Query 019258
Match_columns 343
No_of_seqs 252 out of 2607
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-40 2.4E-45 282.6 19.9 278 16-341 173-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 8.7E-38 1.9E-42 262.2 25.2 280 16-341 113-437 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1E-37 2.2E-42 261.8 24.3 279 16-342 155-480 (480)
4 KOG0284 Polyadenylation factor 100.0 1.2E-37 2.6E-42 263.2 17.5 276 20-343 98-380 (464)
5 KOG0279 G protein beta subunit 100.0 8.4E-35 1.8E-39 235.1 28.5 279 16-341 13-311 (315)
6 KOG0286 G-protein beta subunit 100.0 1.6E-34 3.4E-39 234.9 28.7 281 16-341 53-343 (343)
7 KOG0277 Peroxisomal targeting 100.0 4E-35 8.6E-40 234.1 22.1 285 21-341 11-307 (311)
8 KOG0273 Beta-transducin family 100.0 2.2E-34 4.8E-39 247.5 27.9 291 15-343 175-482 (524)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-35 3.9E-40 251.0 18.6 242 15-301 214-459 (459)
10 KOG0273 Beta-transducin family 100.0 1.6E-32 3.4E-37 236.1 28.0 278 15-341 232-521 (524)
11 KOG0645 WD40 repeat protein [G 100.0 9.8E-32 2.1E-36 216.6 29.2 281 16-341 12-309 (312)
12 KOG0315 G-protein beta subunit 100.0 1.7E-32 3.6E-37 218.5 24.4 266 33-341 9-286 (311)
13 KOG0313 Microtubule binding pr 100.0 1.1E-32 2.4E-37 231.3 24.3 288 9-342 96-417 (423)
14 KOG0276 Vesicle coat complex C 100.0 2.7E-32 5.8E-37 241.9 25.6 276 16-339 11-295 (794)
15 KOG0279 G protein beta subunit 100.0 8.7E-32 1.9E-36 217.7 24.0 240 68-341 12-260 (315)
16 PLN00181 protein SPA1-RELATED; 100.0 2.8E-30 6.1E-35 255.0 36.7 279 16-341 481-791 (793)
17 KOG0263 Transcription initiati 100.0 5.4E-32 1.2E-36 246.1 20.9 241 16-302 376-649 (707)
18 KOG0265 U5 snRNP-specific prot 100.0 1.1E-30 2.4E-35 213.3 25.0 285 9-339 38-334 (338)
19 KOG0286 G-protein beta subunit 100.0 2E-30 4.3E-35 211.1 26.1 238 68-341 52-301 (343)
20 KOG0284 Polyadenylation factor 100.0 2.1E-32 4.6E-37 231.5 15.1 244 13-303 133-381 (464)
21 KOG0285 Pleiotropic regulator 100.0 1.3E-30 2.8E-35 217.5 24.5 274 17-342 150-438 (460)
22 KOG0264 Nucleosome remodeling 100.0 4.4E-31 9.5E-36 226.6 20.1 265 12-303 118-405 (422)
23 KOG0264 Nucleosome remodeling 100.0 7E-31 1.5E-35 225.3 20.3 246 68-341 121-402 (422)
24 KOG0295 WD40 repeat-containing 100.0 5.2E-30 1.1E-34 214.2 24.4 278 17-342 107-405 (406)
25 KOG0277 Peroxisomal targeting 100.0 8.2E-31 1.8E-35 209.5 18.6 249 11-301 53-308 (311)
26 cd00200 WD40 WD40 domain, foun 100.0 1E-28 2.2E-33 213.9 33.2 277 16-341 7-289 (289)
27 KOG0647 mRNA export protein (c 100.0 4.8E-29 1E-33 203.9 25.2 290 16-343 25-325 (347)
28 KOG0266 WD40 repeat-containing 100.0 1.8E-28 4E-33 226.5 32.4 278 18-342 159-453 (456)
29 KOG0285 Pleiotropic regulator 100.0 1E-29 2.3E-34 212.1 20.7 233 69-341 149-387 (460)
30 KOG0268 Sof1-like rRNA process 100.0 3.9E-30 8.5E-35 214.9 16.4 275 15-342 63-344 (433)
31 KOG0313 Microtubule binding pr 100.0 3.2E-29 7E-34 210.6 21.4 250 16-302 142-418 (423)
32 KOG0319 WD40-repeat-containing 100.0 6E-29 1.3E-33 224.6 24.2 280 17-341 322-617 (775)
33 KOG0315 G-protein beta subunit 100.0 3E-28 6.6E-33 194.3 25.0 247 13-303 34-289 (311)
34 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.4E-33 213.4 24.3 275 17-340 25-306 (487)
35 KOG0291 WD40-repeat-containing 100.0 7.3E-28 1.6E-32 218.0 30.2 285 12-343 300-612 (893)
36 KOG0263 Transcription initiati 100.0 3.2E-29 7E-34 228.1 21.1 237 71-342 378-648 (707)
37 KOG0645 WD40 repeat protein [G 100.0 2.1E-28 4.5E-33 197.4 23.0 244 16-301 59-310 (312)
38 KOG0296 Angio-associated migra 100.0 6.6E-28 1.4E-32 201.8 26.7 288 12-343 58-398 (399)
39 KOG0281 Beta-TrCP (transducin 100.0 5.1E-30 1.1E-34 213.3 13.4 264 19-341 198-475 (499)
40 KOG0265 U5 snRNP-specific prot 100.0 4.7E-28 1E-32 198.0 23.6 235 68-341 44-294 (338)
41 KOG0319 WD40-repeat-containing 100.0 1.7E-28 3.7E-33 221.6 21.7 242 16-301 363-618 (775)
42 KOG0291 WD40-repeat-containing 100.0 2.7E-27 5.8E-32 214.4 28.5 275 19-342 266-549 (893)
43 KOG0281 Beta-TrCP (transducin 100.0 2.7E-29 5.9E-34 209.0 14.0 246 16-305 235-480 (499)
44 KOG1036 Mitotic spindle checkp 100.0 3.9E-27 8.6E-32 193.3 26.2 277 15-333 10-294 (323)
45 KOG0283 WD40 repeat-containing 100.0 7.1E-28 1.5E-32 221.0 24.2 245 69-342 265-575 (712)
46 KOG0292 Vesicle coat complex C 100.0 1.7E-27 3.6E-32 218.9 26.2 278 16-341 7-319 (1202)
47 PLN00181 protein SPA1-RELATED; 100.0 9.9E-27 2.1E-31 229.9 31.5 240 68-342 480-737 (793)
48 KOG0306 WD40-repeat-containing 100.0 5.8E-27 1.2E-31 212.1 26.0 279 12-342 367-663 (888)
49 KOG0772 Uncharacterized conser 100.0 3.2E-27 6.9E-32 205.6 23.0 293 17-343 166-487 (641)
50 KOG0318 WD40 repeat stress pro 100.0 3.5E-26 7.6E-31 199.6 29.5 293 16-343 188-602 (603)
51 KOG0293 WD40 repeat-containing 100.0 1.9E-27 4.2E-32 201.9 20.6 282 16-342 222-512 (519)
52 KOG0270 WD40 repeat-containing 100.0 3E-27 6.6E-32 202.4 21.9 284 22-342 129-448 (463)
53 KOG0305 Anaphase promoting com 100.0 5.2E-27 1.1E-31 210.0 24.3 275 20-343 179-461 (484)
54 KOG0266 WD40 repeat-containing 100.0 8E-27 1.7E-31 215.6 26.3 246 15-302 200-454 (456)
55 KOG0316 Conserved WD40 repeat- 100.0 7.5E-27 1.6E-31 185.0 22.0 234 68-341 14-255 (307)
56 KOG0288 WD40 repeat protein Ti 100.0 8.2E-28 1.8E-32 204.1 17.1 278 17-341 174-459 (459)
57 KOG0282 mRNA splicing factor [ 100.0 8.1E-28 1.8E-32 207.9 16.8 285 11-341 206-503 (503)
58 KOG0276 Vesicle coat complex C 100.0 1.1E-26 2.3E-31 206.5 23.5 240 69-342 11-256 (794)
59 KOG0316 Conserved WD40 repeat- 100.0 2.1E-26 4.5E-31 182.5 22.4 271 17-340 16-296 (307)
60 KOG0293 WD40 repeat-containing 100.0 4E-27 8.6E-32 200.0 19.4 242 16-303 267-514 (519)
61 KOG0640 mRNA cleavage stimulat 100.0 3E-27 6.6E-32 194.1 17.2 253 14-302 168-426 (430)
62 KOG0278 Serine/threonine kinas 100.0 1.3E-27 2.7E-32 190.9 14.4 248 10-302 41-297 (334)
63 PTZ00421 coronin; Provisional 100.0 4E-25 8.8E-30 204.0 32.6 226 67-322 71-313 (493)
64 KOG0295 WD40 repeat-containing 100.0 5.6E-27 1.2E-31 196.2 18.3 250 65-341 102-362 (406)
65 KOG0292 Vesicle coat complex C 100.0 1E-25 2.2E-30 207.3 27.6 284 6-337 38-390 (1202)
66 KOG0301 Phospholipase A2-activ 100.0 3.2E-26 7E-31 205.7 23.3 270 16-341 12-286 (745)
67 KOG1332 Vesicle coat complex C 100.0 8.4E-27 1.8E-31 185.6 16.9 247 68-341 8-284 (299)
68 KOG0274 Cdc4 and related F-box 99.9 9.2E-26 2E-30 208.7 25.9 268 19-342 209-481 (537)
69 KOG0643 Translation initiation 99.9 2.8E-25 6E-30 179.1 25.1 243 64-341 3-259 (327)
70 KOG0641 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 171.9 27.7 295 11-342 25-348 (350)
71 KOG0282 mRNA splicing factor [ 99.9 5.3E-27 1.1E-31 202.9 15.9 249 10-300 249-503 (503)
72 KOG0318 WD40 repeat stress pro 99.9 1.7E-24 3.6E-29 189.2 30.8 280 16-341 145-471 (603)
73 KOG0302 Ribosome Assembly prot 99.9 4.4E-26 9.6E-31 191.7 20.1 253 11-295 144-432 (440)
74 KOG0289 mRNA splicing factor [ 99.9 4.6E-25 1E-29 188.6 25.9 277 19-341 220-504 (506)
75 cd00200 WD40 WD40 domain, foun 99.9 1.4E-24 2.9E-29 188.0 29.1 237 16-300 49-289 (289)
76 KOG0290 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 178.9 24.7 301 8-340 34-362 (364)
77 KOG0283 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 203.7 24.1 249 16-303 265-577 (712)
78 KOG0269 WD40 repeat-containing 99.9 1.9E-26 4E-31 209.5 15.0 239 20-298 89-336 (839)
79 KOG0275 Conserved WD40 repeat- 99.9 6.2E-26 1.4E-30 187.6 16.7 288 13-341 208-507 (508)
80 KOG0307 Vesicle coat complex C 99.9 1.6E-26 3.5E-31 218.2 14.7 294 19-342 7-326 (1049)
81 PTZ00421 coronin; Provisional 99.9 4.8E-24 1E-28 196.9 30.6 230 16-275 73-316 (493)
82 KOG0639 Transducin-like enhanc 99.9 3.9E-25 8.4E-30 192.2 20.8 283 10-340 411-701 (705)
83 KOG0269 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 203.8 18.3 276 20-337 41-334 (839)
84 PTZ00420 coronin; Provisional 99.9 3E-24 6.4E-29 199.4 27.2 244 51-323 56-317 (568)
85 KOG0305 Anaphase promoting com 99.9 1.3E-24 2.7E-29 194.7 23.4 238 18-303 217-462 (484)
86 KOG0643 Translation initiation 99.9 1.2E-23 2.6E-28 169.7 25.8 280 12-340 4-314 (327)
87 KOG0278 Serine/threonine kinas 99.9 2.3E-25 5E-30 178.0 15.6 280 13-341 9-295 (334)
88 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-22 3.1E-27 167.3 32.1 278 17-340 13-300 (311)
89 KOG0275 Conserved WD40 repeat- 99.9 1.8E-25 4E-30 184.8 14.5 243 68-341 210-465 (508)
90 KOG0641 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 165.3 24.4 241 17-301 88-348 (350)
91 KOG1407 WD40 repeat protein [F 99.9 1.7E-23 3.7E-28 168.3 24.8 270 16-334 18-293 (313)
92 KOG0647 mRNA export protein (c 99.9 9.3E-24 2E-28 173.0 23.5 235 70-342 26-280 (347)
93 KOG1332 Vesicle coat complex C 99.9 1E-24 2.2E-29 173.7 17.4 255 11-304 4-288 (299)
94 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.5E-28 173.0 23.3 233 69-342 11-261 (323)
95 KOG0270 WD40 repeat-containing 99.9 2.2E-24 4.7E-29 185.0 19.2 246 21-303 176-450 (463)
96 KOG4283 Transcription-coupled 99.9 1.3E-23 2.9E-28 171.7 22.7 216 68-306 40-280 (397)
97 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-22 2.4E-27 167.9 28.1 236 70-341 13-260 (311)
98 KOG0299 U3 snoRNP-associated p 99.9 2.1E-23 4.6E-28 179.7 23.3 280 16-334 140-446 (479)
99 KOG0640 mRNA cleavage stimulat 99.9 3.8E-24 8.3E-29 176.0 17.9 210 62-301 103-334 (430)
100 PTZ00420 coronin; Provisional 99.9 1E-22 2.3E-27 189.2 28.8 217 88-341 50-291 (568)
101 KOG0308 Conserved WD40 repeat- 99.9 4.9E-24 1.1E-28 190.5 18.8 270 32-341 35-325 (735)
102 KOG0973 Histone transcription 99.9 8.1E-23 1.7E-27 192.6 25.8 304 9-341 6-353 (942)
103 KOG0290 Conserved WD40 repeat- 99.9 2.4E-23 5.3E-28 169.8 18.5 236 14-276 92-349 (364)
104 KOG0296 Angio-associated migra 99.9 8.1E-23 1.7E-27 171.5 21.6 236 17-301 147-397 (399)
105 KOG0299 U3 snoRNP-associated p 99.9 1.2E-22 2.6E-27 175.1 22.9 248 16-301 200-455 (479)
106 KOG0274 Cdc4 and related F-box 99.9 1.7E-22 3.6E-27 187.2 24.2 235 16-303 247-483 (537)
107 KOG0268 Sof1-like rRNA process 99.9 9.3E-24 2E-28 176.9 14.2 232 68-341 63-300 (433)
108 KOG0300 WD40 repeat-containing 99.9 6.7E-23 1.5E-27 169.2 19.0 277 17-341 147-474 (481)
109 KOG4378 Nuclear protein COP1 [ 99.9 5.6E-23 1.2E-27 178.6 19.2 258 51-341 14-278 (673)
110 KOG0306 WD40-repeat-containing 99.9 2.3E-22 4.9E-27 182.6 23.2 242 19-305 413-667 (888)
111 KOG0646 WD40 repeat protein [G 99.9 4.8E-22 1E-26 171.6 22.0 256 35-322 51-329 (476)
112 KOG2445 Nuclear pore complex c 99.9 2.2E-21 4.7E-26 159.6 23.7 252 16-303 11-319 (361)
113 KOG0310 Conserved WD40 repeat- 99.9 2.4E-22 5.2E-27 174.4 18.8 234 69-341 24-266 (487)
114 KOG0289 mRNA splicing factor [ 99.9 1E-21 2.2E-26 168.3 22.0 234 73-342 221-461 (506)
115 KOG0772 Uncharacterized conser 99.9 4.4E-22 9.6E-27 173.8 19.7 245 71-342 167-444 (641)
116 KOG0294 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 161.2 21.1 234 16-303 41-282 (362)
117 KOG0973 Histone transcription 99.9 1.3E-21 2.9E-26 184.4 23.2 244 15-301 66-354 (942)
118 KOG0294 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 157.7 23.6 234 67-342 39-280 (362)
119 KOG0288 WD40 repeat protein Ti 99.9 6.6E-22 1.4E-26 168.4 18.7 236 20-300 221-459 (459)
120 KOG4328 WD40 protein [Function 99.9 2E-21 4.4E-26 167.5 21.7 294 16-342 184-494 (498)
121 KOG0307 Vesicle coat complex C 99.9 1.2E-22 2.7E-27 192.2 15.1 256 11-301 57-326 (1049)
122 KOG0302 Ribosome Assembly prot 99.9 2.1E-21 4.6E-26 163.6 20.6 243 65-336 145-432 (440)
123 KOG1407 WD40 repeat protein [F 99.9 3.9E-21 8.5E-26 154.8 20.8 236 68-341 17-259 (313)
124 KOG2106 Uncharacterized conser 99.9 4.1E-20 8.8E-25 161.2 28.3 270 20-340 202-518 (626)
125 KOG0301 Phospholipase A2-activ 99.9 2E-21 4.4E-26 175.1 19.4 233 68-342 11-248 (745)
126 KOG1007 WD repeat protein TSSC 99.9 1E-20 2.3E-25 154.4 20.8 256 19-300 64-359 (370)
127 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-21 8E-26 167.4 19.2 258 21-322 37-303 (673)
128 KOG0308 Conserved WD40 repeat- 99.9 1.9E-21 4.2E-26 174.0 18.0 243 16-301 71-326 (735)
129 KOG0300 WD40 repeat-containing 99.9 5.6E-21 1.2E-25 157.9 19.0 237 68-341 145-426 (481)
130 KOG2445 Nuclear pore complex c 99.9 7.2E-20 1.6E-24 150.8 23.9 254 69-341 11-316 (361)
131 KOG2048 WD40 repeat protein [G 99.9 1.6E-19 3.4E-24 162.7 28.2 281 17-339 24-315 (691)
132 KOG4328 WD40 protein [Function 99.9 4.9E-21 1.1E-25 165.1 17.5 241 70-341 185-448 (498)
133 KOG1274 WD40 repeat protein [G 99.9 1.2E-19 2.5E-24 168.5 27.7 269 13-323 8-281 (933)
134 KOG0267 Microtubule severing p 99.9 3.4E-22 7.4E-27 180.8 9.9 220 17-275 27-251 (825)
135 KOG1408 WD40 repeat protein [F 99.9 8.5E-21 1.8E-25 171.6 18.4 242 20-304 461-715 (1080)
136 KOG0321 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 168.0 19.5 256 12-303 93-392 (720)
137 KOG0650 WD40 repeat nucleolar 99.9 1.8E-20 3.9E-25 166.5 19.3 278 16-341 398-733 (733)
138 KOG4714 Nucleoporin [Nuclear s 99.9 2.9E-21 6.4E-26 155.5 12.1 235 73-341 38-316 (319)
139 KOG2055 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 156.2 23.3 279 18-341 213-510 (514)
140 KOG1007 WD repeat protein TSSC 99.9 1E-19 2.2E-24 148.7 21.1 259 53-341 44-359 (370)
141 KOG1587 Cytoplasmic dynein int 99.9 7.1E-20 1.5E-24 168.6 22.7 266 51-341 224-514 (555)
142 KOG0267 Microtubule severing p 99.9 6.2E-22 1.3E-26 179.1 8.8 236 51-332 16-257 (825)
143 KOG0646 WD40 repeat protein [G 99.9 6.6E-20 1.4E-24 158.5 19.7 229 16-275 79-332 (476)
144 KOG1408 WD40 repeat protein [F 99.9 1.9E-19 4.1E-24 163.1 21.9 242 73-343 461-713 (1080)
145 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 162.5 19.9 251 75-341 53-345 (720)
146 KOG4283 Transcription-coupled 99.8 9.1E-19 2E-23 143.6 23.5 288 16-340 41-362 (397)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.3E-17 2.8E-22 146.5 30.1 266 35-342 2-278 (300)
148 KOG1539 WD repeat protein [Gen 99.8 8.7E-19 1.9E-23 161.2 22.6 282 17-342 287-647 (910)
149 KOG1274 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 160.1 24.9 244 68-341 10-260 (933)
150 KOG2106 Uncharacterized conser 99.8 1.5E-17 3.4E-22 145.3 28.6 300 5-341 129-475 (626)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.9E-17 6.3E-22 144.2 30.9 268 11-322 23-300 (300)
152 KOG2048 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 151.5 27.6 243 71-341 25-273 (691)
153 KOG0639 Transducin-like enhanc 99.8 1.2E-19 2.7E-24 158.2 14.7 244 64-343 412-663 (705)
154 KOG1539 WD repeat protein [Gen 99.8 2.9E-18 6.3E-23 157.8 23.9 303 6-343 189-606 (910)
155 KOG2096 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 137.9 25.7 289 16-341 84-400 (420)
156 KOG4227 WD40 repeat protein [G 99.8 2.5E-18 5.5E-23 146.0 20.2 250 67-343 52-322 (609)
157 KOG1063 RNA polymerase II elon 99.8 1.1E-17 2.4E-22 151.1 25.5 292 14-343 263-699 (764)
158 KOG1034 Transcriptional repres 99.8 6.5E-19 1.4E-23 146.3 16.2 256 17-301 88-382 (385)
159 KOG1445 Tumor-specific antigen 99.8 9.9E-19 2.1E-23 156.5 17.6 163 14-187 75-249 (1012)
160 KOG0649 WD40 repeat protein [G 99.8 6.1E-17 1.3E-21 129.6 25.9 278 20-343 12-316 (325)
161 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.7E-22 157.2 25.3 289 21-342 1067-1380(1387)
162 KOG2919 Guanine nucleotide-bin 99.8 2.8E-18 6E-23 142.4 18.2 240 11-275 97-353 (406)
163 KOG0303 Actin-binding protein 99.8 9.3E-18 2E-22 142.6 20.5 207 68-305 78-297 (472)
164 KOG1273 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 135.0 23.3 242 66-342 19-279 (405)
165 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 137.3 20.9 276 20-338 51-364 (406)
166 KOG4227 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 141.3 18.4 263 16-302 54-387 (609)
167 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 139.5 15.9 191 35-241 41-244 (376)
168 KOG1188 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 136.4 17.1 193 82-303 40-243 (376)
169 KOG1034 Transcriptional repres 99.8 2.5E-17 5.5E-22 137.0 14.8 250 69-341 36-335 (385)
170 KOG1587 Cytoplasmic dynein int 99.8 2.2E-16 4.7E-21 145.8 22.0 247 18-304 242-518 (555)
171 KOG2096 WD40 repeat protein [G 99.7 8E-16 1.7E-20 127.7 21.4 241 69-341 84-358 (420)
172 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-17 5.6E-22 145.8 13.4 253 16-304 292-563 (577)
173 KOG0650 WD40 repeat nucleolar 99.7 7.1E-17 1.5E-21 143.9 16.0 198 66-299 516-732 (733)
174 KOG1538 Uncharacterized conser 99.7 5.6E-16 1.2E-20 139.9 20.1 279 10-341 4-291 (1081)
175 KOG1273 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 124.7 21.7 280 13-341 19-320 (405)
176 KOG1063 RNA polymerase II elon 99.7 3.7E-15 8.1E-20 135.1 24.4 294 15-343 51-437 (764)
177 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 121.1 20.0 234 74-337 13-268 (325)
178 KOG1524 WD40 repeat-containing 99.7 7.8E-16 1.7E-20 135.8 18.5 261 14-339 10-282 (737)
179 KOG0303 Actin-binding protein 99.7 3.1E-15 6.8E-20 127.4 19.0 205 16-241 79-296 (472)
180 KOG0642 Cell-cycle nuclear pro 99.7 3.9E-16 8.5E-21 138.3 14.0 250 68-342 291-560 (577)
181 KOG1240 Protein kinase contain 99.7 2.8E-14 6E-19 136.9 25.6 261 13-302 1043-1334(1431)
182 KOG1517 Guanine nucleotide bin 99.7 1.1E-14 2.5E-19 137.6 22.7 239 72-341 1065-1331(1387)
183 KOG1445 Tumor-specific antigen 99.7 4.4E-16 9.6E-21 139.8 12.6 224 51-302 605-844 (1012)
184 KOG1334 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 129.0 16.0 304 16-341 140-464 (559)
185 KOG2055 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 124.4 19.4 226 70-332 212-454 (514)
186 KOG2110 Uncharacterized conser 99.6 1.8E-13 3.9E-18 116.0 24.1 231 73-341 7-246 (391)
187 COG2319 FOG: WD40 repeat [Gene 99.6 1.7E-12 3.6E-17 118.3 33.0 280 14-342 61-358 (466)
188 KOG0322 G-protein beta subunit 99.6 6.1E-15 1.3E-19 119.5 14.5 249 69-341 12-321 (323)
189 KOG3881 Uncharacterized conser 99.6 4.9E-14 1.1E-18 120.1 20.6 267 14-322 51-341 (412)
190 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.5E-20 140.9 11.0 270 16-341 188-466 (1113)
191 KOG0322 G-protein beta subunit 99.6 1E-14 2.2E-19 118.2 15.1 246 16-301 12-322 (323)
192 COG2319 FOG: WD40 repeat [Gene 99.6 5.5E-12 1.2E-16 114.9 34.8 279 15-342 152-441 (466)
193 KOG1523 Actin-related protein 99.6 1.2E-13 2.7E-18 114.9 21.2 242 71-334 10-269 (361)
194 KOG1009 Chromatin assembly com 99.6 1.3E-13 2.7E-18 118.1 21.8 300 17-339 12-368 (434)
195 PRK11028 6-phosphogluconolacto 99.6 2E-12 4.3E-17 115.5 30.0 274 37-342 5-303 (330)
196 KOG1310 WD40 repeat protein [G 99.6 9.1E-15 2E-19 129.5 13.3 212 111-341 46-301 (758)
197 KOG1334 WD40 repeat protein [G 99.6 2.9E-14 6.4E-19 124.6 15.9 254 68-342 139-423 (559)
198 KOG0771 Prolactin regulatory e 99.6 3.1E-14 6.7E-19 122.4 15.3 197 75-301 148-353 (398)
199 KOG2110 Uncharacterized conser 99.6 4.2E-12 9E-17 107.8 26.4 233 20-301 7-247 (391)
200 PRK11028 6-phosphogluconolacto 99.6 3E-12 6.5E-17 114.4 26.6 262 11-302 27-304 (330)
201 KOG2321 WD40 repeat protein [G 99.6 3E-13 6.4E-18 120.6 19.1 256 62-343 42-343 (703)
202 KOG1310 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 126.3 11.4 164 68-240 47-232 (758)
203 KOG1240 Protein kinase contain 99.5 1.6E-12 3.6E-17 125.0 23.0 246 68-342 1045-1333(1431)
204 KOG0280 Uncharacterized conser 99.5 5.3E-12 1.2E-16 104.1 21.9 228 24-275 15-266 (339)
205 KOG1354 Serine/threonine prote 99.5 3E-12 6.6E-17 107.7 19.8 263 17-300 24-357 (433)
206 KOG2111 Uncharacterized conser 99.5 1E-11 2.2E-16 103.6 22.4 232 73-341 7-254 (346)
207 KOG1538 Uncharacterized conser 99.5 1.1E-12 2.4E-17 118.9 17.1 236 11-300 45-291 (1081)
208 KOG1523 Actin-related protein 99.5 1.8E-12 3.8E-17 108.1 16.8 200 115-341 10-234 (361)
209 KOG0644 Uncharacterized conser 99.5 9.4E-14 2E-18 128.5 8.6 234 68-342 187-425 (1113)
210 KOG1524 WD40 repeat-containing 99.5 1.9E-12 4.2E-17 114.7 16.4 167 125-329 75-243 (737)
211 KOG1963 WD40 repeat protein [G 99.5 4.3E-11 9.2E-16 111.9 25.8 292 22-341 164-536 (792)
212 KOG1272 WD40-repeat-containing 99.5 1.7E-13 3.8E-18 119.2 9.1 260 22-337 133-402 (545)
213 KOG2111 Uncharacterized conser 99.4 3.5E-10 7.5E-15 94.5 25.5 231 22-301 9-255 (346)
214 KOG2139 WD40 repeat protein [G 99.4 4E-11 8.6E-16 101.7 20.1 224 72-334 99-366 (445)
215 KOG2139 WD40 repeat protein [G 99.4 1.8E-10 4E-15 97.8 23.6 278 20-338 100-426 (445)
216 KOG1963 WD40 repeat protein [G 99.4 7.9E-11 1.7E-15 110.1 23.4 251 19-303 206-539 (792)
217 PRK01742 tolB translocation pr 99.4 3.7E-11 8E-16 111.0 21.1 209 91-340 183-398 (429)
218 KOG1409 Uncharacterized conser 99.4 3.5E-11 7.5E-16 101.4 16.8 253 7-302 12-270 (404)
219 KOG1064 RAVE (regulator of V-A 99.4 2.2E-12 4.8E-17 128.1 10.9 193 20-248 2210-2407(2439)
220 KOG1009 Chromatin assembly com 99.4 1.8E-11 3.9E-16 105.1 15.0 159 70-240 12-196 (434)
221 KOG1272 WD40-repeat-containing 99.4 1.8E-12 4E-17 112.9 8.7 224 74-341 132-360 (545)
222 KOG3881 Uncharacterized conser 99.4 2.3E-10 5E-15 98.0 20.4 248 67-341 51-318 (412)
223 KOG2394 WD40 protein DMR-N9 [G 99.4 1.5E-10 3.2E-15 103.0 19.6 201 81-304 184-454 (636)
224 PRK01742 tolB translocation pr 99.3 3.3E-10 7.1E-15 104.7 22.9 227 49-322 184-425 (429)
225 KOG1354 Serine/threonine prote 99.3 7.7E-11 1.7E-15 99.4 16.6 258 69-341 23-357 (433)
226 KOG0771 Prolactin regulatory e 99.3 4.5E-10 9.8E-15 97.1 21.0 195 119-341 148-352 (398)
227 KOG2321 WD40 repeat protein [G 99.3 2.8E-10 6.1E-15 102.0 19.7 244 11-299 44-340 (703)
228 KOG0280 Uncharacterized conser 99.3 2.3E-10 5E-15 94.6 17.5 249 19-301 70-332 (339)
229 PF08662 eIF2A: Eukaryotic tra 99.3 3.2E-10 6.9E-15 92.8 18.4 133 135-303 37-180 (194)
230 KOG0309 Conserved WD40 repeat- 99.3 9.9E-12 2.2E-16 114.1 9.8 263 20-306 26-343 (1081)
231 KOG0974 WD-repeat protein WDR6 99.3 1.3E-10 2.9E-15 110.5 15.8 184 33-240 98-289 (967)
232 KOG0974 WD-repeat protein WDR6 99.3 5.7E-10 1.2E-14 106.3 19.4 182 125-341 99-286 (967)
233 PRK03629 tolB translocation pr 99.3 8.2E-09 1.8E-13 95.4 26.9 233 48-322 178-427 (429)
234 PF08662 eIF2A: Eukaryotic tra 99.2 7.9E-10 1.7E-14 90.5 17.1 131 178-341 37-177 (194)
235 KOG2394 WD40 protein DMR-N9 [G 99.2 9.9E-11 2.1E-15 104.0 11.8 157 72-240 220-453 (636)
236 PRK04922 tolB translocation pr 99.2 8.3E-09 1.8E-13 95.6 24.7 229 50-322 185-432 (433)
237 PRK02889 tolB translocation pr 99.2 5.2E-09 1.1E-13 96.7 23.2 188 114-335 194-392 (427)
238 PRK05137 tolB translocation pr 99.2 1.8E-08 3.9E-13 93.5 26.4 229 50-322 183-432 (435)
239 PRK05137 tolB translocation pr 99.2 1.5E-08 3.1E-13 94.1 25.3 208 93-341 183-410 (435)
240 COG5170 CDC55 Serine/threonine 99.2 1.2E-09 2.6E-14 91.2 15.0 231 7-248 15-318 (460)
241 KOG1064 RAVE (regulator of V-A 99.2 2.9E-10 6.2E-15 113.6 13.2 205 81-333 2219-2437(2439)
242 PRK02889 tolB translocation pr 99.1 2E-08 4.4E-13 92.8 23.5 231 50-322 177-424 (427)
243 PRK04922 tolB translocation pr 99.1 1.6E-08 3.4E-13 93.7 22.4 208 93-341 185-409 (433)
244 PRK03629 tolB translocation pr 99.1 3.6E-08 7.7E-13 91.1 24.6 208 93-341 180-404 (429)
245 KOG4547 WD40 repeat-containing 99.1 3.3E-08 7.1E-13 89.3 20.7 188 33-240 4-221 (541)
246 KOG4547 WD40 repeat-containing 99.1 1.2E-07 2.5E-12 85.7 23.9 167 82-273 5-195 (541)
