Query 019257
Match_columns 343
No_of_seqs 181 out of 1174
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 6.6E-38 2.2E-42 292.4 18.6 189 146-339 2-191 (257)
2 3rgf_B Cyclin-C; protein kinas 100.0 3.8E-38 1.3E-42 299.7 15.3 197 127-339 4-201 (285)
3 2pk2_A Cyclin-T1, protein TAT; 100.0 2E-36 6.9E-41 296.9 14.2 190 145-339 8-198 (358)
4 2i53_A Cyclin K; cell cycle, t 100.0 9.4E-36 3.2E-40 277.3 15.4 187 144-339 10-199 (258)
5 1jkw_A Cyclin H; cell cycle, c 100.0 4.6E-34 1.6E-38 276.4 17.4 185 131-339 3-214 (323)
6 1zp2_A RNA polymerase II holoe 100.0 1.5E-34 5E-39 266.9 12.0 176 131-339 2-178 (235)
7 1c9b_A General transcription f 99.9 4.2E-26 1.4E-30 206.1 13.7 140 177-338 6-145 (207)
8 2b9r_A Human cyclin B1; cell c 99.9 3.5E-23 1.2E-27 194.8 13.1 149 171-339 33-182 (269)
9 3g33_B CCND3 protein; Ser/Thr 99.9 2.5E-23 8.5E-28 199.8 11.1 158 163-339 58-219 (306)
10 2cch_B Cyclin A2, cyclin-A; co 99.9 3.5E-23 1.2E-27 193.7 11.3 148 172-338 35-184 (260)
11 2w96_A G1/S-specific cyclin-D1 99.9 3.7E-23 1.3E-27 194.6 10.5 152 168-338 49-204 (271)
12 1g3n_C V-cyclin; cyclin-depend 99.9 2.4E-22 8.1E-27 187.7 12.9 151 169-338 44-198 (257)
13 2f2c_A Cyclin homolog, V-cycli 99.9 2.3E-22 8E-27 187.4 10.5 153 167-338 43-199 (254)
14 1ais_B TFB TFIIB, protein (tra 99.9 1.1E-21 3.6E-26 176.2 13.7 144 171-337 5-150 (200)
15 1f5q_B Gamma herpesvirus cycli 99.8 5.4E-20 1.9E-24 172.4 13.4 154 166-338 39-196 (252)
16 1w98_B Cyclin E, G1/S-specific 99.8 7.4E-20 2.5E-24 173.6 13.4 147 173-338 47-205 (283)
17 3k7a_M Transcription initiatio 99.8 9.4E-20 3.2E-24 177.6 5.4 140 177-338 127-278 (345)
18 4bbr_M Transcription initiatio 99.5 2.1E-14 7.1E-19 140.2 9.1 131 177-329 127-269 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 1.2E-05 4E-10 71.4 9.5 89 180-289 109-197 (200)
20 1c9b_A General transcription f 97.6 0.00018 6E-09 64.2 8.8 67 180-246 103-169 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.0 0.0029 9.8E-08 60.4 9.8 103 180-304 78-184 (293)
22 3k7a_M Transcription initiatio 95.9 0.0013 4.6E-08 63.6 0.0 68 180-247 236-303 (345)
23 4bbr_M Transcription initiatio 95.7 0.0017 5.8E-08 63.1 0.0 70 178-247 234-303 (345)
24 1zp2_A RNA polymerase II holoe 94.3 0.076 2.6E-06 48.0 6.6 56 180-235 135-190 (235)
25 3rgf_B Cyclin-C; protein kinas 92.3 0.1 3.5E-06 48.8 4.2 56 180-235 158-213 (285)
26 2i53_A Cyclin K; cell cycle, t 91.8 0.24 8.3E-06 45.0 6.0 56 180-235 152-211 (258)
27 2ivx_A Cyclin-T2; transcriptio 89.9 0.49 1.7E-05 43.0 6.2 56 180-235 147-203 (257)
28 2b9r_A Human cyclin B1; cell c 89.4 0.45 1.5E-05 43.9 5.6 57 180-236 139-195 (269)
29 3m03_A ORC6, origin recognitio 88.5 2.5 8.6E-05 33.7 8.6 60 183-243 6-70 (95)
30 2f2c_A Cyclin homolog, V-cycli 85.5 3.3 0.00011 37.5 8.9 54 180-233 153-210 (254)
31 2cch_B Cyclin A2, cyclin-A; co 85.4 1.2 4.2E-05 40.5 6.0 58 179-236 139-198 (260)
32 2pk2_A Cyclin-T1, protein TAT; 83.9 0.68 2.3E-05 44.8 3.6 56 180-235 154-210 (358)
33 3h4c_A Transcription factor TF 83.3 3.9 0.00013 37.2 8.0 65 179-243 15-82 (260)
34 1g3n_C V-cyclin; cyclin-depend 82.6 2.2 7.5E-05 38.8 6.4 56 179-234 151-210 (257)
35 1jkw_A Cyclin H; cell cycle, c 79.7 1.8 6.1E-05 41.1 4.9 45 191-235 182-226 (323)
36 2w96_A G1/S-specific cyclin-D1 75.9 2.8 9.6E-05 38.4 4.8 55 179-233 157-215 (271)
37 4ell_A Retinoblastoma-associat 75.5 11 0.00036 37.4 9.1 68 179-247 282-353 (411)
38 2qdj_A Retinoblastoma-associat 74.0 6.6 0.00023 37.3 7.0 65 183-247 6-74 (304)
39 3g33_B CCND3 protein; Ser/Thr 71.9 4.6 0.00016 38.0 5.3 55 180-234 172-230 (306)
40 2r7g_A PP110, retinoblastoma-a 69.4 18 0.00061 35.0 8.9 69 179-247 218-289 (347)
41 4elj_A Retinoblastoma-associat 59.5 32 0.0011 36.0 9.1 69 179-247 527-598 (656)
42 4elj_A Retinoblastoma-associat 55.7 21 0.00071 37.4 7.0 64 183-247 8-76 (656)
43 1w98_B Cyclin E, G1/S-specific 49.0 24 0.00083 32.4 5.7 52 180-231 152-214 (283)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=6.6e-38 Score=292.35 Aligned_cols=189 Identities=29% Similarity=0.407 Sum_probs=172.1
Q ss_pred CCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHH
Q 019257 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA 225 (343)
Q Consensus 146 ~~~w~fS~eEl~~~tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaAC 225 (343)
.++|+||+|||+ .+||+.+||++++|..+|..+++||.++|..|+||+.|+++|++||||||.++++.++++++||+||
T Consensus 2 ~~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 367999999995 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHh
Q 019257 226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL 305 (343)
Q Consensus 226 LFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L 305 (343)
||||||+||.|+++++++.+++.+.++..... ...++.|+..+++|+.+|+.||++|+|+|.+.|||.||.++++.+
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~---~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 157 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPLL---DTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV 157 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCC---CTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCCCC---CcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence 99999999999999999999887765533210 123456877899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH-hccccccccCcceee
Q 019257 306 GLSQTVLVNLALNLVSEGY-QFGLDNFLFGWSISI 339 (343)
Q Consensus 306 ~l~k~~L~q~Aw~~lNDsl-rT~LcL~~~~~~i~~ 339 (343)
+.+++ +.+.||.+++|++ .+++|+.++|..|+.
