Query 019254
Match_columns 344
No_of_seqs 128 out of 179
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 13:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5e2 f.23.12.1 (E:31-86) Ir 33.9 8.9 0.00065 26.8 1.8 15 86-100 41-55 (56)
2 d1v54b1 b.6.1.2 (B:91-227) Cyt 31.8 9.2 0.00067 30.4 1.9 17 165-183 54-70 (137)
3 d3ehbb1 b.6.1.2 (B:108-252) Cy 22.4 16 0.0012 28.9 1.7 17 165-183 57-73 (145)
4 d1cyxa_ b.6.1.2 (A:) Quinol ox 21.6 18 0.0013 29.3 1.9 21 165-188 31-51 (158)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 19.2 26 0.0019 25.1 2.1 15 86-100 51-65 (69)
6 d3dtub1 b.6.1.2 (B:130-281) Cy 19.1 21 0.0015 28.6 1.7 13 171-183 75-87 (152)
7 d1c53a_ a.3.1.1 (A:) Cytochrom 14.3 28 0.0021 23.3 1.2 20 78-97 60-79 (79)
8 d2c8sa1 a.3.1.1 (A:24-172) Cyt 13.7 35 0.0026 26.3 1.7 22 78-99 89-110 (149)
9 d1eb7a2 a.3.1.5 (A:165-323) Di 13.5 59 0.0043 25.6 3.2 20 81-100 119-138 (159)
10 d1wvec1 a.3.1.1 (C:602-675) p- 13.2 44 0.0032 22.8 2.0 19 80-98 55-73 (74)
No 1
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.86 E-value=8.9 Score=26.79 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCC
Q 019254 86 QKLLIKDFILSISPA 100 (344)
Q Consensus 86 QksiI~DFl~Sls~~ 100 (344)
-|++|.|||.+++++
T Consensus 41 AKstV~~FlssMSAS 55 (56)
T d3cx5e2 41 AKSTVETFISSMTAT 55 (56)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcccc
Confidence 589999999999874
No 2
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.76 E-value=9.2 Score=30.36 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.0
Q ss_pred CCCCCCCceEEEeccCCcc
Q 019254 165 FPVDHKNGIFLILTADDVT 183 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV~ 183 (344)
+|.+ .-|.+.|||.||.
T Consensus 54 lP~g--~~v~~~ltS~DVi 70 (137)
T d1v54b1 54 LPME--MTIRMLVSSEDVL 70 (137)
T ss_dssp EETT--SCEEEEEEESSSC
T ss_pred eecc--ccceeeeccCccc
Confidence 4544 4799999999993
No 3
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]}
Probab=22.41 E-value=16 Score=28.94 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=13.1
Q ss_pred CCCCCCCceEEEeccCCcc
Q 019254 165 FPVDHKNGIFLILTADDVT 183 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV~ 183 (344)
+|.+ .-|-+.|||.||.
T Consensus 57 lP~g--~~V~~~ltS~DVi 73 (145)
T d3ehbb1 57 VPVG--KKVLVQVTATDVI 73 (145)
T ss_dssp EETT--SEEEEEEEESSSC
T ss_pred Eecc--ceEEEEEEeCccc
Confidence 4544 4789999999994
No 4
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=21.59 E-value=18 Score=29.30 Aligned_cols=21 Identities=19% Similarity=0.648 Sum_probs=14.2
Q ss_pred CCCCCCCceEEEeccCCccccccc
Q 019254 165 FPVDHKNGIFLILTADDVTMQDYC 188 (344)
Q Consensus 165 lP~~~~~gvylVLTa~DV~v~gFC 188 (344)
+|.+ .-|.+.|||.||. .+|+
T Consensus 31 lP~g--~pV~~~ltS~DVi-HsF~ 51 (158)
T d1cyxa_ 31 FPAN--TPVYFKVTSNSVM-HSFF 51 (158)
T ss_dssp EETT--SCEEEEEEESSSC-EEEE
T ss_pred eeCC--CeEEEEEEcCCcc-hhhh
Confidence 4544 4688899999984 4444
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.21 E-value=26 Score=25.12 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCC
Q 019254 86 QKLLIKDFILSISPA 100 (344)
Q Consensus 86 QksiI~DFl~Sls~~ 100 (344)
-|++|.+|+.+++++
T Consensus 51 AK~~V~~fvssmSaS 65 (69)
T d1ppje2 51 AKNVVSQFVSSMSAS 65 (69)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhcCcc
Confidence 589999999999875
No 6
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.12 E-value=21 Score=28.61 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.9
Q ss_pred CceEEEeccCCcc
Q 019254 171 NGIFLILTADDVT 183 (344)
Q Consensus 171 ~gvylVLTa~DV~ 183 (344)
.-|.+.|||.||.
T Consensus 75 ~~v~~~ltS~DVi 87 (152)
T d3dtub1 75 KTVVVQVTGADVI 87 (152)
T ss_dssp SEEEEEEEESSSC
T ss_pred CEEEEEEecCchh
Confidence 4688999999994
No 7
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=14.32 E-value=28 Score=23.28 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=17.5
Q ss_pred EeecCCchhHHHHHHHHHhc
Q 019254 78 WYGRWPNYQKLLIKDFILSI 97 (344)
Q Consensus 78 wYG~ftp~QksiI~DFl~Sl 97 (344)
|-++.|+.|...|.+||.||
T Consensus 60 ~~~~Lsd~ei~~l~aYi~sL 79 (79)
T d1c53a_ 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 45679999999999999987
No 8
>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}
Probab=13.69 E-value=35 Score=26.29 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=19.7
Q ss_pred EeecCCchhHHHHHHHHHhcCC
Q 019254 78 WYGRWPNYQKLLIKDFILSISP 99 (344)
Q Consensus 78 wYG~ftp~QksiI~DFl~Sls~ 99 (344)
|.+++++.|...|..||++|..
T Consensus 89 ~~~~Lsdeei~~ivaYvr~l~~ 110 (149)
T d2c8sa1 89 HNENLTPDEMLQTIAWIRHLYT 110 (149)
T ss_dssp CCCCSCHHHHHHHHHHHHHTCC
T ss_pred cccCCCHHHHHHHHHHHHHhcc
Confidence 5678999999999999999975
No 9
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.52 E-value=59 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=17.7
Q ss_pred cCCchhHHHHHHHHHhcCCC
Q 019254 81 RWPNYQKLLIKDFILSISPA 100 (344)
Q Consensus 81 ~ftp~QksiI~DFl~Sls~~ 100 (344)
+.++.|++-|..||+||+..
T Consensus 119 ~Ls~~e~~~LvaFL~sLt~~ 138 (159)
T d1eb7a2 119 QLAPDDVENIVAFLHSLSGK 138 (159)
T ss_dssp CCCHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 37889999999999999875
No 10
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=13.21 E-value=44 Score=22.77 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=16.6
Q ss_pred ecCCchhHHHHHHHHHhcC
Q 019254 80 GRWPNYQKLLIKDFILSIS 98 (344)
Q Consensus 80 G~ftp~QksiI~DFl~Sls 98 (344)
+..++.|...|.+||.||.
T Consensus 55 ~~lsd~ei~~l~~Yi~slp 73 (74)
T d1wvec1 55 SYVDDESLTQVAEYLSSLP 73 (74)
T ss_dssp TTSCHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhCC
Confidence 3589999999999999984
Done!