247 KOG4497 Uncharacterized conser 99.1 1.2E-07 2.7E-12 80.0 22.3 280 17-340 47-430 (447)
248 KOG0309 Conserved WD40 repeat- 99.0 1.5E-09 3.2E-14 100.1 9.9 200 68-303 21-233 (1081)
249 COG5170 CDC55 Serine/threonine 99.0 7.8E-09 1.7E-13 86.4 13.0 222 68-302 23-309 (460)
250 TIGR02800 propeller_TolB tol-p 99.0 2.3E-07 5E-12 85.7 23.8 202 93-335 171-386 (417)
251 KOG4190 Uncharacterized conser 99.0 2.6E-09 5.5E-14 95.7 9.6 218 66-311 730-957 (1034)
252 PF10282 Lactonase: Lactonase, 99.0 5.8E-06 1.3E-10 74.3 31.3 284 37-342 2-321 (345)
253 TIGR02800 propeller_TolB tol-p 99.0 9E-07 1.9E-11 81.8 26.8 210 49-302 170-397 (417)
254 KOG4497 Uncharacterized conser 98.9 2.1E-08 4.5E-13 84.5 11.2 199 117-342 12-239 (447)
255 KOG2315 Predicted translation 98.9 1.7E-06 3.7E-11 78.0 23.6 269 20-339 75-380 (566)
256 PRK00178 tolB translocation pr 98.9 1.4E-06 2.9E-11 80.9 23.7 196 16-239 196-406 (430)
257 KOG4532 WD40-like repeat conta 98.8 6.8E-07 1.5E-11 73.6 16.9 195 81-302 83-282 (344)
258 COG2706 3-carboxymuconate cycl 98.8 7.7E-05 1.7E-09 64.3 30.0 286 36-342 4-320 (346)
259 KOG2315 Predicted translation 98.8 4.1E-06 8.9E-11 75.6 22.4 223 17-275 164-413 (566)
260 PF02239 Cytochrom_D1: Cytochr 98.8 3E-06 6.6E-11 76.4 22.0 189 126-341 6-200 (369)
261 KOG1409 Uncharacterized conser 98.8 4.6E-07 1E-11 77.0 15.3 158 19-187 69-271 (404)
262 PRK00178 tolB translocation pr 98.8 5.7E-06 1.2E-10 76.8 24.1 190 114-340 197-403 (430)
263 KOG4714 Nucleoporin [Nuclear s 98.8 5.3E-08 1.1E-12 79.6 9.0 147 81-240 100-255 (319)
264 KOG1008 Uncharacterized conser 98.7 4E-09 8.7E-14 96.0 2.5 204 70-301 55-274 (783)
265 PRK04792 tolB translocation pr 98.7 6.9E-06 1.5E-10 76.4 24.0 191 114-341 216-423 (448)
266 KOG4532 WD40-like repeat conta 98.7 1.6E-05 3.4E-10 65.7 22.8 154 83-246 129-289 (344)
267 KOG2695 WD40 repeat protein [G 98.7 4.4E-08 9.6E-13 83.1 8.4 183 65-272 206-402 (425)
268 COG2706 3-carboxymuconate cycl 98.7 5.9E-05 1.3E-09 65.0 27.2 262 13-302 34-321 (346)
269 PF02239 Cytochrom_D1: Cytochr 98.7 7.9E-06 1.7E-10 73.7 23.4 193 83-303 6-203 (369)
270 PRK01029 tolB translocation pr 98.7 2.4E-05 5.3E-10 72.3 26.7 238 49-322 165-424 (428)
271 PF10282 Lactonase: Lactonase, 98.7 2.6E-05 5.6E-10 70.1 26.3 259 17-301 35-321 (345)
272 KOG2041 WD40 repeat protein [G 98.7 2.4E-06 5.1E-11 79.3 19.2 284 15-341 11-335 (1189)
273 KOG2314 Translation initiation 98.7 1.5E-05 3.2E-10 72.1 23.4 290 2-335 234-559 (698)
274 PRK04792 tolB translocation pr 98.7 1.6E-05 3.5E-10 74.0 25.1 230 50-322 199-446 (448)
275 TIGR03300 assembly_YfgL outer 98.7 2.2E-05 4.8E-10 71.5 24.9 221 81-342 104-337 (377)
276 KOG2041 WD40 repeat protein [G 98.7 2.9E-07 6.3E-12 85.2 11.7 245 67-334 10-280 (1189)
277 KOG3914 WD repeat protein WDR4 98.6 1.1E-06 2.4E-11 76.2 12.7 164 25-198 65-232 (390)
278 KOG1275 PAB-dependent poly(A) 98.6 2.7E-06 5.9E-11 80.9 16.1 186 81-303 146-343 (1118)
279 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.7E-12 79.6 7.3 128 67-199 248-386 (425)
280 PRK01029 tolB translocation pr 98.6 3.8E-05 8.3E-10 70.9 23.6 217 20-273 186-425 (428)
281 PLN02919 haloacid dehalogenase 98.6 0.0001 2.2E-09 75.3 28.1 251 76-342 572-887 (1057)
282 TIGR03300 assembly_YfgL outer 98.6 5.2E-05 1.1E-09 69.1 23.8 221 81-341 144-377 (377)
283 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00028 6.1E-09 62.7 26.9 252 12-302 40-330 (352)
284 KOG3914 WD repeat protein WDR4 98.5 3.1E-06 6.8E-11 73.4 12.4 154 75-244 66-228 (390)
285 KOG1645 RING-finger-containing 98.5 2.6E-05 5.5E-10 68.0 17.6 228 17-275 192-443 (463)
286 KOG4190 Uncharacterized conser 98.4 2E-06 4.3E-11 77.6 10.5 276 16-340 733-1033(1034)
287 KOG0882 Cyclophilin-related pe 98.4 4.3E-06 9.4E-11 73.6 11.6 213 66-300 4-229 (558)
288 PF04762 IKI3: IKI3 family; I 98.3 0.00055 1.2E-08 68.9 26.4 236 17-301 208-455 (928)
289 KOG1275 PAB-dependent poly(A) 98.3 1.7E-05 3.6E-10 75.8 14.1 179 125-341 147-340 (1118)
290 KOG1912 WD40 repeat protein [G 98.3 0.00021 4.5E-09 67.5 20.6 256 11-305 8-307 (1062)
291 PF00400 WD40: WD domain, G-be 98.3 3.5E-06 7.6E-11 49.3 5.5 32 259-300 8-39 (39)
292 PF04762 IKI3: IKI3 family; I 98.3 0.001 2.2E-08 67.1 26.1 283 18-340 21-376 (928)
293 KOG1912 WD40 repeat protein [G 98.2 0.00012 2.5E-09 69.1 17.7 245 71-342 15-303 (1062)
294 PLN02919 haloacid dehalogenase 98.2 0.0034 7.4E-08 64.5 29.3 213 74-303 626-889 (1057)
295 PRK11138 outer membrane biogen 98.2 0.0021 4.6E-08 58.9 25.2 223 81-343 159-394 (394)
296 PF11768 DUF3312: Protein of u 98.2 0.0001 2.2E-09 67.6 15.9 117 65-187 199-330 (545)
297 KOG1645 RING-finger-containing 98.2 1.5E-05 3.3E-10 69.3 9.9 99 137-248 175-275 (463)
298 COG5354 Uncharacterized protei 98.2 0.001 2.2E-08 60.0 21.3 273 17-341 31-346 (561)
299 COG4946 Uncharacterized protei 98.1 0.0048 1.1E-07 55.4 24.7 166 32-224 330-504 (668)
300 PF00400 WD40: WD domain, G-be 98.1 1.4E-05 3.1E-10 46.6 6.2 36 148-184 3-39 (39)
301 KOG2314 Translation initiation 98.1 0.0028 6.1E-08 57.9 23.1 273 21-341 213-523 (698)
302 PF08450 SGL: SMP-30/Gluconola 98.1 0.0046 1E-07 52.7 28.2 209 76-322 4-234 (246)
303 KOG1008 Uncharacterized conser 98.1 8.4E-07 1.8E-11 81.3 0.8 210 16-240 54-276 (783)
304 PF15492 Nbas_N: Neuroblastoma 98.1 0.0041 8.9E-08 52.3 22.2 104 73-176 45-167 (282)
305 KOG2114 Vacuolar assembly/sort 98.1 0.00089 1.9E-08 64.1 19.8 199 117-342 27-242 (933)
306 KOG0882 Cyclophilin-related pe 98.0 8.9E-05 1.9E-09 65.6 11.8 199 113-341 7-229 (558)
307 PF11768 DUF3312: Protein of u 98.0 0.00076 1.6E-08 62.1 17.7 70 159-241 261-331 (545)
308 COG5354 Uncharacterized protei 98.0 0.0038 8.2E-08 56.4 21.5 280 12-336 66-382 (561)
309 KOG2066 Vacuolar assembly/sort 97.9 0.00054 1.2E-08 65.0 15.7 147 70-242 38-190 (846)
310 PF13360 PQQ_2: PQQ-like domai 97.9 0.01 2.2E-07 50.0 27.8 217 91-342 2-229 (238)
311 PRK04043 tolB translocation pr 97.9 0.01 2.2E-07 54.8 23.5 191 20-240 189-401 (419)
312 COG4946 Uncharacterized protei 97.9 0.0047 1E-07 55.5 19.4 141 81-241 331-479 (668)
313 KOG3617 WD40 and TPR repeat-co 97.8 0.0024 5.3E-08 61.2 18.5 117 14-143 10-131 (1416)
314 PRK04043 tolB translocation pr 97.8 0.022 4.8E-07 52.6 24.7 178 117-333 189-387 (419)
315 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0041 9E-08 45.0 14.4 92 125-234 15-109 (111)
316 KOG2114 Vacuolar assembly/sort 97.7 0.0089 1.9E-07 57.5 20.6 192 25-240 30-244 (933)
317 PRK11138 outer membrane biogen 97.7 0.015 3.2E-07 53.4 21.8 224 81-341 119-351 (394)
318 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0018 3.9E-08 46.9 11.8 101 214-339 8-110 (111)
319 KOG1832 HIV-1 Vpr-binding prot 97.6 7.1E-05 1.5E-09 71.5 4.1 154 69-243 1099-1259(1516)
320 PF03178 CPSF_A: CPSF A subuni 97.5 0.028 6.1E-07 50.0 20.5 147 82-239 42-202 (321)
321 PF15492 Nbas_N: Neuroblastoma 97.5 0.044 9.5E-07 46.3 24.8 226 82-343 8-259 (282)
322 KOG2066 Vacuolar assembly/sort 97.4 0.0024 5.2E-08 60.8 12.2 141 160-342 42-186 (846)
323 TIGR02658 TTQ_MADH_Hv methylam 97.4 0.087 1.9E-06 47.1 26.6 228 92-341 27-328 (352)
324 PF03178 CPSF_A: CPSF A subuni 97.4 0.025 5.3E-07 50.4 18.2 214 13-236 18-262 (321)
325 PF08450 SGL: SMP-30/Gluconola 97.3 0.081 1.8E-06 45.0 25.8 213 22-271 3-233 (246)
326 PF08553 VID27: VID27 cytoplas 97.3 0.006 1.3E-07 59.7 13.8 126 132-276 501-632 (794)
327 PF13360 PQQ_2: PQQ-like domai 97.2 0.094 2E-06 44.1 23.6 190 81-303 35-231 (238)
328 KOG1920 IkappaB kinase complex 97.2 0.075 1.6E-06 53.4 19.7 196 116-341 69-320 (1265)
329 KOG1920 IkappaB kinase complex 97.1 0.13 2.9E-06 51.7 20.9 201 18-241 68-324 (1265)
330 KOG4640 Anaphase-promoting com 97.0 0.0039 8.4E-08 57.9 8.9 92 159-272 22-115 (665)
331 KOG3621 WD40 repeat-containing 97.0 0.31 6.7E-06 46.4 20.8 145 33-187 44-198 (726)
332 KOG3621 WD40 repeat-containing 96.9 0.0086 1.9E-07 56.4 10.2 138 159-322 37-180 (726)
333 PF04841 Vps16_N: Vps16, N-ter 96.9 0.35 7.6E-06 44.6 26.4 198 50-275 62-272 (410)
334 PF08596 Lgl_C: Lethal giant l 96.9 0.36 7.8E-06 44.1 24.9 236 73-335 3-328 (395)
335 PF08553 VID27: VID27 cytoplas 96.8 0.045 9.8E-07 53.8 14.9 143 81-238 492-646 (794)
336 PF04053 Coatomer_WDAD: Coatom 96.8 0.16 3.4E-06 47.1 17.6 166 118-334 35-215 (443)
337 smart00320 WD40 WD40 repeats. 96.8 0.0036 7.9E-08 34.9 4.8 28 209-237 13-40 (40)
338 PF04841 Vps16_N: Vps16, N-ter 96.8 0.43 9.4E-06 44.0 22.0 49 93-145 62-111 (410)
339 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0031 6.8E-08 60.8 6.1 140 113-275 1099-1243(1516)
340 KOG4441 Proteins containing BT 96.7 0.13 2.9E-06 49.4 17.2 193 33-239 332-546 (571)
341 smart00320 WD40 WD40 repeats. 96.7 0.0048 1E-07 34.4 4.7 32 259-300 9-40 (40)
342 PF07433 DUF1513: Protein of u 96.5 0.46 1E-05 41.3 25.1 228 17-273 3-268 (305)
343 PHA02713 hypothetical protein; 96.5 0.19 4.1E-06 48.3 16.3 195 33-240 303-534 (557)
344 KOG3617 WD40 and TPR repeat-co 96.4 0.0068 1.5E-07 58.3 6.2 108 161-302 19-131 (1416)
345 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.49 1.1E-05 39.8 15.8 109 125-248 23-132 (354)
346 PF08596 Lgl_C: Lethal giant l 96.3 0.89 1.9E-05 41.6 19.6 175 159-343 88-290 (395)
347 KOG2395 Protein involved in va 96.0 0.27 5.8E-06 45.4 13.8 129 127-276 348-485 (644)
348 PF04053 Coatomer_WDAD: Coatom 95.9 1.1 2.4E-05 41.6 17.6 139 73-240 34-174 (443)
349 PF15390 DUF4613: Domain of un 95.7 1 2.2E-05 42.4 16.2 155 117-304 21-188 (671)
350 PF12894 Apc4_WD40: Anaphase-p 95.7 0.042 9E-07 33.3 5.1 34 67-100 7-41 (47)
351 PF00780 CNH: CNH domain; Int 95.6 1.3 2.8E-05 38.2 24.3 223 81-341 6-253 (275)
352 KOG4441 Proteins containing BT 95.5 1.8 4E-05 41.7 18.2 194 33-240 284-500 (571)
353 KOG2395 Protein involved in va 95.5 0.22 4.8E-06 45.9 11.0 135 170-338 348-496 (644)
354 PF15390 DUF4613: Domain of un 95.4 0.88 1.9E-05 42.8 14.7 148 72-239 20-186 (671)
355 PF06977 SdiA-regulated: SdiA- 95.2 1.7 3.6E-05 37.0 19.4 205 116-340 22-247 (248)
356 PF06977 SdiA-regulated: SdiA- 95.2 1.7 3.6E-05 37.0 22.9 165 71-239 21-201 (248)
357 KOG2444 WD40 repeat protein [G 95.2 0.029 6.4E-07 45.9 4.3 142 83-240 31-178 (238)
358 PF06433 Me-amine-dh_H: Methyl 95.1 2.2 4.7E-05 37.8 22.1 246 24-303 41-321 (342)
359 KOG2079 Vacuolar assembly/sort 95.1 0.11 2.5E-06 51.6 8.6 64 168-241 99-162 (1206)
360 PF12894 Apc4_WD40: Anaphase-p 95.0 0.076 1.6E-06 32.2 4.8 38 11-57 4-41 (47)
361 KOG4640 Anaphase-promoting com 94.7 0.24 5.1E-06 46.6 9.1 93 70-167 19-115 (665)
362 KOG2280 Vacuolar assembly/sort 94.5 4.2 9.1E-05 39.6 16.9 243 50-332 65-314 (829)
363 PHA03098 kelch-like protein; P 94.4 5 0.00011 38.5 18.8 193 34-240 295-512 (534)
364 PF10313 DUF2415: Uncharacteri 94.3 0.17 3.7E-06 29.8 4.8 32 209-240 1-34 (43)
365 COG0823 TolB Periplasmic compo 94.3 4.5 9.7E-05 37.5 16.7 92 135-240 218-315 (425)
366 PF05694 SBP56: 56kDa selenium 94.3 1.2 2.6E-05 40.6 12.3 110 135-247 222-350 (461)
367 COG5276 Uncharacterized conser 94.0 3.6 7.8E-05 35.5 23.6 178 52-244 67-246 (370)
368 KOG2444 WD40 repeat protein [G 94.0 0.26 5.7E-06 40.5 7.1 104 81-187 69-178 (238)
369 KOG2079 Vacuolar assembly/sort 94.0 0.47 1E-05 47.5 9.8 110 118-238 92-202 (1206)
370 COG5276 Uncharacterized conser 93.9 3.8 8.2E-05 35.4 23.8 183 51-246 108-292 (370)
371 COG3204 Uncharacterized protei 93.7 4.3 9.2E-05 35.1 19.2 209 115-343 85-303 (316)
372 PHA02790 Kelch-like protein; P 93.6 6.7 0.00014 37.1 17.7 111 33-145 271-386 (480)
373 cd00216 PQQ_DH Dehydrogenases 93.3 7.6 0.00016 36.8 20.7 163 82-248 61-273 (488)
374 KOG1897 Damage-specific DNA bi 93.2 10 0.00022 38.2 28.5 79 17-100 529-613 (1096)
375 PF05096 Glu_cyclase_2: Glutam 93.2 4.9 0.00011 34.3 18.0 199 12-227 36-249 (264)
376 PRK02888 nitrous-oxide reducta 93.1 4 8.7E-05 39.3 14.2 109 177-303 295-405 (635)
377 COG0823 TolB Periplasmic compo 92.9 5.7 0.00012 36.8 14.9 139 159-331 194-344 (425)
378 PHA02713 hypothetical protein; 92.9 2.2 4.8E-05 41.1 12.7 152 33-187 351-534 (557)
379 cd00216 PQQ_DH Dehydrogenases 92.7 9.3 0.0002 36.2 24.6 161 83-247 111-327 (488)
380 PF12234 Rav1p_C: RAVE protein 92.3 6.3 0.00014 38.2 14.6 105 125-238 41-155 (631)
381 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.2 11 0.00024 36.1 19.8 113 82-198 69-198 (527)
382 KOG4649 PQQ (pyrrolo-quinoline 91.3 8.3 0.00018 32.8 20.5 106 83-197 24-131 (354)
383 COG3204 Uncharacterized protei 91.1 9.4 0.0002 33.0 20.2 168 69-240 83-264 (316)
384 PF00930 DPPIV_N: Dipeptidyl p 90.3 13 0.00029 33.4 21.3 225 21-293 103-349 (353)
385 TIGR03548 mutarot_permut cycli 90.2 13 0.00028 33.0 16.5 112 34-145 73-196 (323)
386 PF07433 DUF1513: Protein of u 89.9 13 0.00028 32.6 24.2 226 83-334 18-277 (305)
387 PF05096 Glu_cyclase_2: Glutam 89.7 12 0.00026 32.0 19.5 199 65-276 36-244 (264)
388 KOG3630 Nuclear pore complex, 89.4 2.9 6.3E-05 42.6 9.5 123 209-341 101-226 (1405)
389 PHA03098 kelch-like protein; P 89.4 16 0.00035 35.0 14.9 150 33-187 342-512 (534)
390 PF12234 Rav1p_C: RAVE protein 89.2 17 0.00037 35.4 14.3 95 225-342 45-155 (631)
391 PRK02888 nitrous-oxide reducta 88.4 26 0.00055 34.1 17.3 94 133-240 294-405 (635)
392 PF10313 DUF2415: Uncharacteri 88.2 1.7 3.8E-05 25.6 4.5 29 159-187 2-34 (43)
393 PF00780 CNH: CNH domain; Int 88.1 16 0.00034 31.4 20.5 173 125-332 7-207 (275)
394 COG3823 Glutamine cyclotransfe 88.1 13 0.00029 30.5 13.5 182 33-227 55-247 (262)
395 COG3391 Uncharacterized conser 87.2 23 0.00051 32.3 15.8 112 160-303 76-191 (381)
396 PRK13616 lipoprotein LpqB; Pro 87.0 31 0.00068 33.6 18.2 183 117-322 351-550 (591)
397 COG5167 VID27 Protein involved 86.5 12 0.00025 35.1 10.8 127 128-276 483-617 (776)
398 PF07569 Hira: TUP1-like enhan 86.1 7 0.00015 32.6 8.9 70 117-187 14-96 (219)
399 COG3386 Gluconolactonase [Carb 86.0 24 0.00051 31.2 20.5 109 209-332 163-274 (307)
400 PF14781 BBS2_N: Ciliary BBSom 85.2 14 0.00031 27.9 12.5 111 163-301 4-124 (136)
401 KOG2377 Uncharacterized conser 85.1 19 0.00041 33.3 11.3 118 68-187 63-186 (657)
402 PF10168 Nup88: Nuclear pore c 85.0 44 0.00096 33.4 22.1 78 117-197 86-188 (717)
403 PF06433 Me-amine-dh_H: Methyl 84.7 28 0.00062 31.0 20.0 157 81-248 146-329 (342)
404 PF14583 Pectate_lyase22: Olig 84.7 31 0.00067 31.4 16.2 61 125-187 47-111 (386)
405 PF10168 Nup88: Nuclear pore c 84.3 47 0.001 33.2 20.4 89 159-249 86-189 (717)
406 PF08728 CRT10: CRT10; InterP 84.3 25 0.00055 34.7 12.6 113 168-301 114-245 (717)
407 PF00930 DPPIV_N: Dipeptidyl p 84.1 32 0.00069 31.0 26.3 266 18-332 42-346 (353)
408 PF08728 CRT10: CRT10; InterP 83.6 18 0.00039 35.7 11.4 115 117-238 102-245 (717)
409 PF02897 Peptidase_S9_N: Proly 83.4 37 0.0008 31.2 25.6 198 21-239 126-357 (414)
410 PRK13616 lipoprotein LpqB; Pro 83.4 22 0.00047 34.7 12.0 104 209-339 350-472 (591)
411 KOG1898 Splicing factor 3b, su 83.0 60 0.0013 33.4 14.8 123 60-187 924-1047(1205)
412 PHA02790 Kelch-like protein; P 82.1 47 0.001 31.5 14.3 146 33-187 318-471 (480)
413 KOG4460 Nuclear pore complex, 81.5 49 0.0011 31.3 15.4 32 263-303 166-199 (741)
414 KOG3630 Nuclear pore complex, 80.8 7.1 0.00015 40.0 7.6 103 19-131 156-260 (1405)
415 COG5167 VID27 Protein involved 80.7 22 0.00049 33.3 10.2 133 171-334 483-624 (776)
416 KOG1896 mRNA cleavage and poly 80.2 81 0.0018 33.1 18.4 159 68-238 1022-1212(1366)
417 KOG1916 Nuclear protein, conta 80.2 0.45 9.7E-06 46.8 -0.6 113 69-187 130-266 (1283)
418 PF14761 HPS3_N: Hermansky-Pud 79.8 33 0.00072 28.3 12.1 111 74-187 20-164 (215)
419 PF07569 Hira: TUP1-like enhan 79.5 18 0.00039 30.2 8.8 74 70-145 11-97 (219)
420 PF14727 PHTB1_N: PTHB1 N-term 79.5 53 0.0011 30.4 28.0 145 32-185 35-203 (418)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 78.8 17 0.00038 33.4 9.1 51 210-272 58-118 (415)
422 KOG4499 Ca2+-binding protein R 77.8 41 0.0009 28.3 10.7 93 74-168 160-264 (310)
423 PF11715 Nup160: Nucleoporin N 75.1 22 0.00047 34.3 9.3 67 81-147 157-252 (547)
424 TIGR02276 beta_rpt_yvtn 40-res 75.0 13 0.00028 21.1 5.4 26 218-243 1-26 (42)
425 PF10214 Rrn6: RNA polymerase 74.8 87 0.0019 31.7 13.6 106 159-275 147-259 (765)
426 PF12768 Rax2: Cortical protei 74.2 59 0.0013 28.3 13.1 74 49-124 16-97 (281)
427 PF07676 PD40: WD40-like Beta 74.1 13 0.00029 20.8 5.7 28 209-236 9-38 (39)
428 COG3391 Uncharacterized conser 73.1 75 0.0016 29.0 21.0 155 119-303 77-240 (381)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 72.8 65 0.0014 29.8 11.2 82 159-246 309-405 (415)
430 COG3490 Uncharacterized protei 72.1 67 0.0014 28.0 19.0 106 67-173 63-178 (366)
431 PF14727 PHTB1_N: PTHB1 N-term 70.9 89 0.0019 29.0 23.1 144 81-238 36-203 (418)
432 TIGR03074 PQQ_membr_DH membran 68.7 1.4E+02 0.003 30.3 22.0 112 82-198 194-353 (764)
433 PF01731 Arylesterase: Arylest 67.1 21 0.00045 24.8 5.3 32 209-240 54-85 (86)
434 KOG4499 Ca2+-binding protein R 66.9 78 0.0017 26.7 10.4 98 119-226 161-271 (310)
435 KOG2280 Vacuolar assembly/sort 66.8 1.4E+02 0.0031 29.7 17.8 51 90-144 62-113 (829)
436 COG3386 Gluconolactonase [Carb 66.0 95 0.0021 27.4 18.8 180 129-341 41-241 (307)
437 PF12657 TFIIIC_delta: Transcr 64.3 58 0.0013 25.8 8.2 32 209-240 86-122 (173)
438 KOG1897 Damage-specific DNA bi 64.1 1.8E+02 0.0039 30.0 29.5 278 19-336 354-653 (1096)
439 PF07250 Glyoxal_oxid_N: Glyox 62.6 97 0.0021 26.3 11.4 146 137-302 48-199 (243)
440 KOG1916 Nuclear protein, conta 62.6 14 0.00031 37.0 5.0 114 70-187 179-324 (1283)
441 PF14781 BBS2_N: Ciliary BBSom 62.3 67 0.0015 24.4 11.2 103 78-187 5-126 (136)
442 PF14779 BBS1: Ciliary BBSome 61.1 63 0.0014 27.6 8.0 79 261-342 175-257 (257)
443 PF14870 PSII_BNR: Photosynthe 60.6 1.2E+02 0.0026 26.8 31.2 281 11-338 9-299 (302)
444 PF05694 SBP56: 56kDa selenium 59.8 1.5E+02 0.0033 27.6 22.0 276 6-303 7-343 (461)
445 TIGR03074 PQQ_membr_DH membran 58.9 2.1E+02 0.0046 29.0 13.2 120 125-248 194-353 (764)
446 PF11715 Nup160: Nucleoporin N 58.4 65 0.0014 31.0 8.9 35 209-243 215-252 (547)
447 PF14761 HPS3_N: Hermansky-Pud 57.6 40 0.00086 27.9 6.1 42 222-275 30-72 (215)
448 KOG2247 WD40 repeat-containing 57.4 0.83 1.8E-05 42.0 -3.8 136 81-235 45-184 (615)
449 PF02897 Peptidase_S9_N: Proly 56.0 1.7E+02 0.0036 26.9 21.8 204 24-243 175-408 (414)
450 PF12341 DUF3639: Protein of u 55.9 29 0.00063 18.2 3.4 24 73-97 3-26 (27)
451 PF14870 PSII_BNR: Photosynthe 49.2 1.9E+02 0.0041 25.6 24.8 231 68-340 13-258 (302)
452 COG3490 Uncharacterized protei 48.1 1.9E+02 0.0041 25.3 11.9 99 160-276 70-175 (366)
453 KOG2377 Uncharacterized conser 47.7 2.4E+02 0.0053 26.4 16.8 146 73-228 24-173 (657)
454 TIGR03548 mutarot_permut cycli 46.1 2.1E+02 0.0045 25.2 19.7 62 125-187 124-195 (323)
455 PF10433 MMS1_N: Mono-function 45.9 2.7E+02 0.0059 26.5 12.3 150 168-338 222-384 (504)
456 KOG2247 WD40 repeat-containing 45.8 1.6 3.6E-05 40.1 -3.8 142 160-336 37-181 (615)
457 smart00564 PQQ beta-propeller 45.0 48 0.001 17.5 3.5 24 169-195 7-30 (33)
458 PF10433 MMS1_N: Mono-function 44.7 2.8E+02 0.0062 26.3 19.7 103 32-141 220-340 (504)
459 PF12657 TFIIIC_delta: Transcr 44.2 1.6E+02 0.0035 23.3 8.7 29 116-144 86-122 (173)
460 TIGR02604 Piru_Ver_Nterm putat 43.9 2.5E+02 0.0054 25.4 15.6 63 262-334 123-204 (367)
461 PLN02193 nitrile-specifier pro 42.0 3E+02 0.0066 25.9 20.1 104 81-187 228-352 (470)
462 TIGR03547 muta_rot_YjhT mutatr 41.6 2.6E+02 0.0055 24.9 19.8 66 33-102 17-95 (346)
463 KOG4460 Nuclear pore complex, 41.5 3.3E+02 0.0071 26.1 12.4 34 211-244 168-203 (741)
464 PF10647 Gmad1: Lipoprotein Lp 40.8 2.3E+02 0.005 24.1 21.8 195 117-338 25-232 (253)
465 PF12768 Rax2: Cortical protei 40.8 2.5E+02 0.0054 24.5 14.6 78 19-100 37-121 (281)
466 PF14779 BBS1: Ciliary BBSome 39.1 2.3E+02 0.0049 24.3 8.0 32 209-240 177-214 (257)
467 PF07995 GSDH: Glucose / Sorbo 39.0 2.8E+02 0.0061 24.7 14.8 65 159-228 3-71 (331)
468 KOG3522 Predicted guanine nucl 37.8 1.9E+02 0.0042 29.2 8.1 172 7-187 503-698 (925)
469 PLN02153 epithiospecifier prot 36.7 3.1E+02 0.0066 24.4 20.9 69 33-102 32-111 (341)
470 PF13570 PQQ_3: PQQ-like domai 36.3 64 0.0014 18.1 3.2 20 81-100 20-39 (40)
471 PF03088 Str_synth: Strictosid 36.2 1.5E+02 0.0032 20.7 6.5 54 171-236 30-84 (89)
472 PF01011 PQQ: PQQ enzyme repea 36.0 82 0.0018 17.6 3.7 27 170-199 2-28 (38)
473 PF08801 Nucleoporin_N: Nup133 36.0 3.5E+02 0.0077 24.9 13.5 31 263-303 190-220 (422)
474 PRK13684 Ycf48-like protein; P 35.9 3.2E+02 0.0069 24.4 29.4 152 159-341 174-329 (334)
475 KOG1900 Nuclear pore complex, 35.3 6E+02 0.013 27.4 14.0 29 159-187 244-273 (1311)
476 PF01436 NHL: NHL repeat; Int 35.1 69 0.0015 16.5 4.1 24 211-235 4-27 (28)
477 PF10395 Utp8: Utp8 family; I 34.3 4.8E+02 0.01 26.0 18.5 219 8-240 59-306 (670)
478 KOG2063 Vacuolar assembly/sort 33.8 5.5E+02 0.012 26.5 14.9 65 81-145 25-98 (877)
479 PF08309 LVIVD: LVIVD repeat; 33.6 1E+02 0.0022 18.0 5.4 33 117-149 3-35 (42)
480 PLN00033 photosystem II stabil 33.1 4E+02 0.0086 24.6 16.4 111 69-183 278-396 (398)
481 KOG3522 Predicted guanine nucl 32.1 1.7E+02 0.0037 29.6 6.8 142 83-240 548-698 (925)
482 PLN02153 epithiospecifier prot 31.7 3.7E+02 0.008 23.9 18.7 11 135-145 217-227 (341)
483 COG5290 IkappaB kinase complex 30.7 4.7E+02 0.01 26.6 9.4 133 24-167 207-346 (1243)
484 PLN02193 nitrile-specifier pro 30.2 4.7E+02 0.01 24.6 19.8 151 35-187 230-411 (470)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.9 5.3E+02 0.012 24.8 19.7 113 125-248 69-198 (527)
486 TIGR03547 muta_rot_YjhT mutatr 28.0 4.3E+02 0.0093 23.5 19.1 11 33-43 63-73 (346)
487 PRK14131 N-acetylneuraminic ac 27.1 4.8E+02 0.01 23.7 20.5 66 33-102 38-116 (376)
488 KOG3616 Selective LIM binding 26.1 2.3E+02 0.0049 28.5 6.5 67 73-143 16-83 (1636)
489 KOG0379 Kelch repeat-containin 25.2 6E+02 0.013 24.1 11.9 154 33-187 70-250 (482)
490 KOG1983 Tomosyn and related SN 24.5 8.6E+02 0.019 25.8 14.2 32 10-45 27-58 (993)
491 KOG4659 Uncharacterized conser 24.4 9.6E+02 0.021 26.3 17.7 33 111-143 343-384 (1899)
492 KOG1900 Nuclear pore complex, 23.1 9.8E+02 0.021 25.9 13.3 78 157-240 178-273 (1311)
493 KOG3616 Selective LIM binding 23.0 8.1E+02 0.018 24.9 13.5 155 18-187 14-194 (1636)
494 PF14583 Pectate_lyase22: Olig 22.1 6.2E+02 0.014 23.3 21.4 98 135-242 168-275 (386)
495 PLN00033 photosystem II stabil 20.6 6.8E+02 0.015 23.1 18.4 110 116-236 281-396 (398)
496 COG5161 SFT1 Pre-mRNA cleavage 20.4 9.7E+02 0.021 24.9 14.8 28 11-42 901-928 (1319)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=282.62 Aligned_cols=278 Identities=18% Similarity=0.195 Sum_probs=237.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.-..+|+...+++ ++..||||||++. +++|+.+.-+ ......+|.+.|.++.|+ ++..+++++.||
T Consensus 173 gd~rPis~~~fS~----ds~~laT~swsG~-----~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 173 GDTRPISGCSFSR----DSKHLATGSWSGL-----VKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred cCCCcceeeEeec----CCCeEEEeecCCc-----eeEeecCCcc--eeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence 4457899999999 9999999999987 4599996542 224456899999999999 255899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
++++|++....++.-. .+|...|..+.|+ |++++|++.|.+-++||++++.. ....++|.. .|.+++|++ +.