T Consensus 158 ~~~~~-~~~~A~~~~~~sl~~~~~~l~~~Ps~IAa 191 (257)
T 2ivx_A 158 RASKD-LAQTSYFMATNSLHLTTFCLQYKPTVIAC 191 (257)
T ss_dssp TCCHH-HHHHHHHHHHHHHHHCCGGGTSCHHHHHH
T ss_pred CCCcH-HHHHHHHHHHhhhhcccHHHcCCHHHHHH
Confidence 99876 8999999999998 499999999988864
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=299.69 Aligned_cols=197 Identities=24% Similarity=0.341 Sum_probs=174.0
Q ss_pred cccccccccccccCCCCCCCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 019257 127 NIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHR 206 (343)
Q Consensus 127 ~~~~~~s~~~~~~~~~~~~~~~w~fS~eEl~~~tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhR 206 (343)
.++.|+|+++++ |+||++||....+.+.+|++.++|+.+|..+++||+++|.+|+||+.|++||++||||
T Consensus 4 ~~~~w~Ss~~~~----------Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~R 73 (285)
T 3rgf_B 4 AGNFWQSSHYLQ----------WILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKR 73 (285)
T ss_dssp TTCGGGSHHHHH----------HSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cchhhcccccCC----------cCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357899988864 9999999987655589999999999999999999999999999999999999999999
Q ss_pred HhccCCCCccchHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHc
Q 019257 207 FFVRRSHACHDRFIIATAALFLAAKSEETPR-PLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTL 285 (343)
Q Consensus 207 Fy~r~Sl~~~d~~lVAaACLFLA~KvEE~pr-kLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL 285 (343)
||+++++.++++++||+||||||||+||+++ .+++|+.++..+.+... .+..+ +.|+..+++|+.+|+.||++|
T Consensus 74 F~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~----~~~~~-~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 74 FYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF----SYAFP-KEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC----TTTCC-SCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc----cccCc-hhhHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 58999988776543211 11111 223346899999999999999
Q ss_pred CcccccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccccccccCcceee
Q 019257 286 NFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGLDNFLFGWSISI 339 (343)
Q Consensus 286 ~FdL~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~LcL~~~~~~i~~ 339 (343)
||+|.+.|||.+|.+|++.++.+++ +.+.||.+++|+++|++|+.++|..|+.
T Consensus 149 ~f~l~v~~P~~fL~~~~~~l~~~~~-~~~~A~~~l~~sl~t~~~l~~~Ps~IAa 201 (285)
T 3rgf_B 149 DCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIAL 201 (285)
T ss_dssp TTCCCCCCSHHHHHHHHHHHTCHHH-HHHHHHHHHHHHTTSSHHHHSCHHHHHH
T ss_pred CCCeEeCChHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHccChhhccCHHHHHH
Confidence 9999999999999999999998765 9999999999999999999999998874
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2e-36 Score=296.95 Aligned_cols=190 Identities=28% Similarity=0.396 Sum_probs=172.5
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHH
Q 019257 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (343)
Q Consensus 145 ~~~~w~fS~eEl~~~tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaA 224 (343)
...+|+||+|||+ .+||+.+||+.++|..+|..+++||.+++..|+||+.|+++|++||||||+++++.++++++|++|
T Consensus 8 ~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~a 86 (358)
T 2pk2_A 8 NNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPA 86 (358)
T ss_dssp CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred CCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 4578999999996 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHH
Q 019257 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (343)
Q Consensus 225 CLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~ 304 (343)
|||||||+||.++++++|+.+++.+.++....+ ....+.|+..+++|+.+|+.||++|+|+|.+.|||.||.+|++.
T Consensus 87 cLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~---~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~ 163 (358)
T 2pk2_A 87 ALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP---DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQL 163 (358)
T ss_dssp HHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCC---CTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhccccccc---cccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHH
Confidence 999999999999999999998877665432211 12345677778999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHH-hccccccccCcceee
Q 019257 305 LGLSQTVLVNLALNLVSEGY-QFGLDNFLFGWSISI 339 (343)
Q Consensus 305 L~l~k~~L~q~Aw~~lNDsl-rT~LcL~~~~~~i~~ 339 (343)
++.+++ +.++||.+++|++ .+++|+.++|..|+.
