10.5 41 258-302 40-80 (99)
178 PF03729 DUF308: Short repeat 20.5 2.6E+02 0.0056 19.2 4.8 39 303-341 32-71 (72)
179 CHL00198 accA acetyl-CoA carbo 20.3 3.7E+02 0.0081 25.7 7.0 53 60-114 11-63 (322)
180 PF13937 DUF4212: Domain of un 20.3 92 0.002 23.4 2.3 26 314-339 3-28 (81)
181 PF05399 EVI2A: Ectropic viral 20.1 1.2E+02 0.0026 27.0 3.3 10 334-343 140-149 (227)
182 PF02439 Adeno_E3_CR2: Adenovi 20.0 1.6E+02 0.0034 18.8 2.9 15 326-340 7-21 (38)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-52 Score=367.44 Aligned_cols=306 Identities=45% Similarity=0.660 Sum_probs=247.5
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCCCCCCCCccch-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 019253 8 TSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADE-QRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDD 86 (344)
Q Consensus 8 ~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d 86 (344)
|++||||.||++++.++++++...+.. .+.+ +.....+.++|...|..|.++|..+.++|++|..|.|++++|+|
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~----~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~D 76 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVN----QADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDD 76 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccc----cCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 799999999999999999987543322 1122 44667777899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019253 87 PTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESR 166 (344)
Q Consensus 87 ~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R 166 (344)
++.||.+||..||+++..++..|.+|+.+.+..+...+.+...|.+|||..|..+|.+++.+|+++++.|++.+|+.+.|
T Consensus 77 r~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R 156 (311)
T KOG0812|consen 77 RPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNR 156 (311)
T ss_pred cchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999998744332123455899999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCC----CCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHH
Q 019253 167 RQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG----SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQ 242 (344)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (344)
+.+|....+.....|..+ ..+.+.+|..- ......+.....+|.+. . ++
T Consensus 157 ~dkfs~~~a~~~a~p~~n------------~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~--------------~-qq 209 (311)
T KOG0812|consen 157 RDKFSASYASLNANPVSN------------SAARLHPLKLLVDPKDEASQDVESLNMGDSSN--------------P-QQ 209 (311)
T ss_pred HHHhccccCCCCCcccCc------------ccccCCchhhhcCchhhcccccccccccCCCC--------------C-HH
Confidence 999976533322123210 00111111100 00001110000111110 1 35
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 243 QQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 243 ~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
+|++++++.++|+++|..++++||.+|.||++||.+||+||.+|||++.|||+||+++..||+.|+.+|.|++++.++||
T Consensus 210 qQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNR 289 (311)
T KOG0812|consen 210 QQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNR 289 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccch
Confidence 67777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC
Q 019253 323 WLMIKIFFVLIFFLMIFLFFVA 344 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~~~ 344 (344)
|+++.||+|||||+|+|+||++
T Consensus 290 wLmvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 290 WLMVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-40 Score=293.37 Aligned_cols=281 Identities=20% Similarity=0.263 Sum_probs=224.3
Q ss_pred cccchHHHHHHHHHHhhhcCCCCCCCCCCcc--------------chhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 10 FRDRTFEFQSVAERLRKTVSSQNGPSSSSKA--------------DEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLA 75 (344)
Q Consensus 10 ~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~ 75 (344)
.||||.-|..+.+++.......+..++.++. .+..+....+..|.+.+++|...+..++.++++|.
T Consensus 2 tRnrT~lF~~~Rn~~~~~r~~~~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eLg 81 (305)
T KOG0809|consen 2 TRNRTELFLLYRNNASHNRQPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDELG 81 (305)
T ss_pred cchHHHHHHHHHhhhhhhccccccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998776555332222111 11112223466899999999999999999999999
Q ss_pred HHhccc--CCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 019253 76 KLAKRT--SVFDDPT---MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFK 150 (344)
Q Consensus 76 ~l~~~~--~~f~d~~---~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~ 150 (344)
++|.++ |.|+|.. .+|+.||.+|+++|.+|++.|+.+....+. .++.+...+.|++..+..+|+.++.+||
T Consensus 82 k~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~----~~~~e~~~~~n~~~~la~~LQ~~s~~fR 157 (305)
T KOG0809|consen 82 KAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ----LSPSERLLRKNAQGYLALQLQTLSREFR 157 (305)
T ss_pred HHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999995 4599985 489999999999999999999998864332 3456778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhh
Q 019253 151 EVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQ 230 (344)
Q Consensus 151 ~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~ 230 (344)
..|+.|.++++.+.++-..|.... .| .... .+|.+-+
T Consensus 158 ~~Qs~YLK~l~~~ee~~~~~e~~~-----~~--------------------~~~~-------------~dd~d~~----- 194 (305)
T KOG0809|consen 158 GLQSKYLKRLRNREENSQEYEDSL-----DN--------------------TVDL-------------PDDEDFS----- 194 (305)
T ss_pred HHHHHHHHHhhchhhcccchhhhc-----cc--------------------cccC-------------cchhhhh-----
Confidence 999999999988777665543210 01 0000 0011111
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHH
Q 019253 231 QHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 310 (344)
Q Consensus 231 ~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~e 310 (344)
....+++|+++.+.++.++.+|++||.++.++|.||++||+||+.||.+||++||||||||+++..+|+.|.++
T Consensus 195 ------~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~ke 268 (305)
T KOG0809|consen 195 ------DRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKE 268 (305)
T ss_pred ------hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHH
Confidence 12234566666677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHHHHh
Q 019253 311 LLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV 343 (344)
Q Consensus 311 L~ka~~~~~~~r~~~~~i~~vl~~~~l~~~~~~ 343 (344)
|.||..|||++++++|++++++++|++|+++++
T Consensus 269 L~KAe~yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 269 LHKAERYQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 999999999999888888888888888877765
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=253.13 Aligned_cols=248 Identities=20% Similarity=0.273 Sum_probs=185.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-
Q 019253 47 VTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV--FDDP--TMEIQELTAVIKQDITALNSAVVDLQLVSNSRND- 121 (344)
Q Consensus 47 ~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~--f~d~--~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~- 121 (344)
...+++|+..+++|...|..+...+++|.++|.+... -.++ ..+++.+...|++....++..|+.++........
T Consensus 32 ~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~ 111 (297)
T KOG0810|consen 32 DSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQ 111 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3678999999999999999999999999999966221 2222 2589999999999999999999999875433221
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCC
Q 019253 122 GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSP 201 (344)
Q Consensus 122 ~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p 201 (344)
+.++...+++++....+..+|.+++..|+.++..|.+++|.+..|+..+..+...+. +.+....+ +|.+
T Consensus 112 ~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~d----------e~ie~~ie-~g~~ 180 (297)
T KOG0810|consen 112 NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTD----------EEIEEMIE-SGGS 180 (297)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCCh----------HHHHHHHH-CCCh
Confidence 245667789999999999999999999999999999999999999977665422111 01111010 0000
Q ss_pred CCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 202 PPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLAT 281 (344)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~ 281 (344)
. . |++ ....... + .......+++||++|..||++|.||++||.||+.
T Consensus 181 ----------~-~-----------f~~-------~~i~~~~-~---~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~ 227 (297)
T KOG0810|consen 181 ----------E-V-----------FTQ-------KAIQDRG-Q---AKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAV 227 (297)
T ss_pred ----------H-H-----------HHH-------HHHHHhh-h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 100 0000000 1 1134678999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 019253 282 LVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMI 338 (344)
Q Consensus 282 lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~l~ 338 (344)
||..||+|||+||+||+.|.+||++|..+|++|.+|++++|+|.|+++++++|++++
T Consensus 228 LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 228 LVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHH
Confidence 999999999999999999999999999999999999998774433333333333333
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-23 Score=188.81 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=154.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPT---MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSD 126 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~---~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~ 126 (344)
+.+|...+.+|...|..+......|.+.+...+.+.|.. ..++.....+.+.++.+...|+.+..... ..
T Consensus 16 ~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-------~~ 88 (269)
T KOG0811|consen 16 PFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-------ES 88 (269)
T ss_pred CCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------hh
Confidence 358999999999999999999999999999877777775 36777777777778888888877776433 23
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCC
Q 019253 127 TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWAN 206 (344)
Q Consensus 127 ~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~ 206 (344)
+.+..+.+...|...|....+.|..+|..-.+..|. .+...++..+ .++.. .++.
T Consensus 89 ~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~------~~~a~~s~~s-~~~~~---------------~~~~--- 143 (269)
T KOG0811|consen 89 DLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKI------PMVARGSQNS-QQLDE---------------ESPR--- 143 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc------cccccccccc-hhhhh---------------hhhh---
Confidence 446777777777777777777777777766555540 0000000000 00000 0000
Q ss_pred CCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 207 GSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQM---VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLV 283 (344)
Q Consensus 207 ~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l---~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV 283 (344)
..+.+.... .+ ..+.+.|.+. .+.+...+++|.++|.+||..|.||++||+||+.||
T Consensus 144 --------------~~~~~~~~~--~~----~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV 203 (269)
T KOG0811|consen 144 --------------VDELSNNGS--QS----QQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLV 203 (269)
T ss_pred --------------hhhhhccch--hh----hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00 0000111111 123567889999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 019253 284 SQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 323 (344)
Q Consensus 284 ~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 323 (344)
++||++||.||+||+.|..||+.|+.+|.||.+|++++|+
T Consensus 204 ~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k 243 (269)
T KOG0811|consen 204 HEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARK 243 (269)
T ss_pred HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987663
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.6e-22 Score=179.21 Aligned_cols=238 Identities=21% Similarity=0.280 Sum_probs=160.4
Q ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 019253 46 AVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRT--SVFDDPT---MEIQELTAVIKQDITALNSAVVDLQLVSNSRN 120 (344)
Q Consensus 46 ~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~--~~f~d~~---~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~ 120 (344)
......-|...+..|...+..++.....|.+-..+. +.|.+.. .+|+.|+..|.+++.+|.+-++..-.......
T Consensus 29 ~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~ 108 (283)
T COG5325 29 DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF 108 (283)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999999999999999888874 4488875 58899999999999999998866543221110
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCC
Q 019253 121 DGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSS 200 (344)
Q Consensus 121 ~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 200 (344)
.....-.-.|-......+++..+..|++.+..|.+.+.. +-. +. .|+.+ ..+..
T Consensus 109 ---~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~------~~~-----~~-~~l~e-----ee~e~------ 162 (283)
T COG5325 109 ---LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN------KNN-----DQ-HPLEE-----EEDEE------ 162 (283)
T ss_pred ---HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh------ccc-----cc-Cchhh-----hhhhh------
Confidence 001112223344455677777888888888877665511 100 00 12100 00000
Q ss_pred CCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 201 PPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMV----PLQDSYMQSRAEALQNVESTIHELGNIF 276 (344)
Q Consensus 201 p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~----~~~~~~~~~r~~~i~~ie~~i~eL~~lf 276 (344)
-. .+ .+ ..++.+|..+. +++..++.+|.++|.+|+++|.||++||
T Consensus 163 -------------~~-----~~-~~------------sq~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF 211 (283)
T COG5325 163 -------------SL-----SS-LG------------SQQTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIF 211 (283)
T ss_pred -------------hh-----hc-cc------------hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00 01112222222 2344568899999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Q 019253 277 NQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 277 ~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~l~~~ 340 (344)
.||+++|.+||+.|||||+|++++..|++.|++||.||..|+|..++|-.+++++|+||++++.
T Consensus 212 ~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~ 275 (283)
T COG5325 212 RDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVS 275 (283)
T ss_pred HHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998755443334444444444443
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.2e-22 Score=174.76 Aligned_cols=231 Identities=16% Similarity=0.269 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCChH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV--FDDPTM----EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISS 125 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~--f~d~~~----eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~ 125 (344)
.|......|.++++.+...+..+..+|+.... |..... .++..+.+.+.+=.++...|+.++.. .