T Consensus 242 tvklw~~~~e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~-~v~~iaf~~DGS 316 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSK-GVFSIAFQPDGS 316 (459)
T ss_pred ceeeeccCCCcchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhccccc-ccceeEecCCCc
Confidence 9999999865555433 3699999999999 99999999999999999999853 444467776 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.++|||.|..-++||+|+ +.++.-+.+|. .+|.+|+|+|+|.+ +|+|+.|++++|||+|.... ...+
T Consensus 317 L~~tGGlD~~~RvWDlRt---gr~im~L~gH~-------k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r~~-ly~i- 383 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRT---GRCIMFLAGHI-------KEILSVAFSPNGYH-LATGSSDNTCKVWDLRMRSE-LYTI- 383 (459)
T ss_pred eeeccCccchhheeeccc---CcEEEEecccc-------cceeeEeECCCceE-EeecCCCCcEEEeeeccccc-ceec-
Confidence 999999999999999999 89888888876 88999999999865 68999999999999998544 4545
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeeecCCCCCe
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
.+|..-|..|.|.|+... +|+|||.|+++++|... .....+..+...|.|+|+++ +++.
T Consensus 384 ---------pAH~nlVS~Vk~~p~~g~---------fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~ 444 (459)
T KOG0272|consen 384 ---------PAHSNLVSQVKYSPQEGY---------FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQA 444 (459)
T ss_pred ---------ccccchhhheEecccCCe---------EEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCce
Confidence 689999999999996666 89999999999999864 44556666778999999999 6799
Q ss_pred eEEccCCceEEEEe
Q 019258 328 VICSLEWESIAIVS 341 (343)
Q Consensus 328 l~~~~~~~~i~~~~ 341 (343)
+++++-|.+|.+|+
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-38 Score=262.17 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=238.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|-+++|+| ++..|||||.|.+ +++||+..+... ..--.|..-|.|++|+ ++..|++|+.||.|
T Consensus 113 GH~e~Vl~~~fsp----~g~~l~tGsGD~T-----vR~WD~~TeTp~--~t~KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSP----TGSRLVTGSGDTT-----VRLWDLDTETPL--FTCKGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCCCcEEEEEecC----CCceEEecCCCce-----EEeeccCCCCcc--eeecCCccEEEEEEECCCcchhhccccCCeE
Confidence 5889999999999 8999999999975 679999654433 3334688899999999 99999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-------CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-------GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
++||-..++.+ .+...+|+..|++++|. ...+++++.||.|++||+..+. +.....+|.. +|+|++|-.
T Consensus 182 ~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~-~VTCvrwGG 257 (480)
T KOG0271|consen 182 RLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTA-SVTCVRWGG 257 (480)
T ss_pred EEecCCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCcc-ceEEEEEcC
Confidence 99997755433 33345799999999997 4689999999999999999884 6666677777 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc-----------CCCCe--------------
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH-----------PSRKH-------------- 222 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----------p~~~~-------------- 222 (343)
.+++.+++.|++|++|+... +.....+++|. .+|+.++++ |.+..
T Consensus 258 ~gliySgS~DrtIkvw~a~d---G~~~r~lkGHa-------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 258 EGLIYSGSQDRTIKVWRALD---GKLCRELKGHA-------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred CceEEecCCCceEEEEEccc---hhHHHhhcccc-------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 99999999999999999988 78888888876 778888776 33322
Q ss_pred ----------EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 223 ----------TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 223 ----------~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.+++|++|.++++|+-....+|+..+ .+|...|+.+.|+|++. +++++|-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm----------tgHq~lVn~V~fSPd~r----------~IASaSF 387 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM----------TGHQALVNHVSFSPDGR----------YIASASF 387 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhh----------hchhhheeeEEECCCcc----------EEEEeec
Confidence 47899999999999988878888887 89999999999999988 8999999
Q ss_pred CCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 293 DGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 293 dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|..|++|+-.. -...+..+..+|+.++|+. +...|++|+.|-++.+|.
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEE
Confidence 99999998753 3455556778999999998 458999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=261.79 Aligned_cols=279 Identities=15% Similarity=0.191 Sum_probs=227.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc------CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS------HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~------~~~~l~~~ 88 (343)
.|...|-+|+|+| ++..+|+|+.|++ |.+|+-+... ... ..-.|...|++++|. +.++|+++
T Consensus 155 gH~~WVlcvawsP----Dgk~iASG~~dg~-----I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 155 GHKNWVLCVAWSP----DGKKIASGSKDGS-----IRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred CCccEEEEEEECC----CcchhhccccCCe-----EEEecCCCCCcccc--cccCcccceeEEeecccccCCCccceecc
Confidence 5788999999999 9999999999976 6799975432 222 224688899999997 45689999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC-
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA- 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~- 166 (343)
+.||.|+|||+.....+... .+|+.+|+|+.|- ..+++++|.|++|++|+...++ +.+.+.+|.. .|+.++.+
T Consensus 224 skDg~vrIWd~~~~~~~~~l---sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHah-wvN~lalsT 298 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTL---SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAH-WVNHLALST 298 (480)
T ss_pred cCCCCEEEEEccCceEEEEe---ccCccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccch-heeeeeccc
Confidence 99999999999855544443 3799999999999 7899999999999999999885 4455555654 67777665
Q ss_pred ----------C-C-------------------------CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccC
Q 019258 167 ----------S-P-------------------------TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 167 ----------~-~-------------------------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (343)
+ + ..+++|++|.++.+|+... ..+|+....+|. ..
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~--~kkpi~rmtgHq-------~l 369 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK--SKKPITRMTGHQ-------AL 369 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc--cccchhhhhchh-------hh
Confidence 2 1 2499999999999999877 456777777775 77
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
|+.+.|+|++. ++|+++-|..|++||.++++....+ .+|-+.|++++|+.|.. .|++|
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasf-----------RGHv~~VYqvawsaDsR----------LlVS~ 427 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASF-----------RGHVAAVYQVAWSADSR----------LLVSG 427 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhh-----------hhccceeEEEEeccCcc----------EEEEc
Confidence 99999999987 4689999999999999997665554 47999999999998877 89999
Q ss_pred ecCCeEEEEecCCC-c-ccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 291 SEDGILAVVEQGEE-P-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 291 s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|.|.+|++|+-..+ . ..+-.+..-|.++||+| +|+.|++|+.|..+.+|+.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~~ 480 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWRH 480 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeecC
Confidence 99999999996533 2 33334556799999999 7899999999988888863
No 4
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=263.17 Aligned_cols=276 Identities=15% Similarity=0.228 Sum_probs=228.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|+.|+|.| +++.|+||+.-++ +.+|+...=.. ......|..+|.++.|+ ++..+++|..+|.|++|+
T Consensus 98 ~V~~v~WtP----eGRRLltgs~SGE-----FtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 98 PVNVVRWTP----EGRRLLTGSQSGE-----FTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ceeeEEEcC----CCceeEeeccccc-----EEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 599999999 8999999998876 56998833111 12234688999999999 999999999999999998
Q ss_pred ccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~ 175 (343)
.+.+. +.. ....|...|++++|+ +..|++||+||+|++||....+ ..+.+.+|+. .|.+++|+| ..+++++|
T Consensus 167 pnmnn-Vk~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 167 PNMNN-VKI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSVDWHPTKGLIASGS 241 (464)
T ss_pred cchhh-hHH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-CcceeccCCccceeEEcc
Confidence 87322 211 222456899999999 8899999999999999999875 4555567776 799999999 88999999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|+.|++||.|+ +.++.++..|. ..|..+.|+|++ +.|++++.|..++++|+|.......+
T Consensus 242 kDnlVKlWDprS---g~cl~tlh~HK-------ntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~-------- 302 (464)
T KOG0284|consen 242 KDNLVKLWDPRS---GSCLATLHGHK-------NTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTY-------- 302 (464)
T ss_pred CCceeEeecCCC---cchhhhhhhcc-------ceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHh--------
Confidence 999999999999 89998887765 679999999998 56789999999999999964433333
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCccccccc--ccccceeeecCCCCCeeEEcc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAE--PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+|+..|+++.|+|-... .|.+++.||.|..|... +++...... ...|.|+++|| -|..|.+|+
T Consensus 303 ---r~Hkkdv~~~~WhP~~~~---------lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgs 369 (464)
T KOG0284|consen 303 ---RGHKKDVTSLTWHPLNES---------LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGS 369 (464)
T ss_pred ---hcchhhheeecccccccc---------ceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecC
Confidence 579999999999999887 89999999999999876 444444432 57899999999 778888888
Q ss_pred CCceEEEEeCC
Q 019258 333 EWESIAIVSRP 343 (343)
Q Consensus 333 ~~~~i~~~~~~ 343 (343)
-|..+.+|+|+
T Consensus 370 nd~t~rfw~r~ 380 (464)
T KOG0284|consen 370 NDRTVRFWTRN 380 (464)
T ss_pred CCcceeeeccC
Confidence 88899999984
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-35 Score=235.09 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=220.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--LTPH-SQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|.+.|..++-.+ ...+.++++|.|.. +-+|++..++. ..++ ...+|...|..+..+ ++++.++++.|
T Consensus 13 gh~d~Vt~la~~~---~~~~~l~sasrDk~-----ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 13 GHTDWVTALAIKI---KNSDILVSASRDKT-----IIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred CCCceEEEEEeec---CCCceEEEcccceE-----EEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 5889999999999 46789999999964 66999965432 2222 234578899999999 99999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
+++++||+..++...... +|...|.+++++ ..++++|+.|.++++|++.... ...+.+..+...|.|+.|+|
T Consensus 85 ~~lrlWDl~~g~~t~~f~---GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV---GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ceEEEEEecCCcEEEEEE---ecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCC
Confidence 999999999765444332 799999999999 7899999999999999998873 44443332133799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
+..+++++.|++|++||+++ .+....+.+|. +.++.++++|+|. ++++|+.||.+.+||++..+....
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~gh~-------~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRN---CQLRTTFIGHS-------GYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred CCcEEEEccCCceEEEEccCC---cchhhcccccc-------ccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEe
Confidence 56899999999999999998 66656677665 8899999999985 678999999999999998776444
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc---------cccc
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE---------PCAI 315 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~---------~~~i 315 (343)
+ .|...|.+++|+|... .|+ +..+-.|++|+.... ..++..+ ....
T Consensus 230 l------------~a~~~v~sl~fspnry----------wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 230 L------------EAFDIVNSLCFSPNRY----------WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred c------------cCCCeEeeEEecCCce----------eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 3 4889999999999764 344 444455999997432 2232222 2335
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEe
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++|++ +|+.|+||..++.|++|.
T Consensus 287 lslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 287 LSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 7889998 789999999999999985
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=234.94 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=230.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|..||.++.|++ +.++++++|.|+. |-+||.-... ....++.+ .-|..++|+ .+++++.|+.|..
T Consensus 53 GH~~Ki~~~~ws~----Dsr~ivSaSqDGk-----lIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 53 GHLNKIYAMDWST----DSRRIVSASQDGK-----LIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred ccccceeeeEecC----CcCeEEeeccCCe-----EEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCce
Confidence 5888999999999 9999999999974 7799984321 12233444 469999999 8899999999999
Q ss_pred EEEEEccCc--e-eeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 94 LHVLSSAMQ--V-LLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 94 v~v~~~~~~--~-~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
..||++... + ...+.+...+|.+.+.++.|. ...|+++|.|.+..+||+++++ ....+.+|.. .|.++++.|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~g-DV~slsl~p~~ 198 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTG-DVMSLSLSPSD 198 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcc-cEEEEecCCCC
Confidence 999999822 2 234444556899999999998 8999999999999999999995 5666677776 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.+.|++|+-|+..++||+|. +...++|.+|+ +-|++|.|+|+|. -|++|++|+++++||+|..++...+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~---~~c~qtF~ghe-------sDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRS---GQCVQTFEGHE-------SDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred CCeEEecccccceeeeeccC---cceeEeecccc-------cccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeee
Confidence 88999999999999999999 88899999988 7799999999986 4689999999999999997665555
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeeecCCCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDIDPQNP 325 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~~~~~~ 325 (343)
.. ..-..+|++++|+..+. +|++|..|.++.+||.- +..-.|..+...|.++.++| +|
T Consensus 268 s~---------~~~~~gitSv~FS~SGR----------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG 327 (343)
T KOG0286|consen 268 SH---------DSIICGITSVAFSKSGR----------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DG 327 (343)
T ss_pred cc---------CcccCCceeEEEccccc----------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CC
Confidence 41 33456899999999887 78999999999999973 33344555678899999999 55
Q ss_pred CeeEEccCCceEEEEe
Q 019258 326 SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 ~~l~~~~~~~~i~~~~ 341 (343)
--|.+|+=|..++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 5555555556888884
No 7
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-35 Score=234.09 Aligned_cols=285 Identities=16% Similarity=0.166 Sum_probs=229.9
Q ss_pred eeeEEecCCCCCCCCeEEEE--eecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLA--IYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHV 96 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~--s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v 96 (343)
=.+++|+|- ..++|+.+ ..=+-.+.-+|-|.++.+.........+.-+..+.+++|+ .++.+++++.||++++
T Consensus 11 GysvqfSPf---~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 11 GYSVQFSPF---VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred cceeEeccc---ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence 467899993 23333333 2222233446778888654445556667777889999999 7889999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEF 171 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l 171 (343)
||+..... .+...+.|+..|.+++|+ ...++++|.|++||+|+...+. ..+++.+|.. .|+...|+| ++.|
T Consensus 88 ~d~~~~s~--Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~-~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 88 FDLTMPSK--PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNS-CIYQAAFSPHIPNLF 163 (311)
T ss_pred eccCCCCc--chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCcc-EEEEEecCCCCCCeE
Confidence 99763322 122234699999999999 7788999999999999998874 5666777776 899999999 8999
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+++++||+|. +++.+. +..|. ..|.|++|+...++++++|+.|+.|+.||+|+.+.|+..+
T Consensus 164 as~Sgd~~l~lwdvr~--~gk~~~-i~ah~-------~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--- 230 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRS--PGKFMS-IEAHN-------SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--- 230 (311)
T ss_pred EEccCCceEEEEEecC--CCceeE-EEecc-------ceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---
Confidence 9999999999999999 555554 77665 6799999999999999999999999999999999998887
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccc-cccceeeecCCCCCee
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEP-CAINSFDIDPQNPSDV 328 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~-~~i~s~~~~~~~~~~l 328 (343)
.+|.-.|..|+|+|+... .|+|||.|-++++|+.. +...+....+ .-+-.+||++..+.++
T Consensus 231 -------~gh~~AVRkvk~Sph~~~---------lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~v 294 (311)
T KOG0277|consen 231 -------NGHGLAVRKVKFSPHHAS---------LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQV 294 (311)
T ss_pred -------cCCceEEEEEecCcchhh---------HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCcee
Confidence 789999999999999887 89999999999999974 3344555444 4577889988888999
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
++.+=|+.++||+
T Consensus 295 As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 295 ASTGWDELLYVWN 307 (311)
T ss_pred eecccccceeeec
Confidence 9999889999997
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-34 Score=247.50 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=236.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC------------CCCCccCCCCCCeeEEEcc-C
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS------------LTPHSQWTPPTRISSLSTS-H 81 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~------------~~~~~~~~~~~~v~~v~~~-~ 81 (343)
.+|...|..-+|+| .....+++|+.|-. .++|++.++.. -.+..+.+.+..|++++|+ +
T Consensus 175 l~~~~~V~~~~WnP---~~~~llasg~~~s~-----ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 175 LRHESEVFICAWNP---LRDGLLASGSGDST-----ARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred ccCCCceEEEecCc---hhhhhhhccCCccc-----eeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence 34788899999999 45568889988743 56999965211 0112334445689999999 9
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+.+|++|+.||.+++|+..... ......|++||.++.|+ |.+|++++.|+++.+||..++ .+.+.+..|.. +
T Consensus 247 G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~-~ 320 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSA-P 320 (524)
T ss_pred CCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccC-C
Confidence 9999999999999999987332 22234699999999999 999999999999999999998 46677677765 4
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 160 v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
-.++.|-....|++.+.|+.|+++-+.. ..|+.++.+|+ ++|.++.|+|.+. +|+++++|++++||.+.
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~---~~P~~t~~GH~-------g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGE---DRPVKTFIGHH-------GEVNALKWNPTGS-LLASCSDDGTLKIWSMG 389 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecC---CCcceeeeccc-------CceEEEEECCCCc-eEEEecCCCeeEeeecC
Confidence 5789999888999999999999999988 78999999877 8899999999985 78999999999999987
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccce
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINS 317 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s 317 (343)
.......+ .+|...|..+.|+|+++.. .+.+.-+.+++++.|+++++|+.... ...++.+..||++
T Consensus 390 ~~~~~~~l-----------~~Hskei~t~~wsp~g~v~-~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 390 QSNSVHDL-----------QAHSKEIYTIKWSPTGPVT-SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred CCcchhhh-----------hhhccceeeEeecCCCCcc-CCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 74443333 5799999999999998843 22233337999999999999997543 4566677889999
Q ss_pred eeecCCCCCeeEEccCCceEEEEeCC
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++++| +|.++++|+-++.+++|+.+
T Consensus 458 vafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 458 VAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EEecC-CCcEEEecCCCCeeEecccc
Confidence 99999 78999999999999999753
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=251.05 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=208.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|..+|.++.|+|.. ++..+|||+.|+. +++|+++.... +.....|..+|..++|+ ++.+|++++.|.+
T Consensus 214 ~gH~~~v~~~~fhP~~--~~~~lat~s~Dgt-----vklw~~~~e~~--l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVD--SDLNLATASADGT-----VKLWKLSQETP--LQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred eccccceeeEEEccCC--CccceeeeccCCc-----eeeeccCCCcc--hhhhhcchhhheeeeecCCCceeeecccccc
Confidence 3689999999999932 4778999999986 55999965322 12334688899999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
-++||++...++...+ +|..+|.+++|. |..++|||.|..-++||+++++ ...++.+|.. .|.+++|+| +..
T Consensus 285 WRlWD~~tk~ElL~QE---GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k-~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQE---GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIK-EILSVAFSPNGYH 359 (459)
T ss_pred hhhcccccchhhHhhc---ccccccceeEecCCCceeeccCccchhheeecccCc-EEEEeccccc-ceeeEeECCCceE
Confidence 9999999776665554 699999999999 8999999999999999999995 6666677776 899999999 888
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
++||+.|++++|||+|. ..++.++..|. ..|+.|.|.|....++++++.|+++++|..++. .+...+
T Consensus 360 lATgs~Dnt~kVWDLR~---r~~ly~ipAH~-------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksL-- 426 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRM---RSELYTIPAHS-------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSL-- 426 (459)
T ss_pred EeecCCCCcEEEeeecc---cccceeccccc-------chhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhh--
Confidence 99999999999999999 77788888877 779999999977778899999999999998874 444444
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+|++.|.++..+|++. .++++|.|.++++|.+
T Consensus 427 --------aGHe~kV~s~Dis~d~~----------~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 427 --------AGHEGKVISLDISPDSQ----------AIATSSFDRTIKLWRP 459 (459)
T ss_pred --------cCCccceEEEEeccCCc----------eEEEeccCceeeeccC
Confidence 68999999999999988 7999999999999963
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-32 Score=236.10 Aligned_cols=278 Identities=14% Similarity=0.153 Sum_probs=225.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.+..+.|++++|+. ++.+||||++|+. +++|+.+.... ...-.|.++|.+++|. .+++|++++-||+
T Consensus 232 ~~~nkdVT~L~Wn~----~G~~LatG~~~G~-----~riw~~~G~l~---~tl~~HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNN----DGTLLATGSEDGE-----ARIWNKDGNLI---STLGQHKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred CCccCCcceEEecC----CCCeEEEeecCcE-----EEEEecCchhh---hhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence 34557899999999 9999999999986 77999965321 2234689999999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
+.+||...++..+..+ .|..+-.++.|- ...|++++.||.+.++.+.... +...+.+|+. .|.+++|+| +.+|
T Consensus 300 tilwd~~~g~~~q~f~---~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g-~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFE---FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHG-EVNALKWNPTGSLL 374 (524)
T ss_pred EEEEeccCceEEEeee---eccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccC-ceEEEEECCCCceE
Confidence 9999997665544443 477787889998 8999999999999999998774 5555556666 899999999 8999
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC--------eEEEEEecCCcEEEEEccCCce
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK--------HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--------~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+++++|++++||...+ ......+..|. ..|..+.|+|.++ ..+++++.|++|++||+..+..
T Consensus 375 aS~SdD~TlkiWs~~~---~~~~~~l~~Hs-------kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQ---SNSVHDLQAHS-------KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEecCCCeeEeeecCC---Ccchhhhhhhc-------cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999877 55666666665 6688888888754 4678999999999999988544
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDP 322 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~ 322 (343)
... + ..|..+|++|+|+|++. ++++|+-||.|.+|+.+.. ....+...+-|..+.|+-
T Consensus 445 i~~-f----------~kH~~pVysvafS~~g~----------ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 445 IHT-L----------MKHQEPVYSVAFSPNGR----------YLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred eEe-e----------ccCCCceEEEEecCCCc----------EEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcC
Confidence 444 4 57999999999999988 8999999999999997643 444455567799999997
Q ss_pred CCCCeeEEccCCceEEEEe
Q 019258 323 QNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~ 341 (343)
+|++|.....++.+.+.+
T Consensus 504 -~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 -AGDKLGACASDGSVCVLD 521 (524)
T ss_pred -CCCEEEEEecCCCceEEE
Confidence 457776666777877764
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-32 Score=216.56 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=222.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC--CCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW--TPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~--~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|.++|-.++|+| ..+..|+|++.|+. |++|+..+.....|...+ .|...|.+++|+ .+++|+++|.|.
T Consensus 12 gh~~r~W~~awhp---~~g~ilAscg~Dk~-----vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 12 GHKDRVWSVAWHP---GKGVILASCGTDKA-----VRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CCCCcEEEEEecc---CCceEEEeecCCce-----EEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4667899999999 34779999999965 779999754445444333 577899999999 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC--ceEEEEEcCCCccceEEEEeCC-
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG--GEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
++.||.-... ++.......+|...|.+++|+ |.+|++|++|..|-+|.+..+ -.+..+++.|.. -|..+.|+|
T Consensus 84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCC
Confidence 9999987632 232333334799999999999 999999999999999998743 245667777766 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
..+|+++++|++|++|+-..++.=.+..++.++. .-|.+++|+|.|.. ++++++|++|+||-++. .+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-------~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~-----~~ 228 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-------NTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYT-----DL 228 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCcc-------ceEEEEEecCCCce-EEEecCCcceEeeeecc-----Cc
Confidence 8999999999999999876412224566677665 57999999999854 58999999999998663 12
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC----cccccc-----ccccccee
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE----PFELLA-----EPCAINSF 318 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~----~~~~~~-----~~~~i~s~ 318 (343)
. ..|..+++.+.|. +. .++|++.|+.|+++..... ...++. +...||++
T Consensus 229 ~----------~~~sr~~Y~v~W~--~~----------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 229 S----------GMHSRALYDVPWD--NG----------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred c----------hhcccceEeeeec--cc----------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 2 4578899999999 33 6999999999999976432 223332 13579999
Q ss_pred eecCCCCCeeEEccCCceEEEEe
Q 019258 319 DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++|.....|++|+|||.+.+|.
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEE
Confidence 99996578999999999999986
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=218.55 Aligned_cols=266 Identities=15% Similarity=0.160 Sum_probs=210.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENS 111 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~ 111 (343)
+.-+|||+|||.+ |++|.... ..|..+++|+ +.|+.++...+..++++.....|++||++...+..+...+
T Consensus 9 ~~viLvsA~YDhT-----IRfWqa~t---G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 9 DPVILVSAGYDHT-----IRFWQALT---GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred CceEEEeccCcce-----eeeeehhc---CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe
Confidence 5578999999976 77999954 6778888886 6899999994444444456678999999955443333332
Q ss_pred CccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEcccc
Q 019258 112 GFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRA 188 (343)
Q Consensus 112 ~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~ 188 (343)
+|.+.|+++.|. |...++||+||++++||++.. .+.+.+... + +|+++..+| +..|+++..+|.|++||++.
T Consensus 81 -~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~~~-s-pVn~vvlhpnQteLis~dqsg~irvWDl~~- 155 (311)
T KOG0315|consen 81 -GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQHN-S-PVNTVVLHPNQTELISGDQSGNIRVWDLGE- 155 (311)
T ss_pred -ccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhccCC-C-CcceEEecCCcceEEeecCCCcEEEEEccC-
Confidence 699999999998 999999999999999999996 466666554 3 799999999 88999999999999999988
Q ss_pred CCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-----eeeeeecCCCCcccccCCccc
Q 019258 189 GSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ-----QSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~h~~ 263 (343)
......+..... .+|.++...|+|.. ++++...|.+++|++-... .|+..+ +.|++
T Consensus 156 --~~c~~~liPe~~------~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~----------~ah~~ 216 (311)
T KOG0315|consen 156 --NSCTHELIPEDD------TSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKF----------QAHNG 216 (311)
T ss_pred --CccccccCCCCC------cceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhhe----------ecccc
Confidence 434334333221 67999999999875 5778899999999986533 244444 78999
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccc--cccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLA--EPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
-+....++|++. +|++||.|.++++|+.... ..++.- +...+...+|+. +|.||+.|+.|...++|
T Consensus 217 ~il~C~lSPd~k----------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVK----------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCc----------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeec
Confidence 999999999988 8999999999999998654 223322 245799999998 67999999999999888
Q ss_pred e
Q 019258 341 S 341 (343)
Q Consensus 341 ~ 341 (343)
.
