BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019254
         (344 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9EVI8|LEU1_BUCUN 2-isopropylmalate synthase (Fragment) OS=Buchnera aphidicola subsp.
           Uroleucon sonchi GN=leuA PE=3 SV=1
          Length = 502

 Score = 37.7 bits (86), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 143 HGKSLTRLSVQQVIGTAVESAPFPVDHKNGI-FLILTADDVTMQDYCRAV-----CGFHY 196
           H +S  R +  ++I  A+ S    + + + + F    A   TM + CR V     CG   
Sbjct: 93  HMESKLRKNFDEIIDMAIFSVKRALRYTDDVEFSCEDASRTTMDNLCRIVEKLISCGVKT 152

Query: 197 FTFPSMVGYTMPYAW---IGNSAKQCPEVCSYPFAVP-----GYMAGGGPAALKPPNGDV 248
              P  VGYT+P      I N  ++ P +     +V      G   G   +A++   G  
Sbjct: 153 INIPDTVGYTIPNELSLIIKNLFERVPNIHKSTISVHCHNDLGMAVGNSISAIQA--GAR 210

Query: 249 GVDGMISVIAHELAELSTNPLVNAWYAGED 278
            ++G I+ I       +   ++ A    ED
Sbjct: 211 QIEGTINGIGERAGNTALEEVIMAIKVRED 240


>sp|P06109|XP55_STRLI Protein XP55 OS=Streptomyces lividans GN=xp55 PE=3 SV=1
          Length = 542

 Score = 34.3 bits (77), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 76  LVWYGRWPN---YQKLLIKDFILSISPAAAAAKPSVSDWWRTVSLYTDQTGANVS 127
           L+ YG+  N   +  LL +D  L + PA AAA P V+D  RT++ +T + G N S
Sbjct: 66  LLGYGKDGNSKIFDGLLARDTDLELKPALAAALPKVTDDGRTIT-FTLREGVNFS 119


>sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Homo sapiens GN=WNK2 PE=1
            SV=4
          Length = 2297

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 274  YAGEDPTAPTEIGDLCEGLYGTGGGGGYIGQVMRDNKGRTFNMNGRRGR 322
            Y G D T+  E+ D CEG +   GGG   G+  R +  R+     R+ R
Sbjct: 1138 YGGSDVTSGKELSDSCEGAF---GGGRLEGRAARKHHRRSTRARSRQER 1183


>sp|A0LU34|MSHC_ACIC1 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside
           ligase OS=Acidothermus cellulolyticus (strain ATCC 43068
           / 11B) GN=mshC PE=3 SV=1
          Length = 403

 Score = 32.0 bits (71), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 239 AALKPPNGDVGVDGMISVIAHELAELSTNP----LVNAWYA--GEDPTAPTEIGDLCEGL 292
           AA++ P G  G DG+++ +   LA+    P    L++ W    G+DP APT +  + + L
Sbjct: 340 AAVRRPRGAPG-DGLLAAVRDRLADDLDAPGAIALIDEWTTQDGDDPDAPTLVAAMADAL 398

Query: 293 YGT 295
            G 
Sbjct: 399 LGV 401


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,691,308
Number of Sequences: 539616
Number of extensions: 6152832
Number of successful extensions: 14519
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14515
Number of HSP's gapped (non-prelim): 9
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)