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~---------~ 92 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERD---------G 92 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc---------c
Confidence 56669999999999999999999999998432 332222 23333333333333333333333221 0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCC
Q 019253 126 DTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWA 205 (344)
Q Consensus 126 ~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~ 205 (344)
-...-++.+....+.+|.++.++|+.++..|.+..+++..|+..+..+.++.. ++ .+
T Consensus 93 ihl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEd--ev---------e~------------ 149 (280)
T COG5074 93 IHLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATED--EV---------EA------------ 149 (280)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchH--HH---------HH------------
Confidence 11133356667788999999999999999999999998888877765544331 11 00
Q ss_pred CCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 206 NGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMV-------PLQDSYMQSRAEALQNVESTIHELGNIFNQ 278 (344)
Q Consensus 206 ~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~-------~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~ 278 (344)
.. .|++++ +..+|-.|- .....+++.||.+|.+||++|.||.+||++
T Consensus 150 --------aI----nd~nG~--------------qvfsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfnd 203 (280)
T COG5074 150 --------AI----NDVNGQ--------------QVFSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFND 203 (280)
T ss_pred --------Hh----cccchH--------------HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 111110 012222221 023567899999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHH
Q 019253 279 LATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS---SNRWLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 279 l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~---~~r~~~~~i~~vl~~~~l~~~ 340 (344)
|++||.+|.+++|.|+.|++++..||+.|+..+.+|.+|.+ ++||.|++|++++|+|++.|+
T Consensus 204 m~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 204 MEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965 466888777777776666655
No 7
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.5e-13 Score=125.64 Aligned_cols=304 Identities=15% Similarity=0.108 Sum_probs=186.3
Q ss_pred ccchHHHHHHHHHHhhhcCCCCCCCCCCccchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHH
Q 019253 11 RDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTME 90 (344)
Q Consensus 11 ~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~e 90 (344)
+|+|..|+..|...+..++++... ...++.....++.+.+.|...|.++-..|..+...+-+..+-...- ..+| .+
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~-~~~~~~~~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~-~mtd--~e 76 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGG-DAHVERKQEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDF-RMTD--AE 76 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccC-CCCcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhH--HH
Confidence 599999999999999888765321 1122222457788889999999999999999999998776655421 1112 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhh
Q 019253 91 IQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH----ESR 166 (344)
Q Consensus 91 I~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~----~~R 166 (344)
-+..-.+.-..+..|...|..|....... .+.+...|.+.|...|..-+++.-+.|...-..+.+..-.. .-+
T Consensus 77 kd~id~e~~~fi~~~t~~~~~l~~~~~~~---h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l~~~rl~vl~ 153 (316)
T KOG3894|consen 77 KDEIDQECRLFIQQYTEKIEQLINYEMEE---HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENELSEKRLSVLA 153 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHh
Confidence 44445566667899999998887755443 35677888888888887777766666654433332222111 001
Q ss_pred hhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHh
Q 019253 167 RQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQ 246 (344)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~ 246 (344)
+.......++.. .+. +..++............|...+.+ +..+.+....+.+. ..+..|.|
T Consensus 154 ~~~~~~~~s~~~-~~~-~~~~~~~~~en~~~~~~~~~~s~~---~~e~~~~~~~~~e~--------------~~s~e~~Q 214 (316)
T KOG3894|consen 154 CLDIKYVESKFQ-TIQ-NERLSKDNKENTLSERADDNRSLA---DSELGQDEEKHYED--------------PLSKEQVQ 214 (316)
T ss_pred hcchhhccCchh-hhh-hhcchhhhHHHHHhhcchhhhccc---chhhcCcccccCCc--------------cccHHHHH
Confidence 111000000000 000 000000000000000111111100 11111111111111 01123444
Q ss_pred hhh-hh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 247 MVP-LQ---DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 247 l~~-~~---~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
+++ ++ .....+-.+++++|++.|.|+..|..-|+++|.+|..-||.|-+++..|..||+.||++|+||.....+.|
T Consensus 215 ~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r 294 (316)
T KOG3894|consen 215 LLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLR 294 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccch
Confidence 443 22 23345566899999999999999999999999999999999999999999999999999999999988877
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~ 341 (344)
.|++ +|++++.|+++|+-
T Consensus 295 ~~~l-f~llvlsf~lLFld 312 (316)
T KOG3894|consen 295 VFLL-FFLLVLSFSLLFLD 312 (316)
T ss_pred hHHH-HHHHHHHHHHHHHh
Confidence 5543 67777888888874
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.48 E-value=4.2e-13 Score=96.79 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 319 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~ 319 (344)
+|+++|..|+.+|.+|++||.+|+.+|.+|+++||+|++||+.|..++..|+.+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999999999999875
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.30 E-value=1.2e-11 Score=87.82 Aligned_cols=59 Identities=42% Similarity=0.566 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
++|++++..|+.+|.+|++||.+|+.+|.+|+++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999999999999999999999999999875
No 10
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.22 E-value=4.3e-10 Score=95.31 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=106.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDD-P---TMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISS 125 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d-~---~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~ 125 (344)
+++|+..++.|...|..|+..+..|..+|+..+...| . ..+++.+...|+..++.+...|+.|+..........++
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s 80 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGS 80 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 4689999999999999999999999999998433333 2 25899999999999999999999998754332211245
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCC
Q 019253 126 DTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTAS 175 (344)
Q Consensus 126 ~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~ 175 (344)
...+++++++..|..+|.+++..|+.+|..|.+++|.+..|+.+++.+..
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~ 130 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEA 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67899999999999999999999999999999999999999988876544
No 11
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.5e-08 Score=90.98 Aligned_cols=218 Identities=18% Similarity=0.171 Sum_probs=138.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--CCCch
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDG--ISSDT 127 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~--~~~~~ 127 (344)
.+.|+....++.+....+...+.+-..+.+. ...+.+.+|..|+..+...-..|+.+........+. ....+
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~------~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~E 78 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD------TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFE 78 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHH
Confidence 4679988888888888888877766666554 135666777777755555555555555433322211 23446
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCC
Q 019253 128 TSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG 207 (344)
Q Consensus 128 ~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~ 207 (344)
..-|+..+..+..++..+-..|.. ..+... .-|... .. .| +.|....+
T Consensus 79 l~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~l-~~-------~~-----------------~~~~~~~~- 126 (235)
T KOG3202|consen 79 LSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDIL-LG-------PE-----------------KSPNLDEA- 126 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchhhh-cC-------CC-----------------CCCchhhh-
Confidence 677888888888888887777766 111110 001100 00 00 00000000
Q ss_pred CCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019253 208 SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG 287 (344)
Q Consensus 208 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qg 287 (344)
..... +.++++ ...+.|++ ++++.++.+..|+.+|.-++.+-..|+..+.+|+
T Consensus 127 ---~~~~~--~~D~v~---------------~~~~~qqq-------m~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~ 179 (235)
T KOG3202|consen 127 ---MSRAS--GLDNVQ---------------EIVQLQQQ-------MLQEQDEGLDGLSATVQRLKGMALAMGEELEEQG 179 (235)
T ss_pred ---HHHhh--ccCcHH---------------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 00000 000010 11222333 4567778999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q 019253 288 EIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVL 332 (344)
Q Consensus 288 e~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl 332 (344)
.+||..++.++.+...+..+.+.|.+..+.++++++||++++++.
T Consensus 180 ~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~ 224 (235)
T KOG3202|consen 180 RLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVG 224 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 999999999999999999999999999997777775554444443
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.20 E-value=1.2e-10 Score=84.26 Aligned_cols=63 Identities=37% Similarity=0.498 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 252 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 252 ~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
...+++|++++..|+.+|.++++||.+|+.+|.+|+++||+|+++++.+..++..|..+|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 346789999999999999999999999999999999999999999999999999999999875
No 13
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.03 E-value=7.8e-09 Score=83.62 Aligned_cols=112 Identities=19% Similarity=0.236 Sum_probs=93.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 019253 49 LQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDP----TMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGIS 124 (344)
Q Consensus 49 ~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~----~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~ 124 (344)
.+.+|+..+++|..+|..|+..+..|..+|.+.+...+. ..+++.+...|+...+.|...|+.|+........ .+
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~-~~ 80 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA-SG 80 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-cC
Confidence 357999999999999999999999999999995443332 2578999999999999999999999875433221 23
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 125 SDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLK 161 (344)
Q Consensus 125 ~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k 161 (344)
+...+.+.+++..|..+|++++..|+.+|..|.+++|
T Consensus 81 ~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 81 SASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5567899999999999999999999999999987763
No 14
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.01 E-value=4.9e-09 Score=82.54 Aligned_cols=97 Identities=24% Similarity=0.260 Sum_probs=78.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCC
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDD----PTMEIQELTAVIKQDITALNSAVVDLQLVSNS-RNDGIS 124 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d----~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~-~~~~~~ 124 (344)
+++|++.+++|...|..|...+.+|..+|++.....+ ...+|+.++.+|+..+..|+..|+.|+..... .....+
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 5799999999999999999999999999999544333 23599999999999999999999999986421 111256
Q ss_pred CchhhhHHHHHHHHHHHHHHHH
Q 019253 125 SDTTSHSTTVVDDLKNRLMSAT 146 (344)
Q Consensus 125 ~~~~~~~~nvv~~L~~~l~~ls 146 (344)
+.+.+++.|++..|..+|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 7788888888888888888765
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=1.4e-05 Score=62.98 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFF 335 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~ 335 (344)
.+-++.+..+...|.-|..+--+|+..|..|..+||.+|+..+.+..........++...+. ++.+.+|+.+++.+++|
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 44557799999999999999999999999999999999999999999999999999887776 33333333333333334
Q ss_pred HHHH
Q 019253 336 LMIF 339 (344)
Q Consensus 336 ~l~~ 339 (344)
+|++
T Consensus 111 fi~~ 114 (118)
T KOG3385|consen 111 FILW 114 (118)
T ss_pred HHhh
Confidence 4433
No 16
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0056 Score=57.40 Aligned_cols=211 Identities=9% Similarity=0.138 Sum_probs=132.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019253 84 FDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH 163 (344)
Q Consensus 84 f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~ 163 (344)
.++...++-..+..|+..+..+.+.....+.... .+..+.........+-..|.....+--..+.+..+.|.++++.+
T Consensus 80 l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~--~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq 157 (297)
T KOG0810|consen 80 LESLVDEIRRRARKIKTKLKALEKENEADETQNR--SSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ 157 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999888775332 22234444444445556777777777777777777777777766
Q ss_pred hhhhhh-ccccCCCCCCCcccccCCccccccccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHH
Q 019253 164 ESRRQL-FSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQ 242 (344)
Q Consensus 164 ~~R~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (344)
-.-... -... . .. ..+.+.++...... .++.+ . +. ..
T Consensus 158 l~i~~~~~~~d-e-~i-e~~ie~g~~~~f~~-------------------~~i~~-~-~~------------------~~ 195 (297)
T KOG0810|consen 158 LFIVGGEETTD-E-EI-EEMIESGGSEVFTQ-------------------KAIQD-R-GQ------------------AK 195 (297)
T ss_pred HhhhCCCcCCh-H-HH-HHHHHCCChHHHHH-------------------HHHHH-h-hh------------------hH
Confidence 544322 1110 0 00 00000000000000 01100 0 00 00
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 243 QQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 243 ~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
+.+.-+......+..-.+.|.+|+.--.+++.|-..=+.||..=...+.+-..+|+.+..++++|. ++.+..+++.