T Consensus 286 ~ 286 (311)
T KOG0315|consen 286 D 286 (311)
T ss_pred c
Confidence 5
No 13
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=231.35 Aligned_cols=288 Identities=15% Similarity=0.168 Sum_probs=231.7
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-C---CCe
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-H---QSL 84 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~---~~~ 84 (343)
|..++-+.|++.|++|.-.+ ++++||+||+. +++|+..++.. +...+|.++|.+++|. . ...
T Consensus 96 P~pl~~~~hdDWVSsv~~~~------~~IltgsYDg~-----~riWd~~Gk~~---~~~~Ght~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGAS------KWILTGSYDGT-----SRIWDLKGKSI---KTIVGHTGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred CCccccccchhhhhhhcccC------ceEEEeecCCe-----eEEEecCCceE---EEEecCCcceeeeEEEecCCccce
Confidence 55778888888888887654 68999999986 66999976432 4556899999999998 2 235
Q ss_pred EEEEcCCCcEEEEEccCceee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-----------------
Q 019258 85 VAASTLSGSLHVLSSAMQVLL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG----------------- 144 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~----------------- 144 (343)
|++++.|.++++|..+.++.. .......+|.+.|-+++.. +..+++++.|.+|++|+..+
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999999999854432 2223334899999999987 99999999999999999311
Q ss_pred -------CceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 145 -------GGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 145 -------~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
.+.+...+.+|.. +|.++.|.+...+.+++.|.+|+.||+.. +....++... ..++|++.+
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d~~v~yS~SwDHTIk~WDlet---g~~~~~~~~~--------ksl~~i~~~ 309 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTE-PVSSVVWSDATVIYSVSWDHTIKVWDLET---GGLKSTLTTN--------KSLNCISYS 309 (423)
T ss_pred hhhhcccccCceEEeccccc-ceeeEEEcCCCceEeecccceEEEEEeec---ccceeeeecC--------cceeEeecc
Confidence 0124455677777 89999999988999999999999999999 6776666643 669999999
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|. ..++++|+.|..+++||.|++......+ ...+|.+.|.++.|+|.+.. +|+++|.||+++
T Consensus 310 ~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~--------s~~gH~nwVssvkwsp~~~~---------~~~S~S~D~t~k 371 (423)
T KOG0313|consen 310 PL-SKLLASGSSDRHIRLWDPRTGDGSVVSQ--------SLIGHKNWVSSVKWSPTNEF---------QLVSGSYDNTVK 371 (423)
T ss_pred cc-cceeeecCCCCceeecCCCCCCCceeEE--------eeecchhhhhheecCCCCce---------EEEEEecCCeEE
Confidence 96 4688999999999999999875433222 01579999999999999998 999999999999
Q ss_pred EEecCC---CcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 298 VVEQGE---EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 298 ~~~~~~---~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+||-.. ....+..+...|.+++|+. +..+++|+-|..|++++.
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 999753 3345555677899999995 589999999999999864
No 14
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=241.91 Aligned_cols=276 Identities=13% Similarity=0.165 Sum_probs=229.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.++++|-+|.++| -.++++++-+.++ +.||+...+.. ..++.- .-+|.+.+|. ..+.+++|+.|..
T Consensus 11 ~rSdRVKsVd~HP----tePw~la~LynG~-----V~IWnyetqtm---VksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 11 SRSDRVKSVDFHP----TEPWILAALYNGD-----VQIWNYETQTM---VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred ccCCceeeeecCC----CCceEEEeeecCe-----eEEEeccccee---eeeeeecccchhhheeeeccceEEEecCCce
Confidence 4889999999999 6778999999876 56999965432 334443 3588999998 8999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PT 169 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 169 (343)
|+||++++.+.+...+ +|..-|.++.++ ..+++|+|+|-+|++||.++.-.+.+.+++|.- .|.+++|+| .+
T Consensus 79 IrVfnynt~ekV~~Fe---AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H-yVMqv~fnPkD~n 154 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFE---AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH-YVMQVAFNPKDPN 154 (794)
T ss_pred EEEEecccceeeEEee---ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce-EEEEEEecCCCcc
Confidence 9999999776665443 799999999999 889999999999999999998888899999887 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-CeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-KHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.|++++.|++|++|.+.+ ..+..++++|. ..|+||++-|-+ ...+++|++|.+|++||..+..+...+
T Consensus 155 tFaS~sLDrTVKVWslgs---~~~nfTl~gHe-------kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL- 223 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGS---PHPNFTLEGHE-------KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL- 223 (794)
T ss_pred ceeeeeccccEEEEEcCC---CCCceeeeccc-------cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-
Confidence 999999999999999988 78888999887 669999998765 235679999999999999886555444
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~ 326 (343)
++|..-|..+.|||.-+ .++|||+||++++|+...-. ..+...-..+.++.-.+. +.
T Consensus 224 ----------eGHt~Nvs~v~fhp~lp----------iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~-~~ 282 (794)
T KOG0276|consen 224 ----------EGHTNNVSFVFFHPELP----------IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKG-DG 282 (794)
T ss_pred ----------hcccccceEEEecCCCc----------EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCC-CC
Confidence 67999999999999988 79999999999999975322 233333467888887764 46
Q ss_pred eeEEccCCceEEE
Q 019258 327 DVICSLEWESIAI 339 (343)
Q Consensus 327 ~l~~~~~~~~i~~ 339 (343)
.++.|.|.+.|.+
T Consensus 283 ~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 283 KIAVGFDEGSVTV 295 (794)
T ss_pred eEEEeccCCcEEE
Confidence 7888888877654
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-32 Score=217.68 Aligned_cols=240 Identities=17% Similarity=0.163 Sum_probs=197.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCce-ee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQV-LL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~-~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
-.|++.|..++-. +.+.|++++.|.++.+|++.... .. ...+...+|...|..+..+ ++++++++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 3688999999987 67899999999999999998331 11 2233345799999999988 99999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
+.++ +..+.+.+|.. .|.+++|++ +..+++|+.|++|++|+... .+..++.... +.++|.|+.|+|+.
T Consensus 92 l~~g-~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g----~ck~t~~~~~-----~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 92 LATG-ESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----VCKYTIHEDS-----HREWVSCVRFSPNE 160 (315)
T ss_pred ecCC-cEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecc----cEEEEEecCC-----CcCcEEEEEEcCCC
Confidence 9998 46666777776 799999999 88999999999999999966 4444433221 12889999999985
Q ss_pred -CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 221 -KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 221 -~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
..++++++.|++|++||+++.+....+ .+|.+.++.+.++||+. ..++|+.||.+.+|
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----------~gh~~~v~t~~vSpDGs----------lcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTF-----------IGHSGYVNTVTVSPDGS----------LCASGGKDGEAMLW 219 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhcc-----------ccccccEEEEEECCCCC----------EEecCCCCceEEEE
Confidence 567889999999999999986554444 47999999999999998 79999999999999
Q ss_pred ecCCCc-ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQGEEP-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|..+.. ...+....+|+++.|+|+ .+.+|..-...|.||+
T Consensus 220 dL~~~k~lysl~a~~~v~sl~fspn--rywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 220 DLNEGKNLYSLEAFDIVNSLCFSPN--RYWLCAATATSIKIWD 260 (315)
T ss_pred EccCCceeEeccCCCeEeeEEecCC--ceeEeeccCCceEEEe
Confidence 987543 344455689999999994 8888888888999996
No 16
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-30 Score=254.97 Aligned_cols=279 Identities=17% Similarity=0.140 Sum_probs=216.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-----CCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-----ASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-----~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
.|...|.+++|+| ++++||||+.|+. |++|++... ....+...+.+...|.+++|+ .+.+|+++
T Consensus 481 ~~~~~V~~i~fs~----dg~~latgg~D~~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 481 NSSNLVCAIGFDR----DGEFFATAGVNKK-----IKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCCcEEEEEECC----CCCEEEEEeCCCE-----EEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEE
Confidence 3778899999999 8899999999975 679997431 111123334456789999998 56889999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+.||.|++||+...+.+... ..|.+.|++++|+ +..|++|+.||+|++||++++. ....+..+. .+.++.|
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~---~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~~--~v~~v~~ 625 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEM---KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTKA--NICCVQF 625 (793)
T ss_pred eCCCeEEEEECCCCeEEEEe---cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecCC--CeEEEEE
Confidence 99999999999865544333 3699999999997 5789999999999999999874 444444443 5899999
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ- 242 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~- 242 (343)
.+ +..+++|+.|+.|++||++. ...++..+.+|. ..|.++.|.+ +. .+++++.|++|++||++...
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~--~~~~~~~~~~h~-------~~V~~v~f~~-~~-~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRN--PKLPLCTMIGHS-------KTVSYVRFVD-SS-TLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCC--CCccceEecCCC-------CCEEEEEEeC-CC-EEEEEECCCEEEEEeCCCCcc
Confidence 65 78899999999999999988 233555666554 7799999974 33 57899999999999998532
Q ss_pred ----eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-c-----------
Q 019258 243 ----QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-F----------- 306 (343)
Q Consensus 243 ----~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~----------- 306 (343)
.+.... .+|...+..+.|+|++. +|++|+.||.|++|+..... .
T Consensus 695 ~~~~~~l~~~----------~gh~~~i~~v~~s~~~~----------~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 695 GINETPLHSF----------MGHTNVKNFVGLSVSDG----------YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred ccCCcceEEE----------cCCCCCeeEEEEcCCCC----------EEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 233333 57889999999999977 89999999999999964321 0
Q ss_pred ---cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 ---ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 ---~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
........|+++.|+| ++..|++|++++.|.+|+
T Consensus 755 ~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILE 791 (793)
T ss_pred cccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEe
Confidence 0011124699999998 679999999999999996
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-32 Score=246.10 Aligned_cols=241 Identities=16% Similarity=0.236 Sum_probs=205.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-----------------------------CCCCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-----------------------------ASLTPHS 66 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-----------------------------~~~~~~~ 66 (343)
+..+-++|..+++ +..++|.|-.|. ++++|++... .......
T Consensus 376 nt~~~v~ca~fSd----dssmlA~Gf~dS-----~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 376 NTYQGVTCAEFSD----DSSMLACGFVDS-----SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EcCCcceeEeecC----Ccchhhcccccc-----EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 5667799999999 778898888774 4779988420 0112233
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
..+|.++|..+.|+ +.++|+++|.|+++|+|.+.....+...+ +|..||.+++|+ |-+|+|+|.|++-++|..+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec---CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 46799999999999 88999999999999999998665555443 799999999999 9999999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
.. .+.+++.+|-+ .|.|++|+| .++++||+.|.++|+||..+ +..++.|.+|. ++|.+++|+|.|.+
T Consensus 524 ~~-~PlRifaghls-DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~---G~~VRiF~GH~-------~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 524 HN-KPLRIFAGHLS-DVDCVSFHPNSNYVATGSSDRTVRLWDVST---GNSVRIFTGHK-------GPVTALAFSPCGRY 591 (707)
T ss_pred cC-Cchhhhccccc-ccceEEECCcccccccCCCCceEEEEEcCC---CcEEEEecCCC-------CceEEEEEcCCCce
Confidence 87 58888888876 899999999 99999999999999999999 88888898876 89999999999975
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++|++||.|++||+..+.. +..+ .+|++.|.+|.|++++. .|+++|.|.+|++||..
T Consensus 592 -LaSg~ed~~I~iWDl~~~~~-v~~l----------~~Ht~ti~SlsFS~dg~----------vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 592 -LASGDEDGLIKIWDLANGSL-VKQL----------KGHTGTIYSLSFSRDGN----------VLASGGADNSVRLWDLT 649 (707)
T ss_pred -EeecccCCcEEEEEcCCCcc-hhhh----------hcccCceeEEEEecCCC----------EEEecCCCCeEEEEEch
Confidence 58999999999999998544 3433 57999999999999988 79999999999999863
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=213.33 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=224.6
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEE
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
.|.+....|...|+.++|+| ++.+||||++|.. |-+|++.++.+.. -..-.|.++|..+.|. +++.+++
T Consensus 38 ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~-----I~LWnv~gdceN~-~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRA-----IVLWNVYGDCENF-WVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred chhhhcCCCcceEEEEEECC----CCCeEeecCCcce-----EEEEeccccccce-eeeccccceeEeeeeccCCCEEEE
Confidence 34556667888999999999 8999999999976 6699985443221 1122799999999999 9999999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.|.+++.||.+.++... ..+.|..-|+++... + ..+.|++.||++++||+++. ...+++.... .++++.
T Consensus 108 ~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~~ky--qltAv~ 181 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFENKY--QLTAVG 181 (338)
T ss_pred ecCCceEEEEecccceeee---hhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccccce--eEEEEE
Confidence 9999999999998665443 234688899999877 4 45668899999999999987 3566655454 499999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-- 241 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-- 241 (343)
|.. ...+++|+-|+.|++||+|. ......+.+|. ++|+.+..+|.+..+ ++-+-|.++++||+|--
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~---~d~~~~lsGh~-------DtIt~lsls~~gs~l-lsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRK---NDGLYTLSGHA-------DTITGLSLSRYGSFL-LSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ecccccceeeccccCceeeecccc---CcceEEeeccc-------CceeeEEeccCCCcc-ccccccceEEEEEecccCC
Confidence 999 88999999999999999999 78888888887 889999999998765 58889999999999852
Q ss_pred cee-eeeecCCCCcccccCCc--cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccc
Q 019258 242 QQS-IVLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAIN 316 (343)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~ 316 (343)
.++ +.+... ..| +.-....+|+|++. .+-++|.|..+++|+.... ...+-.+-..||
T Consensus 251 ~~R~v~if~g--------~~hnfeknlL~cswsp~~~----------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 251 SQRCVKIFQG--------HIHNFEKNLLKCSWSPNGT----------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred CCceEEEeec--------chhhhhhhcceeeccCCCC----------ccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 222 222211 223 33457788999887 7899999999999998643 233334457999
Q ss_pred eeeecCCCCCeeEEccCCceEEE
Q 019258 317 SFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.++++|.. .++.+.+.|.+||+
T Consensus 313 ~~~Fhp~e-~iils~~sdk~i~l 334 (338)
T KOG0265|consen 313 EVDFHPTE-PIILSCSSDKTIYL 334 (338)
T ss_pred EeeecCCC-cEEEEeccCceeEe
Confidence 99999954 78888888888886
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-30 Score=211.08 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=199.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
-+|.+.|.++.|+ +.+++++++.||.+.|||..+.......+ .-..-|..+++. ++.+++|+.|+...+|++.+
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 3688999999999 99999999999999999987433332222 123457788887 89999999999999999975
Q ss_pred C--c---eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 145 G--G---EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 145 ~--~---~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
. . ++.+.+.+|.. .+.|..|.+.+.++|++.|.+..+||+++ ++.+..|.+|. +-|.++++.|.
T Consensus 129 ~d~~g~~~v~r~l~gHtg-ylScC~f~dD~~ilT~SGD~TCalWDie~---g~~~~~f~GH~-------gDV~slsl~p~ 197 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTG-YLSCCRFLDDNHILTGSGDMTCALWDIET---GQQTQVFHGHT-------GDVMSLSLSPS 197 (343)
T ss_pred ccccccceeeeeecCccc-eeEEEEEcCCCceEecCCCceEEEEEccc---ceEEEEecCCc-------ccEEEEecCCC
Confidence 3 1 34555667776 89999999988999999999999999999 88888899887 77999999996
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
..+.|++|+.|+..++||+|.+...+.+ .+|+..|++|.|+|++. .+++||+|++.+++
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF-----------~ghesDINsv~ffP~G~----------afatGSDD~tcRly 256 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTF-----------EGHESDINSVRFFPSGD----------AFATGSDDATCRLY 256 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEee-----------cccccccceEEEccCCC----------eeeecCCCceeEEE
Confidence 6788999999999999999998666665 47999999999999988 69999999999999
Q ss_pred ecCCC-ccccccc---ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQGEE-PFELLAE---PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~~~~-~~~~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.... ...++.. .++|+|++|+- .|++|++|++|....+|.
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEee
Confidence 87532 2233333 47899999997 789999999999999996
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=231.50 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=204.4
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc-CCCeEEEEcC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
....|++.|.+|.|++ ++.++++|..++. |+.|+..-+. ...... |...|.+++|+ ++..|++++.
T Consensus 133 ilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~-----iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~Sd 200 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSH----NGTWMISGDKGGM-----IKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSD 200 (464)
T ss_pred HhhhhcccceeEEEcc----CCCEEEEcCCCce-----EEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecC
Confidence 3446889999999999 8999999988754 6799884322 122233 44789999999 8889999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
||+|+|||.....+-.++ .+|.-.|.+++|. ...++++|.|..|++||.+++. +...+..|.. .|..+.|++
T Consensus 201 Dg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKn-tVl~~~f~~n 275 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKN-TVLAVKFNPN 275 (464)
T ss_pred CCeEEEEeccCCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccc-eEEEEEEcCC
Confidence 999999999844333333 4799999999999 7789999999999999999995 5555566665 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
++.|+|++.|..++++|+|. -+.+..+.+|. ..++++.|||-.+.+|.+|+.||.|..|.+.. +.|+..
T Consensus 276 ~N~Llt~skD~~~kv~DiR~---mkEl~~~r~Hk-------kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-~~p~~~ 344 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRT---MKELFTYRGHK-------KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-EEPLGE 344 (464)
T ss_pred CCeeEEccCCceEEEEehhH---hHHHHHhhcch-------hhheeeccccccccceeeccCCCceEEEeccc-cccccC
Confidence 99999999999999999997 57777788776 77999999999999999999999999999874 555554
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.. .+|...||+++|||-+. .|+++|.|.+++.|....
T Consensus 345 i~---------~AHd~~iwsl~~hPlGh----------il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 345 IP---------PAHDGEIWSLAYHPLGH----------ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred CC---------cccccceeeeeccccce----------eEeecCCCcceeeeccCC
Confidence 42 78999999999999987 799999999999997643
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=217.49 Aligned_cols=274 Identities=12% Similarity=0.143 Sum_probs=222.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|...|.+|+.-| .+++|+|||.|++ ++|||+.. ..+..+++ |-..|..++++ .-.+|++++.|+.|
T Consensus 150 HlgWVr~vavdP----~n~wf~tgs~Drt-----ikIwDlat---g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 150 HLGWVRSVAVDP----GNEWFATGSADRT-----IKIWDLAT---GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ccceEEEEeeCC----CceeEEecCCCce-----eEEEEccc---CeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 667899999999 7999999999986 56999954 34444444 88899999999 77899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
+.||+..++ +++...+|-..|.+++.. .+.+++|+.|.++++||+++.. ....+.+|.. +|..+.+.+ ...+
T Consensus 218 KCwDLe~nk---vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~-~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 218 KCWDLEYNK---VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTN-PVASVMCQPTDPQV 292 (460)
T ss_pred EEEechhhh---hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCC-cceeEEeecCCCce
Confidence 999998544 344455899999999998 8899999999999999999984 6666677887 899999998 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++|+.|++|++||++. ++....+..|. ..+.+++.||.. +.||+++.| .|+-|++-.+..... +
T Consensus 293 it~S~D~tvrlWDl~a---gkt~~tlt~hk-------ksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~n-l--- 356 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRA---GKTMITLTHHK-------KSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQN-L--- 356 (460)
T ss_pred EEecCCceEEEeeecc---CceeEeeeccc-------ceeeEEecCCch-hhhhccCCc-cceeccCCccchhhc-c---
Confidence 9999999999999999 88888877665 679999999974 678888776 799999987665555 3
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccc---ccc------cccceeeec
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELL---AEP------CAINSFDID 321 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~---~~~------~~i~s~~~~ 321 (343)
.+|.+-|+++..+.++ .+++|++.|.|..||..... .+.. ..+ ..|.+-.++
T Consensus 357 -------sgh~~iintl~~nsD~-----------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 357 -------SGHNAIINTLSVNSDG-----------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred -------ccccceeeeeeeccCc-----------eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 5799999999998765 68999999999998865432 2211 122 235555555
Q ss_pred CCCCCeeEEccCCceEEEEeC
Q 019258 322 PQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. .|..|+++..|..|.+|+.
T Consensus 419 k-tg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 419 K-TGSRLITGEADKTIKMYKE 438 (460)
T ss_pred c-cCceEEeccCCcceEEEec
Confidence 3 5689999999999999974
No 22
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=4.4e-31 Score=226.56 Aligned_cols=265 Identities=14% Similarity=0.191 Sum_probs=209.0
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCC--------CCccCCCCCCeeEEEcc--C
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLT--------PHSQWTPPTRISSLSTS--H 81 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~--------~~~~~~~~~~v~~v~~~--~ 81 (343)
..++.|...|+.++..| +++..++|++..++ +.||+....+... .+....|.++-.+++|+ .
T Consensus 118 ~~~i~h~gEVnRaRymP---Qnp~iVAt~t~~~d-----v~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMP---QNPNIVATKTSSGD-----VYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred EEeccCCccchhhhhCC---CCCcEEEecCCCCC-----EEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 45688999999999999 77888888877665 5599985432211 12345677778889999 7
Q ss_pred CCeEEEEcCCCcEEEEEccCce----eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC-CceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQV----LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG-GGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~ 153 (343)
...|++++.|+.|++||+.... .+.......+|...|..++|. ...|.+++.|+.+.+||+++ ..++.....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 7889999999999999998322 233334456799999999998 78899999999999999995 224555556
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.|.. .+.|++|+| ...|+||+.|++|++||+|. ..+++..+.+|. ..|.+|.|+|....++|+++.|+
T Consensus 270 ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn--L~~~lh~~e~H~-------dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 270 AHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRN--LNKPLHTFEGHE-------DEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred ccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechh--cccCceeccCCC-------cceEEEEeCCCCCceeEecccCC
Confidence 6666 899999999 77899999999999999999 778888888887 78999999999999999999999
Q ss_pred cEEEEEccCCceeee---eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWDLRWQQQSIV---LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.+||+.+-...+. -......-.+.+.+|...|..+.|+|..+- .++|.++|+.|.||+..+
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW---------~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW---------TIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe---------EEEEecCCceEEEeeccc
Confidence 999999965332211 000000111234789999999999999997 789999999999999754
No 23
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=7e-31 Score=225.30 Aligned_cols=246 Identities=20% Similarity=0.245 Sum_probs=200.8
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeee-------eeccCCccccCeEEEEec---CCEEEEEeCCC
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLS-------VDENSGFHVGPISGVDLT---GSECVSVGEDG 135 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg 135 (343)
+.|+++|+.+.+. +...+++.+..+.|.|||..+..... ..-...+|.+.-.++.|+ ...+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 6788999999998 77888889999999999997322111 111234688888899999 77899999999
Q ss_pred cEEEEECCCCc------eEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc
Q 019258 136 RVNLVSVIGGG------EFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA 207 (343)
Q Consensus 136 ~v~~wd~~~~~------~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (343)
+|.+||+.... .+...+..|.. .|..++|++ ..+|.++++|+.+.|||+|++ ..++......|.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~------ 272 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHS------ 272 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCc-ceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccC------
Confidence 99999996521 34566777777 899999999 889999999999999999962 245555566665
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
++++|++|+|.+.++||+|+.|++|++||+|+..++...+ ..|+..|.+|.|+|+... .|
T Consensus 273 -~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~----------e~H~dev~~V~WSPh~et---------vL 332 (422)
T KOG0264|consen 273 -AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF----------EGHEDEVFQVEWSPHNET---------VL 332 (422)
T ss_pred -CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec----------cCCCcceEEEEeCCCCCc---------ee
Confidence 8899999999999999999999999999999998888877 889999999999999987 89
Q ss_pred EEEecCCeEEEEecCCC------------ccccccc----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGEE------------PFELLAE----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~------------~~~~~~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|++.|+++.+||.... +.+++.. -..|+.|+|+|+.+-.+++.++|..+.||+
T Consensus 333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999999999996432 2333322 267999999998766777777888888986
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.2e-30 Score=214.23 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=226.1
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
+-..|..+-++| +-..++++|.|.+ |++||+...+. ... -+|...|.++.|. .+.+|++++.|-.+
T Consensus 107 ~r~~vt~v~~hp----~~~~v~~as~d~t-----ikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 107 HRSSVTRVIFHP----SEALVVSASEDAT-----IKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred cccceeeeeecc----CceEEEEecCCce-----EEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccch
Confidence 456788888888 6777888888854 77999965332 222 3688889999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||.... ....+...+|.-.|.++.+- +++++|++.|.+|+.|++.++ .+...+.+|.. .|..++.+. +..+
T Consensus 175 ~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~e-wvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 175 KLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSE-WVRMVRVNQDGTII 250 (406)
T ss_pred hheeHHHH--HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchH-hEEEEEecCCeeEE
Confidence 99999742 22233444688889999887 999999999999999999999 57777777776 899999888 7888
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--------------CeEEEEEecCCcEEEEE
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--------------KHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--------------~~~~~sg~~dg~v~iwd 237 (343)
++++.|.+|++|-+.+ .++...+..|+ .+|.|++|-|.. ..++.+++.|++|++||
T Consensus 251 As~s~dqtl~vW~~~t---~~~k~~lR~hE-------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVAT---KQCKAELREHE-------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred EecCCCceEEEEEecc---chhhhhhhccc-------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 9999999999999988 55555566665 779999998741 24788999999999999
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccccccc
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAI 315 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i 315 (343)
+.++.....+. +|...|.+++|+|.+. +|+||.+|++|++|+.+.. ...+..+..-+
T Consensus 321 v~tg~cL~tL~-----------ghdnwVr~~af~p~Gk----------yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 321 VSTGMCLFTLV-----------GHDNWVRGVAFSPGGK----------YILSCADDKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred ccCCeEEEEEe-----------cccceeeeeEEcCCCe----------EEEEEecCCcEEEEEeccceeeeccCCCccee
Confidence 99987766664 6999999999999998 8999999999999998643 33444445678
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+++|++. +..+|++|+=+..+.+|..
T Consensus 380 t~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCC-CCceEEeccccceeeeeec
Confidence 9999997 4589999999999999864
No 25
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.2e-31 Score=209.47 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=206.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
++.+|...+....|+|++ ...+.+++++.|+. |++|+++.+..+ ....-+|..+|.++.|. +.+.++++
T Consensus 53 e~~s~d~~D~LfdV~Wse---~~e~~~~~a~GDGS-----Lrl~d~~~~s~P-i~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSE---NHENQVIAASGDGS-----LRLFDLTMPSKP-IHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred EEEeeecccceeEeeecC---CCcceEEEEecCce-----EEEeccCCCCcc-hhHHHhhhhheEEeccccccceeEEee
Confidence 566777888999999999 45678889998964 889998543322 22334688999999999 77788899
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|.||+|++|+...++.+... ++|..-|....|+ .+.|+++|.|+++++||++...+... ++.|.. .+.|+.|
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~-Eil~cdw 198 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNS-EILCCDW 198 (311)
T ss_pred ccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccc-eeEeecc
Confidence 99999999998865555443 4699999999998 89999999999999999987433444 556664 7999999
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+. .+.++||+.|+.|+.||+|+ -..|+..+.+|. -.|..+.|+|....++++++.|=+++|||...+..
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~--~r~pl~eL~gh~-------~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRN--LRTPLFELNGHG-------LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhh--ccccceeecCCc-------eEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 88 77899999999999999998 667888887776 77999999999999999999999999999876554
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+... ..|..-|..+.|++..+. ++++++-|+.+++|++
T Consensus 270 ~~e~~----------~~HtEFv~g~Dws~~~~~---------~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIETV----------DHHTEFVCGLDWSLFDPG---------QVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhh----------hccceEEeccccccccCc---------eeeecccccceeeecc
Confidence 44443 568899999999999887 9999999999999986
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1e-28 Score=213.86 Aligned_cols=277 Identities=18% Similarity=0.197 Sum_probs=214.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| +++++++++.|+. +++|++..... ......|...+..+.|+ +++.|++++.+|.|
T Consensus 7 ~h~~~i~~~~~~~----~~~~l~~~~~~g~-----i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 7 GHTGGVTCVAFSP----DGKLLATGSGDGT-----IKVWDLETGEL--LRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred ccCCCEEEEEEcC----CCCEEEEeecCcE-----EEEEEeeCCCc--EEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 5778999999999 7899999998864 77999965331 12233566788899999 66799999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+..... ..|...+.++.|. +..+++++.||.+.+||+++++ ....+..+.. .+.+++|++ +..+
T Consensus 76 ~i~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~l 150 (289)
T cd00200 76 RLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTD-WVNSVAFSPDGTFV 150 (289)
T ss_pred EEEEcCcccceEEE---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCC-cEEEEEEcCcCCEE
Confidence 99999854333322 2577899999998 4677777779999999999764 4444444554 799999999 6666
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. .+++..+..+. ..+.+++|+|++..+ ++++.||.|++||++.... ....
T Consensus 151 ~~~~~~~~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~~~-~~~~--- 215 (289)
T cd00200 151 ASSSQDGTIKLWDLRT---GKCVATLTGHT-------GEVNSVAFSPDGEKL-LSSSSDGTIKLWDLSTGKC-LGTL--- 215 (289)
T ss_pred EEEcCCCcEEEEEccc---cccceeEecCc-------cccceEEECCCcCEE-EEecCCCcEEEEECCCCce-ecch---
Confidence 6666699999999987 66676776544 679999999988655 5677799999999987433 3333
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-C-cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-E-PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~-~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
..|...+.++.|+|++. .+++++.||.|++|+... . ...+..+...+.++++++ ++.+++
T Consensus 216 -------~~~~~~i~~~~~~~~~~----------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 277 (289)
T cd00200 216 -------RGHENGVNSVAFSPDGY----------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLA 277 (289)
T ss_pred -------hhcCCceEEEEEcCCCc----------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEE
Confidence 35788999999999854 677777799999999753 2 233334456899999998 468999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
++++++.+.+|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999985
No 27
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.8e-29 Score=203.91 Aligned_cols=290 Identities=11% Similarity=0.076 Sum_probs=215.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|..+.|++|+|+| +...+++.||||++ +|+|++.......+.....|+++|.+++|+ ++..+++|+.|+.+
T Consensus 25 pP~DsIS~l~FSP---~~~~~~~A~SWD~t-----VR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 25 PPEDSISALAFSP---QADNLLAAGSWDGT-----VRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CcccchheeEecc---ccCceEEecccCCc-----eEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 6778999999999 56677889999986 679999775556667778899999999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
++||+..++...+. .|.++|..+.|. -..|++||.|.+|+.||+++.. +...+.-++. ++++... ...
