Query 019253
Match_columns 344
No_of_seqs 198 out of 1195
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 13:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 100.0 2.4E-32 8.3E-37 253.5 9.1 230 45-322 38-279 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 100.0 5.4E-32 1.9E-36 249.2 11.3 237 45-326 25-266 (267)
3 3hd7_B Syntaxin-1A; membrane p 99.9 1.4E-23 4.8E-28 166.8 13.6 75 251-325 12-86 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 9.2E-22 3.1E-26 146.7 10.5 74 253-326 3-76 (77)
5 3c98_B Syntaxin-1A; protein co 99.9 4.9E-22 1.7E-26 182.9 7.2 263 8-326 11-278 (279)
6 2nps_B Syntaxin 13, vesicle-as 99.8 9.6E-21 3.3E-25 138.9 10.0 70 256-325 2-71 (71)
7 1fio_A SSO1 protein; four heli 99.8 7.5E-20 2.6E-24 160.8 15.4 187 50-287 4-196 (196)
8 1sfc_B Protein (syntaxin 1A), 99.8 9.4E-20 3.2E-24 137.7 10.8 72 251-322 12-83 (83)
9 3b5n_B Protein SSO1; snare com 99.8 1.7E-19 5.7E-24 131.4 11.1 67 253-319 3-69 (69)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 2.8E-18 9.4E-23 124.7 9.6 64 252-315 4-67 (68)
11 1gl2_B Syntaxin 7; membrane pr 99.8 1.7E-18 5.8E-23 124.5 8.4 63 254-316 3-65 (65)
12 1s94_A S-syntaxin; three helix 99.5 2E-13 6.7E-18 118.2 9.6 157 9-175 6-168 (180)
13 1ez3_A Syntaxin-1A; three heli 99.3 1.3E-11 4.4E-16 100.5 12.6 116 48-163 5-125 (127)
14 2nps_D Syntaxin-6; vesicle fus 98.1 9E-06 3.1E-10 60.6 8.1 68 255-322 14-81 (82)
15 2dnx_A Syntaxin-12; snare, HAB 98.1 9.4E-05 3.2E-09 59.9 14.2 109 50-162 9-120 (130)
16 1gl2_D Syntaxin 8, vesicle tra 97.8 7.9E-05 2.7E-09 52.8 7.5 59 256-314 5-63 (65)
17 1n7s_D SNAP-25A; neuronal snar 97.8 0.00019 6.4E-09 51.0 9.5 58 257-314 7-64 (66)
18 3hd7_B Syntaxin-1A; membrane p 97.8 0.00045 1.5E-08 54.1 12.2 84 248-335 16-99 (109)
19 1sfc_D Protein (SNAP-25B), pro 97.7 0.00027 9.2E-09 53.1 10.0 60 256-315 25-84 (87)
20 1l4a_D S-SNAP25 fusion protein 97.5 0.00048 1.6E-08 51.6 8.0 58 257-314 27-84 (87)
21 3b5n_D Protein transport prote 97.4 0.002 6.7E-08 45.3 9.6 57 257-313 7-63 (64)
22 3hd7_A Vesicle-associated memb 97.2 0.0059 2E-07 46.1 11.8 44 260-303 5-48 (91)
23 1mqs_B SED5P, integral membran 96.7 0.00027 9.1E-09 46.7 0.2 24 7-30 5-28 (50)
24 1nhl_A Synaptosomal-associated 96.1 0.04 1.4E-06 37.2 8.4 45 268-312 8-52 (54)
25 1n7s_C SNAP-25A; neuronal snar 95.6 0.23 8E-06 36.1 11.2 56 258-313 21-76 (79)
26 2kog_A Vesicle-associated memb 94.8 0.0016 5.5E-08 51.7 -3.0 39 261-299 34-72 (119)
27 3b5n_C Protein transport prote 94.6 0.55 1.9E-05 33.3 10.4 39 279-317 31-69 (70)
28 1l4a_C S-SNAP25 fusion protein 92.8 0.44 1.5E-05 35.0 7.3 51 261-311 28-78 (83)
29 1hs7_A Syntaxin VAM3; UP-and-D 91.7 2.7 9.4E-05 31.6 10.7 80 62-162 10-93 (97)
30 1gl2_C VTI1B, vesicle transpor 90.6 2.4 8.2E-05 29.4 8.9 52 261-312 10-61 (65)
31 2nps_C Vesicle transport throu 86.6 7.3 0.00025 28.1 10.4 63 255-317 14-76 (81)
32 2c5k_T Syntaxin TLG1, T-snare 85.4 9.7 0.00033 28.4 12.3 87 51-150 6-92 (95)
33 4dnd_A Syntaxin-10, SYN10; str 84.5 13 0.00046 29.3 11.1 96 50-147 26-126 (130)
34 1jth_B Syntaxin 1A; coiled-coi 84.4 9 0.00031 27.2 9.6 61 252-312 9-69 (77)
35 3hd7_A Vesicle-associated memb 76.3 21 0.0007 26.3 11.5 23 251-273 24-46 (91)
36 1sfc_A VAMP 2, protein (synapt 66.8 34 0.0012 25.4 8.2 42 260-301 30-71 (96)
37 2dnx_A Syntaxin-12; snare, HAB 64.0 50 0.0017 25.8 10.4 28 141-168 92-119 (130)
38 2nps_B Syntaxin 13, vesicle-as 61.9 37 0.0013 23.5 8.6 61 254-314 7-67 (71)
39 1deq_A Fibrinogen (alpha chain 58.0 69 0.0024 29.9 10.1 88 56-148 61-156 (390)
40 2kog_A Vesicle-associated memb 56.9 10 0.00034 29.6 3.8 8 257-264 58-65 (119)
41 1jdm_A Sarcolipin; helix, memb 51.3 16 0.00056 20.8 2.9 23 320-342 4-26 (31)