T Consensus 196 ~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaRK~k 271 (297)
T KOG0810|consen 196 QTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKARKWK 271 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhce
Confidence 000001123456777888999999999999999999999999999999999999999999999994 5566666677
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~ 342 (344)
|+||++++|+++++++++++
T Consensus 272 ~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 272 IIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred eeeehHHHHHHHHHhhhhcc
Confidence 77777777777777776654
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.65 E-value=0.0015 Score=50.12 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 318 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~ 318 (344)
+.+.++...+.++.++..+=-..+.+-|+-|+.+++..+.-......-.+.=.+..+..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46778888888998888887788889999999999887776666655555444444433
No 18
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=97.53 E-value=0.0027 Score=49.85 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHH
Q 019253 60 IGLGIHHTSQKLAKLAKLAKRTSVFDDPT---MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVD 136 (344)
Q Consensus 60 I~~~i~~i~~~l~~L~~l~~~~~~f~d~~---~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~ 136 (344)
|...|..|...+..|.++.+.-+...|.. +.|..+...+..+++.+...|+.|.... ......+..+....
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~------~~~~~~~~~k~~~~ 74 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS------SDRSNDRQQKLQRE 74 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----------HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHH
Confidence 56788888888999988888866666665 5789999999999999999999988751 12345677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 137 DLKNRLMSATKEFKEVLTMRTENLKV 162 (344)
Q Consensus 137 ~L~~~l~~ls~~F~~~q~~y~~~~k~ 162 (344)
-|...|..+...|+.++..|.+..++
T Consensus 75 KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 75 KLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999877654
No 19
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.072 Score=46.97 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLI 333 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~ 333 (344)
-+..-.+.|+.=.+...|--+|-..|-.-+..|.+.|.+--.-.-++..|+.++.+-|..-.++.-.++|.+.+|+++++
T Consensus 129 rLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~ 208 (220)
T KOG1666|consen 129 RLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLV 208 (220)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446677777777888888888888999999999999999999999999999998888877788888766655544
Q ss_pred HHHHHHHHH
Q 019253 334 FFLMIFLFF 342 (344)
Q Consensus 334 ~~~l~~~~~ 342 (344)
+ +++++|+
T Consensus 209 ~-~il~ilY 216 (220)
T KOG1666|consen 209 L-AILLILY 216 (220)
T ss_pred H-HHHHHHH
Confidence 3 3334443
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0055 Score=48.81 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDT 300 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a 300 (344)
+.+++++..+.|+.+|+++=-.-|.|=|+-|+.+++-.+.-
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L 69 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQL 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHH
Confidence 56777788888888999988888999999999998766543
No 21
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=97.21 E-value=0.00014 Score=42.91 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=17.3
Q ss_pred CCcccchHHHHHHHHHHhhhcCC
Q 019253 8 TSFRDRTFEFQSVAERLRKTVSS 30 (344)
Q Consensus 8 ~~~~DRT~eF~~~~~~~~~~~~~ 30 (344)
++++|||.||+.||.++.++++.
T Consensus 2 ~~IqdRT~EFqqcV~s~~k~nk~ 24 (29)
T PF11416_consen 2 TSIQDRTIEFQQCVSSYKKRNKK 24 (29)
T ss_dssp -HHHB-HHHHHHHHHHHHHH---
T ss_pred cchhHhhHHHHHHHHHHHHHHhh
Confidence 47899999999999999998855
No 22
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=97.19 E-value=0.0015 Score=49.97 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHhhhcCCCCCCCCCCccchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019253 11 RDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAK 79 (344)
Q Consensus 11 ~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~ 79 (344)
.|+|.+|+++|...+...+..+. ................+|..+|.+|...|.++...|.++..-.=
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL 67 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGK--APSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYL 67 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccc--ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999977654331 00111223455677889999999999999999999998876443
No 23
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.016 Score=53.58 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=76.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 019253 244 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 323 (344)
Q Consensus 244 Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 323 (344)
++.+.++....+.+-+.+|..+..-..+|+.|-++=+.+|..=.+-|++-..||+.+..++.+|...=+++ ++..|
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~----~k~~~ 246 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKA----RKKKC 246 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchh
Confidence 33444555667888889999999999999999999999999999999999999999999999998765444 33348
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 019253 324 LMIKIFFVLIFFLMIFLFFV 343 (344)
Q Consensus 324 ~~~~i~~vl~~~~l~~~~~~ 343 (344)
+.++|++++++++++.+++.
T Consensus 247 ~ll~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 247 ILLLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 87777777666666555543
No 24
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.07 E-value=0.015 Score=53.45 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Q 019253 258 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFV 331 (344)
Q Consensus 258 r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~v 331 (344)
-.+++-.+.+++.+= ...++..+.+-..+|++....++.....+......|....+ .+++ ||.|+++++
T Consensus 168 L~~em~~La~~LK~~---s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~-~~~~-~~~~~~i~~ 236 (251)
T PF09753_consen 168 LTEEMLSLARQLKEN---SLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS-KSWG-CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-HHHHHHHHH
Confidence 345566665555544 44456799999999999999999999999999999988643 3333 555443333
No 25
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.03 Score=49.94 Aligned_cols=85 Identities=7% Similarity=0.133 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVL 332 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl 332 (344)
..+..-++.+.+|..-..++.+|..+=..+|.-=...+.....||+....++++|.+.. +|.+.+|...|.||++++++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avksa-RaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSA-RAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHH-HHHHhcceehhhhHHHHHHH
Confidence 34555566677777777777777777777777777777788899999999999999995 44555677777666665555
Q ss_pred HHHHHH
Q 019253 333 IFFLMI 338 (344)
Q Consensus 333 ~~~~l~ 338 (344)
++++++
T Consensus 264 iv~vv~ 269 (280)
T COG5074 264 IVVVVF 269 (280)
T ss_pred HHHHHh
Confidence 555553
No 26
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.066 Score=49.03 Aligned_cols=90 Identities=14% Similarity=0.300 Sum_probs=75.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q 019253 248 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 327 (344)
Q Consensus 248 ~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~ 327 (344)
..+.+..|..-++.|.++..--.||+.+-.+=+.+|.-=..-|+.+..|+..|...+.+|...= ++.++.|.|+++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq----rrt~k~~~~~Ll 265 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ----RRTKKCRFYLLL 265 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH----hhhccchhhHHH
Confidence 3455667888899999999999999999999999999999999999999999999999998654 556777877777
Q ss_pred HHHHHHHHHHHHHH
Q 019253 328 IFFVLIFFLMIFLF 341 (344)
Q Consensus 328 i~~vl~~~~l~~~~ 341 (344)
+|+|+++|+++.+.
T Consensus 266 il~vv~lfv~l~~k 279 (283)
T COG5325 266 ILLVVLLFVSLIKK 279 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666553
No 27
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.1 Score=39.80 Aligned_cols=189 Identities=12% Similarity=0.173 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHH
Q 019253 58 SKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDD 137 (344)
Q Consensus 58 ~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~ 137 (344)
..+...+.++...|.+|++..+. .++..+...|...+.++...+..+......... ...+..+.+ +..
T Consensus 6 ~~t~~~~~k~q~~l~rlE~~~~~--------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp-~~rq~~rlr---~dQ 73 (213)
T KOG3251|consen 6 QSTNRQLDKLQRGLIRLERTIKT--------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP-KSRQAARLR---VDQ 73 (213)
T ss_pred HHHHHHHHHHHHHHHHHHccccc--------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC-CcHHHHHHH---HHH
Confidence 34555666666666666543332 455666677777777777777777776554432 333444444 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCCCCCCCcCCCC
Q 019253 138 LKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPR 217 (344)
Q Consensus 138 L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 217 (344)
|...+..+-..-+...+....+.+.-.+|-........ ++. ...++
T Consensus 74 l~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~------------------------------~~~-~~~~~--- 119 (213)
T KOG3251|consen 74 LLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFT------------------------------NGA-TGTSI--- 119 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC------------------------------CCC-ccCCC---
Confidence 66666666666666665555555443333322211100 000 00000
Q ss_pred CcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 019253 218 KQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENM 297 (344)
Q Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv 297 (344)
..|. ..| =+.-+..-++.|.++-..-..+-.=+.+|+-.|-.+-.-+
T Consensus 120 -~~D~-------------------el~-------------~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki 166 (213)
T KOG3251|consen 120 -PFDE-------------------ELQ-------------ENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKI 166 (213)
T ss_pred -cchH-------------------HHH-------------hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 1134445555566666656666666778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhH
Q 019253 298 DDTMANVEGAQGALLKYLNSISSNRWLM 325 (344)
Q Consensus 298 ~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 325 (344)
-....-+.=.+.-|.--.++.+.-+|++
T Consensus 167 ~~~~ntLGlSn~ti~lIeRR~~~Dk~iF 194 (213)
T KOG3251|consen 167 LDILNTLGLSNQTIRLIERRVREDKIIF 194 (213)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhhHHHH
Confidence 7777777777776666666655555544
No 28
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.067 Score=49.56 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 313 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 313 (344)
+-...+.+|...+..|..|-.+|+..|..|.+.||+|.++++....+|+..++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455678899999999999999999999999999999999999999999999998875
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.83 E-value=1.1 Score=34.57 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH
Q 019253 281 TLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFF 330 (344)
Q Consensus 281 ~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~ 330 (344)
..+.+|-+.|..+.+.......-+..+.+-+.+..+....-||++++.|+
T Consensus 29 ~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~ 78 (92)
T PF03908_consen 29 QTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL 78 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556777777777777777888888888887777776777766654333
No 30
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=92.92 E-value=2.8 Score=37.37 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 319 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~ 319 (344)
+-.+++-.+.+++.+-.--| ..-+.+-.+.+.+-..-++....-.......++++.+...
T Consensus 155 eLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 33344444544444333333 3355566666666666677767667777777766655443
No 31
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=7.3 Score=34.76 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKR-TSVFDDPT-------MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGI 123 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~-~~~f~d~~-------~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~ 123 (344)
.|...-.+....=.++..+|....++... .+.|+++. ..-..+..+|..++.++..-++.+.... .
T Consensus 6 ~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~------~ 79 (231)
T KOG3208|consen 6 SWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA------S 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc------c
Confidence 45444444444445555666666666655 33354443 1456778888888888888877777511 1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 124 SSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRT 157 (344)
Q Consensus 124 ~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~ 157 (344)
++....+....+..-...|++-++.|+.+...|.
T Consensus 80 s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~ 113 (231)
T KOG3208|consen 80 SPANSAAVMHTLQRHREILQDYTQEFRRIRSNID 113 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222333345678888888888887753
No 32
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=1.7 Score=40.44 Aligned_cols=87 Identities=9% Similarity=0.276 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH
Q 019253 250 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIF 329 (344)
Q Consensus 250 ~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~ 329 (344)
+.+.++.+-.+.|..+..-..||+.|--+=++.|.-=.--|+.+-..++.|...+.+|- .+.++.++.+|+|++++
T Consensus 215 erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 215 EREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHHHH
Confidence 45667888888999999999999999999999998888888889999999999988885 67788888888777666
Q ss_pred HHHHHHHHHHH
Q 019253 330 FVLIFFLMIFL 340 (344)
Q Consensus 330 ~vl~~~~l~~~ 340 (344)
+++++++++++
T Consensus 291 ~ii~llvllil 301 (305)
T KOG0809|consen 291 LIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 33
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=91.11 E-value=4.7 Score=31.23 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVS 116 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~ 116 (344)
.|+...++|...|..++..+.....+..... ...++..++.+++..+..+...|..|+...