T Consensus 164 l~~~~~-l~~~A~~ll~~sl~~t~l~l~y~Ps~IAa 198 (358)
T 2pk2_A 164 VRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVAC 198 (358)
T ss_dssp TTCCHH-HHHHHHHHHHHHTTTSCGGGTSCHHHHTT
T ss_pred cCCCHH-HHHHHHHHHHHHHhcCcchhccCHHHHHH
Confidence 998876 9999999999998 589999999988875
No 4
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.4e-36 Score=277.35 Aligned_cols=187 Identities=26% Similarity=0.449 Sum_probs=167.3
Q ss_pred CCCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHH
Q 019257 144 EDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIAT 223 (343)
Q Consensus 144 ~~~~~w~fS~eEl~~~tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAa 223 (343)
+...+|+||+||+. .+||+.+||+++.|..+|..+++||.++|..|+||+.|+++|++|||||+.++++.+++.++||+
T Consensus 10 ~~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ 88 (258)
T 2i53_A 10 HTKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGA 88 (258)
T ss_dssp SCSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred hhccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHH
Confidence 34678999999995 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHH
Q 019257 224 AALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILN 303 (343)
Q Consensus 224 ACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~ 303 (343)
||||||||.||.++++++++.++..++..+.+.. ..+..+++|+.+|+.||++|+|++.+.|||.||.+|++
T Consensus 89 acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~ 160 (258)
T 2i53_A 89 CCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQ--------FGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAK 160 (258)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGG--------GCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHccccccccHHHHHHHHHHHhchhhhhh--------hhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHH
Confidence 9999999999999999999998765543221100 00124789999999999999999999999999999999
Q ss_pred HhCCChH---HHHHHHHHHHHHHHhccccccccCcceee
Q 019257 304 KLGLSQT---VLVNLALNLVSEGYQFGLDNFLFGWSISI 339 (343)
Q Consensus 304 ~L~l~k~---~L~q~Aw~~lNDslrT~LcL~~~~~~i~~ 339 (343)
.++.+.+ .+.+.||.+++|++++++|+-++|..|+.
T Consensus 161 ~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAa 199 (258)
T 2i53_A 161 QLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAV 199 (258)
T ss_dssp TBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHH
Confidence 9998863 58999999999999999999999988864
No 5
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=4.6e-34 Score=276.44 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=155.3
Q ss_pred cccccccccCCCCCCCCCccccH-HHHHHh------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 019257 131 STSMSCKRDRSKLEDDEPVFMSR-DEIERF------------------SPSRKDGIDALRETHLRYSYCAFIQNLGLRLE 191 (343)
Q Consensus 131 ~~s~~~~~~~~~~~~~~~w~fS~-eEl~~~------------------tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~Lk 191 (343)
|+|++++ .|+||+ ++|... .++..+||++++|..+|..++.||+++|..|+
T Consensus 3 ~~Stq~~----------~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~ 72 (323)
T 1jkw_A 3 HNSSQKR----------HWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFK 72 (323)
T ss_dssp ------------------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCcccc----------ccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6676664 599995 777532 36789999999999999999999999999999
Q ss_pred --CChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhHHHH
Q 019257 192 --LPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269 (343)
Q Consensus 192 --Lpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~ 269 (343)
||+.|++||++||||||+++++.++++++||+||||||||+||+++++++++.+.. .+ | .....
T Consensus 73 ~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-----~~--------p-~~~~~ 138 (323)
T 1jkw_A 73 PAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-----ES--------P-LGQEK 138 (323)
T ss_dssp TTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS-----SC--------H-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc-----cC--------h-hhhHH
Confidence 99999999999999999999999999999999999999999999999999875321 00 1 11224
Q ss_pred hHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHh-----CCC-hHHHHHHHHHHHHHHHhccccccccCcceee
Q 019257 270 YRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL-----GLS-QTVLVNLALNLVSEGYQFGLDNFLFGWSISI 339 (343)
Q Consensus 270 ~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L-----~l~-k~~L~q~Aw~~lNDslrT~LcL~~~~~~i~~ 339 (343)
.+++|+.+|+.||++|+|+|.+.|||.+|..|+..+ ++. .+.+.+.||.+++|+++|++|+.++|..|+.
T Consensus 139 ~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAa 214 (323)
T 1jkw_A 139 ALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIAL 214 (323)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHH
Confidence 689999999999999999999999999999999876 333 2458999999999999999999999998874
No 6
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=266.94 Aligned_cols=176 Identities=22% Similarity=0.336 Sum_probs=156.5
Q ss_pred cccccccccCCCCCCCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcc
Q 019257 131 STSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR 210 (343)
Q Consensus 131 ~~s~~~~~~~~~~~~~~~w~fS~eEl~~~tPS~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r 210 (343)
|+|++|+ +|+||+|||+ .+|+..+| | |..+++||.++|..|+||+.|+++|++||||||++
T Consensus 2 ~~Ss~~~----------~w~ft~~~l~-~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~ 62 (235)
T 1zp2_A 2 WASSQLT----------QLFLSTDLES-LEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLK 62 (235)
T ss_dssp CCCGGGT----------GGGSCSSCTT-SSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCC----------CCccCHHHHH-HCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 7777775 4999999997 56766543 2 89999999999999999999999999999999999
Q ss_pred CCCCc-cchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCccc
Q 019257 211 RSHAC-HDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFEL 289 (343)
Q Consensus 211 ~Sl~~-~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL 289 (343)
+++.+ +++++|++||||||||+||+|+++++++.++..+... .+...+++|+.+|+.||++|+|++
T Consensus 63 ~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~-------------~~~~~~~~I~~~E~~iL~~L~f~l 129 (235)
T 1zp2_A 63 KNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL-------------KVKLSRSNISEIEFEIISVLDAFL 129 (235)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC-------------SSCCCHHHHHHHHHHHHHHTTTCC
T ss_pred cccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc-------------hhhccHHHHHHHHHHHHHHCCCcE
Confidence 99999 9999999999999999999999999999887654310 112257899999999999999999
Q ss_pred ccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccccccccCcceee
Q 019257 290 NVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGLDNFLFGWSISI 339 (343)
Q Consensus 290 ~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~LcL~~~~~~i~~ 339 (343)
.+.+|+.+|.+|+++++++++ +.+.||.+++|++++++|+-++|..|+.