42 3efg_A Protein SLYX homolog; x 48.2 58 0.002 23.2 6.4 48 260-307 14-61 (78)
43 2nps_A VAMP-4, vesicle-associa 43.1 57 0.0019 22.8 5.7 38 262-299 10-47 (74)
44 1gl2_B Syntaxin 7; membrane pr 41.9 78 0.0027 21.4 8.6 55 254-308 10-64 (65)
45 3b5n_B Protein SSO1; snare com 38.5 93 0.0032 21.2 10.2 57 253-309 10-66 (69)
46 3swy_A Cyclic nucleotide-gated 38.4 74 0.0025 20.3 5.0 27 133-159 12-38 (46)
47 1sfc_B Protein (syntaxin 1A), 38.0 1.1E+02 0.0036 21.8 10.3 61 250-310 18-78 (83)
48 2bez_C E2 glycoprotein; coiled 34.6 1.2E+02 0.0041 21.4 7.8 56 51-112 12-67 (77)
49 2l3l_A Tubulin-specific chaper 33.7 73 0.0025 24.3 5.3 48 101-148 59-106 (111)
50 3n27_A Fusion glycoprotein F0, 32.1 1.4E+02 0.0047 21.3 6.0 61 255-317 15-75 (80)
51 2pjx_C Syntaxin-4; membrane tr 30.4 14 0.00046 20.4 0.4 9 10-18 1-9 (29)
52 1deq_A Fibrinogen (alpha chain 30.2 2.5E+02 0.0085 26.2 9.1 72 65-143 63-134 (390)
53 1l4a_A Synaptobrevin; snare, s 29.3 1.3E+02 0.0045 21.2 5.8 39 261-299 16-54 (80)
54 1n7s_B Syntaxin 1A; neuronal s 29.1 1.4E+02 0.0046 20.3 9.4 56 253-308 12-67 (68)
55 3zx6_A HAMP, methyl-accepting 28.8 3.2E+02 0.011 24.6 10.5 53 254-306 221-273 (341)
56 3ghg_A Fibrinogen alpha chain; 28.7 2.1E+02 0.0073 27.8 8.6 63 54-116 56-126 (562)
57 2l5g_B Putative uncharacterize 28.7 1.1E+02 0.0037 19.0 4.6 28 50-77 4-31 (42)
58 1qu7_A Methyl-accepting chemot 27.6 2.7E+02 0.0091 23.7 8.6 51 256-306 143-193 (227)
59 3swf_A CGMP-gated cation chann 27.2 1.6E+02 0.0056 20.6 5.7 28 133-160 14-41 (74)
60 3p8c_F ABL interactor 2; actin 26.1 2.6E+02 0.009 22.6 10.2 50 256-305 50-99 (159)
61 1urq_A M-tomosyn isoform; tran 26.0 1.5E+02 0.0053 19.9 7.3 38 262-299 6-43 (63)
62 3arc_T Photosystem II reaction 25.8 82 0.0028 18.4 3.2 13 330-342 10-22 (32)
63 1m1j_A Fibrinogen alpha subuni 24.6 4.7E+02 0.016 25.0 11.3 64 52-115 55-126 (491)
64 2jwa_A Receptor tyrosine-prote 24.5 80 0.0027 19.9 3.3 11 326-336 16-26 (44)
65 1ez3_A Syntaxin-1A; three heli 23.6 2.3E+02 0.008 21.2 10.0 106 58-168 8-123 (127)
66 2beq_A E2 glycoprotein; viral 22.7 1.4E+02 0.0047 18.2 4.4 32 263-294 2-33 (38)
67 2jpw_A Troponin I, cardiac mus 22.4 75 0.0026 18.2 2.6 19 2-20 11-30 (32)
68 1n7s_A Vesicle-associated memb 22.1 1.8E+02 0.0061 19.3 9.9 42 260-301 4-45 (63)
69 1vcs_A Vesicle transport throu 21.9 2.4E+02 0.0083 20.7 9.6 27 92-118 37-63 (102)
70 1hs7_A Syntaxin VAM3; UP-and-D 21.9 2.4E+02 0.0084 20.8 10.5 26 144-169 68-93 (97)
71 2ww9_B Protein transport prote 20.6 39 0.0013 24.3 1.4 28 288-315 13-40 (80)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.97 E-value=2.4e-32 Score=253.52 Aligned_cols=230 Identities=15% Similarity=0.220 Sum_probs=156.5
Q ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019253 45 SAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRT---SVFDD---PTMEIQELTAVIKQDITALNSAVVDLQLVSNS 118 (344)
Q Consensus 45 ~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~---~~f~d---~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~ 118 (344)
.....+++|+..+++|...|..|..+|.+|.++|++. +.|++ ...+|+.++..|++.++.|+..|+.|+...+.
T Consensus 38 ~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~ 117 (279)
T 2xhe_B 38 QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR 117 (279)
T ss_dssp --CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999874 33554 23699999999999999999999999976543
Q ss_pred cC-----CCCCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccc
Q 019253 119 RN-----DGISSD-TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRS 192 (344)
Q Consensus 119 ~~-----~~~~~~-~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (344)
.. +..++. +.+++++++..|..+|++++..|+++|..|.+++|.+..|...+.++..++. . +.