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV 62 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAV 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998887766655433 557888999999999999999999988754
No 34
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=87.86 E-value=7.8 Score=27.49 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 316 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~ 316 (344)
+.+..-...+.+.-++-.+....+..|++.|.++...+..+..++..++.-|.+-.+
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 356677777888888889999999999999999999999999999999998876544
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=87.75 E-value=19 Score=32.34 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh---HHHHHHHh---------hHHHHHHHHHHHHHHHHHHHH-H
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVS--QQG---EIAIRIDE---------NMDDTMANVEGAQGALLKYLN-S 317 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~--~Qg---e~id~Id~---------nv~~a~~~v~~g~~eL~ka~~-~ 317 (344)
+-...|.++.++|-.++.+-..=|.+-+.-+. -+. +-|++|+. ++-...+..++..++++++.+ |
T Consensus 64 ~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y 143 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKY 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888887666766654442 111 12223322 233333444455555555554 3
Q ss_pred hccCchhHHHHHHHHHHHHHHHHH
Q 019253 318 ISSNRWLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 318 ~~~~r~~~~~i~~vl~~~~l~~~~ 341 (344)
++.-.|++..|..+++||+|+.+|
T Consensus 144 ~k~~k~~~~gi~aml~Vf~LF~lv 167 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFMLFALV 167 (230)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555554444444444333
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=87.69 E-value=8.8 Score=27.92 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Q 019253 286 QGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 286 Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~l~~~ 340 (344)
..+-++.+|.+-+.....+...+.+|.+-... .+|++-.+.+.++.+++.|+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n---~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSN---TKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544333 34665556666555555444
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.26 E-value=7 Score=42.17 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 326 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 326 (344)
+-...+..+.+.+..+..-+.+++..+..+ +...+..-...+...+........++..| ||+..
T Consensus 354 qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~ 417 (806)
T PF05478_consen 354 QTSDVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVG 417 (806)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHH
Confidence 333456677777777777777777777766 66667777777777777777777777666 55543
No 38
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=87.26 E-value=11 Score=28.51 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019253 251 QDSYMQSRAEALQNVESTIHELG 273 (344)
Q Consensus 251 ~~~~~~~r~~~i~~ie~~i~eL~ 273 (344)
+...+-+|.+.+..|+..-.+|.
T Consensus 22 Ni~~ll~Rge~L~~L~~kt~~L~ 44 (89)
T PF00957_consen 22 NIDKLLERGEKLEELEDKTEELS 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHH
Confidence 33344455555555555444433
No 39
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=86.86 E-value=1.3 Score=31.24 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHhccCchhHHHHHHH
Q 019253 309 GALLKYLNSISSNRWLMIKIFFV 331 (344)
Q Consensus 309 ~eL~ka~~~~~~~r~~~~~i~~v 331 (344)
++..+..+..++.+|++++++++
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555444443
No 40
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=85.73 E-value=1.1 Score=31.53 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHHH
Q 019253 314 YLNSISSNRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 314 a~~~~~~~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
+.+.+++-+....++|+++++|+++++++
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555567788888887777666653
No 41
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.70 E-value=4.5 Score=32.41 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019253 299 DTMANVEGAQGALLKYLN 316 (344)
Q Consensus 299 ~a~~~v~~g~~eL~ka~~ 316 (344)
.+...-+++...|++-+=
T Consensus 71 ~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 71 AGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555554433
No 42
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=16 Score=33.99 Aligned_cols=76 Identities=9% Similarity=0.171 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIF 339 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~l~~ 339 (344)
..|.+|-.-..+|..|-.+=.+++.-=...+|.++-||+.|...+-+--..+ ...++--..++.|++|+++++++|
T Consensus 234 stIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~v----SSNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 234 STISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERV----SSNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHh
Confidence 3555555666677777777777777777788899999999998876655544 334553333333344444444444
No 43
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=81.78 E-value=32 Score=31.47 Aligned_cols=74 Identities=8% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHH
Q 019253 264 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISS--NRWLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 264 ~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~--~r~~~~~i~~vl~~~~l~~~ 340 (344)
+|...|..|..-.+.=+... +..|..=..-++.+...++.-...|..+..+-+. ++.+.|+.+++|++++++||
T Consensus 167 ~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 167 DLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 45555555554444433332 2333333344556666666666666666655432 33555555555555544444
No 44
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=79.37 E-value=47 Score=32.23 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 019253 263 QNVESTIHELGNI-FNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 309 (344)
Q Consensus 263 ~~ie~~i~eL~~l-f~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~ 309 (344)
..+|..+.++-++ .++|+.|=.++..|=.+++|.-.+=..+|..+.+
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalE 356 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALE 356 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444 4688888889999988888875555544444443
No 45
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=77.83 E-value=4 Score=30.80 Aligned_cols=12 Identities=8% Similarity=0.013 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhc
Q 019253 308 QGALLKYLNSIS 319 (344)
Q Consensus 308 ~~eL~ka~~~~~ 319 (344)
..+|.+-..+.+
T Consensus 19 ~DQL~qlVsrN~ 30 (84)
T PF06143_consen 19 YDQLEQLVSRNR 30 (84)
T ss_pred HHHHHHHHHhCh
Confidence 456766665443
No 46
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=7.3 Score=34.21 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRI 293 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~I 293 (344)
+.+.++...|.|+..++-+==..|.+-||-|+-+
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 4667777778888877666555666666644433
No 47
>PHA02844 putative transmembrane protein; Provisional
Probab=76.11 E-value=3.1 Score=30.43 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=4.3
Q ss_pred CchhHHHHH
Q 019253 321 NRWLMIKIF 329 (344)
Q Consensus 321 ~r~~~~~i~ 329 (344)
..|+.++|+
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 445554444
No 48
>PHA03054 IMV membrane protein; Provisional
Probab=74.78 E-value=3.6 Score=29.78 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=5.0
Q ss_pred cCchhHHHHHH
Q 019253 320 SNRWLMIKIFF 330 (344)
Q Consensus 320 ~~r~~~~~i~~ 330 (344)
+..|++++|.+
T Consensus 45 ~~~~~~~ii~l 55 (72)
T PHA03054 45 CWGWYWLIIIF 55 (72)
T ss_pred CchHHHHHHHH
Confidence 34455544443
No 49
>PHA02819 hypothetical protein; Provisional
Probab=74.32 E-value=3.6 Score=29.75 Aligned_cols=11 Identities=18% Similarity=-0.100 Sum_probs=5.0
Q ss_pred cCchhHHHHHH
Q 019253 320 SNRWLMIKIFF 330 (344)
Q Consensus 320 ~~r~~~~~i~~ 330 (344)
+..|++++|.+
T Consensus 43 ~~~~~~~ii~l 53 (71)
T PHA02819 43 SFLRYYLIIGL 53 (71)
T ss_pred ChhHHHHHHHH
Confidence 34455544443
No 50
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=71.15 E-value=5.1 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.848 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019253 326 IKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 326 ~~i~~vl~~~~l~~~~~ 342 (344)
..|+++|+|++|++++|
T Consensus 28 MtILivLVIIiLlImlf 44 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455555554
No 51
>PHA02650 hypothetical protein; Provisional
Probab=70.26 E-value=5.2 Score=29.62 Aligned_cols=9 Identities=0% Similarity=-0.514 Sum_probs=3.8
Q ss_pred cCchhHHHH
Q 019253 320 SNRWLMIKI 328 (344)
Q Consensus 320 ~~r~~~~~i 328 (344)
+..|++++|
T Consensus 46 ~~~~~~~ii 54 (81)
T PHA02650 46 WFNGQNFIF 54 (81)
T ss_pred CchHHHHHH
Confidence 334554433
No 52
>PHA02692 hypothetical protein; Provisional
Probab=70.12 E-value=5.8 Score=28.71 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=4.7
Q ss_pred cCchhHHHHH
Q 019253 320 SNRWLMIKIF 329 (344)
Q Consensus 320 ~~r~~~~~i~ 329 (344)
+..|+.++|.
T Consensus 42 ~~~~~~~ii~ 51 (70)
T PHA02692 42 GVPWTTVFLI 51 (70)
T ss_pred CcchHHHHHH
Confidence 3445554444
No 53
>PHA02975 hypothetical protein; Provisional
Probab=70.06 E-value=6.5 Score=28.32 Aligned_cols=10 Identities=30% Similarity=0.487 Sum_probs=4.5
Q ss_pred cCchhHHHHH
Q 019253 320 SNRWLMIKIF 329 (344)
Q Consensus 320 ~~r~~~~~i~ 329 (344)
+..|++++|+
T Consensus 41 ~~~~~~~ii~ 50 (69)
T PHA02975 41 SSLSIILIIF 50 (69)
T ss_pred CchHHHHHHH
Confidence 3445554444
No 54
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=67.54 E-value=7.1 Score=25.84 Aligned_cols=17 Identities=12% Similarity=0.536 Sum_probs=11.3
Q ss_pred ccCchhHHHHHHHHHHH
Q 019253 319 SSNRWLMIKIFFVLIFF 335 (344)
Q Consensus 319 ~~~r~~~~~i~~vl~~~ 335 (344)
|+-||++++++++.++|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 56788887666665544
No 55
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.07 E-value=38 Score=24.45 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 308 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 308 (344)
..|..||..+.-.-.....|+..|..|...||++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888888888999999999999888877777666543
No 56
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=64.85 E-value=43 Score=23.38 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
.++.++.-+..|-..|.....--..+++.++|+|.++|+-..++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356778888888888999989999999999999999998766553
No 57
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=63.92 E-value=66 Score=24.83 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 302 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~ 302 (344)
.|..||..-..+..=+..+-.=+..|....+..|.+++.-..
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 455555555555555555555667788888888888887433
No 58
>PF14992 TMCO5: TMCO5 family
Probab=63.34 E-value=1.2e+02 Score=28.45 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
......++.+++.....++++-.|=+..+..=.+.|.+|++..+...-+.+-
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el 176 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKEL 176 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888887777776667778888876666554443
No 59
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=60.55 E-value=14 Score=21.70 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=16.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH
Q 019253 319 SSNRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 319 ~~~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
.+.|-+|+-+-+|++-++++|+++
T Consensus 3 ~strel~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 3 RSTRELFLNFTVVLITVILMWLLV 26 (31)
T ss_dssp S-SSSSHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHH
Confidence 356667777778888788887764
No 60
>PRK14762 membrane protein; Provisional
Probab=60.28 E-value=16 Score=20.88 Aligned_cols=8 Identities=38% Similarity=1.178 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 019253 323 WLMIKIFF 330 (344)
Q Consensus 323 ~~~~~i~~ 330 (344)
|.+.+||+
T Consensus 6 w~i~iifl 13 (27)
T PRK14762 6 WAVLIIFL 13 (27)
T ss_pred HHHHHHHH
Confidence 44444443
No 61
>PHA02414 hypothetical protein
Probab=57.60 E-value=88 Score=24.25 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 316 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~ 316 (344)
.-.+++..+.||..|...|-.-+.-|.|.--.|.|.++.-...+ ..|....+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i----~aL~~~n~ 81 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI----SALAESNK 81 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH----HHHHhccc
Confidence 55678889999999999999989999999999999987655544 44544433
No 62
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=57.58 E-value=17 Score=36.80 Aligned_cols=21 Identities=5% Similarity=0.241 Sum_probs=11.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 019253 292 RIDENMDDTMANVEGAQGALL 312 (344)
Q Consensus 292 ~Id~nv~~a~~~v~~g~~eL~ 312 (344)
.+...+++|.+.++++++-|.
T Consensus 442 ~vn~sL~~A~~~L~~Sn~iL~ 462 (490)
T PF00523_consen 442 QVNNSLNNAKDLLDKSNQILD 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554
No 63
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.40 E-value=1.1e+02 Score=25.12 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhh
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAK-LAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSH 130 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~-l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~ 130 (344)
.+.+.+..+.+.|.++...|..-++ |.+|--..+++-++..+++..|+..+..++..+..+.... .-
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv------------~~ 107 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV------------DS 107 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------HH
Confidence 4556677777777777777765443 2222112455556777777888888888887777765432 22
Q ss_pred HHHHHHHHHHHHHHH
Q 019253 131 STTVVDDLKNRLMSA 145 (344)
Q Consensus 131 ~~nvv~~L~~~l~~l 145 (344)
.+.+|..|..++..+
T Consensus 108 v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 108 VQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566677666554
No 64
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=90 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 269 IHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 269 i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
+.+....-..-..++.+|++.|++|+.+++........|.+.|.--...