T Consensus 97 k~wDL~S~Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeR--vYa~Dv~-~pm 168 (347)
T KOG0647|consen 97 KLWDLASGQVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPER--VYAADVL-YPM 168 (347)
T ss_pred EEEEccCCCeeeee----ecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeeccce--eeehhcc-Cce
Confidence 99999977765554 699999999998 3468999999999999999875 4545455554 7776543 457
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ceeeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQSIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~~~~~~ 248 (343)
++.+..++.|.+|+|+. +..........- + -.+.||+.+++.... +.|+-+|++.+-.+..+ .....+.
T Consensus 169 ~vVata~r~i~vynL~n--~~te~k~~~SpL--k----~Q~R~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLEN--PPTEFKRIESPL--K----WQTRCVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred eEEEecCCcEEEEEcCC--CcchhhhhcCcc--c----ceeeEEEEEecCCce-EeeeecceEEEEecCCCCccCceeEE
Confidence 88888999999999977 222222222211 1 558999999987654 78999999999988654 2222222
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
. |+....+ ...--+|++|+|||... .|++++.||++-.||.+.. ..+....+.||....|+. +|+
T Consensus 240 C-HR~~~~~-~~~VYaVNsi~FhP~hg----------tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ 306 (347)
T KOG0647|consen 240 C-HRSTNSV-NDDVYAVNSIAFHPVHG----------TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGS 306 (347)
T ss_pred E-eccCCCC-CCceEEecceEeecccc----------eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCC
Confidence 1 0000000 01123689999999877 6999999999999998644 334344578999999997 677
Q ss_pred eeEE--ccCCceEEEEeCC
Q 019258 327 DVIC--SLEWESIAIVSRP 343 (343)
Q Consensus 327 ~l~~--~~~~~~i~~~~~~ 343 (343)
+.+. |+||.+-|.+++|
T Consensus 307 ifaYA~gYDWSkGhe~~n~ 325 (347)
T KOG0647|consen 307 IFAYALGYDWSKGHEGNNP 325 (347)
T ss_pred EEEEEeecccccccccCCC
Confidence 7764 5577666665443
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=226.55 Aligned_cols=278 Identities=18% Similarity=0.186 Sum_probs=217.8
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
...|.++.++| +++.+++++.|+. +++|+...... .+... .+|...|++++|+ ++.++++++.|++|+
T Consensus 159 ~~sv~~~~fs~----~g~~l~~~~~~~~-----i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 159 CPSVTCVDFSP----DGRALAAASSDGL-----IRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred cCceEEEEEcC----CCCeEEEccCCCc-----EEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 57899999999 8999999999965 56888843221 12222 5788899999999 888999999999999
Q ss_pred EEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 96 VLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 96 v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
|||+. ....+... .+|...|++++|+ ++.+++|+.|++|++||++++ .+.+.+..|.. .|++++|.+ .+.+
T Consensus 229 iwd~~~~~~~~~~l---~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~-~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL---KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSD-GISGLAFSPDGNLL 303 (456)
T ss_pred EeeccCCCeEEEEe---cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCC-ceEEEEECCCCCEE
Confidence 99994 32333333 3799999999999 889999999999999999998 47777788877 899999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCC--CeeEEecccCCCCCccc-CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 172 VTGGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASG-MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
++++.|+.|++||+.. +. ++..+..+.. . +++++.|+|++.++ ++++.|+.+++||++....+..+.
T Consensus 304 ~s~s~d~~i~vwd~~~---~~~~~~~~~~~~~~------~~~~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLET---GSKLCLKLLSGAEN------SAPVTSVQFSPNGKYL-LSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEcCCCccEEEEECCC---CceeeeecccCCCC------CCceeEEEECCCCcEE-EEecCCCeEEEEEccCCcceeeec
Confidence 9999999999999998 55 3445554442 3 69999999998765 689999999999999876666654
Q ss_pred cCCCCcccccCCccc---cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-cccccc-ccccceeeecC
Q 019258 249 GVGTGEAVTHSLSES---EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAE-PCAINSFDIDP 322 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~---~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~-~~~i~s~~~~~ 322 (343)
.|.. .+....+.+.+. .+++++.|+.|++|+.... . ..+..+ ..++..+++++
T Consensus 374 -----------~~~~~~~~~~~~~~~~~~~----------~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 374 -----------GHSNLVRCIFSPTLSTGGK----------LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred -----------ccCCcceeEecccccCCCC----------eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC
Confidence 3444 344444455555 7999999999999998633 2 233334 46788999998
Q ss_pred CCCCeeEEcc--CCceEEEEeC
Q 019258 323 QNPSDVICSL--EWESIAIVSR 342 (343)
Q Consensus 323 ~~~~~l~~~~--~~~~i~~~~~ 342 (343)
...+++.++ .|+.+.+|+.
T Consensus 433 -~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 433 -TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -CcCeeeecCcCCCceEEEecC
Confidence 446667666 5789999975
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=212.09 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=197.1
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.|.+-|.|+++- .+..|++|+.|++++|||+..++..... .+|...|..+.++ -.++++++.|+.|+-||++.+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl---tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL---TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee---cchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 578889999998 7789999999999999999976544333 4799999999999 889999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+ +.+.+.+|-+ .|+|++.+| -..++||+.|.++++||+|+ ..++..+.+|. .+|.++.+.|..+.+
T Consensus 226 k-vIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRt---r~~V~~l~GH~-------~~V~~V~~~~~dpqv- 292 (460)
T KOG0285|consen 226 K-VIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRT---RASVHVLSGHT-------NPVASVMCQPTDPQV- 292 (460)
T ss_pred h-hHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecc---cceEEEecCCC-------CcceeEEeecCCCce-
Confidence 4 7777777776 899999999 88999999999999999999 78888899887 889999999987765
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++|+.|++|++||++.+.....+. .|...|.+++.||... .++|+|.|. |+-|+..+.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt-----------~hkksvral~lhP~e~----------~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLT-----------HHKKSVRALCLHPKEN----------LFASASPDN-IKQWKLPEG 350 (460)
T ss_pred EEecCCceEEEeeeccCceeEeee-----------cccceeeEEecCCchh----------hhhccCCcc-ceeccCCcc
Confidence 699999999999999977665554 6889999999999876 577777764 677887654
Q ss_pred c--ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 305 P--FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 305 ~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. ..+-.+...||++.++.+ .++++|+|++.|.+|+
T Consensus 351 ~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWD 387 (460)
T ss_pred chhhccccccceeeeeeeccC--ceEEEcCCceEEEEEe
Confidence 3 222233467899999974 7999999999999986
No 30
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=214.93 Aligned_cols=275 Identities=9% Similarity=0.085 Sum_probs=219.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
..|-+-|++++=+| ..-..+++||.|+. +++|++...... ...-.|.|.|..+++.. ..+++++.|.+|
T Consensus 63 ~gHrdGV~~lakhp---~~ls~~aSGs~DG~-----VkiWnlsqR~~~--~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHP---NKLSTVASGSCDGE-----VKIWNLSQRECI--RTFKAHEGLVRGICVTQ-TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCc---chhhhhhccccCce-----EEEEehhhhhhh--heeecccCceeeEEecc-cceEEecCCcce
Confidence 46778899999999 33478999999987 669999653222 23346889999999985 778899999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
+.|.+... ++... .....+..++.+ +..|+|||.+ |-+||..... +.+.+..... .|.+++|+| ...
T Consensus 132 K~wk~~~~-p~~ti----lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~D-ti~svkfNpvETsI 202 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTI----LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGAD-SISSVKFNPVETSI 202 (433)
T ss_pred eeeeccCC-cceee----eccccccccccccccccccccCce--eeecccccCC-ccceeecCCC-ceeEEecCCCcchh
Confidence 99998742 22111 133466777776 7889999876 9999997764 5555444433 699999999 677
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|++++.|+.|.+||+|+ ..|+..+... ...+.|+|+| ....|++|++|..++.||+|....|....
T Consensus 203 Las~~sDrsIvLyD~R~---~~Pl~KVi~~--------mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~-- 268 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQ---ASPLKKVILT--------MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH-- 268 (433)
T ss_pred eeeeccCCceEEEeccc---CCccceeeee--------ccccceecCc-cccceeeccccccceehhhhhhcccchhh--
Confidence 88888999999999999 7888775422 4578999999 55678999999999999999998888876
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccc--cccceeeecCCCCCe
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEP--CAINSFDIDPQNPSD 327 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~--~~i~s~~~~~~~~~~ 327 (343)
..|...|.+|.|+|.+. .+++||.|.+|+++..... ..+++... ..|.++.++- +.+|
T Consensus 269 --------~dhvsAV~dVdfsptG~----------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dsky 329 (433)
T KOG0268|consen 269 --------KDHVSAVMDVDFSPTGQ----------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKY 329 (433)
T ss_pred --------cccceeEEEeccCCCcc----------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccE
Confidence 88999999999999998 6999999999999987643 45666553 6789999997 4599
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
++||+|++.|++|+-
T Consensus 330 i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKA 344 (433)
T ss_pred EEecCCCcceeeeec
Confidence 999999999999973
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.2e-29 Score=210.56 Aligned_cols=250 Identities=18% Similarity=0.209 Sum_probs=195.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL--TPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|...|.+++|.-..+ ....|+++|.|++ |++|..+..+.. ....-.+|...|-++.-. ++.++++|+.|.
T Consensus 142 Ght~~ik~v~~v~~n~-~~~~fvsas~Dqt-----l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNS-SSCLFVSASMDQT-----LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred cCCcceeeeEEEecCC-ccceEEEecCCce-----EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 6888999999988421 2247999999965 445555322211 112223899999999987 899999999999
Q ss_pred cEEEEEccCc-----eee-----------------eeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 93 SLHVLSSAMQ-----VLL-----------------SVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 93 ~v~v~~~~~~-----~~~-----------------~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
++.+|+.... +.. .......+|.++|.++.|. ...+.++|.|.+|+.||+.++....
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccccee
Confidence 9999994211 000 1111234699999999999 8899999999999999999986444
Q ss_pred EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 150 RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+ .+.. .+.++++++ .+++++|+.|..|++||.|.++..-...++.+|. .+|.++.|+|...++|++|+
T Consensus 296 ~~-~~~k--sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~-------nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 296 TL-TTNK--SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK-------NWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ee-ecCc--ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch-------hhhhheecCCCCceEEEEEe
Confidence 44 3444 599999999 8999999999999999999933222334577765 89999999999999999999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.|+++++||+|....|+..+ .+|...|.++.|+... .+++|+.|.+|++.+..
T Consensus 366 ~D~t~klWDvRS~k~plydI----------~~h~DKvl~vdW~~~~-----------~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDI----------AGHNDKVLSVDWNEGG-----------LIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCCCcceee----------ccCCceEEEEeccCCc-----------eEEeccCcceEEEeccc
Confidence 99999999999977787777 7899999999999542 68999999999998753
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6e-29 Score=224.55 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=226.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEE-ccCCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLS-TSHQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~-~~~~~~l~~~s~dg~v~ 95 (343)
-.+.|..|++.- ++.++++.++.-+ +|+++++++ ..|.-..+|...|.++. |+.+.+|++++.|.+++
T Consensus 322 ~ndEI~Dm~~lG---~e~~~laVATNs~-----~lr~y~~~~---~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 322 YNDEILDMKFLG---PEESHLAVATNSP-----ELRLYTLPT---SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred CchhheeeeecC---CccceEEEEeCCC-----ceEEEecCC---CceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 346789998887 5778888887543 488998855 55555668999999999 55778999999999999
Q ss_pred EEEccCcee-eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc--e-EEE-----EEcCCCccceEEE
Q 019258 96 VLSSAMQVL-LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG--E-FKR-----VYDGNGLVGFNCV 163 (343)
Q Consensus 96 v~~~~~~~~-~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~--~-~~~-----~~~~~~~~~v~~~ 163 (343)
+|+++++.. ........+|.+.|.++..+ ...|+++|.|+++++|++...+ . +.. ....|+. .|.|+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-dIN~V 469 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-DINCV 469 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-cccce
Confidence 999964332 22333445799999999998 6789999999999999997621 1 111 2234555 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+++| ..+++||+.|++.+||++.+ ......+.+|. ..+.||.|+|.. .+++++|.|++|+||.+.+..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~---~~l~~vLsGH~-------RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQ---LRLLGVLSGHT-------RGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred EecCCCceEEecccccceeeecccC---ceEEEEeeCCc-------cceEEEEecccc-ceeEeccCCceEEEEEeccce
Confidence 9999 88899999999999999987 67777788887 669999999986 578999999999999999877
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~ 320 (343)
+...+ .+|...|..+.|-.++. +|+||+.||.|++|+-. .-...+-.+...|.++..
T Consensus 539 ClkT~-----------eGH~~aVlra~F~~~~~----------qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 539 CLKTF-----------EGHTSAVLRASFIRNGK----------QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred eeeee-----------cCccceeEeeeeeeCCc----------EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 66555 57999999999998877 89999999999999865 334555566688999999
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++ +...+++|+.|+.|-+|+
T Consensus 598 ~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 598 SP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cC-ccceeEecCCCeEEEEee
Confidence 98 457889999999999996
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3e-28 Score=194.29 Aligned_cols=247 Identities=13% Similarity=0.139 Sum_probs=193.0
Q ss_pred ccCCccc-ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEc
Q 019258 13 HRFPQSK-YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 13 ~~~~~~~-~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
..++|.+ .|+.+...| +.+.||++++- .++++|+...... ++.+ -.|...|+++.|. +++.+++|+
T Consensus 34 rTiqh~dsqVNrLeiTp----dk~~LAaa~~q------hvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITP----DKKDLAAAGNQ------HVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred EEEecCccceeeEEEcC----CcchhhhccCC------eeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecC
Confidence 3445544 688888888 88899988765 4889999664433 3444 4567899999999 999999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.||+++|||++. +...+. ..|..+|+++..+ ...|++|..+|.|++||+.+........ +.....+.++...|
T Consensus 103 eDgt~kIWdlR~---~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 103 EDGTVKIWDLRS---LSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMP 177 (311)
T ss_pred CCceEEEEeccC---cccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcC
Confidence 999999999984 222222 2578999999998 7789999999999999998874333333 33334799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCC---CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGS---GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+..++++...|...+|++-.... -.|+.+++.|. +.+..+.++|++.+ +++++.|.+++||+.... .
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-------~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~ 248 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-------GHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F 248 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-------ceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e
Confidence 88888889999999999865211 23445566555 77999999999864 689999999999998875 2
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
...+. .++|+..+|+.+|+.++. +|+++|.|+..++|+...
T Consensus 249 kle~~---------l~gh~rWvWdc~FS~dg~----------YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 249 KLELV---------LTGHQRWVWDCAFSADGE----------YLVTASSDHTARLWDLSA 289 (311)
T ss_pred eeEEE---------eecCCceEEeeeeccCcc----------EEEecCCCCceeeccccc
Confidence 22222 167999999999999988 899999999999999754
No 34
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=213.43 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=212.1
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
....|+.++++| .++.-+|+++.- ++.|++.......+. ...+...|.++.|. ++.+|++|...|.|+
T Consensus 25 e~~~vssl~fsp---~~P~d~aVt~S~------rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~sG~V~ 93 (487)
T KOG0310|consen 25 EHNSVSSLCFSP---KHPYDFAVTSSV------RVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDESGHVK 93 (487)
T ss_pred ccCcceeEecCC---CCCCceEEeccc------EEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCCcCcEE
Confidence 345799999999 566555554432 377888854333222 33456789999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
|||... ..+.+...+|+.+|..+.|+ +..+++|++|+.+++||+.+.. +...+.+|.. .|.|.+|+| ...
T Consensus 94 vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htD-YVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 94 VFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTD-YVRCGDISPANDHI 168 (487)
T ss_pred Eecccc---HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcc-eeEeeccccCCCeE
Confidence 999552 22334445799999999998 7788999999999999999984 4445566766 899999999 568
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
++|||+||+|++||+|. ....+.++. |. .+|..+.+-|.|.. +++++. ..|++||+-++.+....+
T Consensus 169 vvtGsYDg~vrl~DtR~--~~~~v~eln-hg-------~pVe~vl~lpsgs~-iasAgG-n~vkVWDl~~G~qll~~~-- 234 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRS--LTSRVVELN-HG-------CPVESVLALPSGSL-IASAGG-NSVKVWDLTTGGQLLTSM-- 234 (487)
T ss_pred EEecCCCceEEEEEecc--CCceeEEec-CC-------CceeeEEEcCCCCE-EEEcCC-CeEEEEEecCCceehhhh--
Confidence 99999999999999999 334444443 32 78999999998764 455443 489999998777666655
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
..|...|+++.+..++. .|+|+|-||.+++++.. .+..--+.-+.||.+++++|+ ++.++
T Consensus 235 --------~~H~KtVTcL~l~s~~~----------rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d-d~t~v 295 (487)
T KOG0310|consen 235 --------FNHNKTVTCLRLASDST----------RLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD-DQTVV 295 (487)
T ss_pred --------hcccceEEEEEeecCCc----------eEeecccccceEEEEccceEEEEeeecccceeeEEecCC-CceEE
Confidence 45899999999998776 79999999999999953 333333444899999999994 59999
Q ss_pred EccCCceEEEE
Q 019258 330 CSLEWESIAIV 340 (343)
Q Consensus 330 ~~~~~~~i~~~ 340 (343)
.|..+|-+.+-
T Consensus 296 iGmsnGlv~~r 306 (487)
T KOG0310|consen 296 IGMSNGLVSIR 306 (487)
T ss_pred Eecccceeeee
Confidence 99999876543
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.3e-28 Score=217.99 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=220.0
Q ss_pred cccCCcc-cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 12 VHRFPQS-KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 12 ~~~~~~~-~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+|...-+ .+|..+.|+. .+++++.|+.- .+ .|-+|+...+.. .+++..|-..+++++++ ++.++++|+
T Consensus 300 ih~LSis~~~I~t~~~N~----tGDWiA~g~~k--lg--QLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNS----TGDWIAFGCSK--LG--QLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEeecccceeeEEEecc----cCCEEEEcCCc--cc--eEEEEEeeccce--eeeccccccceeeEEECCCCcEEEecc
Confidence 4444434 5788888888 78999998743 23 355666644332 36667889999999999 999999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.||+|+||+...+-.+... ..|+..|+.++|. ++.+++.|-||+|+.||+.+.+. .+.+..+......|++-.|
T Consensus 370 eDgKVKvWn~~SgfC~vTF---teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~ 445 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTF---TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDP 445 (893)
T ss_pred CCCcEEEEeccCceEEEEe---ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcC
Confidence 9999999999854444332 3599999999999 99999999999999999999854 4444445444788999999
Q ss_pred -CCEEEEEeCCC-cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 168 -PTEFVTGGFGY-GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 168 -~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
+..+++|+.|. .|.+|++.+ ++.+-.+.+|+ +||.+++|+|.+. .+++|+.|.+|++||+-......
T Consensus 446 sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHE-------gPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHE-------GPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred CCCEEEeeccceEEEEEEEeec---CeeeehhcCCC-------CcceeeEEccccC-eEEeccccceEEEEEeeccCcee
Confidence 55555555544 599999999 88887888887 9999999999986 67999999999999986542222
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc-----------------c
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE-----------------L 308 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~-----------------~ 308 (343)
..+ .+...+.+++|.|++. .++.+..||.|.+||..+.... .
T Consensus 515 Etl-----------~i~sdvl~vsfrPdG~----------elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 515 ETL-----------EIRSDVLAVSFRPDGK----------ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred eeE-----------eeccceeEEEEcCCCC----------eEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 222 2567899999999998 7999999999999996543211 0
Q ss_pred c-cc----ccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 309 L-AE----PCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 309 ~-~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
. .+ ..++.++..++ +|..+++|+....|.++.-|
T Consensus 574 ~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred eehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence 0 01 26799999999 67999999999999988643
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=3.2e-29 Score=228.14 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=199.1
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce--------ee--------------------eeeccCCccccCeEEE
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV--------LL--------------------SVDENSGFHVGPISGV 121 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~--------~~--------------------~~~~~~~~h~~~v~~~ 121 (343)
...++|..|+ +..+||.|-.|..|++|.+.... .+ ...+...+|.+||.+.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3568999999 77788999999999999886210 00 1122245799999999
Q ss_pred Eec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 122 DLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 122 ~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.|+ .+.|++||.|+++++|.+++.. ..-.+.+|.. +|.++.|+| +.+|+|++.|++-++|.... ..|++.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwdV~F~P~GyYFatas~D~tArLWs~d~---~~PlRifa 532 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWDVQFAPRGYYFATASHDQTARLWSTDH---NKPLRIFA 532 (707)
T ss_pred eecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceeeEEecCCceEEEecCCCceeeeeeccc---CCchhhhc
Confidence 999 7889999999999999999984 6666777777 999999999 99999999999999999987 77877787
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
+|- +-|.|+.|||+. +++++|+.|.+|++||..++... .+. .+|.++|.+|+|+|.+.
T Consensus 533 ghl-------sDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V-RiF----------~GH~~~V~al~~Sp~Gr--- 590 (707)
T KOG0263|consen 533 GHL-------SDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV-RIF----------TGHKGPVTALAFSPCGR--- 590 (707)
T ss_pred ccc-------cccceEEECCcc-cccccCCCCceEEEEEcCCCcEE-EEe----------cCCCCceEEEEEcCCCc---
Confidence 776 779999999986 46799999999999999986554 444 57999999999999988
Q ss_pred CCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|++|++||.|.+||.... ..++..+...|+|+.|+. +|..|++|+-|..+.+|+.
T Consensus 591 -------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 591 -------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 7999999999999998643 345555667899999998 6799999999999999963
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=197.40 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=194.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|.+|+|+| .+++|++||+|.+ .-||.-.+.+ .++...+ +|+.+|-+++|+ ++++||+++.|..
T Consensus 59 ~hkrsVRsvAwsp----~g~~La~aSFD~t-----~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 59 GHKRSVRSVAWSP----HGRYLASASFDAT-----VVIWKKEDGE-FECVATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred cchheeeeeeecC----CCcEEEEeeccce-----EEEeecCCCc-eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 3778999999999 8999999999976 4488875433 4554444 689999999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC-C-CceEEEEEcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI-G-GGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~-~-~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
|=||.+....++........|...|..+.|+ ...|+|+|.|.+|++|+-. . .-.+...+..|.. .|.+++|++ +
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G 207 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIG 207 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCC
Confidence 9999998777777777667899999999999 6899999999999999876 2 2345666777776 899999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC-ceeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-QQSIVL 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-~~~~~~ 247 (343)
.++++++.|++++||-++. . +... +..++..+.|. + .++++++.|+.|++|--... ..|.-.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~---~-----~~~~------~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~ 270 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYT---D-----LSGM------HSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWN 270 (312)
T ss_pred ceEEEecCCcceEeeeecc---C-----cchh------cccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHH
Confidence 8999999999999998765 1 1111 12679999998 4 36899999999999965431 222111
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+.. -....|+..|++|+|+|.... .|++||+||.|++|+.
T Consensus 271 l~~-----~~~~aHe~dVNsV~w~p~~~~---------~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 271 LLA-----KKEGAHEVDVNSVQWNPKVSN---------RLASGGDDGIVNFWEL 310 (312)
T ss_pred HHH-----hhhcccccccceEEEcCCCCC---------ceeecCCCceEEEEEe
Confidence 100 012579999999999996555 8999999999999975
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6.6e-28 Score=201.78 Aligned_cols=288 Identities=17% Similarity=0.151 Sum_probs=220.4
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+....|...|.++.-+| +.++++||+.|... -+|+....+. +....+|...|+++.|+ ++.+|++|..
T Consensus 58 ~tF~~H~~svFavsl~P----~~~l~aTGGgDD~A-----flW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP----NNNLVATGGGDDLA-----FLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eehhhcCCceEEEEeCC----CCceEEecCCCceE-----EEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCC
Confidence 34457999999999999 89999999999653 4999976553 24445799999999999 9999999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
+|.|+||+..++....... .-...+.=+.|+ +..|+.|+.||.+-+|.+.++ ...+++.+|.. ++++=+|.|
T Consensus 127 sG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~-~ct~G~f~pd 201 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNS-PCTCGEFIPD 201 (399)
T ss_pred CccEEEEEcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCC-CcccccccCC
Confidence 9999999998554332221 122355566666 889999999999999999987 36667777776 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc---------------------------------------
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS--------------------------------------- 208 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 208 (343)
+.+++++..||+|++|++.+ ++|+..+....+ ...+.
T Consensus 202 GKr~~tgy~dgti~~Wn~kt---g~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKT---GQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred CceEEEEecCceEEEEecCC---CceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99999999999999999999 777776652221 00000
Q ss_pred ------cCeEEEEEcCCC--CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 209 ------GMIHSVDIHPSR--KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 209 ------~~i~~v~~~p~~--~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
..+.||.+.|.. -.++|+|+-||+|.|||+......... .|+.+|..+.|.+ ..
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------------~he~~V~~l~w~~-t~----- 339 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC------------EHEDGVTKLKWLN-TD----- 339 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec------------cCCCceEEEEEcC-cc-----
Confidence 112222222221 136788999999999999874433332 4899999999998 45
Q ss_pred CCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+|++++.+|.|+.||.... ..++..+..+|..|.++| +++.|++++++....||.-|
T Consensus 340 -----~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 -----YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----hheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 7999999999999998643 344445567999999999 56999999999999998754
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.1e-30 Score=213.28 Aligned_cols=264 Identities=15% Similarity=0.160 Sum_probs=210.6
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
+.|.++.+ +.+.+++|+.|++ +++||..+ ..++ ...+|.|.|.|+.|. ...+++|++|.+|++|
T Consensus 198 kgVYClQY------DD~kiVSGlrDnT-----ikiWD~n~---~~c~~~L~GHtGSVLCLqyd-~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 198 KGVYCLQY------DDEKIVSGLRDNT-----IKIWDKNS---LECLKILTGHTGSVLCLQYD-ERVIVSGSSDSTVRVW 262 (499)
T ss_pred CceEEEEe------cchhhhcccccCc-----eEEecccc---HHHHHhhhcCCCcEEeeecc-ceEEEecCCCceEEEE
Confidence 44566554 4466899999976 66999954 3333 335899999999998 5699999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
|+++++++... -.|...|..+.|+.+++++++.|.++.+||+.... .+++++.+|.. .|..+.|.. .++++++
T Consensus 263 Dv~tge~l~tl---ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-aVNvVdfd~-kyIVsAS 337 (499)
T KOG0281|consen 263 DVNTGEPLNTL---IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFDD-KYIVSAS 337 (499)
T ss_pred eccCCchhhHH---hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-heeeecccc-ceEEEec
Confidence 99987766544 25889999999999999999999999999997643 34455667766 799999875 4899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|.+|++|+..+ .+.+.++.+|. ..|.|+.+.. .++++|++|.+|++||+..+..... +
T Consensus 338 gDRTikvW~~st---~efvRtl~gHk-------RGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRv-L------- 396 (499)
T KOG0281|consen 338 GDRTIKVWSTST---CEFVRTLNGHK-------RGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRV-L------- 396 (499)
T ss_pred CCceEEEEeccc---eeeehhhhccc-------ccceehhccC---eEEEecCCCceEEEEeccccHHHHH-H-------
Confidence 999999999999 88888888776 5588887753 5788999999999999998655433 3
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc-----------ccccccccceeeecCCC
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE-----------LLAEPCAINSFDIDPQN 324 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~-----------~~~~~~~i~s~~~~~~~ 324 (343)
++|+.-|.++.|+. . .+++|+.||+|++|+....... +..+...|-.+.|+.
T Consensus 397 ---eGHEeLvRciRFd~--k----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-- 459 (499)
T KOG0281|consen 397 ---EGHEELVRCIRFDN--K----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-- 459 (499)
T ss_pred ---hchHHhhhheeecC--c----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--
Confidence 68999999999983 2 6899999999999997533221 112235788888886
Q ss_pred CCeeEEccCCceEEEEe
Q 019258 325 PSDVICSLEWESIAIVS 341 (343)
Q Consensus 325 ~~~l~~~~~~~~i~~~~ 341 (343)
..+++.+.+..|-||+
T Consensus 460 -fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 460 -FQIISSSHDDTILIWD 475 (499)
T ss_pred -eEEEeccCCCeEEEEE
Confidence 7888888999999996
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.7e-28 Score=197.98 Aligned_cols=235 Identities=16% Similarity=0.168 Sum_probs=187.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
..|+++|+.++|+ ++..|++|+.|..|.+|++. +.+..... ++|++.|..+.|. +..++++|.|.+|+.||.+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 5689999999999 99999999999999999976 33333333 3799999999999 9999999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
+++..++ ...|.. -+..+.-.. ...+.+++.|+++++||.|+ .++++++... .+++++.|...+.
T Consensus 121 tG~~~rk-~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~---k~~~~t~~~k--------yqltAv~f~d~s~ 187 (338)
T KOG0265|consen 121 TGKRIRK-HKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK---KEAIKTFENK--------YQLTAVGFKDTSD 187 (338)
T ss_pred cceeeeh-hccccc-eeeecCccccCCeEEEecCCCceEEEEeecc---cchhhccccc--------eeEEEEEeccccc
Confidence 9964444 455655 577776433 55677888899999999999 6777776422 6699999998876
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+ .+|+-|+.|++||+|+......+ .+|...|..|..+|++. ++.+-+.|.++++|+.
T Consensus 188 qv-~sggIdn~ikvWd~r~~d~~~~l-----------sGh~DtIt~lsls~~gs----------~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 188 QV-ISGGIDNDIKVWDLRKNDGLYTL-----------SGHADTITGLSLSRYGS----------FLLSNSMDNTVRVWDV 245 (338)
T ss_pred ce-eeccccCceeeeccccCcceEEe-----------ecccCceeeEEeccCCC----------ccccccccceEEEEEe
Confidence 65 68999999999999986554443 57999999999999988 7999999999999985
Q ss_pred CCC-c----cccc-cc----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 302 GEE-P----FELL-AE----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 302 ~~~-~----~~~~-~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..- + ..+. .+ ........|+| ++.++.+|+.|..+|+|+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 321 1 1111 11 13456678899 679999999999999996
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=221.62 Aligned_cols=242 Identities=12% Similarity=0.174 Sum_probs=202.3
Q ss_pred CcccceeeEE-ecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCC-ccCCCCCCeeEEEcc--CCCeEEEEcC
Q 019258 16 PQSKYIDAVR-WLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPH-SQWTPPTRISSLSTS--HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~-w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~-~~~~~~~~v~~v~~~--~~~~l~~~s~ 90 (343)
.|.+.|-++. |+. +.+|+|||.|+. +++|.+.++.. ..++ ...+|.+.|.+++++ ....|+++|.