T Consensus 130 ~~~~P~~~l~~~~~~~~~~~~-~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 130 IVHHPYTSLEQAFHDGIINQK-QLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp CCCCTHHHHHHHHHTTSSCHH-HHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred EecChHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 999999999999999998876 8999999999999999999999988863
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=4.2e-26 Score=206.15 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 019257 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (343)
Q Consensus 177 ~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~ 256 (343)
..|+++|+++|..|+||+.|++||++|||||+..+++++++++.|++||||||||.||.|++++||+.++..
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~-------- 77 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRI-------- 77 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSS--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCC--------
Confidence 459999999999999999999999999999999999999999999999999999999999999999876430
Q ss_pred hhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccccccccCcc
Q 019257 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGLDNFLFGWS 336 (343)
Q Consensus 257 ~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~LcL~~~~~~ 336 (343)
.+++|..+|+.||++|+|++.+.||+.+|.+|++.++++++ +.+.||.++++++.+.+|+-+.|..
T Consensus 78 -------------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~~~~~~l~~g~~P~~ 143 (207)
T 1c9b_A 78 -------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARKAVELDLVPGRSPIS 143 (207)
T ss_dssp -------------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTCSTTCCHHH
T ss_pred -------------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCccCCCChHH
Confidence 24678899999999999999999999999999999999886 8999999999999999999998887
Q ss_pred ee
Q 019257 337 IS 338 (343)
Q Consensus 337 i~ 338 (343)
|+
T Consensus 144 IA 145 (207)
T 1c9b_A 144 VA 145 (207)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.89 E-value=3.5e-23 Score=194.83 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHHHHHH
Q 019257 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSEL 249 (343)
Q Consensus 171 ~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v~~~l 249 (343)
.....|...++||.+++..++|++.|+.+|+.||+||+.++++.+.+.++|++||||||||.||. ++++++++..+..
T Consensus 33 i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~- 111 (269)
T 2b9r_A 33 VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN- 111 (269)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC-
Confidence 34478999999999999999999999999999999999999999999999999999999999998 7889999865321
Q ss_pred hhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcccc
Q 019257 250 YHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGLD 329 (343)
Q Consensus 250 ~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~Lc 329 (343)
.| .+++|+++|+.||++|+|++.+.+|+.||..+++.++.+.+ +.+.||.++++++.+..+
T Consensus 112 ----------------~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~-~~~~a~~l~e~sl~~~~~ 172 (269)
T 2b9r_A 112 ----------------TY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVE-QHTLAKYLMELTMLDYDM 172 (269)
T ss_dssp ----------------SS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHH-HHHHHHHHHHHGGGCGGG
T ss_pred ----------------CC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhhhh
Confidence 12 47899999999999999999999999999999999988775 889999999999999999
Q ss_pred ccccCcceee
Q 019257 330 NFLFGWSISI 339 (343)
Q Consensus 330 L~~~~~~i~~ 339 (343)
+-++|-+|+.
T Consensus 173 ~~~~Ps~iAa 182 (269)
T 2b9r_A 173 VHFPPSQIAA 182 (269)
T ss_dssp SSSCTTHHHH
T ss_pred hcCCHHHHHH
Confidence 9999887763
No 9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=199.85 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=139.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHH
Q 019257 163 RKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLND 241 (343)
Q Consensus 163 ~~dGIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrd 241 (343)
-.+|+..+.+..+|...++||.+++..++|++.|+++|+.||+||+.++++.+.+.++||+||||||||.||. +.++++
T Consensus 58 y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~ 137 (306)
T 3g33_B 58 YFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEK 137 (306)
T ss_dssp CTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTH
T ss_pred HHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 4566777777789999999999999999999999999999999999999999999999999999999999986 668888
Q ss_pred HHHHHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChH---HHHHHHHH
Q 019257 242 VLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALN 318 (343)
Q Consensus 242 VI~v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~---~L~q~Aw~ 318 (343)
++..+.. .| .+++|++||+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.||.
T Consensus 138 l~~~~~~-----------------~~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~ 198 (306)
T 3g33_B 138 LCIYTDH-----------------AV--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQT 198 (306)
T ss_dssp HHHHTTT-----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHH
T ss_pred HHHHhcc-----------------Cc--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 8765321 11 36889999999999999999999999999999999987642 36789999
Q ss_pred HHHHHHhccccccccCcceee
Q 019257 319 LVSEGYQFGLDNFLFGWSISI 339 (343)
Q Consensus 319 ~lNDslrT~LcL~~~~~~i~~ 339 (343)
++++++++..++-|.|-.|+.
T Consensus 199 ~l~lsl~d~~~l~~~PS~IAa 219 (306)
T 3g33_B 199 FLALCATDYTFAMYPPSMIAT 219 (306)
T ss_dssp HHHHHHHCGGGTTSCHHHHHH
T ss_pred HHHHHHhhhhhccCCHHHHHH
Confidence 999999999999998887763
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.89 E-value=3.5e-23 Score=193.66 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHHHHHHh
Q 019257 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSELY 250 (343)
Q Consensus 172 E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v~~~l~ 250 (343)
...+|...++||.+++..++|++.|+++|+.|++||+.+.++.+.+.++||+||||||||.||. ++++++++.++..