T Consensus 118 ~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~e--e------~~--- 186 (279)
T 2xhe_B 118 AQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDD--A------IQ--- 186 (279)
T ss_dssp THHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSST--T------HH---
T ss_pred hhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH--H------HH---
Confidence 21 112233 5699999999999999999999999999999999988776543332211100 0 00
Q ss_pred cccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 019253 193 AAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHEL 272 (344)
Q Consensus 193 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL 272 (344)
.+++. ++.. .+ ++.+.+.......++++|+++|.+|+++|.||
T Consensus 187 --------------------~~~e~--g~~~--------------~f-~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el 229 (279)
T 2xhe_B 187 --------------------KVIEH--GTEG--------------IF-SGMRLEGAEAKLNEIRDRHKDIQQLERSLLEL 229 (279)
T ss_dssp --------------------HHHHH--C--------------------------------CTTTHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHhC--CchH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 00 00111112234457999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 273 GNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 273 ~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|
T Consensus 230 ~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 230 HEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 99999999999999999999999999999999999999999999999876
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.97 E-value=5.4e-32 Score=249.16 Aligned_cols=237 Identities=19% Similarity=0.215 Sum_probs=168.7
Q ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-
Q 019253 45 SAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV--FDDPT--MEIQELTAVIKQDITALNSAVVDLQLVSNSR- 119 (344)
Q Consensus 45 ~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~--f~d~~--~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~- 119 (344)
.+...+++|+..+++|..+|..|...+.+|.++|++.+. ..+.. .+|+.++..|+..+..|...|+.|+......
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~ 104 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 104 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455678999999999999999999999999999998433 22232 6899999999999999999999998754321
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCC
Q 019253 120 NDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSS 199 (344)
Q Consensus 120 ~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 199 (344)
....++.+.+++++++..|..+|++++..|+.+|..|.+++|.+..|+..++++..++. . ++.+.+ +|
T Consensus 105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tde--e------ie~~ie----~g 172 (267)
T 1dn1_B 105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSE--E------LEDMLE----SG 172 (267)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH--H------HHHHHH----TC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHH--H------HHHHHh----CC
Confidence 11144567799999999999999999999999999999999999999988875533210 0 011101 11
Q ss_pred CCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 200 SPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQL 279 (344)
Q Consensus 200 ~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l 279 (344)
.+..|.. .++. + +. + ......++++|+++|.+|+++|.||++||.+|
T Consensus 173 ~~~~f~q------~~l~------~-----------------~~-~---~~~~l~~i~~R~~~i~~ie~~i~el~~if~dl 219 (267)
T 1dn1_B 173 NPAIFAS------GIIM------D-----------------SS-I---SKQALSEIETRHSEIIKLENSIRELHDMFMDM 219 (267)
T ss_dssp SSCTTTT------TCCC------C-----------------SH-H---HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cHHHHHH------HHHH------h-----------------hH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0110 0 00 0 11235689999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Q 019253 280 ATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 326 (344)
Q Consensus 280 ~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 326 (344)
+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|++.|
T Consensus 220 a~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 220 AMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999998886554
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.90 E-value=1.4e-23 Score=166.78 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhH
Q 019253 251 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 325 (344)
Q Consensus 251 ~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 325 (344)
..+++++|++++.+|+++|.||++||+||++||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|+++
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999998876333
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.86 E-value=9.2e-22 Score=146.72 Aligned_cols=74 Identities=31% Similarity=0.406 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 326 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 326 (344)
.++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|+++|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999887665
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.85 E-value=4.9e-22 Score=182.86 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=169.8
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCCCCCCCCccchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 019253 8 TSFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRSAVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV-FDD 86 (344)
Q Consensus 8 ~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~-f~d 86 (344)
-+|+|||.||+.+.......... ........+++|+..+++|...|..+...+.+|..+|.+... .++
T Consensus 11 g~mkDr~~el~~~~~~~~~~~~~-----------~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~ 79 (279)
T 3c98_B 11 GSMKDRTQELRTAKDSDDDDDVT-----------VTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP 79 (279)
T ss_dssp ---CCCCTTTC----------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CchHHHHHHHHHhhhcccccchh-----------hhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 48999999999876554422211 112345678999999999999999999999999999987322 222
Q ss_pred C---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 87 P---TMEIQELTAVIKQDITALNSAVVDLQLVSNSR-NDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKV 162 (344)
Q Consensus 87 ~---~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~-~~~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~ 162 (344)
. ..+++.++..|+..+..|+..+..++...... .........++..++...|...+..++..|...+..|...++.
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~ 159 (279)
T 3c98_B 80 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 159 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 35899999999999999999988887654322 1124456778999999999999999999999999999999988
Q ss_pred hhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCCCCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHH
Q 019253 163 HESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQ 242 (344)
Q Consensus 163 ~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (344)
...+....+....... ....... .+.+..+. ..+.. ..