T Consensus 363 GH~e~vlSL~~~~~-----g~llat~sKD~s-----vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSS-----GDLLATGSKDKS-----VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred Cchhheeeeeeccc-----CcEEEEecCCce-----EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 5788888888 544 689999999975 67999844322 2222 235789999999999 7789999999
Q ss_pred CCcEEEEEccCcee----eee--eccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE
Q 019258 91 SGSLHVLSSAMQVL----LSV--DENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 91 dg~v~v~~~~~~~~----~~~--~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 162 (343)
|+++++|++...++ +.+ ......|...|++++++ .+.+++||.|.+.++|++++. ....++.+|.. ++.|
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~R-Gvw~ 510 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTR-GVWC 510 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCcc-ceEE
Confidence 99999999984211 111 12345699999999998 788999999999999999977 57888888888 8999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|++ .+.++|++.|++|+||.+.. ..++.+|.+|. ..|..+.|-.++.. +++++.||-|++|++++.
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~---fSClkT~eGH~-------~aVlra~F~~~~~q-liS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSIST---FSCLKTFEGHT-------SAVLRASFIRNGKQ-LISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEeccccceeEeccCCceEEEEEecc---ceeeeeecCcc-------ceeEeeeeeeCCcE-EEeccCCCcEEEEeccch
Confidence 99999 88999999999999999999 89999999887 78999999988875 468999999999999997
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++...+ ..|++.||+++-+|... .+++|+.||.|.+|+-
T Consensus 580 eC~~tl-----------D~H~DrvWaL~~~~~~~----------~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 580 ECEMTL-----------DAHNDRVWALSVSPLLD----------MFVTGGGDGRIIFWKD 618 (775)
T ss_pred hhhhhh-----------hhccceeEEEeecCccc----------eeEecCCCeEEEEeec
Confidence 766554 57999999999999877 7999999999999974
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.7e-27 Score=214.38 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=222.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc-CCCeEEEEcCC-CcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS-HQSLVAASTLS-GSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l~~~s~d-g~v~ 95 (343)
.+|.+.+++| ..+.||+|-..+. ..++.+++ ..++..+... .+|..+.|+ .++.|+.|+.. |.+-
T Consensus 266 ~kvtaa~fH~----~t~~lvvgFssG~-----f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 266 SKVTAAAFHK----GTNLLVVGFSSGE-----FGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred cceeeeeccC----CceEEEEEecCCe-----eEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 6788888888 6788888866554 44888866 3344444443 689999999 89999999874 8999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||+.+...-+.- ..+|...+++++++ |+.+++|+.||.|++||..++- +..++..|.+ .|+.++|+. ++.++
T Consensus 334 VweWqsEsYVlK---QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts-~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 334 VWEWQSESYVLK---QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTS-GVTAVQFTARGNVLL 408 (893)
T ss_pred EEEeeccceeee---ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCC-ceEEEEEEecCCEEE
Confidence 999985433322 23699999999999 8899999999999999999984 6666666776 899999999 89999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-cEEEEEccCCceeeeeecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-TVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-~v~iwd~~~~~~~~~~~~~~ 251 (343)
+.+.||+|+.||+.. ....++|..... ....|++.+|.|. ++.+|+.|. .|++|++.++ +.+..+
T Consensus 409 ssSLDGtVRAwDlkR---YrNfRTft~P~p------~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTG-qllDiL--- 474 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKR---YRNFRTFTSPEP------IQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTG-QLLDIL--- 474 (893)
T ss_pred EeecCCeEEeeeecc---cceeeeecCCCc------eeeeEEEEcCCCC-EEEeeccceEEEEEEEeecC-eeeehh---
Confidence 999999999999988 777777776553 5588999999986 555677766 4999999985 445555
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.+|+++|.++.|+|++. .|+|+|.|.+|++|+--.. ..|.+....-+.++.+.| +|..|+
T Consensus 475 -------sGHEgPVs~l~f~~~~~----------~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~ela 536 (893)
T KOG0291|consen 475 -------SGHEGPVSGLSFSPDGS----------LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELA 536 (893)
T ss_pred -------cCCCCcceeeEEccccC----------eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEE
Confidence 78999999999999988 7999999999999996433 455566667899999999 679999
Q ss_pred EccCCceEEEEeC
Q 019258 330 CSLEWESIAIVSR 342 (343)
Q Consensus 330 ~~~~~~~i~~~~~ 342 (343)
.++-+|-|.+|+.
T Consensus 537 VaTldgqItf~d~ 549 (893)
T KOG0291|consen 537 VATLDGQITFFDI 549 (893)
T ss_pred EEEecceEEEEEh
Confidence 9999999999973
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.7e-29 Score=209.01 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=197.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|+..|-++.+.. +.+++||.|.+ +++||+...+.. ...+.|...|..+.|+ ++++++++.|.++.
T Consensus 235 GHtGSVLCLqyd~------rviisGSSDsT-----vrvWDv~tge~l--~tlihHceaVLhlrf~-ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 235 GHTGSVLCLQYDE------RVIVSGSSDST-----VRVWDVNTGEPL--NTLIHHCEAVLHLRFS-NGYMVTCSKDRSIA 300 (499)
T ss_pred cCCCcEEeeeccc------eEEEecCCCce-----EEEEeccCCchh--hHHhhhcceeEEEEEe-CCEEEEecCCceeE
Confidence 4666677776654 58999999965 779999664332 3345778899999998 78899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
+||+.....+.+.+...+|.+.|+.++|+.+++++++.|.++++|++.+. ...+++.+|.. +|-|+.|. +..+++|+
T Consensus 301 VWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~-efvRtl~gHkR-GIAClQYr-~rlvVSGS 377 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKR-GIACLQYR-DRLVVSGS 377 (499)
T ss_pred EEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccce-eeehhhhcccc-cceehhcc-CeEEEecC
Confidence 99998665666666667899999999999999999999999999999998 57777788876 78888765 57899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|.+|++||... +.++..+++|+ .-|.|+.|+.. -+++|+.||+|++||+.....|.....- ...
T Consensus 378 SDntIRlwdi~~---G~cLRvLeGHE-------eLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~--~Cl 442 (499)
T KOG0281|consen 378 SDNTIRLWDIEC---GACLRVLEGHE-------ELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPAST--LCL 442 (499)
T ss_pred CCceEEEEeccc---cHHHHHHhchH-------HhhhheeecCc---eeeeccccceEEEEecccccCCcccccc--hHH
Confidence 999999999999 88888888887 78999999864 3689999999999999876655322110 000
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
-....|.+.|..++|.. . ++++++.|.+|.+|+-...+
T Consensus 443 ~~lv~hsgRVFrLQFD~---f---------qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQFDE---F---------QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred HhhhhccceeEEEeecc---e---------EEEeccCCCeEEEEEcCCCC
Confidence 01145888999999973 3 79999999999999975443
No 44
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.9e-27 Score=193.32 Aligned_cols=277 Identities=13% Similarity=0.097 Sum_probs=204.1
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|+.+.|++|+|+| ....|+.+|||+. |++++++.. .+...+.|.+++.+++|.+....++|+.||.|
T Consensus 10 npP~d~IS~v~f~~----~~~~LLvssWDgs-----lrlYdv~~~---~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP----SSSDLLVSSWDGS-----LRLYDVPAN---SLKLKFKHGAPLLDCAFADESTIVTGGLDGQV 77 (323)
T ss_pred CCChhceeeEEEcC----cCCcEEEEeccCc-----EEEEeccch---hhhhheecCCceeeeeccCCceEEEeccCceE
Confidence 35678999999998 5556667779975 889999663 45667889999999999988899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
+++|+...+...+. .|..+|.++... .+.+++||.|++|++||.++. .....++... .|.++... ++.|+
T Consensus 78 r~~Dln~~~~~~ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~~k--kVy~~~v~-g~~Lv 149 (323)
T KOG1036|consen 78 RRYDLNTGNEDQIG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQGK--KVYCMDVS-GNRLV 149 (323)
T ss_pred EEEEecCCcceeec----cCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccccCc--eEEEEecc-CCEEE
Confidence 99999966555443 599999999999 889999999999999999975 3444444444 58888754 56788
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc----eeeeee
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ----QSIVLS 248 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~----~~~~~~ 248 (343)
.|+.|..+.+||+|. .....+..... -+ .++.||++.|++... ++++-||+|.+=.+...+ ....+.
T Consensus 150 Vg~~~r~v~iyDLRn---~~~~~q~reS~-lk----yqtR~v~~~pn~eGy-~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRN---LDEPFQRRESS-LK----YQTRCVALVPNGEGY-VVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred EeecCceEEEEEccc---ccchhhhcccc-ce----eEEEEEEEecCCCce-EEEeecceEEEEccCCchHHhhhceeEE
Confidence 899999999999998 33322211110 01 679999999977654 678999998876665431 111221
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
..-.... ...---+|++|+|||-.. .|+||+.||.|.+||...+ ..++..-+..|.+++++. +|.
T Consensus 221 CHr~~~~--~~~~~yPVNai~Fhp~~~----------tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~ 287 (323)
T KOG1036|consen 221 CHRLSEK--DTEIIYPVNAIAFHPIHG----------TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGS 287 (323)
T ss_pred eeecccC--CceEEEEeceeEeccccc----------eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCC
Confidence 1000000 011124899999999876 6999999999999998533 334333357799999997 678
Q ss_pred eeEEccC
Q 019258 327 DVICSLE 333 (343)
Q Consensus 327 ~l~~~~~ 333 (343)
.|+-|++
T Consensus 288 ~LAia~s 294 (323)
T KOG1036|consen 288 LLAIASS 294 (323)
T ss_pred eEEEEec
Confidence 8887763
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.1e-28 Score=221.04 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=185.7
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc----------------------------ee--e------------
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ----------------------------VL--L------------ 105 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~----------------------------~~--~------------ 105 (343)
.|.+.|.+++|+ ++.+||+|+.||.|+||.+... .. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 688999999999 9999999999999999988530 00 0
Q ss_pred ---------------eeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 106 ---------------SVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 106 ---------------~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.......+|.+.|.++.|+ .+.|+++|.|.||+||++... .++.++.+.+ .|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~Hnd--fVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSHND--FVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc-ceeeEEecCC--eeEEEEecccC
Confidence 0111234689999999999 999999999999999999987 5888876555 599999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.++|++|+.|+.||||++.. ..+....... ..|++++|.|+|... +.|+.+|.+++|+.+........
T Consensus 422 DryFiSGSLD~KvRiWsI~d----~~Vv~W~Dl~-------~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD----KKVVDWNDLR-------DLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCcEeecccccceEEeecCc----CeeEeehhhh-------hhheeEEeccCCceE-EEEEeccEEEEEEccCCeEEEee
Confidence 88999999999999999976 4443333222 679999999998765 68999999999999875443332
Q ss_pred ecC-CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-ccccc---ccccceeeecC
Q 019258 248 SGV-GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAE---PCAINSFDIDP 322 (343)
Q Consensus 248 ~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~---~~~i~s~~~~~ 322 (343)
... ..... ..|. .|++++|.|..+. .++..|+|..|+|++...... ..+.. ...-.+-.++.
T Consensus 490 ~I~~~~~Kk---~~~~-rITG~Q~~p~~~~---------~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 490 HIRLHNKKK---KQGK-RITGLQFFPGDPD---------EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred eEeeccCcc---ccCc-eeeeeEecCCCCC---------eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 211 11111 2233 8999999999886 799999999999999843322 22221 12222333444
Q ss_pred CCCCeeEEccCCceEEEEeC
Q 019258 323 QNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|++||||++|--||+|+.
T Consensus 557 -Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 557 -DGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred -CCCEEEEeecCceEEEEeC
Confidence 4699999999999999984
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=218.95 Aligned_cols=278 Identities=12% Similarity=0.127 Sum_probs=214.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-CccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP-HSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..+.+|-.++|+| ...+++++-..+. |++||.-- ..+ ....+|.|+|..+.|+ ...++++|+.|-.
T Consensus 7 skSsRvKglsFHP----~rPwILtslHsG~-----IQlWDYRM---~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHP----KRPWILTSLHSGV-----IQLWDYRM---GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccccceecCC----CCCEEEEeecCce-----eeeehhhh---hhHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence 4667899999999 7889998877653 77998832 222 2335799999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|+||++...+.+. ...+|-.-|..+.|+ -..++|+|+|-+|++|+..+++ +..+..+|.- .|.|..|+| ...
T Consensus 75 IkVWnYk~rrclf---tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnH-YVMcAqFhptEDl 149 (1202)
T KOG0292|consen 75 IKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNH-YVMCAQFHPTEDL 149 (1202)
T ss_pred EEEEecccceehh---hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCce-EEEeeccCCccce
Confidence 9999998544332 234799999999999 7899999999999999999985 6666666665 799999999 999
Q ss_pred EEEEeCCCcEEEEEccc---c--CCC-------------------CCeeE--EecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 171 FVTGGFGYGLQWWDLRR---A--GSG-------------------GPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~---~--~~~-------------------~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+++++.|-+||+||+.. + .++ ..+.. +.+|. ..|+-++|||.-+ ++
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-------RGVNwaAfhpTlp-li 221 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-------RGVNWAAFHPTLP-LI 221 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-------cccceEEecCCcc-eE
Confidence 99999999999999742 0 011 00111 22333 5699999999865 67
Q ss_pred EEEecCCcEEEEEccCCceee--eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSI--VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++|++|+.|++|-+.. .+.. ... .+|.+.|.++.|||... .++|.|+|++|++||..
T Consensus 222 VSG~DDRqVKlWrmne-tKaWEvDtc----------rgH~nnVssvlfhp~q~----------lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNE-TKAWEVDTC----------RGHYNNVSSVLFHPHQD----------LILSNSEDKSIRVWDMT 280 (1202)
T ss_pred EecCCcceeeEEEecc-ccceeehhh----------hcccCCcceEEecCccc----------eeEecCCCccEEEEecc
Confidence 8999999999998865 2222 223 67999999999999876 89999999999999986
Q ss_pred CC--cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ...+..+.....-++.||. -.|++++.|..+.+|+
T Consensus 281 kRt~v~tfrrendRFW~laahP~--lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPE--LNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCC--cceeeeecCCceEEEE
Confidence 43 3344456778889999994 4556666666666654
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=9.9e-27 Score=229.85 Aligned_cols=240 Identities=12% Similarity=0.150 Sum_probs=187.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~ 139 (343)
..|.+.|.+++|+ ++++|++|+.|+.|+||++... ...........+...+.++.|+ +..+++++.||+|++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 4578899999999 8899999999999999997521 1000000011244678999997 678999999999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
||+.+++ ....+..|.. .|++++|++ +..|++|+.|++|++||++. +..+..+..+ ..+.++.|+
T Consensus 560 Wd~~~~~-~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---~~~~~~~~~~--------~~v~~v~~~ 626 (793)
T PLN00181 560 WDVARSQ-LVTEMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSINQ---GVSIGTIKTK--------ANICCVQFP 626 (793)
T ss_pred EECCCCe-EEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---CcEEEEEecC--------CCeEEEEEe
Confidence 9999874 5555566765 799999997 57899999999999999988 6666666532 458999997
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
+....++++|+.||.|++||++....+.... .+|...|..+.|. ++. .++++|.|++|+
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~----------~~h~~~V~~v~f~-~~~----------~lvs~s~D~~ik 685 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTM----------IGHSKTVSYVRFV-DSS----------TLVSSSTDNTLK 685 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEe----------cCCCCCEEEEEEe-CCC----------EEEEEECCCEEE
Confidence 6545678899999999999999865555554 5799999999997 444 799999999999
Q ss_pred EEecCCC--------cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 298 VVEQGEE--------PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 298 ~~~~~~~--------~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|+.... ...+..+...++.+.+++ ++.+|++|++++.+++|+.
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEEC
Confidence 9997521 122233346788899998 4689999999999999974
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.8e-27 Score=212.12 Aligned_cols=279 Identities=19% Similarity=0.165 Sum_probs=224.2
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+..-.|-..|.+++++. +...+++|+.+ ++++|+... .+|+.+++-. .+.+..|. .+.++++|..
T Consensus 367 i~~~GHR~dVRsl~vS~----d~~~~~Sga~~------SikiWn~~t---~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS----DSILLASGAGE------SIKIWNRDT---LKCIRTITCG-YILASKFVPGDRYIVLGTK 432 (888)
T ss_pred eeeccchhheeEEEeec----CceeeeecCCC------cEEEEEccC---cceeEEeccc-cEEEEEecCCCceEEEecc
Confidence 33445677888899988 77777777655 588999954 5666666554 78899999 7788999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-----Cc--eEE-----EEEcCCC
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG-----GG--EFK-----RVYDGNG 156 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-----~~--~~~-----~~~~~~~ 156 (343)
+|.+.+||+.....+ +...+|.+.+.+++.. +..++++|.|.+|++||..- +. +.. ++++-.+
T Consensus 433 ~Gel~vfdlaS~~l~---Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 433 NGELQVFDLASASLV---ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred CCceEEEEeehhhhh---hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999999844333 3334799999999998 88999999999999999732 11 111 2233333
Q ss_pred ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.|.|++++| +.+++.+=.|+++++|=+.+ -+-..++.+|. =||.|++.+|+. .++++|+.|..|++
T Consensus 510 --dvL~v~~Spdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHk-------LPV~smDIS~DS-klivTgSADKnVKi 576 (888)
T KOG0306|consen 510 --DVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHK-------LPVLSMDISPDS-KLIVTGSADKNVKI 576 (888)
T ss_pred --cEEEEEEcCCCcEEEEEeccCeEEEEEecc---eeeeeeecccc-------cceeEEeccCCc-CeEEeccCCCceEE
Confidence 499999999 66677777799999998877 44445566665 789999999986 57789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCccccccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPC 313 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~ 313 (343)
|-+.-+.+...+. +|...|.+|.|.|... .+++||.||.++.||.. +....+..+..
T Consensus 577 WGLdFGDCHKS~f-----------AHdDSvm~V~F~P~~~----------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 577 WGLDFGDCHKSFF-----------AHDDSVMSVQFLPKTH----------LFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred eccccchhhhhhh-----------cccCceeEEEEcccce----------eEEEecCcceEEeechhhhhhheeeccchh
Confidence 9998888777765 6999999999999766 79999999999999753 55667777789
Q ss_pred ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 314 AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 314 ~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.|.++++.| +|.++++++.|..|++|.+
T Consensus 636 ev~cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 636 EVWCLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence 999999999 7899999999999999976
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=205.63 Aligned_cols=293 Identities=15% Similarity=0.142 Sum_probs=215.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCC--CCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWT--PPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~--~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
+++.|++++.-| .+.+|+|||+|.+ +++||+..- ..+..+.++. ....|+++.|+ .++.|++.+..-
T Consensus 166 gtk~Vsal~~Dp----~GaR~~sGs~Dy~-----v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 166 GTKIVSALAVDP----SGARFVSGSLDYT-----VKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred CceEEEEeeecC----CCceeeeccccce-----EEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 557899999999 8999999999965 669999542 2222233333 23579999999 888888888888
Q ss_pred cEEEEEccCceeeee---------eccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcC----CC
Q 019258 93 SLHVLSSAMQVLLSV---------DENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDG----NG 156 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~---------~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~----~~ 156 (343)
..+|+|-...+-+.. ....++|...+++.+|+ .+.|++++.||++++||+.+.+....++.. ..
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 899999764333322 22346799999999999 778999999999999999886545555432 22
Q ss_pred ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
...++.++|++ +..+++|..||.|.+||.+. ...++...++..+... ..|+||.|+++|. +|++-+.|+++++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~-~~v~p~~~vk~AH~~g----~~Itsi~FS~dg~-~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS-RTVRPVMKVKDAHLPG----QDITSISFSYDGN-YLLSRGFDDTLKV 390 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCC-cccccceEeeeccCCC----CceeEEEeccccc-hhhhccCCCceee
Confidence 34689999999 88899999999999999865 1123333343222111 4699999999986 4578899999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe------cCCeEEEEecC--CCccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS------EDGILAVVEQG--EEPFE 307 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s------~dg~i~~~~~~--~~~~~ 307 (343)
||+|+..+|+..... ....-+-..++|+|+.. .+++|+ .-|+|..++.. +....
T Consensus 391 WDLrq~kkpL~~~tg--------L~t~~~~tdc~FSPd~k----------li~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTG--------LPTPFPGTDCCFSPDDK----------LILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred eeccccccchhhhcC--------CCccCCCCccccCCCce----------EEEecccccCCCCCceEEEEeccceeeEEE
Confidence 999998887765411 11233557899999987 677764 33578888764 22333
Q ss_pred ccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 308 LLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 308 ~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+......|..+.|||.. +.++.|+.||.++||.-|
T Consensus 453 i~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ecCCCceEEEEeecchh-hheeeecCCCceEEEECc
Confidence 33345789999999965 888888889999999765
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3.5e-26 Score=199.62 Aligned_cols=293 Identities=17% Similarity=0.114 Sum_probs=209.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|++|+++| ++.+|+|++.|++ +.++|=.+.+....+ ..-.|.|.|.++.|+ +..++++.+.|.+
T Consensus 188 ~HskFV~~VRysP----DG~~Fat~gsDgk-----i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP----DGSRFATAGSDGK-----IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred ccccceeeEEECC----CCCeEEEecCCcc-----EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 4778999999999 8999999999975 458876543332222 245799999999999 9999999999999
Q ss_pred EEEEEccCceee----------------------------------------eeeccCCccccCeEEEEec--CCEEEEE
Q 019258 94 LHVLSSAMQVLL----------------------------------------SVDENSGFHVGPISGVDLT--GSECVSV 131 (343)
Q Consensus 94 v~v~~~~~~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~--~~~~~s~ 131 (343)
++|||+.....+ .+.....+|...|+++..+ ++.|++|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999998532111 1112235688999999999 8999999
Q ss_pred eCCCcEEEEECCCCceEEEEE-cCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC---------CCCeeEEeccc
Q 019258 132 GEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS---------GGPVLQFKGNF 201 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~ 201 (343)
+.||.|.-||..++. .-++. ..|.. .|.+++-.....+++.+.|.++++.++...+- .+|. .+....
T Consensus 339 syDG~I~~W~~~~g~-~~~~~g~~h~n-qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~ 415 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGT-SDRLAGKGHTN-QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLS 415 (603)
T ss_pred ccCceEEEEecCCcc-ccccccccccc-eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcC
Confidence 999999999998874 33333 34444 78888877667788888888888887632000 0000 000000
Q ss_pred C-----------------C------------------------------------------------CCCcccCeEEEEE
Q 019258 202 G-----------------S------------------------------------------------QGKASGMIHSVDI 216 (343)
Q Consensus 202 ~-----------------~------------------------------------------------~~~~~~~i~~v~~ 216 (343)
+ . ...+.++|+++++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 0 0 0011266777777
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+|++. +||+|...+.|.+||..+.+...... ..|.+.|.+|+|+|++. +++++|-|-+|
T Consensus 496 Spd~~-yla~~Da~rkvv~yd~~s~~~~~~~w----------~FHtakI~~~aWsP~n~----------~vATGSlDt~V 554 (603)
T KOG0318|consen 496 SPDGA-YLAAGDASRKVVLYDVASREVKTNRW----------AFHTAKINCVAWSPNNK----------LVATGSLDTNV 554 (603)
T ss_pred CCCCc-EEEEeccCCcEEEEEcccCceeccee----------eeeeeeEEEEEeCCCce----------EEEeccccceE
Confidence 77765 34667777777777776644433333 45999999999999988 89999999999
Q ss_pred EEEecCCCcc--cccc-cccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEEPF--ELLA-EPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~~~--~~~~-~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.+|+-..... .... +...|+++.|-.+ ..|++++.|..|.+|+-+
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wlde--~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLDE--STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEecC--ceEEeccCcceeEEeccc
Confidence 9998754432 2222 2456999999853 799999999999999853
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=201.89 Aligned_cols=282 Identities=11% Similarity=0.014 Sum_probs=218.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|=-+.|+| ++++|||+|.|.+.. +|.+..+...++. +-..|..+|.-+.|+ ++++|++++.+..
T Consensus 222 ~htdEVWfl~FS~----nGkyLAsaSkD~Tai-----iw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 222 DHTDEVWFLQFSH----NGKYLASASKDSTAI-----IWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred hCCCcEEEEEEcC----CCeeEeeccCCceEE-----EEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 5888999999999 999999999997644 8888544444443 335788999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+.+||+..++.....+. +|...+.+++|. +..+++|+.|+++.+||++... ....++.....|.+++..+ +..
T Consensus 293 ~~lwDv~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeeccCCcchhhhhccc--CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcE
Confidence 99999987665544432 355688999998 8899999999999999998752 3333333333699999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
+++.+.|..|++++.+. ......+. .+ .+|+++..+.++.. +++-=.+..+.+||+.....+..+.
T Consensus 369 vl~v~~d~~i~l~~~e~---~~dr~lis-e~-------~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~~lv~kY~-- 434 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREA---RVDRGLIS-EE-------QPITSFSISKDGKL-ALVNLQDQEIHLWDLEENKLVRKYF-- 434 (519)
T ss_pred EEEEecccceeeechhh---hhhhcccc-cc-------CceeEEEEcCCCcE-EEEEcccCeeEEeecchhhHHHHhh--
Confidence 99999999999999876 22221121 11 67999999998865 4566788999999998766665655
Q ss_pred CCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcc-cccccccccceeeecCCCCC
Q 019258 251 GTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPF-ELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 251 ~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~-~~~~~~~~i~s~~~~~~~~~ 326 (343)
+|.. -+..=+|-..+.. +++|||+|+.|++|+.. ..+. ++-.+...||.++++|.++.
T Consensus 435 ---------Ghkq~~fiIrSCFgg~~~~---------fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 435 ---------GHKQGHFIIRSCFGGGNDK---------FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred ---------cccccceEEEeccCCCCcc---------eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 3443 3444556555544 89999999999999875 3344 44455689999999999999
Q ss_pred eeEEccCCceEEEEeC
Q 019258 327 DVICSLEWESIAIVSR 342 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~~ 342 (343)
.+++|+||++|+||..
T Consensus 497 m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGP 512 (519)
T ss_pred HhhccCCCCeEEEecC
Confidence 9999999999999963
No 52
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=202.40 Aligned_cols=284 Identities=16% Similarity=0.213 Sum_probs=212.0
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc--------CCCeEEEEcCCC
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS--------HQSLVAASTLSG 92 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~--------~~~~l~~~s~dg 92 (343)
..+.-.| ..++++.+=.+.++. .|++|=..... .+.+...+-.+..-.|++|. .++++|.|+.|.
T Consensus 129 de~~V~p----sDnlIl~ar~eddvs--~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp 202 (463)
T KOG0270|consen 129 DEEQVKP----SDNLILCARNEDDVS--YLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP 202 (463)
T ss_pred ccceecc----CCcEEEEeeccCCce--EEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc
Confidence 3444555 556666665554444 35555543222 22222223334455677765 467999999999
Q ss_pred cEEEEEccCceee----eee--------------ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 93 SLHVLSSAMQVLL----SVD--------------ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 93 ~v~v~~~~~~~~~----~~~--------------~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
.|.|||+.-...+ .+- ....+|+..|.++.|+ .+.|+|||.|.+|++||+.+++ +...
T Consensus 203 ~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s 281 (463)
T KOG0270|consen 203 EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSS 281 (463)
T ss_pred eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-ccee
Confidence 9999998611111 110 0122588888999998 7899999999999999999995 7777
Q ss_pred EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 152 YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
+..|.. .|.+++|++ +..+++|++|+++++.|.|. +......++.. +.|-.++|+|...+.+++++.
T Consensus 282 ~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~--~~~s~~~wk~~--------g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 282 ITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRD--PSNSGKEWKFD--------GEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred hhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccC--ccccCceEEec--------cceEEEEecCCCceeEEEecC
Confidence 666665 899999999 88999999999999999996 34433333322 679999999999999999999
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccc
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFEL 308 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~ 308 (343)
||+|+-+|+|+...|.-.. ++|.++|.+|.+++..+. .++++|.|+.+.+|+.... +..+
T Consensus 351 dG~v~~~D~R~~~~~vwt~----------~AHd~~ISgl~~n~~~p~---------~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTL----------KAHDDEISGLSVNIQTPG---------LLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CceEEeeecCCCCCceeEE----------EeccCCcceEEecCCCCc---------ceeeccccceEEEEeecCCCCccc
Confidence 9999999999998888777 789999999999999997 8999999999999997533 2222
Q ss_pred cccc---cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 309 LAEP---CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 309 ~~~~---~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.... ....++...|+....++.|+..+.++||+.
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 2221 346778888877789999999999999975
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-27 Score=209.95 Aligned_cols=275 Identities=15% Similarity=0.207 Sum_probs=218.8
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
+.+=+.|+. .+.++.|... .+.+|+..... ...+..+. ...|+++.|+ ++.+|++|..+|.|.|||
T Consensus 179 Y~nlldWss-----~n~laValg~------~vylW~~~s~~-v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 179 YLNLLDWSS-----ANVLAVALGQ------SVYLWSASSGS-VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred hhhHhhccc-----CCeEEEEecc------eEEEEecCCCc-eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence 344556766 5567777643 36799986543 22244444 7899999999 999999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d 177 (343)
..+...+.... ..|...|.+++|++..+.+|+.|+.|..+|++........+..|.. .|..++|++ ..++++|+.|
T Consensus 246 ~~~~k~~~~~~--~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-eVCgLkws~d~~~lASGgnD 322 (484)
T KOG0305|consen 246 VKEQKKTRTLR--GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-EVCGLKWSPDGNQLASGGND 322 (484)
T ss_pred hhhcccccccc--CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc-eeeeeEECCCCCeeccCCCc
Confidence 88544333222 1289999999999999999999999999999986555554555665 899999999 9999999999
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
+.+.|||... .+++..+..|. +.|.+++|+|-.+.+||+|+ .|++|++||..++.......
T Consensus 323 N~~~Iwd~~~---~~p~~~~~~H~-------aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd------- 385 (484)
T KOG0305|consen 323 NVVFIWDGLS---PEPKFTFTEHT-------AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD------- 385 (484)
T ss_pred cceEeccCCC---ccccEEEeccc-------eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------
Confidence 9999999977 78888888776 88999999999999999966 59999999999865544433
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEE--ecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC--SEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~--s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~ 331 (343)
-...|..|.|++.... |+++ -.++.|.+|+... ....+..+...|..++++| +|..+++|
T Consensus 386 -----tgsQVcsL~Wsk~~kE----------i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~ 449 (484)
T KOG0305|consen 386 -----TGSQVCSLIWSKKYKE----------LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTG 449 (484)
T ss_pred -----cCCceeeEEEcCCCCE----------EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEe
Confidence 4578999999999874 4544 4556789998753 3456666677899999999 68999999
Q ss_pred cCCceEEEEeCC
Q 019258 332 LEWESIAIVSRP 343 (343)
Q Consensus 332 ~~~~~i~~~~~~ 343 (343)
+.|+.+++|+-|
T Consensus 450 a~DETlrfw~~f 461 (484)
T KOG0305|consen 450 AADETLRFWNLF 461 (484)
T ss_pred cccCcEEecccc
Confidence 999999999853
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8e-27 Score=215.63 Aligned_cols=246 Identities=17% Similarity=0.226 Sum_probs=197.7
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|...|+.++|+| ++.++++++.|++ |++|+++.+ ........+|...|++++|+ .++++++|+.|++
T Consensus 200 ~~h~~~v~~~~fs~----d~~~l~s~s~D~t-----iriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP----DGSYLLSGSDDKT-----LRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cccccceeeeEECC----CCcEEEEecCCce-----EEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 35888999999999 8889999999975 889999332 12223334899999999999 7789999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCcc-ceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLV-GFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~-~v~~~~~~~-~ 168 (343)
|+||++...+..... .+|.++|++++++ +..+++++.|+.|++||+.++.. +......+... .+++++|+| +
T Consensus 270 vriWd~~~~~~~~~l---~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKL---KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EEEEeccCCeEEEee---eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 999999975554444 3799999999999 89999999999999999999842 34455555553 589999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.++++++.|+.+++||++. ...+..+.++.... ..+.+....+.+. .+++|+.|+.|++||+.+... ....
