Query 019254
Match_columns 344
No_of_seqs 128 out of 179
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_B Cytochrome C oxidase po 49.8 7 0.00024 35.7 2.0 16 165-182 144-159 (227)
2 2b5b_A Defensin; antibiotic; N 25.9 23 0.0008 23.7 1.0 10 216-225 1-10 (36)
3 1fft_B Ubiquinol oxidase; elec 23.8 41 0.0014 32.2 2.7 16 165-182 155-170 (315)
4 2yev_B Cytochrome C oxidase su 23.9 25 0.00084 33.4 0.0 16 165-182 145-160 (337)
5 3s8f_B Cytochrome C oxidase su 16.7 59 0.002 28.3 2.0 9 185-193 146-154 (168)
6 4dx8_A Integrin beta-1-binding 14.1 3.2E+02 0.011 23.9 5.9 57 129-185 18-76 (154)
7 1cyx_A CYOA; electron transpor 14.0 70 0.0024 29.0 1.8 17 165-183 45-61 (205)
8 1cno_A Cytochrome C552; electr 13.6 98 0.0034 22.3 2.2 20 80-99 65-84 (87)
9 2hjq_A Hypothetical protein YQ 13.3 59 0.002 27.0 0.9 14 311-327 9-22 (111)
10 2gsm_B Cytochrome C oxidase su 11.9 86 0.0029 29.0 1.7 13 171-183 179-191 (262)
No 1
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=49.78 E-value=7 Score=35.66 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=12.6
Q ss_pred CCCCCCCceEEEeccCCc
Q 019254 165 FPVDHKNGIFLILTADDV 182 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV 182 (344)
+|.+ .-|.+.+||+||
T Consensus 144 lP~~--~~Vr~~vtS~DV 159 (227)
T 1v54_B 144 LPME--MTIRMLVSSEDV 159 (227)
T ss_dssp EETT--SCEEEEEEESSS
T ss_pred EecC--CEEEEEEEeCcc
Confidence 4544 469999999999
No 2
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=25.87 E-value=23 Score=23.72 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 019254 216 AKQCPEVCSY 225 (344)
Q Consensus 216 ~~qCPg~CAw 225 (344)
|+.|||+|..
T Consensus 1 ekkcpgrctl 10 (36)
T 2b5b_A 1 EKKCPGRCTL 10 (36)
T ss_dssp CCCCSSCSSS
T ss_pred CCCCCcceeE
Confidence 5789999975
No 3
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=23.77 E-value=41 Score=32.20 Aligned_cols=16 Identities=25% Similarity=0.737 Sum_probs=13.3
Q ss_pred CCCCCCCceEEEeccCCc
Q 019254 165 FPVDHKNGIFLILTADDV 182 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV 182 (344)
+|.+ .-|.+.+||.||
T Consensus 155 lP~g--~~V~~~lTS~DV 170 (315)
T 1fft_B 155 FPAN--TPVYFKVTSNSV 170 (315)
T ss_dssp CCSS--SEEEEEECBSSS
T ss_pred EeCC--CEEEEEEEeCCc
Confidence 5655 479999999999
No 4
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=23.88 E-value=25 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.4
Q ss_pred CCCCCCCceEEEeccCCc
Q 019254 165 FPVDHKNGIFLILTADDV 182 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV 182 (344)
+|.+ .-|.+.+||.||
T Consensus 145 ~P~~--~~v~~~~ts~DV 160 (337)
T 2yev_B 145 LPAG--VPVELEITSKDV 160 (337)
Confidence 4554 368999999998
No 5
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=16.67 E-value=59 Score=28.32 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.7
Q ss_pred ccccccccc
Q 019254 185 QDYCRAVCG 193 (344)
Q Consensus 185 ~gFC~s~CG 193 (344)
.+.|+..||
T Consensus 146 ~g~Cse~CG 154 (168)
T 3s8f_B 146 RIICNQYCG 154 (168)
T ss_dssp EEECCSCCS
T ss_pred EEECCcCCC
Confidence 467888887
No 6
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=14.08 E-value=3.2e+02 Score=23.91 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=41.4
Q ss_pred eEEEceEEecCCCCCCCCCC-hhhHHHHHHHhhhcCCCCCCC-CCceEEEeccCCcccc
Q 019254 129 TVLIAGEHSDHLYSHGKSLT-RLSVQQVIGTAVESAPFPVDH-KNGIFLILTADDVTMQ 185 (344)
Q Consensus 129 ~v~lg~qv~D~~ySlGksLt-~~~i~~lv~~ai~~~~lP~~~-~~gvylVLTa~DV~v~ 185 (344)
+|++-+++.+-.-+++++|. +.++.+.|..+-..|.||... ..-+.+-|+.-+|.+.
T Consensus 18 ~VKylG~i~~l~~~~~~~~~~~~ell~~ID~aQq~gkLP~~~~~Edvi~svSkyGvkl~ 76 (154)
T 4dx8_A 18 RIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVS 76 (154)
T ss_dssp EEEEEEEEEEESCC---CCCHHHHHHHHHHHHHHTTSSCSSCCSCCEEEEEETTEEEEE
T ss_pred EEEEEEEEeecccccCccccCcHHHHHHHHHHHHhCcCCCCCCcCeEEEEEeccCcEEE
Confidence 69999999875557778876 678888998888888888442 2348888888888884
No 7
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=14.02 E-value=70 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.682 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEeccCCcc
Q 019254 165 FPVDHKNGIFLILTADDVT 183 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV~ 183 (344)
+|.+ .-|.+.|||.||.
T Consensus 45 lP~g--~~V~~~lTS~DVi 61 (205)
T 1cyx_A 45 FPAN--TPVYFKVTSNSVM 61 (205)
T ss_dssp EETT--SCEEEEEEESSSC
T ss_pred EeCC--CEEEEEEecCCce
Confidence 4544 4699999999984
No 8
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=13.56 E-value=98 Score=22.27 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=17.8
Q ss_pred ecCCchhHHHHHHHHHhcCC
Q 019254 80 GRWPNYQKLLIKDFILSISP 99 (344)
Q Consensus 80 G~ftp~QksiI~DFl~Sls~ 99 (344)
+.+++.|...|.+||.+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPA 84 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCT
T ss_pred hhCCHHHHHHHHHHHHhCCc
Confidence 46899999999999999975
No 9
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=13.25 E-value=59 Score=27.00 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=12.5
Q ss_pred CcccccccCCCceeeee
Q 019254 311 GRTFNMNGRRGRRFMVQ 327 (344)
Q Consensus 311 GASyNa~G~nGRkfLlp 327 (344)
|.|||+. ||.||+-
T Consensus 9 GkTY~v~---g~~Fll~ 22 (111)
T 2hjq_A 9 GKTYNVM---GITFRAG 22 (111)
T ss_dssp CSEEEET---TEEEEBT
T ss_pred CceEEEe---eeEEecC
Confidence 9999998 8999974
No 10
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=11.94 E-value=86 Score=29.02 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=11.1
Q ss_pred CceEEEeccCCcc
Q 019254 171 NGIFLILTADDVT 183 (344)
Q Consensus 171 ~gvylVLTa~DV~ 183 (344)
.-|.+.+||.||.
T Consensus 179 ~~v~~~~tS~DVi 191 (262)
T 2gsm_B 179 KTVVVQVTGADVI 191 (262)
T ss_dssp SEEEEEEEESSSC
T ss_pred CEEEEEEEECccc
Confidence 4699999999993
Done!