T Consensus 160 evr~la~~~~~~~~~~----------~~~~~~~--~~~~~~~~------~~~~~----~~-------------------- 197 (279)
T 3c98_B 160 RIQRQLEITGRTTTSE----------ELEDMLE--SGNPAIFA------SGIIM----DS-------------------- 197 (279)
T ss_dssp HHHHHHHHHTCCCCHH----------HHHHHHH--SCCTTSST------TTSCS----CS--------------------
T ss_pred HHHHHHHhhccCccch----------HHHHHHH--hhhhHHHH------HHHHH----HH--------------------
Confidence 7777665554322110 0000000 00000000 00000 00
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 243 QQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 243 ~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
.........+++++..+.+|+.+|.+|+++|.+|+.+|.+|++++++|++||+.+..+|+.|..+|.+|.+|+++.|
T Consensus 198 ---~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~R 274 (279)
T 3c98_B 198 ---SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 274 (279)
T ss_dssp ---SSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00122345788999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hhHH
Q 019253 323 WLMI 326 (344)
Q Consensus 323 ~~~~ 326 (344)
+|.|
T Consensus 275 kkk~ 278 (279)
T 3c98_B 275 RKKI 278 (279)
T ss_dssp ----
T ss_pred CcCc
Confidence 5543
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.84 E-value=9.6e-21 Score=138.88 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 325 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 325 (344)
++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|+|+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999988653
No 7
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.83 E-value=7.5e-20 Score=160.79 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=137.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV-FDDP-----TMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGI 123 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~-f~d~-----~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~ 123 (344)
+.+|++.+++|..+|..|+..+.+|.++|++... .++. ..+|+.++..|+..++.|+..|+.|+....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------ 77 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------ 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 4689999999999999999999999999999432 2221 258999999999999999999999986431
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCcccccCCccccccccCCCCCCCC
Q 019253 124 SSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPP 203 (344)
Q Consensus 124 ~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~ 203 (344)
..+++++++..|..+|++++..|+.+|..|.+++|.+..|+..+..+..++ +...
T Consensus 78 ---~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~-----------~e~~----------- 132 (196)
T 1fio_A 78 ---HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE-----------DEVE----------- 132 (196)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCH-----------HHHH-----------
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-----------HHHH-----------
Confidence 248899999999999999999999999999999999999986665332110 0000
Q ss_pred CCCCCCCCCcCCCCCcCCCCCchhhhhhhhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 204 WANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLV 283 (344)
Q Consensus 204 ~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV 283 (344)
.++ +.+... + ........ .+..........++++|+++|.+||++|.||++||.|||.||
T Consensus 133 ---------~~~-------~~~~~~-~--~f~~~~~~-~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV 192 (196)
T 1fio_A 133 ---------AAI-------SDVGGQ-Q--IFSQALLN-ANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192 (196)
T ss_dssp ---------HHT-------SHHHHH-H--HHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ---------HHH-------HcCCch-h--HHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 0 00000000 000011224567899999999999999999999999999999
Q ss_pred HHhh
Q 019253 284 SQQG 287 (344)
Q Consensus 284 ~~Qg 287 (344)
++||
T Consensus 193 ~~QG 196 (196)
T 1fio_A 193 IEQQ 196 (196)
T ss_dssp CCCC
T ss_pred HhcC
Confidence 9998
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.81 E-value=9.4e-20 Score=137.65 Aligned_cols=72 Identities=31% Similarity=0.403 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 251 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 251 ~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
...++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999876
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.81 E-value=1.7e-19 Score=131.44 Aligned_cols=67 Identities=31% Similarity=0.416 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 319 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~ 319 (344)
.++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.+|.+|+|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999985
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.76 E-value=2.8e-18 Score=124.66 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019253 252 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 315 (344)
Q Consensus 252 ~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~ 315 (344)
..++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.+|.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999999999985
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.76 E-value=1.7e-18 Score=124.51 Aligned_cols=63 Identities=24% Similarity=0.482 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 316 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~ 316 (344)
++++|+++|.+|+++|.+|++||.+|+.||.+||++||+||+||+.|..||+.|+.+|.||.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999864
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.45 E-value=2e-13 Score=118.18 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=97.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCCCCCCCCccchhhh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCC
Q 019253 9 SFRDRTFEFQSVAERLRKTVSSQNGPSSSSKADEQRS-AVTLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTS-VFDD 86 (344)
Q Consensus 9 ~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~-~f~d 86 (344)
.|+||+.|+++....-.. . ...+. .-. ....+++|+..+++|...|..|...+.+|..+|.+.. .+++
T Consensus 6 ~mkDRl~eL~~~~~~~~~-~--------~~~~~-~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~ 75 (180)
T 1s94_A 6 RTKDRLAALKAAVSDEED-V--------EEVAV-QVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQT 75 (180)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred chhHHHHHHhccccCCCc-c--------ccccc-cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 579999999994332110 0 00011 112 4566789999999999999999999999999999832 2332
Q ss_pred C---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 87 P---TMEIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKV 162 (344)
Q Consensus 87 ~---~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~-~~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~ 162 (344)
. ..+++.++..|+..++.|+..|+.|+.......+ +.++...+++++++..|..+|.+++..|+.++..|.+++|+
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~ 155 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKA 155 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2689999999999999999999999976543321 13456779999999999999999999999999999999999
Q ss_pred hhhhhhhccccCC
Q 019253 163 HESRRQLFSSTAS 175 (344)
Q Consensus 163 ~~~R~~~~~~~~~ 175 (344)
+..|+..++++..
T Consensus 156 ~i~Rq~~I~~~~~ 168 (180)
T 1s94_A 156 RIKRQMEITGRTT 168 (180)
T ss_dssp C------------
T ss_pred HHHHHHHHhCCCC
Confidence 9999888776543
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.33 E-value=1.3e-11 Score=100.51 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=97.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC-CC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC
Q 019253 48 TLQSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV-FD-DP--TMEIQELTAVIKQDITALNSAVVDLQLVSNSRN-DG 122 (344)
Q Consensus 48 ~~~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~-f~-d~--~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~-~~ 122 (344)
..+++|+..+++|...|..|...+.+|..+|.+... .+ +. ..+++.++.+|+..+..|+..|+.|+....... .+
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~ 84 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 456799999999999999999999999999998321 11 22 258999999999999999999999987543211 11
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019253 123 ISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH 163 (344)
Q Consensus 123 ~~~~~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~ 163 (344)
.++.+.+++.+++.+|..+|++++..|+.++..|.+++|.+
T Consensus 85 ~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 85 RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999999999999999864
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.14 E-value=9e-06 Score=60.58 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 322 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r 322 (344)
+++-.+.+..|..+|..|++|..+|+..|.+|..+||.|++.|+.+...+..+++.+.+..+..+++|
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 34445789999999999999999999999999999999999999999999999999999988766543
No 15
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=9.4e-05 Score=59.95 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=91.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPT---MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSD 126 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~---~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~ 126 (344)
..+|...+..|...|..|...+..|.++.+.-+.-.|.. +.|..+...+..+++.+...|+.|....+. .+..