T Consensus 347 ~~ll~~~~d~~~~~w~l~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~-~~~l 417 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRS---GKSVGTYTGHSNLV----RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGI-LQRL 417 (456)
T ss_pred cEEEEecCCCeEEEEEccC---CcceeeecccCCcc----eeEecccccCCCC-eEEEEeCCceEEEEeCCccch-hhhh
Confidence 8999999999999999998 77787887776321 2455556667665 457999999999999987433 3333
Q ss_pred cCCCCcccccCCc-cccEEEEEEeecCCCCcCCCCCccceEEEe--cCCeEEEEecC
Q 019258 249 GVGTGEAVTHSLS-ESEVWEVQYDCHTKSSNISSSRVLPAMFCS--EDGILAVVEQG 302 (343)
Q Consensus 249 ~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s--~dg~i~~~~~~ 302 (343)
.+| ...+..+.++|..+ ++++++ .|+.+++|+..
T Consensus 418 ----------~~h~~~~~~~~~~~~~~~----------~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 ----------EGHSKAAVSDLSSHPTEN----------LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ----------cCCCCCceeccccCCCcC----------eeeecCcCCCceEEEecCC
Confidence 568 88999999999877 678877 78999999875
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-27 Score=184.99 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=184.1
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
-.+.++|.++.|. ++++.++++.|.+|++|+...+..+... .+|...|..++.+ ...|++|+.|..+.+||+.+
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY---sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY---SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee---cCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 3577999999999 9999999999999999998755544333 4688899998877 78999999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ +.+.+.+|.. .|..++|+. ...+++|+.|..+++||.|+ ...+|++.+.... ..|.+|.... +.
T Consensus 91 Gk-v~Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS-~s~ePiQildea~-------D~V~Si~v~~---he 157 (307)
T KOG0316|consen 91 GK-VDRRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRS-RSFEPIQILDEAK-------DGVSSIDVAE---HE 157 (307)
T ss_pred Ce-eeeecccccc-eeeEEEecCcceEEEeccccceeEEEEccc-CCCCccchhhhhc-------CceeEEEecc---cE
Confidence 95 6667777877 899999999 88899999999999999998 2245555544332 6699999875 45
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+-||+++.||+|.+.....++ ..+|+++.|+++++ .++.++.|++|++.|+..
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~-------------g~pit~vs~s~d~n----------c~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYF-------------GHPITSVSFSKDGN----------CSLASSLDSTLRLLDKET 214 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhc-------------CCcceeEEecCCCC----------EEEEeeccceeeecccch
Confidence 6899999999999999987666655 56899999999998 688999999999998753
Q ss_pred -Ccccccccc-cccceee--ecCCCCCeeEEccCCceEEEEe
Q 019258 304 -EPFELLAEP-CAINSFD--IDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 304 -~~~~~~~~~-~~i~s~~--~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+....+..+ ..=+.++ ++. ....+++|++||.+|+|.
T Consensus 215 GklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred hHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEE
Confidence 222222221 1111111 111 237999999999999996
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.2e-28 Score=204.11 Aligned_cols=278 Identities=15% Similarity=0.148 Sum_probs=214.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.-.++.+.|.+ +...|+||+.|.. |++|++.... .....++ +..+.|++++|. ++..+++++.|+.+
T Consensus 174 h~gev~~v~~l~----~sdtlatgg~Dr~-----Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 174 HEGEVHDVEFLR----NSDTLATGGSDRI-----IKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred cccccceeEEcc----Ccchhhhcchhhh-----hhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 556899999999 7789999999965 5599995433 2223333 456789999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-CCE-EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSE-CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
++|++...+.+ ....+|+..|+++.+. +.. +++++.|.++++||+.... +.+.+.... .+.++... ...++
T Consensus 244 r~Wnvd~~r~~---~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S--~cnDI~~~-~~~~~ 316 (459)
T KOG0288|consen 244 RLWNVDSLRLR---HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGS--QCNDIVCS-ISDVI 316 (459)
T ss_pred eeeeccchhhh---hhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eeccccccc--cccceEec-ceeee
Confidence 99999855443 3345799999999998 444 9999999999999998863 444433333 36666554 45688
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
++-.|++|++||.|. ..+....... +.|++++.++++..++ +++-|.++.+.|+|+.+-...+...+.
T Consensus 317 SgH~DkkvRfwD~Rs---~~~~~sv~~g--------g~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRS---ADKTRSVPLG--------GRVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ecccccceEEEeccC---CceeeEeecC--------cceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeecccc
Confidence 888899999999999 6776666644 6799999999987765 568999999999999766555554332
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccc-c-cc--ccccceeeecCCCCCee
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFEL-L-AE--PCAINSFDIDPQNPSDV 328 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~-~-~~--~~~i~s~~~~~~~~~~l 328 (343)
. .+ ..++.+.|+|++. ++++||.||.|++|+-..+..+. + .. +..|+++.|+| .|+.|
T Consensus 385 k-----~a--sDwtrvvfSpd~~----------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~L 446 (459)
T KOG0288|consen 385 K-----CA--SDWTRVVFSPDGS----------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGL 446 (459)
T ss_pred c-----cc--cccceeEECCCCc----------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchh
Confidence 2 22 3489999999988 89999999999999976443322 2 22 34699999999 78999
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
++++.++++.+|+
T Consensus 447 lsadk~~~v~lW~ 459 (459)
T KOG0288|consen 447 LSADKQKAVTLWT 459 (459)
T ss_pred hcccCCcceEecC
Confidence 9999999998884
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=8.1e-28 Score=207.85 Aligned_cols=285 Identities=13% Similarity=0.087 Sum_probs=222.8
Q ss_pred ccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEE
Q 019258 11 QVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 11 ~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
+++.+ .|.+-|++++|.| ..+.+|++++.|+. ++||++-. ...|+ +...|..+|.+++|+ .+..|++
T Consensus 206 ~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~-----vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGL-----VKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred heeeccCCccccchhhhcc---ceeeEEEecCCCce-----EEEEEEec--CcceehhhhcchhhhhhhhccccCCeeee
Confidence 55556 5889999999999 67899999999975 66999943 23344 446788999999999 8999999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.|+.+++||+++++....... ....+++.+. .+.|++|+.|+.|+.||+++++ +.+.+..|-. .|..+.
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg-~i~~i~ 349 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLG-AILDIT 349 (503)
T ss_pred eecceeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhh-heeeeE
Confidence 99999999999998776654422 1356788887 4789999999999999999985 6666665555 899999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|.+ +.+++++++|+.++||+.+. +-++....... + ....|+..+|++.. +++=+-|..|.++.+...-.
T Consensus 350 F~~~g~rFissSDdks~riWe~~~---~v~ik~i~~~~--~----hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRI---PVPIKNIADPE--M----HTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCC---Cccchhhcchh--h----ccCcceecCCCCCe-ehhhccCceEEEEecccccc
Confidence 999 89999999999999999988 55554433222 2 33779999999875 56778899999998654211
Q ss_pred --eeeeecCCCCcccccCCc--cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccce
Q 019258 244 --SIVLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINS 317 (343)
Q Consensus 244 --~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s 317 (343)
..... ++| .+.-..+.|+|++. +|++|+.||.+++|+.. .....+..+..++..
T Consensus 420 ~nkkK~f----------eGh~vaGys~~v~fSpDG~----------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 420 LNKKKRF----------EGHSVAGYSCQVDFSPDGR----------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred cCHhhhh----------cceeccCceeeEEEcCCCC----------eEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 11112 344 35567899999998 79999999999999875 223333344589999
Q ss_pred eeecCCCCCeeEEccCCceEEEEe
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++|||...+.|+|++=+|-|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 999999889999999889999985
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-26 Score=206.53 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=198.3
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..+|-++.|+ .+..++++-.+|.|.||+.++...+...+ ...-||.+..|- -+.+++|++|+.|++++..+.
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe---V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE---VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee---ecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 366789999999 88899999999999999998655443332 234578888777 788999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
.+ ...++.|.. .|++++.+| ...++|+++|-+|++||-.. .=.+...|++|. ..|++++|+|+..+.|
T Consensus 88 ek-V~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~-------HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 88 EK-VKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWACEQTFEGHE-------HYVMQVAFNPKDPNTF 156 (794)
T ss_pred ee-eEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccC--ceeeeeEEcCcc-------eEEEEEEecCCCccce
Confidence 54 455566666 799999999 88999999999999999977 334455688777 7799999999999999
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++++-|++|++|.+.++ .|...+ ++|+..|++|.|-+-+.. |+|+||++|.+|++||++.+
T Consensus 157 aS~sLDrTVKVWslgs~-~~nfTl----------~gHekGVN~Vdyy~~gdk--------pylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSP-HPNFTL----------EGHEKGVNCVDYYTGGDK--------PYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred eeeeccccEEEEEcCCC-CCceee----------eccccCcceEEeccCCCc--------ceEEecCCCceEEEeecchH
Confidence 99999999999999874 444444 689999999999876532 28999999999999998744
Q ss_pred --cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 305 --PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 305 --~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
..++-.+-..|+.+.++|.. ..+++|++||+++||+.
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNS 256 (794)
T ss_pred HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecC
Confidence 34444456789999999954 99999999999999974
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=182.45 Aligned_cols=271 Identities=15% Similarity=0.079 Sum_probs=205.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
+...|..++++- ++++.+|++.|++ +++|+... ..++. .-.|..+|.+++-+ +...|++++.|..+
T Consensus 16 ~qgaV~avryN~----dGnY~ltcGsdrt-----vrLWNp~r---g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 16 AQGAVRAVRYNV----DGNYCLTCGSDRT-----VRLWNPLR---GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccceEEEEEcc----CCCEEEEcCCCce-----EEeecccc---cceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 556899999999 9999999999975 67999843 22333 34677899999998 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC-ceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-GEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
.+||+++++... ..++|.+.|+.+.|+ ...+++|+.|.++++||.++. ..+.+++..... .|.++... ...+
T Consensus 84 ~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~-~heI 158 (307)
T KOG0316|consen 84 QVWDVNTGKVDR---RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA-EHEI 158 (307)
T ss_pred EEEEcccCeeee---ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec-ccEE
Confidence 999999765443 335799999999999 778999999999999999873 246666655544 68888765 5789
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++|+.||+++.||+|. +.....+.+ .||+|+.|++++. ..++++-|+++++.|-.+++....+
T Consensus 159 vaGS~DGtvRtydiR~---G~l~sDy~g---------~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sY---- 221 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRK---GTLSSDYFG---------HPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSY---- 221 (307)
T ss_pred EeeccCCcEEEEEeec---ceeehhhcC---------CcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHh----
Confidence 9999999999999999 665544443 6699999999986 5567899999999998886544333
Q ss_pred CCcccccCCccccEEEEE--EeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccc-cceeeecCCCCC
Q 019258 252 TGEAVTHSLSESEVWEVQ--YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCA-INSFDIDPQNPS 326 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~--~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~-i~s~~~~~~~~~ 326 (343)
.+|...-+.+. ++.... .+++||+||.+++|+.-++. ..-+.. ..+ +.+++.+|....
T Consensus 222 -------kGhkn~eykldc~l~qsdt----------hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 222 -------KGHKNMEYKLDCCLNQSDT----------HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred -------cccccceeeeeeeecccce----------eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 45666554444 443333 79999999999999985443 222333 334 789999996655
Q ss_pred eeEEccCCceEEEE
Q 019258 327 DVICSLEWESIAIV 340 (343)
Q Consensus 327 ~l~~~~~~~~i~~~ 340 (343)
++++++ +.+++|
T Consensus 285 f~~A~~--~~~~~~ 296 (307)
T KOG0316|consen 285 FITATG--HGDLFW 296 (307)
T ss_pred eeEecC--Cceece
Confidence 555553 345554
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4e-27 Score=199.99 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=193.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC--CCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT--PPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~--~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|.+.|.-|.|+| +.++|++++.|.. +++||+...+ +...++ +...+.+++|. ++..+++|+.|+
T Consensus 267 gh~~~V~yi~wSP----DdryLlaCg~~e~-----~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 267 GHSQPVSYIMWSP----DDRYLLACGFDEV-----LSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred cccCceEEEEECC----CCCeEEecCchHh-----eeeccCCcch---hhhhcccCcCCCcceeEEccCCceeEecCCCC
Confidence 6889999999999 8999999998854 7899996532 233333 34678999999 899999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
++..|++..+. ...|...-...|.+++.. |+.+++.+.|..+++++.+... -+.+...+. +|++++.+. +.
T Consensus 335 ~i~~wdlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise~~--~its~~iS~d~k 408 (519)
T KOG0293|consen 335 TIIMWDLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-DRGLISEEQ--PITSFSISKDGK 408 (519)
T ss_pred cEEEecCCcch---hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-hhccccccC--ceeEEEEcCCCc
Confidence 99999998332 234544445678999887 9999999999999999987752 333444444 699999998 67
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
++++--.+..+++||+.. ...+.++.+|... ..+-.-+|.-....++++|++|++|+||+.++ ..++..+
T Consensus 409 ~~LvnL~~qei~LWDl~e---~~lv~kY~Ghkq~-----~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~L- 478 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEE---NKLVRKYFGHKQG-----HFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVL- 478 (519)
T ss_pred EEEEEcccCeeEEeecch---hhHHHHhhccccc-----ceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEee-
Confidence 777777799999999987 6777788877621 34555566655556889999999999999876 6677776
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|...|++|+|+|.++. +++|+|+||+|++|....
T Consensus 479 ---------sGHs~~vNcVswNP~~p~---------m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 ---------SGHSKTVNCVSWNPADPE---------MFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------cCCcceeeEEecCCCCHH---------HhhccCCCCeEEEecCCc
Confidence 789999999999999998 999999999999998764
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=194.13 Aligned_cols=253 Identities=14% Similarity=0.196 Sum_probs=210.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
-|.|.+.|+.+.|+| ....|++||.|++ ++++|++.....+.++.++...+|.++.|+ .+++|++|+.-.
T Consensus 168 lYDH~devn~l~FHP----re~ILiS~srD~t-----vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHP----RETILISGSRDNT-----VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred hhhccCcccceeecc----hhheEEeccCCCe-----EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 358999999999999 8889999999976 669999776556667778888899999999 899999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
.+++||++..+..........|++.|+++.++ ++..++++.||.|++||--+++.+..+-..|+...|.+..|.. +.
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 99999999777665544455799999999999 8999999999999999998876555555667777899999998 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEeccc--CCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF--GSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
++++.|.|..+++|.+.+ ++++..+.+.. +.+ ..-+...|+....+++.---..+.++-||.|+......+
T Consensus 319 yiLsSG~DS~vkLWEi~t---~R~l~~YtGAg~tgrq----~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEIST---GRMLKEYTGAGTTGRQ----KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred EEeecCCcceeeeeeecC---CceEEEEecCCcccch----hhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 999999999999999999 88988887653 112 223345567776777666556778999999996554444
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
. .+|++.+..+..+|.++ .+++||.|-+.+.|...
T Consensus 392 s----------lgHn~a~R~i~HSP~~p----------~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 392 S----------LGHNGAVRWIVHSPVEP----------AFMTCSDDFRARFWYRR 426 (430)
T ss_pred c----------cCCCCCceEEEeCCCCC----------ceeeecccceeeeeeec
Confidence 4 67999999999999998 79999999999999753
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=190.92 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=199.5
Q ss_pred CccccCCcccceeeE------EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CC
Q 019258 10 PQVHRFPQSKYIDAV------RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQ 82 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v------~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~ 82 (343)
|+|..=..++.|-.. -|+.+...+..+.++++.|-+.+ +|+.-.. ..+.+++|..-|.+++|+ +.
T Consensus 41 pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak-----vw~a~tg---delhsf~hkhivk~~af~~ds 112 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK-----VWDAVTG---DELHSFEHKHIVKAVAFSQDS 112 (334)
T ss_pred chhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh-----hhhhhhh---hhhhhhhhhheeeeEEecccc
Confidence 444444555666544 57665444557778888886644 9998332 225678899999999999 88
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
+.|++|+.+..++||+++..+.. .....+|.+.|..+-|. .+.|+|.+.|++|++||.++++.+..+. ... +|
T Consensus 113 ~~lltgg~ekllrvfdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s--~V 187 (334)
T KOG0278|consen 113 NYLLTGGQEKLLRVFDLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNS--PV 187 (334)
T ss_pred hhhhccchHHHhhhhhccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCC--CC
Confidence 99999999999999999843311 22234799999999998 7889999999999999999997555554 333 59
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++..++.+.+++..+.+.|++||... ..+++.++.. ..|.+..++|+. .++++|++|..++.||..+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaks---f~~lKs~k~P--------~nV~SASL~P~k-~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKS---FGLLKSYKMP--------CNVESASLHPKK-EFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred cceeeccCCCEEEEecCceeEEecccc---ccceeeccCc--------cccccccccCCC-ceEEecCcceEEEEEeccC
Confidence 999999988899999999999999988 7778777754 348999999987 6889999999999999999
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++..-.+. ++|.++|.+|.|+|++. ..+++|+||+|++|...
T Consensus 256 geEi~~~n----------kgh~gpVhcVrFSPdGE----------~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 256 GEEIGSYN----------KGHFGPVHCVRFSPDGE----------LYASGSEDGTIRLWQTT 297 (334)
T ss_pred Cceeeecc----------cCCCCceEEEEECCCCc----------eeeccCCCceEEEEEec
Confidence 87766654 67999999999999988 68999999999999864
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4e-25 Score=204.03 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=169.3
Q ss_pred cCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee----eeeeccCCccccCeEEEEec---CCEEEEEeCCCcE
Q 019258 67 QWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL----LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRV 137 (343)
Q Consensus 67 ~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~----~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v 137 (343)
...|.+.|++++|+ ++.+|++++.||+|++|++..... ........+|...|.++.|+ ++.|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 34788999999998 567999999999999999974311 01112234699999999998 3689999999999
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
++||+.++. ....+..|.. .|.+++|++ +..|++++.|++|++||+++ ++.+..+..|.+ .....+.|
T Consensus 151 rIWDl~tg~-~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rs---g~~v~tl~~H~~------~~~~~~~w 219 (493)
T PTZ00421 151 NVWDVERGK-AVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRD---GTIVSSVEAHAS------AKSQRCLW 219 (493)
T ss_pred EEEECCCCe-EEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCC---CcEEEEEecCCC------CcceEEEE
Confidence 999999884 5555566665 799999999 88999999999999999999 777777776652 23556788
Q ss_pred cCCCCeEEEEE---ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-c
Q 019258 217 HPSRKHTCLAG---GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-E 292 (343)
Q Consensus 217 ~p~~~~~~~sg---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~ 292 (343)
.|++..++.+| +.|+.|++||+|+...+..... ..+...+....|++++. .|++++ .
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---------~d~~~~~~~~~~d~d~~----------~L~lggkg 280 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---------LDQSSALFIPFFDEDTN----------LLYIGSKG 280 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---------cCCCCceEEEEEcCCCC----------EEEEEEeC
Confidence 88876666555 3589999999998776666542 11334566677888877 577776 5
Q ss_pred CCeEEEEecCCCcccccc---cccccceeeecC
Q 019258 293 DGILAVVEQGEEPFELLA---EPCAINSFDIDP 322 (343)
Q Consensus 293 dg~i~~~~~~~~~~~~~~---~~~~i~s~~~~~ 322 (343)
||.|++|+...+...... ...++..+.+.|
T Consensus 281 Dg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 281 EGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 999999998644322111 134677777777
No 64
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=196.16 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=207.8
Q ss_pred CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 65 HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
.+..+|..+|+.+.|+ ...+.++++.|++|++||..+++. .++.++|...+.++.++ |+++++|+.|-.+++||
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 3445677889999998 666778888999999999986654 45667899999999998 99999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
..+...+.+...+|+- .|.++.|.| ++.+++++.|.+|+.||+.+ +.++.++.+|. .++..++.+.+|
T Consensus 179 ~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~t---g~cv~t~~~h~-------ewvr~v~v~~DG 247 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDT---GYCVKTFPGHS-------EWVRMVRVNQDG 247 (406)
T ss_pred HHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEeccc---ceeEEeccCch-------HhEEEEEecCCe
Confidence 9873334444455655 799999999 99999999999999999999 89999999887 889999999987
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC-----cCCCCCccceEEEecCCe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS-----NISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~-----~~~~~~~~~l~s~s~dg~ 295 (343)
.|+++++.|.++++|-+.+.+....+ ..|+.+|-+++|-|....+ .++.+--..+.++|.|++
T Consensus 248 -ti~As~s~dqtl~vW~~~t~~~k~~l-----------R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 248 -TIIASCSNDQTLRVWVVATKQCKAEL-----------REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred -eEEEecCCCceEEEEEeccchhhhhh-----------hccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 48899999999999999875443333 5699999999999876533 122222337899999999
Q ss_pred EEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 296 LAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 296 i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|++||-.. -.+++..+...|.+++|+| .|+||++..||..+++|+
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEE
Confidence 99999754 4578888889999999999 689999999999999996
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-25 Score=207.28 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=218.0
Q ss_pred cCCCCccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCC
Q 019258 6 VRTPPQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQS 83 (343)
Q Consensus 6 ~~~~~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~ 83 (343)
+|+-+.+++| .|..+|..|+|+| .+.+||+|+.|- +|++|+++.. ..+.+..+|-..|..+.|+ .-.
T Consensus 38 YRM~tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDy-----kIkVWnYk~r--rclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 38 YRMGTLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDY-----KIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred hhhhhHHhhhhccCCccceeeecC----CCCeEEecCCcc-----EEEEEecccc--eehhhhccccceeEEeeccCCCc
Confidence 5677788999 5899999999999 889999999884 3679999552 2224556899999999999 889
Q ss_pred eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC--------C--------
Q 019258 84 LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG--------G-------- 145 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~--------~-------- 145 (343)
.++++|.|.+|+||+......+.+. ++|.--|.|-+|. .+.++|+|-|-+|++||+.. +
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 9999999999999999876666655 3688899999999 78999999999999999842 0
Q ss_pred ------------ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecccCCCCCcccC
Q 019258 146 ------------GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGM 210 (343)
Q Consensus 146 ------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~ 210 (343)
..+..+.++|+. +|.-++|+| -..+++|++|+.|++|.... .+. +-++.+|. ..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne---tKaWEvDtcrgH~-------nn 252 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVDTCRGHY-------NN 252 (1202)
T ss_pred cccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeEEEecc---ccceeehhhhccc-------CC
Confidence 012345567777 899999999 88999999999999998865 232 22344444 78
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
|.++-|||.. .++++.++|++|++||+.+......+. ..++.-|.++-||..+ |+.+
T Consensus 253 Vssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfr-----------rendRFW~laahP~lN-----------LfAA 309 (1202)
T KOG0292|consen 253 VSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFR-----------RENDRFWILAAHPELN-----------LFAA 309 (1202)
T ss_pred cceEEecCcc-ceeEecCCCccEEEEecccccceeeee-----------ccCCeEEEEEecCCcc-----------eeee
Confidence 9999999975 567899999999999998744433433 2357789999999865 6777
Q ss_pred ecCCeEEEEecCCCc-c-------------------cccc-----------c---ccccceeeecCCCCCeeEEccCCce
Q 019258 291 SEDGILAVVEQGEEP-F-------------------ELLA-----------E---PCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 291 s~dg~i~~~~~~~~~-~-------------------~~~~-----------~---~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
+.|+.+.+++...+. . .+.. . ..+..++..+|..+-.++|+..+..
T Consensus 310 gHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 310 GHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred ecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 788777776654221 1 0000 0 1568889999877888999765543
Q ss_pred E
Q 019258 337 I 337 (343)
Q Consensus 337 i 337 (343)
-
T Consensus 390 ~ 390 (1202)
T KOG0292|consen 390 E 390 (1202)
T ss_pred e
Confidence 3
No 66
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.2e-26 Score=205.68 Aligned_cols=270 Identities=13% Similarity=0.150 Sum_probs=211.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeE-EEcc--CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISS-LSTS--HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~-v~~~--~~~~l~~~s~dg 92 (343)
.|...|..++..+ +..++++|.|++ +++|+-.++.........++.+-|.. ++|. +..+|++|+.|+
T Consensus 12 gH~~DVr~v~~~~-----~~~i~s~sRd~t-----~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 12 GHKSDVRAVAVTD-----GVCIISGSRDGT-----VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cCccchheeEecC-----CeEEeecCCCCc-----eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4666777777655 557899999976 55999866554433444456666665 7776 667799999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
++.+|.....+++... ++|+..|++++.. ...++|||.|.++++|....- .....+|.. .|+++...|.+.+
T Consensus 82 ~i~v~~~~~~~P~~~L---kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l---~~~l~gH~a-sVWAv~~l~e~~~ 154 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL---KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL---VYSLQGHTA-SVWAVASLPENTY 154 (745)
T ss_pred eEEEEecCCCCchhhh---hccccceeeeecCCcCceEecccccceEEecchhh---hcccCCcch-heeeeeecCCCcE
Confidence 9999999866665544 4799999999987 555999999999999987652 333677777 8999999997799
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+||+.|++|++|.- ++.+.+|.+|. +.|..+++-|+.. |++++.||.|++||+. ++.....
T Consensus 155 vTgsaDKtIklWk~-----~~~l~tf~gHt-------D~VRgL~vl~~~~--flScsNDg~Ir~w~~~-ge~l~~~---- 215 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG-----GTLLKTFSGHT-------DCVRGLAVLDDSH--FLSCSNDGSIRLWDLD-GEVLLEM---- 215 (745)
T ss_pred EeccCcceeeeccC-----Cchhhhhccch-------hheeeeEEecCCC--eEeecCCceEEEEecc-Cceeeee----
Confidence 99999999999975 56777888877 8899999999753 5799999999999994 3444443
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccccc-ccceeeecCCCCCeeEE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPC-AINSFDIDPQNPSDVIC 330 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~-~i~s~~~~~~~~~~l~~ 330 (343)
.+|+.-|+++...+.+. .+++|++|+++++|+..+-. ..+..|. +|.+..+-+ + ..+++
T Consensus 216 -------~ghtn~vYsis~~~~~~----------~Ivs~gEDrtlriW~~~e~~-q~I~lPttsiWsa~~L~-N-gDIvv 275 (745)
T KOG0301|consen 216 -------HGHTNFVYSISMALSDG----------LIVSTGEDRTLRIWKKDECV-QVITLPTTSIWSAKVLL-N-GDIVV 275 (745)
T ss_pred -------eccceEEEEEEecCCCC----------eEEEecCCceEEEeecCceE-EEEecCccceEEEEEee-C-CCEEE
Confidence 57999999999665555 79999999999999998433 3344444 788888876 3 67888
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
|++||.||||+
T Consensus 276 g~SDG~VrVfT 286 (745)
T KOG0301|consen 276 GGSDGRVRVFT 286 (745)
T ss_pred eccCceEEEEE
Confidence 88999999996
No 67
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.4e-27 Score=185.60 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=187.8
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|+..|.++... .+.+|+++++|++|+||.++++..........+|.+||..+.|- |..|++|+.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3566667766655 68999999999999999998655444455556899999999997 899999999999999998
Q ss_pred CCCceEEEEE--cCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEE
Q 019258 143 IGGGEFKRVY--DGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+++ -.+.. ..|.. .|++++|.| +-.|+.++.||.|.+.+.+.++ +-.... ...|. --+++++|
T Consensus 88 ~~g~-w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~-------~GvnsVsw 157 (299)
T KOG1332|consen 88 ENGR-WTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHE-------IGVNSVSW 157 (299)
T ss_pred CCCc-hhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccc-------cccceeee
Confidence 8863 32222 23444 799999998 6678899999999999998821 122222 33333 45899999
Q ss_pred cCC---C----------CeEEEEEecCCcEEEEEccCCceeee-eecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 217 HPS---R----------KHTCLAGGSSGTVFAWDLRWQQQSIV-LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 217 ~p~---~----------~~~~~sg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
.|. | ...|++|+.|..|+||+....+-... .+ .+|.+.|.+++|.|.......