T Consensus 88 ~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~ 136 (273)
T KOG3065|consen 88 AEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGL 136 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4445555566777889999999999999999999999888888554443
No 65
>PHA02675 ORF104 fusion protein; Provisional
Probab=56.48 E-value=72 Score=23.99 Aligned_cols=39 Identities=8% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 267 STIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 267 ~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
.-+..|-..|..+...-..=++.|+|+|.+.+.-..++-
T Consensus 37 ~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 37 ERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445577888888888899999999999987665543
No 66
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=56.39 E-value=75 Score=23.07 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019253 297 MDDTMANVEGAQGALLK 313 (344)
Q Consensus 297 v~~a~~~v~~g~~eL~k 313 (344)
.+...+.|+..+.|+.+
T Consensus 21 Ld~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 21 LDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 33444555555666533
No 67
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=55.87 E-value=1.6e+02 Score=26.61 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHhccCc
Q 019253 263 QNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK----YLNSISSNR 322 (344)
Q Consensus 263 ~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k----a~~~~~~~r 322 (344)
.+|..++..|..-|+..+.-. | ..|+.=-.-+..+..-++....-|.. ..+|.++++
T Consensus 154 eeLaesll~LArslKtnalAf--q-salkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAF--Q-SALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHH--H-HHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 456666777776666644332 3 33332222233444444444444544 344566777
No 68
>PRK00295 hypothetical protein; Provisional
Probab=55.28 E-value=77 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 307 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 307 (344)
.|..||..+.-.-..-.+|+..|..|...|+++...+..-...+...
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888888888888999999999998888777776666553
No 69
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=54.53 E-value=15 Score=28.82 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHH
Q 019253 306 GAQGALLKYLNSISSNRWLMIKIFFVL 332 (344)
Q Consensus 306 ~g~~eL~ka~~~~~~~r~~~~~i~~vl 332 (344)
.|..-|...+.|..+.+|-=+.|++..
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GIli~f 58 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGILIAF 58 (103)
T ss_pred eHHHHHhhhccccccchhhhHHHHHHH
Confidence 567788888888777776544443333
No 70
>PRK00736 hypothetical protein; Provisional
Probab=54.00 E-value=81 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
.|..||..+...-..-.+|+..|..|...|+++...+..-...+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888889999999999888877777666654
No 71
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=53.23 E-value=66 Score=21.51 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 265 VESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 265 ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
-...+..|.....++..+..+=+.+|..=..-++....+++.+...+.++.+.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777777777777666666777777777777777666654
No 72
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=52.21 E-value=1.1e+02 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 259 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 259 ~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
.+.|..+...+.-.++--..+...+..||+.|+.|...+.....+++
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666667777777778888777766655554443
No 73
>PRK02793 phi X174 lysis protein; Provisional
Probab=51.73 E-value=92 Score=22.71 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
..|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888888999999998888777766655544
No 74
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.25 E-value=49 Score=29.19 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.2
Q ss_pred HhhHHHHHHHhhH
Q 019253 285 QQGEIAIRIDENM 297 (344)
Q Consensus 285 ~Qge~id~Id~nv 297 (344)
-=|-|+++||.=.
T Consensus 137 vk~vM~eNIekvl 149 (217)
T KOG0859|consen 137 VKGVMMENIEKVL 149 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777777653
No 75
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.86 E-value=2.6e+02 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHH-HHHHHHHH
Q 019253 284 SQQGEIAIRIDENMDDTMANVEGAQ-GALLKYLN 316 (344)
Q Consensus 284 ~~Qge~id~Id~nv~~a~~~v~~g~-~eL~ka~~ 316 (344)
++=-|-...|++++|.....|.+-- ..+.++..
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445667788888888888887765 44445544
No 76
>PRK02119 hypothetical protein; Provisional
Probab=50.30 E-value=99 Score=22.64 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 259 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 259 ~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
...|..||..+.-.-..-.+|+..|..|...||++...+..-...+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888899999999999888777766665544
No 77
>PRK04325 hypothetical protein; Provisional
Probab=50.01 E-value=1e+02 Score=22.65 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
.|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888899999999999988777776666554
No 78
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=49.71 E-value=7.1 Score=39.97 Aligned_cols=59 Identities=20% Similarity=0.408 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQD-------ITALNSAVVDLQL 114 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~-------~~~~~~~I~~L~~ 114 (344)
-..|.+....|...+..+..-|.+++......+ ..++.|+..+... |..+..+|+.|+.
T Consensus 254 A~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~------~aL~~L~~qL~nnF~AISssI~dIy~RLd~leA 319 (610)
T PF01601_consen 254 ANSFNKAIGNIQLGFTTTASALNKIQDVVNQQG------QALNQLTSQLSNNFGAISSSIQDIYNRLDQLEA 319 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Confidence 347999999999999999999999998877643 4566777665555 4445555555554
No 79
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=49.69 E-value=1.1e+02 Score=23.16 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=9.4
Q ss_pred HHHHhccCchhHHHHH
Q 019253 314 YLNSISSNRWLMIKIF 329 (344)
Q Consensus 314 a~~~~~~~r~~~~~i~ 329 (344)
+..|.+.+.|.-+.|-
T Consensus 65 ~~~~V~e~P~~svgiA 80 (94)
T PF05957_consen 65 TEDYVRENPWQSVGIA 80 (94)
T ss_pred HHHHHHHChHHHHHHH
Confidence 3445667777765443
No 80
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.98 E-value=79 Score=27.95 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019253 258 RAEALQNVESTIHELG 273 (344)
Q Consensus 258 r~~~i~~ie~~i~eL~ 273 (344)
+.......|.++.+|+
T Consensus 129 ~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 129 RDTALTQMENAIVEIH 144 (209)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3344445555554444
No 81
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=47.89 E-value=52 Score=32.51 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=11.7
Q ss_pred cCchhHHHHHHHHHHHHHHHH
Q 019253 320 SNRWLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 320 ~~r~~~~~i~~vl~~~~l~~~ 340 (344)
.-||+..+.++++.+++.+|.
T Consensus 183 ~yRw~~~~~lL~l~l~icl~~ 203 (406)
T PF04906_consen 183 YYRWLAYLGLLILDLVICLLG 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457887665555544444444
No 82
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=45.52 E-value=41 Score=22.71 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=7.9
Q ss_pred HHHHHHHhccCchh
Q 019253 311 LLKYLNSISSNRWL 324 (344)
Q Consensus 311 L~ka~~~~~~~r~~ 324 (344)
.+.+.++-+++|.-
T Consensus 5 ~~~~~~~f~~nk~a 18 (56)
T PF12911_consen 5 WKDAWRRFRRNKLA 18 (56)
T ss_pred HHHHHHHHHhCchH
Confidence 34566665666633
No 83
>PF15102 TMEM154: TMEM154 protein family
Probab=45.33 E-value=9.7 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC
Q 019253 323 WLMIKIFFVLIFFLMIFLFFVA 344 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~~~ 344 (344)
.++++|=+||++++|+++||++
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv 79 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLV 79 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHhe
Confidence 4455555566666666666653
No 84
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=44.64 E-value=1.7e+02 Score=24.08 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019253 58 SKIGLGIHHTSQKLAKLAKLAKRTSVFDDPT--MEIQELTAVIKQDITALNSAVVDLQLV 115 (344)
Q Consensus 58 ~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~--~eI~~lt~~Ik~~~~~~~~~I~~L~~~ 115 (344)
++....+..++..|.++.......+-|-+.. ..+..-...+..++..|+.-+..+...
T Consensus 37 ~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~LLd~C~~li~dl~~~ 96 (134)
T PF10303_consen 37 EESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGLLDDCFDLIEDLLER 96 (134)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888999988874556663332 344555677788899999999888754
No 85
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=44.09 E-value=58 Score=22.87 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019253 307 AQGALLKY 314 (344)
Q Consensus 307 g~~eL~ka 314 (344)
|..-|.+.
T Consensus 11 A~~FL~Rv 18 (60)
T PF06072_consen 11 ATEFLRRV 18 (60)
T ss_pred HHHHHHHH
Confidence 33444443
No 86
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=43.62 E-value=19 Score=26.36 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 019253 321 NRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 321 ~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
+.|.-++++++.++++++.++|
T Consensus 43 ~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 43 NKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 3366677777766655554443
No 87
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=2.2e+02 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 019253 262 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 296 (344)
Q Consensus 262 i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~n 296 (344)
+.++.....++..++..==..|..=|+.|+..+.-
T Consensus 136 ~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~ 170 (216)
T KOG0862|consen 136 LLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSM 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhh
Confidence 33444444444444443334444455555555433
No 88
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.54 E-value=1.9e+02 Score=27.74 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019253 61 GLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLV 115 (344)
Q Consensus 61 ~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~ 115 (344)
.++...+...-.+|+.-|+. +-.+.+++..+.......+.+..++++.|...
T Consensus 3 ~eEW~eL~~efq~Lqethr~---Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~s 54 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRS---YKQKLEELSKLQDKCSSSISHQKKRLKELKKS 54 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443 22222455555555555555555555555543
No 89
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.42 E-value=1.2e+02 Score=24.73 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 019253 259 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 296 (344)
Q Consensus 259 ~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~n 296 (344)
.+++..+...+..++.-+..+..+|..=+..|++|++|
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555555555555555555555555543
No 90
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.34 E-value=3.4e+02 Score=26.34 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=14.2
Q ss_pred hhcccccHHHHHHHHHHHHH
Q 019253 45 SAVTLQSEFNRRASKIGLGI 64 (344)
Q Consensus 45 ~~~~~~~~F~~~a~~I~~~i 64 (344)
.......+|-..++.|.-.|
T Consensus 188 es~vd~~eWklEvERV~PqL 207 (359)
T PF10498_consen 188 ESKVDPAEWKLEVERVLPQL 207 (359)
T ss_pred cccCCHHHHHHHHHHHhhhh
Confidence 44445568888888887777
No 91
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.59 E-value=4.1e+02 Score=30.13 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHH
Q 019253 54 NRRASKIGLGIHHTSQKLAKLAKLAKRTSV-FDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHST 132 (344)
Q Consensus 54 ~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~-f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~ 132 (344)
...|.+....+..+....+....|-.++.. ..+.-...+.|..+.++++.+.+..++.|+....... .+.+...-+.
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~--~~~~~L~~~~ 1730 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYL--RNEQALEDKA 1730 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHH
Confidence 344455555555555555555555554321 1122246889999999999999999998887653322 2233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019253 133 TVVDDLKNRLMSATKEFKEV 152 (344)
Q Consensus 133 nvv~~L~~~l~~ls~~F~~~ 152 (344)
..+..|.+++..+...-+..
T Consensus 1731 aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHhhhHHHHHHHHHHHHhhh
Confidence 45555555555555444433
No 92
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.45 E-value=2.8e+02 Score=27.60 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 316 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~ 316 (344)
+.+-..+|...++.|.+..+-+..|-..+.++.+-|..|+..+..+...+..-.+.+.....
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 34455788889999999999999999999999999999998888887777766666654433
No 93
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=40.35 E-value=59 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHH
Q 019253 310 ALLKYLNSISSNR--WLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 310 eL~ka~~~~~~~r--~~~~~i~~vl~~~~l~~~~~ 342 (344)
+..++.+--+++| |++|++|.++.+++.+.|.+
T Consensus 29 ~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~ 63 (239)
T COG3736 29 EEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIAI 63 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444334444 66666666665555554443
No 94
>PRK04406 hypothetical protein; Provisional
Probab=40.31 E-value=1.5e+02 Score=21.84 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
..|..||..+.-.-..-.+|+..|..|...|+++...+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888888999998888888777766555543
No 95
>PLN03160 uncharacterized protein; Provisional
Probab=39.29 E-value=18 Score=32.47 Aligned_cols=7 Identities=0% Similarity=-0.335 Sum_probs=2.7
Q ss_pred cCchhHH
Q 019253 320 SNRWLMI 326 (344)
Q Consensus 320 ~~r~~~~ 326 (344)
..+||.|
T Consensus 36 ~~~c~~~ 42 (219)
T PLN03160 36 CIKCCGC 42 (219)
T ss_pred ceEEHHH
Confidence 3334433
No 96
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=38.31 E-value=28 Score=21.76 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019253 324 LMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 324 ~~~~i~~vl~~~~l~~~~~ 342 (344)
.+..++.++++++.+.-+|
T Consensus 11 kiT~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 11 KITMVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 97
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=38.30 E-value=1.6e+02 Score=23.70 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 272 LGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 272 L~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
|.+.|..|..||..=..-++.+|..--.|...+..+..+|++..+-
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKe 47 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKE 47 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665444445568888899999999999999887653
No 98
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=38.11 E-value=2.5e+02 Score=26.03 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 019253 51 SEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSA 108 (344)
Q Consensus 51 ~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~ 108 (344)
++|.+.-..-...|..|+.-+..|..+.+.. .+|..++..+++.+..+.+.