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~----~~~~ 84 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLP----LSTS 84 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----SSHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccc
Confidence 458999999999999999999999999999866666664 589999999999999999999999875421 1233
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 127 TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKV 162 (344)
Q Consensus 127 ~~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~ 162 (344)
..+..+.+..-|...|..+...|+.+|..+.++.|.
T Consensus 85 ~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 85 EQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888899999999999999999998877665
No 16
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.79 E-value=7.9e-05 Score=52.83 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
++-.+.+..|..+|..|++|..+|+..|..|..+||+|++.++.+...+..+++.+.+.
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457899999999999999999999999999999999999999999999999888654
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.79 E-value=0.00019 Score=51.01 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
+-.+.+..|..+|..|++|..+|+..|..|..+||+|+..++.+...+..+++.+.+.
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999988763
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.77 E-value=0.00045 Score=54.11 Aligned_cols=84 Identities=5% Similarity=0.118 Sum_probs=69.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q 019253 248 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 327 (344)
Q Consensus 248 ~~~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~ 327 (344)
+.+....+..=+..+.+|..-..+|+.|..+=+.++..=..-++....||+.+...+.+|.+.= +..++++|||++
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yq----k~~rkk~~i~l~ 91 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ----SKARRKKIMIII 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcceehHH
Confidence 3445667888889999999999999999999999999999999999999999999999998553 444556688876
Q ss_pred HHHHHHHH
Q 019253 328 IFFVLIFF 335 (344)
Q Consensus 328 i~~vl~~~ 335 (344)
++++++++
T Consensus 92 ~~~i~~~i 99 (109)
T 3hd7_B 92 CCVILGII 99 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555433
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.73 E-value=0.00027 Score=53.07 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 315 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~ 315 (344)
++-.+.+..|...|..|++|..+|+..|..|..+||+|+..++.+...+..+++.+.+-.
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 445578999999999999999999999999999999999999999999999999887643
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.46 E-value=0.00048 Score=51.64 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
+-.+.+..|...+..|++|-.+|+..|..|.++||+|+..++.+...+..+++.+.+-
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999988764
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.002 Score=45.33 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 019253 257 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 313 (344)
Q Consensus 257 ~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 313 (344)
+-.+.+.+|...+..|+.|-..|+..|..|-++||+|++.++.+...+..+++.|.+
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999999999999999988754
No 22
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.24 E-value=0.0059 Score=46.07 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMAN 303 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~ 303 (344)
+.+.++...+.|+..++.+=-..|.+-||-||.+++..++-...
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 46778888888888888888888889999999988776655443
No 23
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00027 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCCcccchHHHHHHHHHHhhhcCC
Q 019253 7 QTSFRDRTFEFQSVAERLRKTVSS 30 (344)
Q Consensus 7 ~~~~~DRT~eF~~~~~~~~~~~~~ 30 (344)
.|+++|||.||++++..++++.+.
T Consensus 5 ~~SiqDRT~EF~siv~~lqkr~~~ 28 (50)
T 1mqs_B 5 GMNIKDRTSEFQQSVLSYKKRNKN 28 (50)
T ss_dssp HHHHHBCHHHHHHHHHHHHHHC--
T ss_pred cccccccCHHHHHHHHHHHhcccc
Confidence 468999999999999999988854
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.14 E-value=0.04 Score=37.15 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019253 268 TIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 312 (344)
Q Consensus 268 ~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 312 (344)
-+.|..++-.....++..|||.|++|+.+++....++..|.+.|.
T Consensus 8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344555556667778899999999999999999999999998774
No 25
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.61 E-value=0.23 Score=36.11 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 019253 258 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 313 (344)
Q Consensus 258 r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~k 313 (344)
-.+.+++..+.+.|-.++-.....++..|||.|++|+.+++.+..++..|.+.|.-
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 33456667777778888888889999999999999999999999999999988753
No 26
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.75 E-value=0.0016 Score=51.69 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 299 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~ 299 (344)
.+.++...+.|+..++.+=-..|.+-||-||.+++..++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 455666677777777777667778889988888776654
No 27
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.64 E-value=0.55 Score=33.27 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 279 LATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 279 l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
-..++..|||.|++||.|++.+..+...|.+.|..-..+
T Consensus 31 Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 31 TLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344777999999999999999999999999988665443
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=92.78 E-value=0.44 Score=34.99 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGAL 311 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL 311 (344)
..++.-+-+.+..+.-..=..++..|||.|+||+.+++....++..|.+.|
T Consensus 28 STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 28 STRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666677888999999999999999998888776554
No 29
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=91.66 E-value=2.7 Score=31.62 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCh---HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHH
Q 019253 62 LGIHHTSQKLAKLAKLAKRTSVFDDPT---MEIQ-ELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDD 137 (344)
Q Consensus 62 ~~i~~i~~~l~~L~~l~~~~~~f~d~~---~eI~-~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~ 137 (344)
..|..+...|..|.++..+-+.-.|.. ..|+ .+...+..+.+.++ .|.... ...-
T Consensus 10 ~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-----------------qkeR 68 (97)
T 1hs7_A 10 NLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-----------------QNGK 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------------HCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------------hhhH
Confidence 334444444446666777766555554 2444 44444433333333 121110 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 138 LKNRLMSATKEFKEVLTMRTENLKV 162 (344)
Q Consensus 138 L~~~l~~ls~~F~~~q~~y~~~~k~ 162 (344)
|...|..+...|+.++..|.++.++
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999877654
No 30
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=90.61 E-value=2.4 Score=29.39 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 312 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 312 (344)
.+..-.+.+.|--++-..+...+..|+|.|.+....+..+..++..+.+-|.