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~-- 112 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD-- 112 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--
Confidence 3467999999999999999999999999999999999999999999999999999999999999 8999999875321
Q ss_pred hhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccc-c
Q 019257 251 HKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGL-D 329 (343)
Q Consensus 251 ~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~L-c 329 (343)
.| .+++|+++|+.||++|+|++.+.+|+.||..|++.++.+...+.+.||.++++++.... +
T Consensus 113 ---------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~ 175 (260)
T 2cch_B 113 ---------------TY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 175 (260)
T ss_dssp ---------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---------------Cc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 12 47899999999999999999999999999999999998764589999999999987776 8
Q ss_pred ccccCccee
Q 019257 330 NFLFGWSIS 338 (343)
Q Consensus 330 L~~~~~~i~ 338 (343)
+-+.|-+|+
T Consensus 176 ~~~~Ps~iA 184 (260)
T 2cch_B 176 LKYLPSVIA 184 (260)
T ss_dssp TTSCHHHHH
T ss_pred hCCCHHHHH
Confidence 888877765
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.88 E-value=3.7e-23 Score=194.56 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHHH
Q 019257 168 DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRAS 246 (343)
Q Consensus 168 s~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v~ 246 (343)
..+-....|...++||.+++..+++++.|+++|+.|++||+.+.++.+.+.++||+||||||||.||. |+++++++..+
T Consensus 49 q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~ 128 (271)
T 2w96_A 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYT 128 (271)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHh
Confidence 33334578999999999999999999999999999999999999999999999999999999999998 99999987643
Q ss_pred HHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChHH---HHHHHHHHHHHH
Q 019257 247 SELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTV---LVNLALNLVSEG 323 (343)
Q Consensus 247 ~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~~---L~q~Aw~~lNDs 323 (343)
.. .| .+++|+.||+.||++|+|++.+.+|+.||..|++.++.+.+. +.+.||.+++++
T Consensus 129 ~~-----------------~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~ 189 (271)
T 2w96_A 129 DN-----------------SI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALC 189 (271)
T ss_dssp TT-----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cC-----------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 21 12 478999999999999999999999999999999999987642 357899999999
Q ss_pred HhccccccccCccee
Q 019257 324 YQFGLDNFLFGWSIS 338 (343)
Q Consensus 324 lrT~LcL~~~~~~i~ 338 (343)
+....++-+.|-.|+
T Consensus 190 ~~d~~~~~~~PS~iA 204 (271)
T 2w96_A 190 ATDVKFISNPPSMVA 204 (271)
T ss_dssp HTSTHHHHSCHHHHH
T ss_pred HhhhhhhccCHHHHH
Confidence 887778878777665
No 12
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.88 E-value=2.4e-22 Score=187.69 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHHHH
Q 019257 169 ALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASS 247 (343)
Q Consensus 169 ~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v~~ 247 (343)
++.....|...++||.+++..++|++.|+++|+.|++||+.++++.+.+.++||+||||||||.||. |+++++++..+.
T Consensus 44 ~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 123 (257)
T 1g3n_C 44 QSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA 123 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC
Confidence 3344578999999999999999999999999999999999999999999999999999999999997 889999886532
Q ss_pred HHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChH---HHHHHHHHHHHHHH
Q 019257 248 ELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVSEGY 324 (343)
Q Consensus 248 ~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~---~L~q~Aw~~lNDsl 324 (343)
. .| .+++|++||+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.|+.++++++
T Consensus 124 ~-----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l 184 (257)
T 1g3n_C 124 D-----------------SF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKAL 184 (257)
T ss_dssp T-----------------CS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHH
T ss_pred C-----------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 1 12 37889999999999999999999999999999999988653 35678999999999
Q ss_pred hccccccccCccee
Q 019257 325 QFGLDNFLFGWSIS 338 (343)
Q Consensus 325 rT~LcL~~~~~~i~ 338 (343)
....|+-+.|-.|+
T Consensus 185 ~d~~~~~~~PS~iA 198 (257)
T 1g3n_C 185 VDPLTGSLPASIIS 198 (257)
T ss_dssp TSTTGGGSCHHHHH
T ss_pred hCcchhCcCHHHHH
Confidence 99989888887765
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.87 E-value=2.3e-22 Score=187.44 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHH
Q 019257 167 IDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRA 245 (343)
Q Consensus 167 Is~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v 245 (343)
..++.....|...++||.+++..++|++.|+.+|+.|++||+.++++.+.+.+++|+||||||||.||. |+++++++..
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 344455678999999999999999999999999999999999999999999999999999999999995 8889887653
Q ss_pred HHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChH---HHHHHHHHHHHH
Q 019257 246 SSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVSE 322 (343)
Q Consensus 246 ~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~---~L~q~Aw~~lND 322 (343)
+.. .| .+++|++||+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.|+.+++.
T Consensus 123 ~~~-----------------~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~ 183 (254)
T 2f2c_A 123 SCD-----------------CF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICK 183 (254)
T ss_dssp C--------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred hCC-----------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Confidence 221 12 47899999999999999999999999999999999998764 246789999999
Q ss_pred HHhccccccccCccee
Q 019257 323 GYQFGLDNFLFGWSIS 338 (343)
Q Consensus 323 slrT~LcL~~~~~~i~ 338 (343)
++....|+-+.|-.|+
T Consensus 184 ~l~d~~~~~~~PS~iA 199 (254)
T 2f2c_A 184 ALIQPNIALLSPGLIC 199 (254)
T ss_dssp HTTSGGGTTSCHHHHH
T ss_pred HHcCcchhccCHHHHH
Confidence 9999888888887765
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.87 E-value=1.1e-21 Score=176.18 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHh
Q 019257 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELY 250 (343)
Q Consensus 171 ~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~ 250 (343)
.|+.++ .++++|.++|..|+||+.++.+|+.||+||+..+.+.+.++..||+||||+|||.||.|++++||+.++..