T Consensus 217 sEWA~V~~AwkneLsEINSI~~gvEeLkKLA-------qEIss~Sn~lk~TIseLEKk 267 (353)
T PF01540_consen 217 SEWARVQEAWKNELSEINSIIKGVEELKKLA-------QEISSHSNKLKATISELEKK 267 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888887666666555542 57777777777777666643
No 99
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=37.73 E-value=79 Score=20.96 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 019253 264 NVESTIHELGNIFNQLATLVSQQGEIA 290 (344)
Q Consensus 264 ~ie~~i~eL~~lf~~l~~lV~~Qge~i 290 (344)
.|-+.+.+++.+..+|-..+.+|-.=+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888775433
No 100
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=36.99 E-value=74 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKR 80 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~ 80 (344)
.|...+.-|..++.-....+.-|.++++.
T Consensus 4 ~f~~~~~~v~~el~~t~~d~~LLe~mN~~ 32 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDYNLLENMNKA 32 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35555555666666666666656555554
No 101
>PRK14710 hypothetical protein; Provisional
Probab=36.57 E-value=43 Score=24.32 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~ 340 (344)
+++++||.+++++++..+
T Consensus 10 km~ififaiii~v~lcv~ 27 (86)
T PRK14710 10 KMIIFIFAIIIIVVLCVI 27 (86)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566667776666555543
No 102
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=36.16 E-value=53 Score=22.94 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 019253 333 IFFLMIFLFF 342 (344)
Q Consensus 333 ~~~~l~~~~~ 342 (344)
++|++.|-+|
T Consensus 17 vl~~~~Ftl~ 26 (58)
T PF13314_consen 17 VLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 103
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.48 E-value=1.5e+02 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Q 019253 304 VEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 304 v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~l~~~~ 341 (344)
|.++.+..+++.+.-.. =+..+|+|+++|++++.+
T Consensus 136 vK~~~E~y~k~~k~~~~---gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 136 VKQSHEKYQKRQKSMYK---GIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHh
Confidence 44455555555443322 244566666666666543
No 104
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.28 E-value=87 Score=28.00 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 019253 89 MEIQELTAVIKQDITALNSAVVDLQLVSNSR 119 (344)
Q Consensus 89 ~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~ 119 (344)
+|-..+-.+|+..+...+..|.+++-.+...
T Consensus 32 ~ekk~~l~~i~~~leEa~ell~qMdlEvr~l 62 (220)
T KOG1666|consen 32 SEKKQLLSEIDSKLEEANELLDQMDLEVREL 62 (220)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 4445566778888888888888887655543
No 105
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.92 E-value=2.4e+02 Score=30.50 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~ 342 (344)
.+.+++.++++.+++++++|
T Consensus 411 ~yR~~~~lil~~~llLIv~~ 430 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLC 430 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777766666555544
No 106
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=33.97 E-value=1.6e+02 Score=28.63 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHH
Q 019253 265 VESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA---NVEGAQGALLKYLNS 317 (344)
Q Consensus 265 ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~---~v~~g~~eL~ka~~~ 317 (344)
+...+.+...+|.++...+..-||.=-++++-.+.... ...+-.+.+.+|..|
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~~~~~~~~~~~i~~al~Y 166 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQQEAQQQLTKKVKKALRY 166 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443344444433333445544444444444433 233333444444444
No 107
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.54 E-value=4.3e+02 Score=25.14 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 019253 292 RIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFL 336 (344)
Q Consensus 292 ~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~~~~ 336 (344)
+++.||....+.+.+| .++....+..-.+.++++.+.+.|+
T Consensus 271 ~~teNIk~gNe~irka----~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 271 GATENIKDGNEEIRKA----KRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred cchhhhhhhHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHH
Confidence 5666666666555544 3444555544433333333333343
No 108
>PHA02650 hypothetical protein; Provisional
Probab=32.35 E-value=62 Score=24.09 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 019253 321 NRWLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 321 ~r~~~~~i~~vl~~~~l~~~~ 341 (344)
..|.-..+++++++++++.++
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l 64 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVAL 64 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 336666666666544444433
No 109
>PHA03240 envelope glycoprotein M; Provisional
Probab=32.29 E-value=45 Score=29.80 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=7.9
Q ss_pred CchhHHHHHHHHH
Q 019253 321 NRWLMIKIFFVLI 333 (344)
Q Consensus 321 ~r~~~~~i~~vl~ 333 (344)
.--..++|++||+
T Consensus 210 aaH~~WIiilIIi 222 (258)
T PHA03240 210 AAHIAWIFIAIII 222 (258)
T ss_pred cchHhHHHHHHHH
Confidence 4467776666654
No 110
>PHA02819 hypothetical protein; Provisional
Probab=32.07 E-value=81 Score=22.93 Aligned_cols=24 Identities=0% Similarity=0.121 Sum_probs=12.6
Q ss_pred hccCc-hhHHHHHHHHHHHHHHHHH
Q 019253 318 ISSNR-WLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 318 ~~~~r-~~~~~i~~vl~~~~l~~~~ 341 (344)
.++++ |.-..+++++++++++.++
T Consensus 37 ~~~~~~~~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 37 NKKTKKSFLRYYLIIGLVTIVFVII 61 (71)
T ss_pred cccccCChhHHHHHHHHHHHHHHHH
Confidence 33444 6666666666544444433
No 111
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.03 E-value=2.4e+02 Score=21.80 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019253 264 NVESTIHELGNIFNQLATLVS-QQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 318 (344)
Q Consensus 264 ~ie~~i~eL~~lf~~l~~lV~-~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~ 318 (344)
+.+..-.+|..-|..|...+. ....+++.|+..-......+..-...+......-
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667778888888886 5568899999888777777777666666655543
No 112
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.01 E-value=3.3e+02 Score=23.35 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=18.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHH
Q 019253 292 RIDENMDDTMANVEGAQGALLKYLNSISS--NRWLMIKIFFV 331 (344)
Q Consensus 292 ~Id~nv~~a~~~v~~g~~eL~ka~~~~~~--~r~~~~~i~~v 331 (344)
.++..+.+....+..-...|+...+..|+ -||++.+++++
T Consensus 124 ~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~ 165 (177)
T PF07798_consen 124 KQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGC 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555554443 34655444443
No 113
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=32.00 E-value=2e+02 Score=20.89 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.1
Q ss_pred HHHHhhHH
Q 019253 291 IRIDENMD 298 (344)
Q Consensus 291 d~Id~nv~ 298 (344)
|.||..|+
T Consensus 25 deieekve 32 (75)
T COG4064 25 DEIEEKVE 32 (75)
T ss_pred HHHHHHHH
Confidence 33443333
No 114
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.85 E-value=56 Score=26.59 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 019253 323 WLMIKIFFVLI 333 (344)
Q Consensus 323 ~~~~~i~~vl~ 333 (344)
.++.|||+|++
T Consensus 65 ~i~~Ii~gv~a 75 (122)
T PF01102_consen 65 AIIGIIFGVMA 75 (122)
T ss_dssp CHHHHHHHHHH
T ss_pred ceeehhHHHHH
Confidence 34445555544
No 115
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.76 E-value=33 Score=25.73 Aligned_cols=21 Identities=14% Similarity=-0.053 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhccCchhHH
Q 019253 306 GAQGALLKYLNSISSNRWLMI 326 (344)
Q Consensus 306 ~g~~eL~ka~~~~~~~r~~~~ 326 (344)
....+...|.++.++.|+|.+
T Consensus 48 ~~~Gd~~~A~~aS~~Ak~~~~ 68 (82)
T PF04505_consen 48 YAAGDYEGARRASRKAKKWSI 68 (82)
T ss_pred HHCCCHHHHHHHHHHhHHHHH
Confidence 344556677777666665443
No 116
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=31.54 E-value=51 Score=23.07 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=2.4
Q ss_pred HHHHHH
Q 019253 326 IKIFFV 331 (344)
Q Consensus 326 ~~i~~v 331 (344)
+++|++
T Consensus 45 ~~~~li 50 (64)
T COG4068 45 ILMFLI 50 (64)
T ss_pred HHHHHH
Confidence 334444
No 117
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.49 E-value=1.4e+02 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHH
Q 019253 276 FNQLATLVSQQGEIAIRIDENMDDTM 301 (344)
Q Consensus 276 f~~l~~lV~~Qge~id~Id~nv~~a~ 301 (344)
|-++-.....-||.--+++.-.+...
T Consensus 121 F~~~~~~~v~~gE~~G~L~~~l~~la 146 (397)
T COG1459 121 FPDLYVAMVAAGERSGNLDEVLQRLA 146 (397)
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333333344444433433333333
No 118
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=31.20 E-value=38 Score=19.95 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=8.9
Q ss_pred HhccCchhHHHHHHH
Q 019253 317 SISSNRWLMIKIFFV 331 (344)
Q Consensus 317 ~~~~~r~~~~~i~~v 331 (344)
|+++++|+...+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 456677877554443
No 119
>PHA02690 hypothetical protein; Provisional
Probab=30.29 E-value=2.3e+02 Score=21.10 Aligned_cols=15 Identities=20% Similarity=0.704 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019253 328 IFFVLIFFLMIFLFF 342 (344)
Q Consensus 328 i~~vl~~~~l~~~~~ 342 (344)
+=+++.+|.+++|+|
T Consensus 46 fDL~lTvfV~myiv~ 60 (90)
T PHA02690 46 FDLLLTVFVVMYIVF 60 (90)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555543
No 120
>PHA02849 putative transmembrane protein; Provisional
Probab=30.03 E-value=67 Score=23.82 Aligned_cols=8 Identities=13% Similarity=0.629 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019253 333 IFFLMIFL 340 (344)
Q Consensus 333 ~~~~l~~~ 340 (344)
.+.+++|+
T Consensus 26 vI~i~~fl 33 (82)
T PHA02849 26 VISFLAFM 33 (82)
T ss_pred HHHHHHHH
Confidence 33344443
No 121
>PHA03054 IMV membrane protein; Provisional
Probab=29.97 E-value=74 Score=23.14 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 019253 321 NRWLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 321 ~r~~~~~i~~vl~~~~l~~~~ 341 (344)
+.|.-..+++++++++++.++
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l 63 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLL 63 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 336666666666555444443
No 122
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=29.52 E-value=1.6e+02 Score=25.20 Aligned_cols=11 Identities=18% Similarity=-0.022 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 019253 272 LGNIFNQLATL 282 (344)
Q Consensus 272 L~~lf~~l~~l 282 (344)
|.++...|+..
T Consensus 110 L~~lG~~LG~~ 120 (170)
T TIGR02833 110 LLQFGKTLGES 120 (170)
T ss_pred HHHHHHHHCcC
Confidence 44444444443
No 123
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=29.45 E-value=1.6e+02 Score=25.18 Aligned_cols=11 Identities=18% Similarity=-0.019 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 019253 272 LGNIFNQLATL 282 (344)
Q Consensus 272 L~~lf~~l~~l 282 (344)
|.++...|+..