T Consensus 10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 4555556666777777888889999999999999999999999999998774
No 31
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=86.60 E-value=7.3 Score=28.15 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
+..-.+.+..-...+.|--++-..+..-+..|.|.|.+....+..+..++..+.+-|..-.++
T Consensus 14 L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 14 LERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 334445677778888888888899999999999999999999999999999999988766554
No 32
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=85.38 E-value=9.7 Score=28.42 Aligned_cols=87 Identities=15% Similarity=0.259 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhh
Q 019253 51 SEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSH 130 (344)
Q Consensus 51 ~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~ 130 (344)
..|+....++...|..+...+.. +.. ........++...-.++...+..+...|..++.. +..+...
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~----~~~-~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--------~~~EI~~ 72 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR----HNT-AGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD--------ENEDVSG 72 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----TCC-C--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS--------TTCCCHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH----ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHH
Confidence 57999999999999999998664 111 1112223577777777777888888887776642 4567788
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019253 131 STTVVDDLKNRLMSATKEFK 150 (344)
Q Consensus 131 ~~nvv~~L~~~l~~ls~~F~ 150 (344)
|+..+..+..++..+-..|.
T Consensus 73 Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 73 REAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888877764
No 33
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=84.53 E-value=13 Score=29.33 Aligned_cols=96 Identities=7% Similarity=0.134 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcC--CCCC
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSN---SRN--DGIS 124 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~---~~~--~~~~ 124 (344)
...|+...++|.+.|..++.....-..+....+. ....++..++.+++..+..+.-.|..|+.... ... -+-+
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~--~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~ 103 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLP 103 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCC
Confidence 4689999999999999999988866555443221 12357778888888888888888888876432 110 0123
Q ss_pred CchhhhHHHHHHHHHHHHHHHHH
Q 019253 125 SDTTSHSTTVVDDLKNRLMSATK 147 (344)
Q Consensus 125 ~~~~~~~~nvv~~L~~~l~~ls~ 147 (344)
..+..-++..+..+..++..+-.
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665543
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=84.36 E-value=9 Score=27.21 Aligned_cols=61 Identities=3% Similarity=0.072 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019253 252 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 312 (344)
Q Consensus 252 ~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ 312 (344)
...+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+.-+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788999999999999999999999999999999999999999999999986443
No 35
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=76.27 E-value=21 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019253 251 QDSYMQSRAEALQNVESTIHELG 273 (344)
Q Consensus 251 ~~~~~~~r~~~i~~ie~~i~eL~ 273 (344)
+.+.+-+|.+.+..|...-.+|.
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHH
Confidence 33344455555555554444443
No 36
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.75 E-value=34 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 301 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~ 301 (344)
+.|.+|...|.|+..++.+=-..|.+-||-||.+++..+.-.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467778888888888888888888899999998887665533
No 37
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.98 E-value=50 Score=25.80 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019253 141 RLMSATKEFKEVLTMRTENLKVHESRRQ 168 (344)
Q Consensus 141 ~l~~ls~~F~~~q~~y~~~~k~~~~R~~ 168 (344)
...+|+.+|+.++..|....+.-.++.+
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aekek 119 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKEK 119 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999877766666553
No 38
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=61.88 E-value=37 Score=23.51 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 314 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka 314 (344)
.+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|...-+++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667888999999999999999999999999999999999999999999998755443
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.99 E-value=69 Score=29.86 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-----C---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCch
Q 019253 56 RASKIGLGIHHTSQKLAKLAKLAKRTS-----V---FDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDT 127 (344)
Q Consensus 56 ~a~~I~~~i~~i~~~l~~L~~l~~~~~-----~---f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~ 127 (344)
.-..+...|.+|+..|.++.+.|+..- + .-....+++.....+.+....++++|.-|+..+.... ..
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~-----~~ 135 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV-----QR 135 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-----HH
Confidence 336777888888888888887777521 0 1111123334444444445555666655555443321 13
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 019253 128 TSHSTTVVDDLKNRLMSATKE 148 (344)
Q Consensus 128 ~~~~~nvv~~L~~~l~~ls~~ 148 (344)
.+..++++..+..+++.|-.+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544433
No 40
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=56.89 E-value=10 Score=29.59 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019253 257 SRAEALQN 264 (344)
Q Consensus 257 ~r~~~i~~ 264 (344)
+|.+.+..
T Consensus 58 eRGEkLd~ 65 (119)
T 2kog_A 58 ERDQKLSE 65 (119)
T ss_dssp CCCCSSCC
T ss_pred HcccHHHH
Confidence 34333333
No 41
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=51.26 E-value=16 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=14.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 019253 320 SNRWLMIKIFFVLIFFLMIFLFF 342 (344)
Q Consensus 320 ~~r~~~~~i~~vl~~~~l~~~~~ 342 (344)
+.+-+++-+.+|+|.++++++++
T Consensus 4 n~qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 4 NTRELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666653
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.20 E-value=58 Score=23.15 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 307 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g 307 (344)
..|..||..+.-.-..-.+|+..|..|...||++...+..-...+...