T Consensus 5 ~er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v-- 81 (200)
T 1ais_B 5 AERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV-- 81 (200)
T ss_dssp ---CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS--
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC--
Confidence 466665 59999999999999999999999999999999999999999999999999999999999999999986431
Q ss_pred hhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCccccc--CCchHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccc
Q 019257 251 HKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV--QHPYDPLTSILNKLGLSQTVLVNLALNLVSEGYQFGL 328 (343)
Q Consensus 251 ~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V--~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDslrT~L 328 (343)
.+++|..+|+.|++.|||++.+ .+|+.||.+|+..|+++++ +.+.||.+++++.++.+
T Consensus 82 -------------------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~~~~~~~ 141 (200)
T 1ais_B 82 -------------------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDEAYKRGL 141 (200)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCc
Confidence 2567999999999999999999 9999999999999999986 89999999999999988
Q ss_pred cccccCcce
Q 019257 329 DNFLFGWSI 337 (343)
Q Consensus 329 cL~~~~~~i 337 (343)
+.=..|..|
T Consensus 142 ~~gr~P~~i 150 (200)
T 1ais_B 142 TSGKSPAGL 150 (200)
T ss_dssp CTTSCHHHH
T ss_pred ccCCCHHHH
Confidence 766655554
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.82 E-value=5.4e-20 Score=172.41 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC-CCChHHHHH
Q 019257 166 GIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLR 244 (343)
Q Consensus 166 GIs~e~E~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~ 244 (343)
++..+.....|...++||.+++..++|.+.|+..|+.|++||+.++++...+.++||+||||||+|.||. |.++++++.
T Consensus 39 ~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 39 NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3344555678999999999999999999999999999999999999999999999999999999999997 678888876
Q ss_pred HHHHHhhhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChH---HHHHHHHHHHH
Q 019257 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVS 321 (343)
Q Consensus 245 v~~~l~~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~---~L~q~Aw~~lN 321 (343)
.+.. .| .+++|++||+.||++|+|++.+.+|+.||..|++.++.+.+ .+...|+.++.
T Consensus 119 ~~~~-----------------~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~ 179 (252)
T 1f5q_B 119 LCGG-----------------AT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIF 179 (252)
T ss_dssp HHCT-----------------TC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCC-----------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 4321 12 36889999999999999999999999999999999988764 35678888888
Q ss_pred HHHhccccccccCccee
Q 019257 322 EGYQFGLDNFLFGWSIS 338 (343)
Q Consensus 322 DslrT~LcL~~~~~~i~ 338 (343)
.++...-++-+.|-.|+
T Consensus 180 ~~l~d~~~l~~~PS~iA 196 (252)
T 1f5q_B 180 CALCDGRSAMKRPVLIT 196 (252)
T ss_dssp HHHHCHHHHTSCHHHHH
T ss_pred HHHhchhhhccCHHHHH
Confidence 88776666666665554
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.82 E-value=7.4e-20 Score=173.59 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcc-CCCCccchHHHHHHHHHHhhccCCC-CCChHHHHHHHHHHh
Q 019257 173 THLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR-RSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSELY 250 (343)
Q Consensus 173 ~~lR~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r-~Sl~~~d~~lVAaACLFLA~KvEE~-prkLrdVI~v~~~l~ 250 (343)
...|...++||.+++..++|++.|+++|+.|++||+.+ +++.+.+.++||+||||||||.||. ++++++++.++..
T Consensus 47 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~-- 124 (283)
T 1w98_B 47 PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG-- 124 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC--
Confidence 36899999999999999999999999999999999998 6899999999999999999999998 8889998864321
Q ss_pred hhhchhhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHHhCCChH----------HHHHHHHHHH
Q 019257 251 HKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT----------VLVNLALNLV 320 (343)
Q Consensus 251 ~k~~~~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~L~l~k~----------~L~q~Aw~~l 320 (343)
.| .+++|+.||+.||++|+|++.+.+|+.||..|++.++.++. .....|..++
T Consensus 125 ---------------~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 187 (283)
T 1w98_B 125 ---------------AC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELL 187 (283)
T ss_dssp ---------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHH
T ss_pred ---------------CC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHH
Confidence 12 47899999999999999999999999999999999876431 1233456688
Q ss_pred HHHHhccccccccCccee
Q 019257 321 SEGYQFGLDNFLFGWSIS 338 (343)
Q Consensus 321 NDslrT~LcL~~~~~~i~ 338 (343)
+.++....|+-+.|-.|+
T Consensus 188 elsl~d~~~l~~~PS~iA 205 (283)
T 1w98_B 188 DLCVLDVDCLEFPYGILA 205 (283)
T ss_dssp HHHHHSGGGGGSCHHHHH
T ss_pred HHHHhhhhhhcCCHHHHH
Confidence 888888888888877665
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.4e-20 Score=177.62 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 019257 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (343)
Q Consensus 177 ~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~ 256 (343)
..++..|.++|..|+||+.++.+|+.||+||+..+++++.+...|++||||+|||.|+.|++++||+.++..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v-------- 198 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-------- 198 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCC--------
Confidence 358999999999999999999999999999999999999999999999999999999999999999876431
Q ss_pred hhcccCChhHHHHhHHHHHHHHHHHHHHcC------------cccccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 019257 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLN------------FELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGY 324 (343)
Q Consensus 257 ~~~~~~p~~~ye~~re~Il~~E~~IL~tL~------------FdL~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDsl 324 (343)
.+++|..+++.|++.|+ |++.+.+|+.||.+|+..|+++.+ +.+.||.+++++.
T Consensus 199 -------------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~~A~~i~~~~~ 264 (345)
T 3k7a_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCK 264 (345)
T ss_dssp -------------CSHHHHHHHHHHHHHHTCC------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHH
Confidence 23568888888888888 999999999999999999999876 8999999999999
Q ss_pred hccccccccCccee
Q 019257 325 QFGLDNFLFGWSIS 338 (343)
Q Consensus 325 rT~LcL~~~~~~i~ 338 (343)
++.++.-..|.+|+
T Consensus 265 ~~~l~~Gr~P~~IA 278 (345)
T 3k7a_M 265 EIKEIAGKSPITIA 278 (345)
T ss_dssp --------------
T ss_pred HhchhcCCCHHHHH
Confidence 99998888887775
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.51 E-value=2.1e-14 Score=140.18 Aligned_cols=131 Identities=12% Similarity=0.064 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 019257 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (343)
Q Consensus 177 ~~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~ 256 (343)
..+...|.++|..|+||+.++.+|..+|++++..+.+++.....|++||||+|||.++.|++++||..++..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v-------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC--------
Confidence 458899999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred hhcccCChhHHHHhHHHHHHHHHHHHHHcCcc------------cccCCchHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 019257 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFE------------LNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGY 324 (343)
Q Consensus 257 ~~~~~~p~~~ye~~re~Il~~E~~IL~tL~Fd------------L~V~hP~~~L~~~l~~L~l~k~~L~q~Aw~~lNDsl 324 (343)
.+++|....+.|++.|+.. +.+.+|..||.+|+..|+++.+ +.+.|+.++.++.