T Consensus 111 L~~lg~~LG~~ 121 (171)
T PRK08307 111 LLQFGKTLGQS 121 (171)
T ss_pred HHHHHHHHCcC
Confidence 34444444443
No 124
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.35 E-value=2.6e+02 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhccc-CCCCCChHHHHHHHHHHHH
Q 019253 61 GLGIHHTSQKLAKLAKLAKRT-SVFDDPTMEIQELTAVIKQ 100 (344)
Q Consensus 61 ~~~i~~i~~~l~~L~~l~~~~-~~f~d~~~eI~~lt~~Ik~ 100 (344)
...+..+...+.+|..-|... -+++.++++++.|-.+|..
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 334444444444444444331 1367777777777766643
No 125
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.12 E-value=4.4e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 019253 281 TLVSQQGEIAIRIDENMDDTMANVEGAQG 309 (344)
Q Consensus 281 ~lV~~Qge~id~Id~nv~~a~~~v~~g~~ 309 (344)
.++.+++.-+|+++.-+......+.+-+.
T Consensus 180 ~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 180 RLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666555555555554
No 126
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=28.61 E-value=3.3 Score=31.08 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=0.0
Q ss_pred cCchhHH
Q 019253 320 SNRWLMI 326 (344)
Q Consensus 320 ~~r~~~~ 326 (344)
+.||+.|
T Consensus 64 KrrwlwL 70 (81)
T PF14812_consen 64 KRRWLWL 70 (81)
T ss_dssp -------
T ss_pred cchhHHH
Confidence 3445443
No 127
>COG4640 Predicted membrane protein [Function unknown]
Probab=28.42 E-value=72 Score=31.20 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 019253 305 EGAQGALLKYLN 316 (344)
Q Consensus 305 ~~g~~eL~ka~~ 316 (344)
.+|++.+..-.+
T Consensus 30 sqan~~tn~i~~ 41 (465)
T COG4640 30 SQANKSTNEIIQ 41 (465)
T ss_pred hhhhHHHHHHHH
Confidence 345555544433
No 128
>PRK09793 methyl-accepting protein IV; Provisional
Probab=27.60 E-value=6e+02 Score=25.78 Aligned_cols=53 Identities=9% Similarity=0.220 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
.+..-...+.+|...+.++.+...+++..+.+|...++.|..+++....-++.
T Consensus 430 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~ 482 (533)
T PRK09793 430 LVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456888888999999999999999999999998888777665444433
No 129
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=27.58 E-value=5.9e+02 Score=26.00 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
.+..-.+.+.+|...+.++.+++.+++.-+.+|...++.|..+++....-++.
T Consensus 434 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 434 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567889999999999999999999999999999998887665544333
No 130
>PHA03332 membrane glycoprotein; Provisional
Probab=27.31 E-value=6.6e+02 Score=28.19 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019253 90 EIQELTAVIKQDITALNSAVVDLQLV 115 (344)
Q Consensus 90 eI~~lt~~Ik~~~~~~~~~I~~L~~~ 115 (344)
.|+.|+.++...|-.....|+.|...
T Consensus 938 RIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 938 RVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776666654
No 131
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.29 E-value=2.5e+02 Score=20.56 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLV 283 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV 283 (344)
+..++++...--.++|..|..-.
T Consensus 5 ~~l~L~R~~~~~~~~Y~~Ll~r~ 27 (82)
T PF13807_consen 5 EYLRLQRDVEIKRELYETLLQRY 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666667777665443
No 132
>PRK00846 hypothetical protein; Provisional
Probab=27.04 E-value=2.7e+02 Score=20.72 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 308 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 308 (344)
..|..||..+.-.-..-.+|+..|..|...|+++...+..-.+.++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777778888888888899999888887777666665543
No 133
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=26.97 E-value=73 Score=23.19 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q 019253 323 WLMIKIFFVLI 333 (344)
Q Consensus 323 ~~~~~i~~vl~ 333 (344)
.+.+++|+|++
T Consensus 18 fLF~ilfIvlm 28 (72)
T PF13198_consen 18 FLFFILFIVLM 28 (72)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 134
>PHA02844 putative transmembrane protein; Provisional
Probab=26.96 E-value=89 Score=22.97 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~ 341 (344)
+.-..+++++++++++.++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATF 63 (75)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 5556666655444443333
No 135
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=26.79 E-value=6.6e+02 Score=27.13 Aligned_cols=26 Identities=12% Similarity=-0.157 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHH
Q 019253 301 MANVEGAQGALLKYLNSISSNRWLMI 326 (344)
Q Consensus 301 ~~~v~~g~~eL~ka~~~~~~~r~~~~ 326 (344)
......+......+.......-++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (914)
T PRK11466 312 ELRNQHGLAHLEKASARGQYSLLLLG 337 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444344444443
No 136
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=26.74 E-value=4e+02 Score=22.71 Aligned_cols=59 Identities=14% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 312 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 312 (344)
.+.+-.+.+..|...+.++.....++..-+.+|...+..|...+.....-++.....+.
T Consensus 129 ~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 187 (213)
T PF00015_consen 129 SVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSE 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888888888888888888888888888888888776555555544444333
No 137
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=26.44 E-value=82 Score=33.68 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=14.2
Q ss_pred HHHHH---hccCchhHHHHHHHHHHHHHHHHHH
Q 019253 313 KYLNS---ISSNRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 313 ka~~~---~~~~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
|+.-| ..+.|-+++++|+++++.++++..|
T Consensus 48 kY~~Y~~CATSTRim~Wilf~cvll~Iv~iscf 80 (981)
T PF03408_consen 48 KYLCYLCCATSTRIMAWILFVCVLLSIVLISCF 80 (981)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445 3467755554444444333333333
No 138
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=26.39 E-value=3.6e+02 Score=26.82 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=2.6
Q ss_pred CchhHH
Q 019253 321 NRWLMI 326 (344)
Q Consensus 321 ~r~~~~ 326 (344)
-||+..
T Consensus 207 ~Rw~~~ 212 (418)
T cd07912 207 YRWLAY 212 (418)
T ss_pred HHHHHH
Confidence 345443
No 139
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.36 E-value=2.2e+02 Score=27.82 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhH
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHS 131 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~ 131 (344)
+.+...+.+...|=.|-..|..|..+|..-.-|...-..++.....|...++..+..|..++....... ...
T Consensus 302 ~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~--------~~i 373 (388)
T PF04912_consen 302 EILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENM--------ETI 373 (388)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q ss_pred HHHHHHHHHHHHHH
Q 019253 132 TTVVDDLKNRLMSA 145 (344)
Q Consensus 132 ~nvv~~L~~~l~~l 145 (344)
..-+..|..|+..|
T Consensus 374 ~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 374 EKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHhcc
No 140
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=26.26 E-value=84 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=14.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 019253 320 SNRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 320 ~~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
+.|...+++|=++++++|+|+.|
T Consensus 27 ~~kY~~Iv~FEi~va~~L~~~FF 49 (128)
T PHA02689 27 AESYLAIAVLELLLALALALVFF 49 (128)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34555556676766777776654
No 141
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=26.15 E-value=3.1e+02 Score=25.87 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019253 273 GNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 316 (344)
Q Consensus 273 ~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~ 316 (344)
+++|..+..-|..-.+-|+.|..-++.+...|++-.. -+||.+
T Consensus 35 ~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g-s~kAi~ 77 (297)
T PF11945_consen 35 NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG-SKKAIT 77 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccEE
Confidence 4567888888888888888888888888887775433 344444
No 142
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.15 E-value=2.8e+02 Score=20.62 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 019253 301 MANVEGAQGALL 312 (344)
Q Consensus 301 ~~~v~~g~~eL~ 312 (344)
.+.|+..+.|+-
T Consensus 28 EeKVEftn~Ei~ 39 (77)
T PRK01026 28 EEKVEFTNAEIF 39 (77)
T ss_pred HHHHHHHHHHHH
Confidence 344445555553
No 143
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.76 E-value=2.3e+02 Score=19.61 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019253 257 SRAEALQNVESTIHELGNIFN 277 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~ 277 (344)
+-.+++..|+.++.+|-.||.
T Consensus 25 ~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 25 EISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555554
No 144
>PRK10404 hypothetical protein; Provisional
Probab=25.57 E-value=3.3e+02 Score=21.27 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHH--------HHHHHHHHHHHhccCchhHHHHHHH
Q 019253 291 IRIDENMDDTMANVEG--------AQGALLKYLNSISSNRWLMIKIFFV 331 (344)
Q Consensus 291 d~Id~nv~~a~~~v~~--------g~~eL~ka~~~~~~~r~~~~~i~~v 331 (344)
++++..+..+...+.. +..-...+..|.+.+.|--+.|-+.
T Consensus 41 ~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaag 89 (101)
T PRK10404 41 ARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAA 89 (101)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4555555555543333 4444445567788899987665443
No 145
>PRK10132 hypothetical protein; Provisional
Probab=25.36 E-value=3.4e+02 Score=21.45 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=23.1
Q ss_pred HHHHhhHHHHHHHHH-------HHHHHHHHHHHHhccCchhHHHHHHH
Q 019253 291 IRIDENMDDTMANVE-------GAQGALLKYLNSISSNRWLMIKIFFV 331 (344)
Q Consensus 291 d~Id~nv~~a~~~v~-------~g~~eL~ka~~~~~~~r~~~~~i~~v 331 (344)
++++.....+..... .+..-...+..|...+.|.-+.|-..
T Consensus 48 ~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaag 95 (108)
T PRK10132 48 RKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAA 95 (108)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 445555555443333 33444445566778899988766544
No 146
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.33 E-value=2.1e+02 Score=24.34 Aligned_cols=8 Identities=25% Similarity=0.131 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 019253 272 LGNIFNQL 279 (344)
Q Consensus 272 L~~lf~~l 279 (344)
|.++...|
T Consensus 110 L~~lg~~L 117 (170)
T PF09548_consen 110 LLELGKSL 117 (170)
T ss_pred HHHHHHHH
Confidence 33334433
No 147
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=25.31 E-value=2.2e+02 Score=19.16 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 258 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 258 r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
-...+..+..-..+++.+..+=+.++..=..-+|.++.++..+..++.
T Consensus 17 l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~ 64 (66)
T smart00397 17 LEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444445555555555554443
No 148
>PHA03046 Hypothetical protein; Provisional
Probab=25.29 E-value=3.9e+02 Score=22.00 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 019253 252 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANV 304 (344)
Q Consensus 252 ~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v 304 (344)
++++..-.-+++.+---+.-|..+|+.....-..=+..|+|+|.++++...++
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555678888888888999999988888899999999999998866554
No 149
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.20 E-value=2.7e+02 Score=20.21 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 019253 300 TMANVEGAQGALL 312 (344)
Q Consensus 300 a~~~v~~g~~eL~ 312 (344)
..+.|+..+.|+.
T Consensus 24 iEeKVEf~~~E~~ 36 (70)
T TIGR01149 24 IEEKVEFVNGEVA 36 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555553
No 150
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=24.95 E-value=71 Score=24.40 Aligned_cols=8 Identities=25% Similarity=-0.022 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 019253 311 LLKYLNSI 318 (344)
Q Consensus 311 L~ka~~~~ 318 (344)
++||...+
T Consensus 5 ~kK~K~k~ 12 (96)
T PF13800_consen 5 LKKAKRKS 12 (96)
T ss_pred HHHHHHHH
Confidence 44555443
No 151
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=24.91 E-value=7.9e+02 Score=25.44 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCCcccchHHHHHHHHHHhhhcCCCCCCCCCCccchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019253 7 QTSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKR 80 (344)
Q Consensus 7 ~~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~ 80 (344)
..++.....+|.+..+.+.... ........+...++.+...|..+...|.+|......