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888999999999999988887766665543
No 43
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=43.10 E-value=57 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 019253 262 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 299 (344)
Q Consensus 262 i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~ 299 (344)
+..+...+.|+..+..+=-.-|.+-||-||.+.+..+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445555555555555555666778888777665554
No 44
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.92 E-value=78 Score=21.37 Aligned_cols=55 Identities=5% Similarity=0.180 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 308 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 308 (344)
.+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566777777778888888888888887777888888888888888777664
No 45
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=38.54 E-value=93 Score=21.24 Aligned_cols=57 Identities=4% Similarity=0.073 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 309 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~ 309 (344)
..+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777788888888888888877777788888888888888877764
No 46
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=38.36 E-value=74 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 133 TVVDDLKNRLMSATKEFKEVLTMRTEN 159 (344)
Q Consensus 133 nvv~~L~~~l~~ls~~F~~~q~~y~~~ 159 (344)
+-++.|.++|+.+...|...|..-..+
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999988764433
No 47
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=37.96 E-value=1.1e+02 Score=21.78 Aligned_cols=61 Identities=3% Similarity=0.094 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHH
Q 019253 250 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 310 (344)
Q Consensus 250 ~~~~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~e 310 (344)
.....+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+.
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778889999999999999999999999988999999999999999999988764
No 48
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=34.60 E-value=1.2e+02 Score=21.40 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 51 SEFNRRASKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDL 112 (344)
Q Consensus 51 ~~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L 112 (344)
..|......|.+.+..+..-|.++.....+.+ ..+..|+..+...|..+...|+.+
T Consensus 12 ~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~------~aL~~L~~qL~~NFgAISssi~dI 67 (77)
T 2bez_C 12 NQFNKAISQIQESLTTTSTALGKLQDVVNQNA------QALNTLVKQLSSNFGAISSVLNDI 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46888889999999999998888887776642 466777777777777776666554
No 49
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=33.74 E-value=73 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 019253 101 DITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 148 (344)
Q Consensus 101 ~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~~ls~~ 148 (344)
.+..|...|..|+++......--.+-+.+.+.+.+..|+..|......
T Consensus 59 ~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~ 106 (111)
T 2l3l_A 59 RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRG 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666554332123456677777777777777665544
No 50
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=32.13 E-value=1.4e+02 Score=21.30 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019253 255 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 317 (344)
Q Consensus 255 ~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~ka~~~ 317 (344)
++.-++.|.+|......+.-.-+-+...|..+|-+ .|.-+...|...++....+|+|+.+.
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 34455556666665555555555555555555543 46777888889999999999888764
No 51
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=30.44 E-value=14 Score=20.37 Aligned_cols=9 Identities=56% Similarity=0.933 Sum_probs=6.1
Q ss_pred cccchHHHH
Q 019253 10 FRDRTFEFQ 18 (344)
Q Consensus 10 ~~DRT~eF~ 18 (344)
|||||-|.+
T Consensus 1 mrdrthelr 9 (29)
T 2pjx_C 1 MRDRTHELR 9 (29)
T ss_pred Cccchhhhh
Confidence 577777654
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.20 E-value=2.5e+02 Score=26.16 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 019253 65 HHTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLM 143 (344)
Q Consensus 65 ~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nvv~~L~~~l~ 143 (344)
..+...|++|...... +.....++..++..|+..++.-..+....+..... .+....+|..-+...+..+|.
T Consensus 63 r~~~~rIe~L~~~L~~---~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e----~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFN---YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQ----INEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred hhHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHH----HHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555543332 23334567777777776666666666555543332 223344555555555555555
No 53
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.28 E-value=1.3e+02 Score=21.19 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 019253 261 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 299 (344)
Q Consensus 261 ~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~ 299 (344)
.|..+...+.|+..++.+=-..|.+-||-||.+++..+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455556666666666666666777888888888766554
No 54
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=29.08 E-value=1.4e+02 Score=20.28 Aligned_cols=56 Identities=4% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 019253 253 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 308 (344)
Q Consensus 253 ~~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~ 308 (344)
..+..-...|.+|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566677777777777777777777777777777777777777777776653
No 55
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=28.80 E-value=3.2e+02 Score=24.57 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 254 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 254 ~~~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
.+..-.+.+..|...+.++.+.+.+++..+.+|...++.|..++.....-++.
T Consensus 221 ~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 273 (341)
T 3zx6_A 221 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 273 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788888889999999999999999988888888777665544433
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.71 E-value=2.1e+02 Score=27.83 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-----CC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019253 54 NRRASKIGLGIHHTSQKLAKLAKLAKRT-----SV---FDDPTMEIQELTAVIKQDITALNSAVVDLQLVS 116 (344)
Q Consensus 54 ~~~a~~I~~~i~~i~~~l~~L~~l~~~~-----~~---f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~~ 116 (344)
.+.=..+...|++|+..+++|.+.++.. .+ ......+.......+.+....++++|..|+..+
T Consensus 56 dkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777776555541 00 112122333444444444446666766666543
No 57
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.69 E-value=1.1e+02 Score=19.03 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 50 QSEFNRRASKIGLGIHHTSQKLAKLAKL 77 (344)
Q Consensus 50 ~~~F~~~a~~I~~~i~~i~~~l~~L~~l 77 (344)
.++..+..+.|..+|.+...+|.+|..-
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777766543
No 58
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=27.62 E-value=2.7e+02 Score=23.69 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 306 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~~ 306 (344)
..-...+..|...+.++..++.+++..+.+|...++.|..++.....-++.