T Consensus 199 -------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~ 264 (345)
T 4bbr_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCK 264 (345)
T ss_dssp -------------CTTHHHHHHHHHHHCC---------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHH
Confidence 1345777888888888864 6778999999999999999876 8899999999887
Q ss_pred hcccc
Q 019257 325 QFGLD 329 (343)
Q Consensus 325 rT~Lc 329 (343)
+..++
T Consensus 265 ~~~i~ 269 (345)
T 4bbr_M 265 EIKEI 269 (345)
T ss_dssp -----
T ss_pred hcccc
Confidence 76543
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.09 E-value=1.2e-05 Score=71.44 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhc
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLS 259 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~~l~~k~~~~~~~ 259 (343)
..||.+++..|+|+..+..+|..++.+.....-+.++.|..||+||||+||+..+.++..++|..++..
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 478999999999999999999999999998877889999999999999999999999999999876541
Q ss_pred ccCChhHHHHhHHHHHHHHHHHHHHcCccc
Q 019257 260 YLLPIDWFEQYRERVIEAEQMILTTLNFEL 289 (343)
Q Consensus 260 ~~~p~~~ye~~re~Il~~E~~IL~tL~FdL 289 (343)
....|-..-..|.+.||.++
T Consensus 178 ----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 ----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp ----------CHHHHHHHHHHHHHHHTCCC
T ss_pred ----------CHHHHHHHHHHHHHHcCCCC
Confidence 12345556666677777654
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.62 E-value=0.00018 Score=64.20 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~ 246 (343)
..+|.+.+..|+++..+..+|..++.+-....-+.++.|..||+||||+||+..+.++..++|..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 5789999999999999999999999998887777899999999999999999999999999887654
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=96.99 E-value=0.0029 Score=60.35 Aligned_cols=103 Identities=9% Similarity=0.006 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccC---CCCccchHHHHHHHHHHhhccCC-CCCChHHHHHHHHHHhhhhch
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEE-TPRPLNDVLRASSELYHKQNI 255 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~---Sl~~~d~~lVAaACLFLA~KvEE-~prkLrdVI~v~~~l~~k~~~ 255 (343)
.+||.++...-+++..++..|.+|++|+-.+. .+.....+-+.++||.||+|.-+ ..-.-+...++. ++
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-------Gi 150 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-------GV 150 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-------TS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc-------Cc
Confidence 35888888899999999999999999998753 23456778889999999999654 333333222221 10
Q ss_pred hhhcccCChhHHHHhHHHHHHHHHHHHHHcCcccccCCchHHHHHHHHH
Q 019257 256 TLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (343)
Q Consensus 256 ~~~~~~~p~~~ye~~re~Il~~E~~IL~tL~FdL~V~hP~~~L~~~l~~ 304 (343)
-.++|-.+|+..|..|+|+|.|. +..+...+++.
T Consensus 151 --------------sl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 151 --------------RCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp --------------CHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred --------------CHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 25779999999999999999876 44454444444
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0013 Score=63.57 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
..||.+.+..|+|+..+..+|..++.+.....-+.++.|..||+||||||++..+..++.++|..++.
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~ 303 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Confidence 57888999999999999999999999887766667889999999999999999887777777776553
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.74 E-value=0.0017 Score=63.06 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 178 SYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 178 ~~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
....||.++|..|+|+..+.-+|..++++.-...-..+..|..||+||||+||+..+..++.++|..++.
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 3457999999999999999999999998887765567888999999999999999988888888887654
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.26 E-value=0.076 Score=47.98 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
..||...+..++++..+...|..++..-+....+..+.|..||+|||++|++..+.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 46788888889999999999999999988777788999999999999999997653
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.30 E-value=0.1 Score=48.77 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
..+|...+..|+++..+...|..++..-+....+..|.|..||+||||||++..+.
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 36888889999999999999999998887766677899999999999999997664
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.76 E-value=0.24 Score=44.97 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCh----hHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC
Q 019257 180 CAFIQNLGLRLELPQ----TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq----~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
..||...+..|+.+. .+...|..++..-+....+..|.|..||+|||++|++..+.
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 468888899999886 57788888888888777778899999999999999997654
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.93 E-value=0.49 Score=43.03 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhc-cCCCCccchHHHHHHHHHHhhccCCC
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~-r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
..||...+..++.+..+...|..++..-.. ..-+..|.|..||+|||+||++..+.
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 203 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNW 203 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 468888888999998888888888766553 33357799999999999999997543
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=89.44 E-value=0.45 Score=43.88 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCC
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETP 236 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~p 236 (343)
..||...+..++++..+...|..++..-.....+..+.|..||+|||++|++.-+..
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 478888889999998888888888887777777888999999999999999876543
No 29
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=88.52 E-value=2.5 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhccCC-----CCccchHHHHHHHHHHhhccCCCCCChHHHH
Q 019257 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS-----HACHDRFIIATAALFLAAKSEETPRPLNDVL 243 (343)
Q Consensus 183 I~~lg~~LkLpq~tiaTA~vyfhRFy~r~S-----l~~~d~~lVAaACLFLA~KvEE~prkLrdVI 243 (343)
|.++|..|++++ ++-.|..++.+|=..-+ -.+++.-..++||+|+|||..-....=..++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~ 70 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMV 70 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHH
Confidence 679999999988 77778899999964211 1256666789999999999877654433344
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=85.54 E-value=3.3 Score=37.54 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCChhHH----HHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccC
Q 019257 180 CAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~ti----aTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvE 233 (343)
..||......++++..+. ..|..++.--..-..+..|.|..||+||+++|.+..