T Consensus 106 ~~sl~~~L~~ff~s~q~la~~P----------------~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~ 163 (552)
T COG1256 106 ESSLSTLLNDFFNSLQELASNP----------------SDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINA 163 (552)
T ss_pred cccHHHHHHHHHHHHHHHHhCc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567778888888888887322 111233578899999999999999988888765554
No 152
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=24.86 E-value=1.2e+02 Score=18.39 Aligned_cols=14 Identities=14% Similarity=0.365 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 019253 329 FFVLIFFLMIFLFF 342 (344)
Q Consensus 329 ~~vl~~~~l~~~~~ 342 (344)
+++..+.+++|.+|
T Consensus 9 ll~~tlgiiFFAIf 22 (31)
T PRK11875 9 ILTLALVTLFFAIA 22 (31)
T ss_pred HHHHHHHHHHHhhh
Confidence 33333444444444
No 153
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=24.63 E-value=7.2e+02 Score=25.19 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
+..-.+.+.+|...+.++.+.+.+++..+.+|...++.|..++++...-++
T Consensus 433 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 433 VESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678888899999999999999999999999988888776665554
No 154
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=24.40 E-value=5.4e+02 Score=23.37 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFL 340 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~ 340 (344)
+|.+++++.+|++.|.|+
T Consensus 200 ~Wv~l~iG~iIi~tLtYv 217 (232)
T PF09577_consen 200 IWVMLSIGGIIIATLTYV 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556666666666665
No 155
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=24.04 E-value=2.9e+02 Score=27.50 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
+-..+..+.+.++..-..++.|..+...|+..|...|.+.|.+|......|.-
T Consensus 49 leetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~i 101 (483)
T KOG2546|consen 49 LEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDI 101 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhee
Confidence 33567778888888889999999999999999999999999999988777653
No 156
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=23.94 E-value=2.7e+02 Score=28.87 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIA 290 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~i 290 (344)
.+-+.+++.++.+|..|++=...|+.+|.+=.--|
T Consensus 431 ~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 431 NALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 34445566666666666665555555555443333
No 157
>PHA03164 hypothetical protein; Provisional
Probab=23.69 E-value=1.2e+02 Score=22.37 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 019253 331 VLIFFLMIFLFFV 343 (344)
Q Consensus 331 vl~~~~l~~~~~~ 343 (344)
.|+|..|+|++|+
T Consensus 65 gLaIamILfiifv 77 (88)
T PHA03164 65 GLAIAMILFIIFV 77 (88)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444555543
No 158
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.61 E-value=2.5e+02 Score=21.30 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019253 297 MDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 297 v~~a~~~v~~g~~eL~ka~~~ 317 (344)
.......+..=-++|..-.+.
T Consensus 45 ~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 45 LNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHhhccHHHHHHHHHh
Confidence 333334444444555444443
No 159
>PHA02967 hypothetical protein; Provisional
Probab=23.57 E-value=96 Score=25.23 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 019253 321 NRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 321 ~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
.+...+++|=++++++++|+.|
T Consensus 25 ~kY~~Iv~FEi~val~L~~~FF 46 (128)
T PHA02967 25 NKYFYILVFEVIVALIIINFFF 46 (128)
T ss_pred ccchhHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666654
No 160
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=23.37 E-value=7.6e+02 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 89 MEIQELTAVIKQDITALNSAVVDL 112 (344)
Q Consensus 89 ~eI~~lt~~Ik~~~~~~~~~I~~L 112 (344)
.+.+.....+......++..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~l 96 (968)
T TIGR02956 73 RQRQAIGKKLTLQSETLLHSLKAL 96 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 161
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.28 E-value=91 Score=26.12 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 019253 334 FFLMIFL 340 (344)
Q Consensus 334 ~~~l~~~ 340 (344)
+++++++
T Consensus 132 i~~giy~ 138 (145)
T PF10661_consen 132 ICGGIYV 138 (145)
T ss_pred HHHHHHH
Confidence 3344444
No 162
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=23.21 E-value=1.5e+02 Score=20.16 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019253 323 WLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~ 342 (344)
|+++ +|.+.|+|++++++.
T Consensus 23 ww~~-~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 23 WWLW-LFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 5554 555566676666543
No 163
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.01 E-value=1e+02 Score=25.89 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=13.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhC
Q 019253 320 SNRWLMIKIFFVLIFFLMIFLFFVA 344 (344)
Q Consensus 320 ~~r~~~~~i~~vl~~~~l~~~~~~~ 344 (344)
+..|.++++++..+|++|++++++|
T Consensus 115 ~~~~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 115 KPISPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444444566677776653
No 164
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=23.00 E-value=2.7e+02 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=7.9
Q ss_pred HHHHhhHHHHHHH
Q 019253 282 LVSQQGEIAIRID 294 (344)
Q Consensus 282 lV~~Qge~id~Id 294 (344)
+=.+|..|+++++
T Consensus 151 i~~~~~~Ll~kL~ 163 (336)
T PF05055_consen 151 IHDQQSSLLEKLD 163 (336)
T ss_pred HHHHHHHHHHHHH
Confidence 3346666776666
No 165
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=22.97 E-value=49 Score=27.87 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHh
Q 019253 307 AQGALLKYLNSI 318 (344)
Q Consensus 307 g~~eL~ka~~~~ 318 (344)
|..-|.|-.+.+
T Consensus 115 GyDsLLKkKEae 126 (159)
T PF06789_consen 115 GYDSLLKKKEAE 126 (159)
T ss_pred chHHHHHHHHHH
Confidence 555565554443
No 166
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.84 E-value=1.6e+02 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CchhHHH
Q 019253 300 TMANVEGAQGALLKYLNSISS-NRWLMIK 327 (344)
Q Consensus 300 a~~~v~~g~~eL~ka~~~~~~-~r~~~~~ 327 (344)
-.-.++++.++|++-.+.... ++|+.++
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 344556778888777766533 4454443
No 167
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=22.63 E-value=75 Score=21.63 Aligned_cols=16 Identities=38% Similarity=0.908 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019253 326 IKIFFVLIFFLMIFLF 341 (344)
Q Consensus 326 ~~i~~vl~~~~l~~~~ 341 (344)
++++-++|+|+.+|++
T Consensus 5 lKFvY~mIiflslflv 20 (54)
T PF07127_consen 5 LKFVYAMIIFLSLFLV 20 (54)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3444555555555554
No 168
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=22.37 E-value=3.2e+02 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 019253 275 IFNQLATLVSQQGEIAIRIDENMDDTMANV 304 (344)
Q Consensus 275 lf~~l~~lV~~Qge~id~Id~nv~~a~~~v 304 (344)
+|.++..-+..-||.=-++++.......+.
T Consensus 123 ~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~ 152 (399)
T TIGR02120 123 DFPPLYRALVAAGEASGALDAVLERLADYL 152 (399)
T ss_pred cCCHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 344443333333444444444444443333
No 169
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.33 E-value=3.7e+02 Score=20.67 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019253 136 DDLKNRLMSATKEFKEVLTMRTENLKVH 163 (344)
Q Consensus 136 ~~L~~~l~~ls~~F~~~q~~y~~~~k~~ 163 (344)
.........|...|+.+...|...-+..
T Consensus 85 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 85 RTRKAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677888888888876654443
No 170
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.96 E-value=4.4e+02 Score=21.40 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhcc
Q 019253 308 QGALLKYLNSISS 320 (344)
Q Consensus 308 ~~eL~ka~~~~~~ 320 (344)
..|+..-.++-+-
T Consensus 49 ~~el~~L~rR~~l 61 (130)
T PF11026_consen 49 RRELRILRRRARL 61 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 171
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=21.83 E-value=2.1e+02 Score=20.81 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTS 82 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~ 82 (344)
.++|...+.-|++.|..|..++-.|.+..++..
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsKKn~ 54 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSKKNT 54 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence 468999999999999999999999998888743
No 172
>CHL00031 psbT photosystem II protein T
Probab=21.64 E-value=1.2e+02 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019253 329 FFVLIFFLMIFLFF 342 (344)
Q Consensus 329 ~~vl~~~~l~~~~~ 342 (344)
+++..+.+++|.+|
T Consensus 9 ll~~tlgilFFAI~ 22 (33)
T CHL00031 9 LLVSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHHHhhe
Confidence 33333444445444
No 173
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=1.5e+02 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Q 019253 295 ENMDDTMANVEGAQGALLKYLNSI-SSNRWLMIKIFFVLIF 334 (344)
Q Consensus 295 ~nv~~a~~~v~~g~~eL~ka~~~~-~~~r~~~~~i~~vl~~ 334 (344)
-.++.=...++.|.++|.+-.+.. +-+||+..+..++.+.
T Consensus 97 ~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~ 137 (250)
T COG2966 97 RAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAA 137 (250)
T ss_pred HHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHH
Confidence 334444455667777777766443 3466777655554443
No 174
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.92 E-value=1.8e+02 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.027 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHH
Q 019253 306 GAQGALLKYLNSISSNRWLMIKIFFV 331 (344)
Q Consensus 306 ~g~~eL~ka~~~~~~~r~~~~~i~~v 331 (344)
+-.+-|.|-.++++..+.++..+|++
T Consensus 28 ~C~eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 28 ECGEILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666777777444444444
No 175
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.84 E-value=2.8e+02 Score=18.82 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 309 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~ 309 (344)
+..-+..+..|..-..+|+.+-.+=+.+|..=..-+++...++..+...+.++.+
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566655555666666666666666666666666666544
No 176
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.76 E-value=3.6e+02 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.478 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 019253 323 WLMIKIFFVLIFFLMIFLFFV 343 (344)
Q Consensus 323 ~~~~~i~~vl~~~~l~~~~~~ 343 (344)
|++..|+.+|+.|-.+|-+++
T Consensus 53 l~l~ail~lL~a~Ya~fyl~l 73 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555443
No 177
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.75 E-value=4e+02 Score=20.50 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 019253 258 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 302 (344)
Q Consensus 258 r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~ 302 (344)
-.+.+..|...+.+|.+.+..|...+ ..||.||..|..-..
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l----~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYL----QQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 33456677777888888887766655 468888888765443
No 178
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.53 E-value=2.6e+02 Score=19.24 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHH
Q 019253 303 NVEGAQGALLKYLNSISS-NRWLMIKIFFVLIFFLMIFLF 341 (344)
Q Consensus 303 ~v~~g~~eL~ka~~~~~~-~r~~~~~i~~vl~~~~l~~~~ 341 (344)
-+-.|--++-.+.+++++ +.|...++.+++.+++-++++
T Consensus 32 ~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~~l 71 (72)
T PF03729_consen 32 LIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGIILL 71 (72)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 345677788777774333 234444455555444444443
No 179
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=20.33 E-value=3.7e+02 Score=25.70 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019253 60 IGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQL 114 (344)
Q Consensus 60 I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~ 114 (344)
..+-|.++..++++|..+..... -|-+.||..|...+....+.+...+...+.
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~ 63 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKND--KVINNKLKSFQRKLRILKKEIFYSLTPLQR 63 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhcccc--cCHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 44567778888888887765432 233578888888888887888777755544
No 180
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=20.33 E-value=92 Score=23.39 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=14.3
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHH
Q 019253 314 YLNSISSNRWLMIKIFFVLIFFLMIF 339 (344)
Q Consensus 314 a~~~~~~~r~~~~~i~~vl~~~~l~~ 339 (344)
+..|=++++.++.+++++.+++...+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454556666666666555554444
No 181
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.09 E-value=1.2e+02 Score=27.05 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=5.5
Q ss_pred HHHHHHHHHh
Q 019253 334 FFLMIFLFFV 343 (344)
Q Consensus 334 ~~~l~~~~~~ 343 (344)
+|+|.-+|||
T Consensus 140 LfLICT~LfL 149 (227)
T PF05399_consen 140 LFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHH
Confidence 3455555665
No 182
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.00 E-value=1.6e+02 Score=18.82 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019253 326 IKIFFVLIFFLMIFL 340 (344)
Q Consensus 326 ~~i~~vl~~~~l~~~ 340 (344)
-+|.+|+..++++++
T Consensus 7 aIIv~V~vg~~iiii 21 (38)
T PF02439_consen 7 AIIVAVVVGMAIIII 21 (38)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344455444444443
Done!