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 143 ESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888888889999999999999988888888877765544443
No 59
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.16 E-value=1.6e+02 Score=20.63 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019253 133 TVVDDLKNRLMSATKEFKEVLTMRTENL 160 (344)
Q Consensus 133 nvv~~L~~~l~~ls~~F~~~q~~y~~~~ 160 (344)
+-+..|++||+.+...|...|..-..++
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999997655444
No 60
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=26.13 E-value=2.6e+02 Score=22.64 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 019253 256 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 305 (344)
Q Consensus 256 ~~r~~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~~~v~ 305 (344)
+.+.-..+.|.+....|+.+-..|-.|+..|.+.|+++|..|......|.
T Consensus 50 eTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 50 ETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788899999999999999999999999999999999987665543
No 61
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.04 E-value=1.5e+02 Score=19.95 Aligned_cols=38 Identities=8% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 019253 262 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 299 (344)
Q Consensus 262 i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~ 299 (344)
|..+...+.++..++.+=-..|.+=|+-|+.|++-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777788877777766655
No 62
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.77 E-value=82 Score=18.38 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 019253 330 FVLIFFLMIFLFF 342 (344)
Q Consensus 330 ~vl~~~~l~~~~~ 342 (344)
++..+.+++|.+|
T Consensus 10 l~~tlgiiFFAI~ 22 (32)
T 3arc_T 10 FACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3333344455554
No 63
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.55 E-value=4.7e+02 Score=25.00 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019253 52 EFNRRASKIGLGIHHTSQKLAKLAKLAKRTSV--------FDDPTMEIQELTAVIKQDITALNSAVVDLQLV 115 (344)
Q Consensus 52 ~F~~~a~~I~~~i~~i~~~l~~L~~l~~~~~~--------f~d~~~eI~~lt~~Ik~~~~~~~~~I~~L~~~ 115 (344)
...+.=..+...|.+|+..|.++.++++..-. ......+++.....+.+-...++++|.-|+..
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 34445567888899999999988887775210 00011234444455555555566665555543
No 64
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.48 E-value=80 Score=19.89 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 019253 326 IKIFFVLIFFL 336 (344)
Q Consensus 326 ~~i~~vl~~~~ 336 (344)
..+++++++++
T Consensus 16 ~~vVGvll~vi 26 (44)
T 2jwa_A 16 SAVVGILLVVV 26 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 65
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.58 E-value=2.3e+02 Score=21.19 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhcCCC---CCCch--
Q 019253 58 SKIGLGIHHTSQKLAKLAKLAKRTSVFDDPTMEIQELT-----AVIKQDITALNSAVVDLQLVSNSRNDG---ISSDT-- 127 (344)
Q Consensus 58 ~~I~~~i~~i~~~l~~L~~l~~~~~~f~d~~~eI~~lt-----~~Ik~~~~~~~~~I~~L~~~~~~~~~~---~~~~~-- 127 (344)
...-..+..|+..|..|..+..+-. .....+ |+ ..++..+..+-..|..+....+..-.. .+...
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~---~~~~~~--L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 82 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVK---RKHSAI--LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888888888877776521 100111 22 234444444444444433322211000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019253 128 TSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ 168 (344)
Q Consensus 128 ~~~~~nvv~~L~~~l~~ls~~F~~~q~~y~~~~k~~~~R~~ 168 (344)
..........-......++..|+++...|.......+++++
T Consensus 83 ~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 83 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234556777889999999999999876666555553
No 66
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=22.67 E-value=1.4e+02 Score=18.17 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019253 263 QNVESTIHELGNIFNQLATLVSQQGEIAIRID 294 (344)
Q Consensus 263 ~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id 294 (344)
.++...+...+.-+..+-.-|..||+.|..+-
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35566677777777888888888888876653
No 67
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=22.44 E-value=75 Score=18.15 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=14.1
Q ss_pred CCCCCCCCcccchH-HHHHH
Q 019253 2 PVKAAQTSFRDRTF-EFQSV 20 (344)
Q Consensus 2 ~~~~~~~~~~DRT~-eF~~~ 20 (344)
||+|++.++|-|.+ -++++
T Consensus 11 ~~~PaP~p~RRrSSANYR~Y 30 (32)
T 2jpw_A 11 EPQPAPAPVRRRSSANYRAY 30 (32)
T ss_dssp CCCCCCCCCCCTTHHHHHHH
T ss_pred CCCCCCcccccccccccccc
Confidence 67888889998875 55543
No 68
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=22.10 E-value=1.8e+02 Score=19.31 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 019253 260 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 301 (344)
Q Consensus 260 ~~i~~ie~~i~eL~~lf~~l~~lV~~Qge~id~Id~nv~~a~ 301 (344)
+.+..+...+.++..++.+=-..|.+-|+-||.+++..+.-.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 457788888888888888888888899999988877665543
No 69
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.91 E-value=2.4e+02 Score=20.75 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019253 92 QELTAVIKQDITALNSAVVDLQLVSNS 118 (344)
Q Consensus 92 ~~lt~~Ik~~~~~~~~~I~~L~~~~~~ 118 (344)
......|...+..++.-|.+|+-....
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~ 63 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVRE 63 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888999998888765543
No 70
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.90 E-value=2.4e+02 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 019253 144 SATKEFKEVLTMRTENLKVHESRRQL 169 (344)
Q Consensus 144 ~ls~~F~~~q~~y~~~~k~~~~R~~~ 169 (344)
.++.+|..+...|..--+.-.+|...
T Consensus 68 RL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 68 KLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999998766655555543
No 71
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=20.58 E-value=39 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=14.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019253 288 EIAIRIDENMDDTMANVEGAQGALLKYL 315 (344)
Q Consensus 288 e~id~Id~nv~~a~~~v~~g~~eL~ka~ 315 (344)
.|.|.+++-++...+.++.+.+=|+++.
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~ 40 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCK 40 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777888877777666553
Done!