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 367888888888887653 345555554444555678999999999999999985
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=85.45 E-value=1.2 Score=40.54 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCh-hHHHHHHHHHHHHhccCC-CCccchHHHHHHHHHHhhccCCCC
Q 019257 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVRRS-HACHDRFIIATAALFLAAKSEETP 236 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq-~tiaTA~vyfhRFy~r~S-l~~~d~~lVAaACLFLA~KvEE~p 236 (343)
...||...+..++++. .+...|..++..-..... +..+.|..||+|||++|++.-+.+
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~ 198 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQ 198 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 3578899999999886 666667666665443444 677899999999999999865543
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.88 E-value=0.68 Score=44.79 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhc-cCCCCccchHHHHHHHHHHhhccCCC
Q 019257 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~-r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
..||..+...|+++..+..+|..++..-+. ..-+..|.|..||+||||||++..+.
T Consensus 154 ~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~ 210 (358)
T 2pk2_A 154 HTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW 210 (358)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCC
Confidence 357778888889988888888888776653 33356799999999999999997654
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=83.32 E-value=3.9 Score=37.24 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhccC---CCCccchHHHHHHHHHHhhccCCCCCChHHHH
Q 019257 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEETPRPLNDVL 243 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq~tiaTA~vyfhRFy~r~---Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI 243 (343)
+.+-|+.+.+.-++|..++.-|+-+.+.|.-.+ -..--.++.||+||+.+|+--...|.++.++.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 344568888999999999999999999996532 22233588999999999998878888877653
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=82.63 E-value=2.2 Score=38.80 Aligned_cols=56 Identities=16% Similarity=0.007 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCChhH----HHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCC
Q 019257 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq~t----iaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE 234 (343)
...||......++++..+ ...|..++.--.....+..|.|..||+|||++|.+..+
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhC
Confidence 357888888888887654 33455666555555667889999999999999998765
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=79.72 E-value=1.8 Score=41.09 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCC
Q 019257 191 ELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (343)
Q Consensus 191 kLpq~tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~ 235 (343)
+.+..+...|..++..-+....+-.|.|..||+||||+|++..+.
T Consensus 182 ~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~ 226 (323)
T 1jkw_A 182 ENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI 226 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 344566677888888776665566799999999999999987553
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=75.86 E-value=2.8 Score=38.39 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCChhHH----HHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccC
Q 019257 179 YCAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq~ti----aTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvE 233 (343)
...||..+...++++..+. ..|..++.--..-..+..|.|..||+|||++|++.-
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 3578888888888887653 235455443333334567899999999999998743
No 37
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=75.45 E-value=11 Score=37.44 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCh-h---HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 179 YCAFIQNLGLRLELPQ-T---TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq-~---tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
+..-|+++|.+|++++ . -++|+..+.=. ....-|.+.+..-|.+.|+|.-||+.....+.++|+..+.
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~-~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQ-NEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-HCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-hhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 5667999999999876 2 35554432221 1223456666777999999999999998899999998654
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=74.00 E-value=6.6 Score=37.32 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhccCC---CCccchHHHHHHHHHHhhc-cCCCCCChHHHHHHHH
Q 019257 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAK-SEETPRPLNDVLRASS 247 (343)
Q Consensus 183 I~~lg~~LkLpq~tiaTA~vyfhRFy~r~S---l~~~d~~lVAaACLFLA~K-vEE~prkLrdVI~v~~ 247 (343)
..++|+.|+|+..|...|...|++.-..-+ -..-+....-.||||.||. +++...++..|++.+.
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 357899999999999999999999766411 1122344556667999997 5566899999888763
No 39
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=71.93 E-value=4.6 Score=37.96 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCChhH----HHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhccCC
Q 019257 180 CAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~t----iaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~KvEE 234 (343)
..||..+...++++... ...|..++.--.....+..|.|..||+|||++|.+.-+
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 35777888888877542 34455555555555667789999999999999998765
No 40
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=69.43 E-value=18 Score=35.00 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCChh-HHHHHHHHHHHHhc--cCCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 179 YCAFIQNLGLRLELPQT-TIGTAMVLCHRFFV--RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq~-tiaTA~vyfhRFy~--r~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
+..-|+++|.+|+++.. +.....+.|..... ..-|.+.+..-+.+.|+|.-||+.....+.++|+..+.
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45669999999987763 43334444444443 23456667777999999999999988899999998643
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=59.51 E-value=32 Score=36.02 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCChh-HHHHHHHHHHHHhcc--CCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 179 YCAFIQNLGLRLELPQT-TIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 179 ~~~~I~~lg~~LkLpq~-tiaTA~vyfhRFy~r--~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
+..-|+++|.+|++++. +....-++|+..... .-|.+.+.--|.+.|+|.-||+.....+.++|+..+.
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 56779999999988753 333344444444332 3456667777999999999999998899999998754
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=55.70 E-value=21 Score=37.44 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhcc-----CCCCccchHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 019257 183 IQNLGLRLELPQTTIGTAMVLCHRFFVR-----RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (343)
Q Consensus 183 I~~lg~~LkLpq~tiaTA~vyfhRFy~r-----~Sl~~~d~~lVAaACLFLA~KvEE~prkLrdVI~v~~ 247 (343)
..++|+.|+++..|...|...|..-... .++.+-..+..|. ++|.||.+|+...++..|+..+.
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHhc
Confidence 4578999999999999999999998842 3344444444444 47777788999999999988764
No 43
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=48.99 E-value=24 Score=32.40 Aligned_cols=52 Identities=12% Similarity=-0.021 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCChh-----------HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhc
Q 019257 180 CAFIQNLGLRLELPQT-----------TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231 (343)
Q Consensus 180 ~~~I~~lg~~LkLpq~-----------tiaTA~vyfhRFy~r~Sl~~~d~~lVAaACLFLA~K 231 (343)
..||......++++.. +...|..++.--.....+..|.|..||+|||++|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 4577777766665432 122233344433334456789999999999999984
Done!