BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019254
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
          Length = 535

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 53  SSDLVNLRYHMGPVLSSSPINIYLVWYGRWPNYQKLLIKDFILSISPXXXXXKPSVSDWW 112
           SSD V      GP+  +  +  ++  Y    +Y+     D              +  DWW
Sbjct: 68  SSDTVTSPQRAGPL--AGGVTTFVALY----DYESRTETDLSFKKGERLQIVNNTEGDWW 121

Query: 113 RTVSLYTDQTGANVSRTVLIAGEHSDHLYSHGKSLTRLSVQQVIGTAVESAPFPVDHKNG 172
              SL T QTG   S  V  +       +  GK +TR   ++++  A        ++  G
Sbjct: 122 LAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGK-ITRRESERLLLNA--------ENPRG 172

Query: 173 IFLILTADDVTMQDYCRAVCGF 194
            FL+  + + T   YC +V  F
Sbjct: 173 TFLVRES-ETTKGAYCLSVSDF 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,622,279
Number of Sequences: 62578
Number of extensions: 365580
Number of successful extensions: 668
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 5
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)