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l----------~~H~dwVRDVAwaP~~gl~~s--- 224 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL----------EGHKDWVRDVAWAPSVGLPKS--- 224 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh----------hhcchhhhhhhhccccCCCce---
Confidence 986 2 13479999999999999877422111 13 689999999999998643222
Q ss_pred CccceEEEecCCeEEEEecCCCc----cccccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEP----FELLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~----~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++||.||++.+|....+. .+++.+ +.++.++.|+. .|..|+.++.+..+++|+
T Consensus 225 ---~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 225 ---TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ---eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEE
Confidence 79999999999999876432 344444 67899999998 679999999999999997
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.2e-26 Score=208.75 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=215.2
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
..+.+..|. ..++++++.|+. |.+|+.... ..... ..+|.+.|.+++|. .+++|++|+.|.++++
T Consensus 209 ~~~~~~q~~------~~~~~~~s~~~t-----l~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 209 HVVLCLQLH------DGFFKSGSDDST-----LHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred chhhhheee------cCeEEecCCCce-----eEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 344444544 456888988865 679998442 12233 46899999999999 6899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF 176 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~ 176 (343)
||...++...... +|...|.++......+++|+.|.+|++|++.++ ....++.+|.. .|.++..+ .+.+++|++
T Consensus 276 Wd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~-~V~~v~~~-~~~lvsgs~ 349 (537)
T KOG0274|consen 276 WDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTG-PVNCVQLD-EPLLVSGSY 349 (537)
T ss_pred EecCCCcEEEEec---CCCceEEEEEccCceEeeccCCceEEEEeccCc-ceEEEeccccc-cEEEEEec-CCEEEEEec
Confidence 9998877766654 699999999988889999999999999999998 46777766666 89999988 789999999
Q ss_pred CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 177 GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
|++|++||.++ ++++..+.+|. .+|.++.+.+. ..+++|+.|++|++||+++.......+
T Consensus 350 d~~v~VW~~~~---~~cl~sl~gH~-------~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl-------- 409 (537)
T KOG0274|consen 350 DGTVKVWDPRT---GKCLKSLSGHT-------GRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL-------- 409 (537)
T ss_pred CceEEEEEhhh---ceeeeeecCCc-------ceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh--------
Confidence 99999999999 89999999877 88999988874 457899999999999999863333333
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc--ccccceeeecCCCCCeeEEccC
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE--PCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
..|.+-+..+.+.. . .|++++.||+|++||.... ....+.. ...|.++.... ..++|+++
T Consensus 410 --~~h~~~v~~l~~~~--~----------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~---~~il~s~~ 472 (537)
T KOG0274|consen 410 --QGHTSLVSSLLLRD--N----------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGK---EEILCSSD 472 (537)
T ss_pred --cCCccccccccccc--c----------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecCc---ceEEEEec
Confidence 57888887777753 3 7999999999999986532 3333333 36777777762 69999999
Q ss_pred CceEEEEeC
Q 019258 334 WESIAIVSR 342 (343)
Q Consensus 334 ~~~i~~~~~ 342 (343)
++.+++|+-
T Consensus 473 ~~~~~l~dl 481 (537)
T KOG0274|consen 473 DGSVKLWDL 481 (537)
T ss_pred CCeeEEEec
Confidence 999999974
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-25 Score=179.10 Aligned_cols=243 Identities=16% Similarity=0.147 Sum_probs=197.9
Q ss_pred CCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEE
Q 019258 64 PHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLV 140 (343)
Q Consensus 64 ~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~w 140 (343)
++...+|+-+++.++|. ++++|++++.|.+..||-..+++.+-.. .+|.+.|.+++.+ .+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty---~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY---DGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee---cCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 34556799999999999 9999999999999999987666655444 3799999999988 8899999999999999
Q ss_pred ECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccC----CCCCeeEEecccCCCCCcccC
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAG----SGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~ 210 (343)
|+++++ +...+.... +|..+.|++ +++++...+ .+.|.++|++... ..+|...+..+. ..
T Consensus 80 Dv~tGk-~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-------sk 149 (327)
T KOG0643|consen 80 DVETGK-QLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-------SK 149 (327)
T ss_pred EcCCCc-EEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-------cc
Confidence 999996 454544444 699999999 665555533 5679999998411 245566666554 67
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
++.+-|.|.+..| ++|.+||.|.+||++++.+.+... +.|...|+.|+++|+.. +++++
T Consensus 150 it~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~~v~s~----------~~h~~~Ind~q~s~d~T----------~FiT~ 208 (327)
T KOG0643|consen 150 ITSALWGPLGETI-IAGHEDGSISIYDARTGKELVDSD----------EEHSSKINDLQFSRDRT----------YFITG 208 (327)
T ss_pred eeeeeecccCCEE-EEecCCCcEEEEEcccCceeeech----------hhhccccccccccCCcc----------eEEec
Confidence 9999999998754 689999999999999976666554 67899999999999987 89999
Q ss_pred ecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.|.+-++||.. .+....+....|||+.+++| ..+.||+|+-.++..+-+
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP-~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNTAAISP-LLDHVILGGGQEAMDVTT 259 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccceeccc-ccceEEecCCceeeeeee
Confidence 999999999974 44556666789999999999 559999999888877643
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=171.88 Aligned_cols=295 Identities=17% Similarity=0.207 Sum_probs=211.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC------------C-CCCCCCccCCCCCCeeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL------------P-ASLTPHSQWTPPTRISSL 77 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~------------~-~~~~~~~~~~~~~~v~~v 77 (343)
.+.....++.|.+|+|+| .+.+.+.||.-++ +++-..+. . +...+...-.|.+.|.|.
T Consensus 25 ~i~~l~dsqairav~fhp----~g~lyavgsnskt-----~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHP----AGGLYAVGSNSKT-----FRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred EEEEecchhheeeEEecC----CCceEEeccCCce-----EEEEccccccCcccccccccCCCeEEeeeccccCccEEEE
Confidence 455566778999999999 7888899886543 44443321 0 111223334578999999
Q ss_pred Ecc-CCCeEEEEcCCCcEEEEEccCceeeee--eccCCccccCeEEEEec------CCEEEEEe-CCCcEEEEECCCCce
Q 019258 78 STS-HQSLVAASTLSGSLHVLSSAMQVLLSV--DENSGFHVGPISGVDLT------GSECVSVG-EDGRVNLVSVIGGGE 147 (343)
Q Consensus 78 ~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~--~~~~~~h~~~v~~~~~~------~~~~~s~s-~dg~v~~wd~~~~~~ 147 (343)
+|+ .+.++++|+.|.+|++..++....-.. .-....|.+.|..++|. +..+++++ .|..|.+-|..++ +
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-Q 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-C
Confidence 999 999999999999999998863211100 01123599999999996 44566554 5666777777777 4
Q ss_pred EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...-+.+|.. .|.++---.+-.|++|+.|.+|++||+|- ...+..+.......+..+..|.+++..|.|+ ++++|
T Consensus 175 ~~~a~sghtg-hilalyswn~~m~~sgsqdktirfwdlrv---~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg 249 (350)
T KOG0641|consen 175 GFHALSGHTG-HILALYSWNGAMFASGSQDKTIRFWDLRV---NSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG 249 (350)
T ss_pred cceeecCCcc-cEEEEEEecCcEEEccCCCceEEEEeeec---cceeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence 6666677776 66665322267899999999999999998 6666665433222344447899999999986 67899
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-c
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-F 306 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~ 306 (343)
-.|....+||+|.++..+.+ ..|...|.+|.|+|... ++++||.|..|++-+.+... .
T Consensus 250 ~~dssc~lydirg~r~iq~f-----------~phsadir~vrfsp~a~----------yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRF-----------HPHSADIRCVRFSPGAH----------YLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred cCCCceEEEEeeCCceeeee-----------CCCccceeEEEeCCCce----------EEEEecccceEEEeecccchhh
Confidence 99999999999986554444 57999999999999866 89999999999998865322 1
Q ss_pred c----cccc-ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 307 E----LLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 307 ~----~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+ +..+ ...+-.+-|+|++ --.++.+.|....+|.-
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEecc
Confidence 1 1222 3567788999965 55667777888888853
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=202.85 Aligned_cols=249 Identities=13% Similarity=0.150 Sum_probs=198.1
Q ss_pred CccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEE
Q 019258 10 PQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVA 86 (343)
Q Consensus 10 ~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~ 86 (343)
.-++.| .|.+.|..++|++ .+..|+|+|+|.. |++||++. ..++..+.....++|+.|. +.+.++
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~-----lKlwDtET---G~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRF-----LKLWDTET---GQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred ceehhhhcchhhhhhhhccc----cCCeeeeeeccee-----eeeecccc---ceEEEEEecCCCceeeecCCCCCcEEE
Confidence 344555 5889999999999 8999999999975 77999955 5556666777789999999 448999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
+|.+|+.|+.||++.++-++ ....|-+.|..+.|. +..|++.++|+++++|+.+.+. +.........-...++.
T Consensus 317 ~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLT 392 (503)
T ss_pred EecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCccee
Confidence 99999999999999665332 223588999999998 9999999999999999998874 44333333333688899
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
.+| .+.+++-+.|+.|.++.+...-....-..+++|. ..+.-..+.|+|+|.. +++|..||.+.+||.++ ..
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-----vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt-~k 465 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-----VAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKT-TK 465 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhccee-----ccCceeeEEEcCCCCe-EEeecCCccEEEeechh-hh
Confidence 999 8888888999999999876511112223356554 2267888999999975 57999999999999988 44
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
....+ ++|.+.+..+.|||..+. .+++|+.||.|++|+
T Consensus 466 l~~~l----------kah~~~ci~v~wHP~e~S---------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKL----------KAHDQPCIGVDWHPVEPS---------KVATCGWDGLIKIWD 503 (503)
T ss_pred hhhcc----------ccCCcceEEEEecCCCcc---------eeEecccCceeEecC
Confidence 44444 689999999999999998 999999999999996
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=1.7e-24 Score=189.18 Aligned_cols=280 Identities=14% Similarity=0.187 Sum_probs=214.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|++.|+++.+.| .++=+++|||.|+.+ .+++= ++..-....-.|..-|+|+.|+ ++.+++++++||++
T Consensus 145 GhSr~ins~~~Kp---sRPfRi~T~sdDn~v-----~ffeG--PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 145 GHSRRINSVDFKP---SRPFRIATGSDDNTV-----AFFEG--PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred ccceeEeeeeccC---CCceEEEeccCCCeE-----EEeeC--CCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 5889999999999 678889999999752 24443 3322223334577789999999 99999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEEEeCCCC
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCVKWASPT 169 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 169 (343)
.+||=.+++.+-..+...+|++.|.+++|+ +.+|+++|.|.++++||+.+.+ +.+.+..... ..+-|+ |- ..
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~l-Wq-kd 291 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCL-WQ-KD 291 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEE-Ee-CC
Confidence 999988777666666566899999999999 8999999999999999999985 4444333221 123333 33 77
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.|++.+.+|+|.+++... ..++..+.+|. ..|+++..+|++.+ +.+|+.||.|.-||...+..-...-
T Consensus 292 ~lItVSl~G~in~ln~~d---~~~~~~i~GHn-------K~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g- 359 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSD---PSVLKVISGHN-------KSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAG- 359 (603)
T ss_pred eEEEEEcCcEEEEecccC---CChhheecccc-------cceeEEEEcCCCCE-EEeeccCceEEEEecCCcccccccc-
Confidence 899999999999999988 66888888876 77999999999855 5799999999999998754322221
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-------------Ccc----------
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-------------EPF---------- 306 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-------------~~~---------- 306 (343)
+.|...|.+++-+..+ .+++++.|.+|++.+... .+.
T Consensus 360 ---------~~h~nqI~~~~~~~~~-----------~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 360 ---------KGHTNQIKGMAASESG-----------ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred ---------ccccceEEEEeecCCC-----------cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 5699999999988543 589999999999874311 111
Q ss_pred ---------ccccc---------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 ---------ELLAE---------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 ---------~~~~~---------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++.. .-...+++++| +++.++.|++|+.+++++
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEE
Confidence 11110 02356788998 679999999999999986
No 73
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=191.66 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=190.4
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-------------CCCCCC-ccCCCCCCeeE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-------------ASLTPH-SQWTPPTRISS 76 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-------------~~~~~~-~~~~~~~~v~~ 76 (343)
....++|-..|+-++-.| .++-.++++|-.. + ++.+|++... ....++ +.-.|.+.=++
T Consensus 144 ~~~~i~h~g~~NRvr~~~----~~~~~~~aswse~-G--~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSR----LGNEVLCASWSEN-G--RVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred cccccccccccceeeecc----cCCcceeeeeccc-C--cEEEEEchhhhhhhcCccccccccccCceEEecccCcccee
Confidence 455667888888888888 5555667777533 3 3779998321 112222 22346778889
Q ss_pred EEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce-EEE
Q 019258 77 LSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE-FKR 150 (343)
Q Consensus 77 v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~-~~~ 150 (343)
++|+ ....|++|..-+.|++|...++.-..-.....+|+..|-.++|+ ...|+|||.||+|++||++.+.+ .-.
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 9999 56778898888999999987543222222233699999999998 78999999999999999998622 222
Q ss_pred EEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 151 VYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
....|.+ -|..++|+. ...|++|++||+++|||+|+-..++|+.+|+.|. .+|++|.|+|.....|++++.
T Consensus 297 ~~kAh~s-DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-------~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 297 STKAHNS-DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-------APITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred EeeccCC-ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-------CCeeEEEeccccCceEEeccC
Confidence 2245555 799999999 5689999999999999999866678899999776 899999999999889999999
Q ss_pred CCcEEEEEccCCc---------------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 230 SGTVFAWDLRWQQ---------------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 230 dg~v~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
|.+|.+||+.... .|..++. ++++ ...+..|+||++.+. .+++.+.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-------VHqG-Qke~KevhWH~QiPG---------~lvsTa~dG 431 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-------VHQG-QKEVKEVHWHRQIPG---------LLVSTAIDG 431 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEE-------Eecc-hhHhhhheeccCCCC---------eEEEecccc
Confidence 9999999984321 1222331 1222 467999999999997 899999998
Q ss_pred e
Q 019258 295 I 295 (343)
Q Consensus 295 ~ 295 (343)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 5
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=4.6e-25 Score=188.55 Aligned_cols=277 Identities=17% Similarity=0.180 Sum_probs=213.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
.-|.++.-+| ....++||+.|.+ +-++|.+.+... ...-+|.-.|+++.|+ +.+..++++.|-.|+||
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~-----av~~d~~s~q~l--~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKT-----AVLFDKPSNQIL--ATLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCc-----eEEEecchhhhh--hhccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 3577777777 3677899999965 447777553322 2234678899999999 78889999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~ 174 (343)
......+.... ..|.++|+.+..+ +++|++++.||+..+.|++++..............+++.+|+| +..|.+|
T Consensus 289 s~~~~s~~~~~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 289 SVPLSSEPTSS---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred ccccccCcccc---ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 98744433322 3699999999998 9999999999999999999986544444323334799999999 8888899
Q ss_pred eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCc
Q 019258 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
..|+.|++||+.. +..+..|.+|. ++|..|+|+.+|. .++++++|+.|++||+|+......+.
T Consensus 366 t~d~~vkiwdlks---~~~~a~Fpght-------~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~------ 428 (506)
T KOG0289|consen 366 TPDGVVKIWDLKS---QTNVAKFPGHT-------GPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQ------ 428 (506)
T ss_pred CCCceEEEEEcCC---ccccccCCCCC-------CceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceee------
Confidence 9999999999998 66788888877 8999999999985 46899999999999999976555554
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC----CcccccccccccceeeecCCCCCeeEE
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE----EPFELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~----~~~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
.....++.++.|.+.+. +|+.++.|=.|++++... +..++..+....+.+.|.. .-+++++
T Consensus 429 ----l~~~~~v~s~~fD~SGt----------~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s 493 (506)
T KOG0289|consen 429 ----LDEKKEVNSLSFDQSGT----------YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLAS 493 (506)
T ss_pred ----ccccccceeEEEcCCCC----------eEEeecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEee
Confidence 22334799999999887 788889998898888433 2323222234677777775 4488888
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
++-+..+.++.
T Consensus 494 ~smd~~l~~~a 504 (506)
T KOG0289|consen 494 TSMDAILRLYA 504 (506)
T ss_pred ccchhheEEee
Confidence 88777666664
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.4e-24 Score=187.95 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=184.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...+..+.|.| +++++++++.|+. +.+|++...... .....|...|.++.|. ++.++++++.+|.+
T Consensus 49 ~~~~~i~~~~~~~----~~~~l~~~~~~~~-----i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 117 (289)
T cd00200 49 GHTGPVRDVAASA----DGTYLASGSSDKT-----IRLWDLETGECV--RTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117 (289)
T ss_pred cCCcceeEEEECC----CCCEEEEEcCCCe-----EEEEEcCcccce--EEEeccCCcEEEEEEcCCCCEEEEecCCCeE
Confidence 4567788999999 6789999998865 779999653222 2223566789999999 55677777779999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+...... .|...+.++.++ +..+++++.|+.|++||+++++ ....+..+.. .+.++.|++ +..+
T Consensus 118 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~l 192 (289)
T cd00200 118 KVWDVETGKCLTTLR---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTG-EVNSVAFSPDGEKL 192 (289)
T ss_pred EEEECCCcEEEEEec---cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCcc-ccceEEECCCcCEE
Confidence 999998554443332 588899999999 5666666779999999998764 4444455554 799999999 6689
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. .+++..+..+. ..+.+++|+|++ .++++++.||.|++||++... +....
T Consensus 193 ~~~~~~~~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~-~~~~~--- 257 (289)
T cd00200 193 LSSSSDGTIKLWDLST---GKCLGTLRGHE-------NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE-CVQTL--- 257 (289)
T ss_pred EEecCCCcEEEEECCC---CceecchhhcC-------CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce-eEEEc---
Confidence 9999999999999987 56666665443 679999999984 566777779999999998743 33333
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..|...|.+++|+|++. .+++++.||.|++|+
T Consensus 258 -------~~~~~~i~~~~~~~~~~----------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 -------SGHTNSVTSLAWSPDGK----------RLASGSADGTIRIWD 289 (289)
T ss_pred -------cccCCcEEEEEECCCCC----------EEEEecCCCeEEecC
Confidence 46788999999999876 799999999999996
No 76
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.95 E-value=6.5e-25 Score=178.95 Aligned_cols=301 Identities=11% Similarity=0.111 Sum_probs=222.4
Q ss_pred CCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc------
Q 019258 8 TPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS------ 80 (343)
Q Consensus 8 ~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~------ 80 (343)
+...+..|..+..+.++.|+-. .....+++.||.-.+ ..-++.+..+.++ .+......++|+-+++.+.|.
T Consensus 34 r~~eiy~Y~ap~~lya~~Ws~~-~~~~~rla~gS~~Ee-~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 34 RRKEIYTYNAPWPLYAMNWSVR-PDKKFRLAVGSFIEE-YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ccceEEEecCCCceeeeccccC-CCcceeEEEeeeccc-cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence 3446788888889999999974 245678899987533 2234556666432 234445568999999999998
Q ss_pred CCCeEEEEcCCCcEEEEEccCc-eeeee-----eccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc--eEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQ-VLLSV-----DENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG--EFK 149 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~-~~~~~-----~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~--~~~ 149 (343)
.+++|++ .+..+|+|++... ..+.. ......+.+++++++|+ .+++.++|-|-+..+||++++. .+.
T Consensus 112 ~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 112 YPDLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred Ccchhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 2234443 3447999999732 22211 11223466799999999 7889999999999999999852 245
Q ss_pred EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 150 RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
..+-.|+. .|..++|.. .+.|++.|.||.+|+||+|. ..+.-.-++... ...+.-.++|+++.++++|+-
T Consensus 190 TQLIAHDK-EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~--leHSTIIYE~p~-----~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 190 TQLIAHDK-EVYDIAFLKGSRDVFASVGADGSVRMFDLRS--LEHSTIIYEDPS-----PSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eEEEecCc-ceeEEEeccCccceEEEecCCCcEEEEEecc--cccceEEecCCC-----CCCcceeeccCcCCchHHhhh
Confidence 55667777 899999998 77899999999999999998 222222233221 016789999999988887774
Q ss_pred ec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 228 GS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 228 ~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
.. ...|.+.|+|.+..|+..+ ..|.+.|++++|.|+... .+.+|++|....+||....+.
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L----------~~H~a~VNgIaWaPhS~~---------hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARL----------RNHQASVNGIAWAPHSSS---------HICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hcCCceEEEEEecCCCcceehh----------hcCcccccceEecCCCCc---------eeeecCCcceEEEEecccccc
Confidence 44 4569999999999999888 789999999999999998 999999999999999765544
Q ss_pred cc-------cccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 307 EL-------LAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 307 ~~-------~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+- +....-||.+.|++..++.+.+...+ ++.++
T Consensus 323 ~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 323 ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred cCCCCchhhhhccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 22 22346799999997777888877633 55554
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=203.70 Aligned_cols=249 Identities=17% Similarity=0.136 Sum_probs=193.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--------------------------------CC---
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--------------------------------PA--- 60 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--------------------------------~~--- 60 (343)
.|...|-++.|+| ++++||+|+.|+- |+||.+-+ ..
T Consensus 265 ah~gaIw~mKFS~----DGKyLAsaGeD~v-----irVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH----DGKYLASAGEDGV-----IRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred ccCCcEEEEEeCC----CCceeeecCCCce-----EEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4777899999999 9999999999964 77998744 00
Q ss_pred ----------------------CCCCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccC
Q 019258 61 ----------------------SLTPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP 117 (343)
Q Consensus 61 ----------------------~~~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~ 117 (343)
..++++. .+|.++|.++.|+..++|++++.|.+|+||++...+.+.+. .|..-
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F----~Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF----SHNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----ecCCe
Confidence 0111111 35788999999999999999999999999999977777665 49999
Q ss_pred eEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC
Q 019258 118 ISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP 193 (343)
Q Consensus 118 v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~ 193 (343)
|+|++|+ .++|++|+-||.|+||++... ++....+.++ -|++++|.| ++..+.|+.+|.+++|+.+. .+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~Dl~~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~---lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDK-KVVDWNDLRD--LITAVCYSPDGKGAVIGTFNGYCRFYDTEG---LKL 485 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcC-eeEeehhhhh--hheeEEeccCCceEEEEEeccEEEEEEccC---CeE
Confidence 9999999 899999999999999999887 4666666676 499999999 88999999999999999977 444
Q ss_pred eeEEe--cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 194 VLQFK--GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 194 ~~~~~--~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
...+. .+.. +......|+.+.|.|....-+++.+.|-.|+|+|+|.......+.+.. -...-....|.
T Consensus 486 ~~~~~I~~~~~-Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~---------n~~SQ~~Asfs 555 (712)
T KOG0283|consen 486 VSDFHIRLHNK-KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR---------NTSSQISASFS 555 (712)
T ss_pred EEeeeEeeccC-ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc---------cCCcceeeeEc
Confidence 43322 2221 222334699999999877655667999999999997744443433211 11233566788
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.++. +++++|+|..|++|+...
T Consensus 556 ~Dgk----------~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 556 SDGK----------HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCC----------EEEEeecCceEEEEeCCC
Confidence 8877 899999999999999744
No 78
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-26 Score=209.51 Aligned_cols=239 Identities=14% Similarity=0.202 Sum_probs=193.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc--CCCeEEEEcCCCcEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS--HQSLVAASTLSGSLHV 96 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v 96 (343)
.+..|+|.. -+.++++|++..+. |-+||+......+++.. -.|.-.++++.|+ ++.+|++|+.||.|++
T Consensus 89 S~~DVkW~~---~~~NlIAT~s~nG~-----i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 89 SAADVKWGQ---LYSNLIATCSTNGV-----ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred ehhhccccc---chhhhheeecCCCc-----EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 467789986 57899999998765 55999966322233333 3588899999999 8899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||++......... .....|.+|.|+ +.+|+++.+.|.|++||++...++...+..|.+ .|.|+.|+| ...|+
T Consensus 161 ~DlR~~~S~~t~~---~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 161 WDLRSKKSKSTFR---SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLA 236 (839)
T ss_pred Eeeeccccccccc---ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceee
Confidence 9998544333332 355689999999 889999999999999999997667666677777 999999999 88999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|||.|+.|+|||... +...+..++... .++.+|.|-|..++.|++++ .|-.|++||+|.+--|....
T Consensus 237 TGGRDK~vkiWd~t~-~~~~~~~tInTi--------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~-- 305 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTD-SRAKPKHTINTI--------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF-- 305 (839)
T ss_pred ecCCCccEEEEeccC-CCccceeEEeec--------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--
Confidence 999999999999975 122333344322 78999999999988888877 47789999999988888877
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
..|...+..++|...... .+++||.||++..
T Consensus 306 --------~eH~~~vt~i~W~~~d~~---------~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 306 --------LEHTDSVTGIAWDSGDRI---------NLWSCSKDGTVLQ 336 (839)
T ss_pred --------eccCccccceeccCCCce---------eeEeecCccHHHH
Confidence 779999999999876665 8999999999854
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.2e-26 Score=187.55 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=222.7
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCC-----ccCCCCCCeeEEEcc-CCCeE
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPH-----SQWTPPTRISSLSTS-HQSLV 85 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~-----~~~~~~~~v~~v~~~-~~~~l 85 (343)
.+|.+..-+.+.+|+| ++.+|++||-|+- |++|++..... ..+. ..+-+..+|.|+.|+ +...|
T Consensus 208 IKFg~KSh~EcA~FSP----DgqyLvsgSvDGF-----iEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP----DGQYLVSGSVDGF-----IEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred eecccccchhheeeCC----CCceEeeccccce-----eeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 3456667899999999 9999999999976 67999844211 1111 123467889999999 88999
Q ss_pred EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 86 AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
++|+.||.|++|.+..++.+. ++.++|...|+++.|+ +..+++++.|.++++.-+.+++ +..-+.+|.+ .|+..
T Consensus 279 AsGsqDGkIKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsS-yvn~a 354 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSS-YVNEA 354 (508)
T ss_pred hccCcCCcEEEEEEecchHHH--HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccc-cccce
Confidence 999999999999999776553 4456799999999999 8899999999999999999995 5666677777 89999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
.|.+ ++.+++++.||+|++|+..+ .+++.+|+.... ..+|+++-.-|..+.-++.+....+|++-++.. +
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Kt---teC~~Tfk~~~~-----d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q 425 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKT---TECLSTFKPLGT-----DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q 425 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcc---hhhhhhccCCCC-----cccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e
Confidence 9999 99999999999999999999 888888875541 167999999998877778889999999999863 3
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~ 320 (343)
....+. .+ ....+..-+...+|.+. +++..++|+.++-+...... ..+.-+...+-.+.-
T Consensus 426 vVrsfs-SG-------kREgGdFi~~~lSpkGe----------wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 426 VVRSFS-SG-------KREGGDFINAILSPKGE----------WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred EEeeec-cC-------CccCCceEEEEecCCCc----------EEEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 333333 22 22335566677899877 79999999999987754332 233333456777888
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||.. +.+++=++|+-+.+|+
T Consensus 488 HPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred Cccc-chhhhhcccchhhhcC
Confidence 8842 5556666778888875
No 80
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-26 Score=218.24 Aligned_cols=294 Identities=18% Similarity=0.250 Sum_probs=223.7
Q ss_pred cceeeEEecCCCCCCCCeEEEEee----cCCC-CCCceeeeeCCC---CCCCCCCccCCCCCCeeEEEcc-CC----CeE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIY----DTDA-DSPSLETHSISL---PASLTPHSQWTPPTRISSLSTS-HQ----SLV 85 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~----D~~~-~~~~l~~w~~~~---~~~~~~~~~~~~~~~v~~v~~~-~~----~~l 85 (343)
.+-..++|+|. ...++++|.. |..- -+.+++||.+.. ....++..++.-..+.+.++|. .+ .++
T Consensus 7 ~Rta~~awSp~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 7 SRTATFAWSPA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred cccceEEecCC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCcccee
Confidence 45678999993 2446666653 3311 134577777732 1224567777777889999998 22 358
Q ss_pred EEEcCCCcEEEEEccC---ceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 86 AASTLSGSLHVLSSAM---QVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~---~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+.|..||.|-+|+... +....+......|.+.|..++|+ ++.+++|+.||.|.+||+.+...+...-.......
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 8888999999999873 33444444455799999999999 77999999999999999987543332211111125
Q ss_pred eEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC---cEE
Q 019258 160 FNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG---TVF 234 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg---~v~ 234 (343)
|.+++|+. .+.|++++.+|++.|||+|. .+++..+..+.+ + ..+..++|||+....++++++|. .|.
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~---~~pii~ls~~~~-~----~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRK---KKPIIKLSDTPG-R----MHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccC---CCcccccccCCC-c----cceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 99999999 88899999999999999999 677777764432 1 44889999999876666777654 499
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccccc
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAEP 312 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~~ 312 (343)
+||+|....|...+ +.|+..|.+|.|++.++. +|+||+.|+.|..|+... -.-++-...
T Consensus 236 lWDlR~assP~k~~----------~~H~~GilslsWc~~D~~---------lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 236 LWDLRFASSPLKIL----------EGHQRGILSLSWCPQDPR---------LLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred eecccccCCchhhh----------cccccceeeeccCCCCch---------hhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 99999988888887 789999999999999987 999999999999999754 223333334
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
..+..+-|.|.+...+.+++-+++|.|++.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeee
Confidence 568888899988889999999999999864
No 81
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.8e-24 Score=196.95 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=167.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC----CCCC-ccCCCCCCeeEEEcc-C-CCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS----LTPH-SQWTPPTRISSLSTS-H-QSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~----~~~~-~~~~~~~~v~~v~~~-~-~~~l~~~ 88 (343)
.|...|.+++|+| .++++|++||.|+. |++|+++.... ..++ ....|...|.+++|+ . +++|+++
T Consensus 73 GH~~~V~~v~fsP---~d~~~LaSgS~Dgt-----IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 73 GQEGPIIDVAFNP---FDPQKLFTASEDGT-----IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CCCCCEEEEEEcC---CCCCEEEEEeCCCE-----EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 5888999999999 45679999999975 67999965321 1222 234588899999999 3 4789999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.|+.|+|||+...+.+... ..|...|.+++|+ +..|++++.|++|++||+++++ ....+..|.......+.|.
T Consensus 145 s~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred eCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEc
Confidence 99999999999866544333 3588999999998 8899999999999999999985 4444455554234566787
Q ss_pred C-CCEEEEEe----CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 167 S-PTEFVTGG----FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~-~~~l~t~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+ .+.+++++ .|++|++||++. ...++....... . ..+....|+|++..++++|..||.|++||++.+
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~--~~~p~~~~~~d~--~----~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRK--MASPYSTVDLDQ--S----SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCC--CCCceeEeccCC--C----CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 7 66777765 479999999997 334444333222 1 346667788987655544446999999999985
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
....... ..+..++..++|.|...
T Consensus 293 ~~~~~~~----------~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 293 RLTFCSS----------YSSVEPHKGLCMMPKWS 316 (493)
T ss_pred ceEEEee----------ccCCCCCcceEeccccc
Confidence 5333322 23456778888888643
No 82
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.9e-25 Score=192.21 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=220.2
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC---CCCCeeEEEcc-CCCeE
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT---PPTRISSLSTS-HQSLV 85 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~---~~~~v~~v~~~-~~~~l 85 (343)
++++...|++-|-++..+. ..+++.||+.. .+++||++......++..++ ....|.++... +++.|
T Consensus 411 rq~~tL~HGEvVcAvtIS~----~trhVyTgGkg------cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISN----PTRHVYTGGKG------CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred HhhhhhccCcEEEEEEecC----CcceeEecCCC------eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE
Confidence 3788889999999999999 77888888654 58899997655444555544 34568888887 99999
Q ss_pred EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 86 AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
++|+.-.++.|||+..... .+......-.-.|.+++.+ .+..++|..||.|.+||+.+.. +.+.+.+|.. .+.|+
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtD-GascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD-GASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCC-CceeE
Confidence 9999999999999984322 1111111122357778887 7788899999999999999985 6666677776 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
..+. +..|-||+.|++||.||+|. +..+.+.... ..|+++.++|++.++ +.|-+++.+.+-....++
T Consensus 558 dis~dGtklWTGGlDntvRcWDlre---grqlqqhdF~--------SQIfSLg~cP~~dWl-avGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLRE---GRQLQQHDFS--------SQIFSLGYCPTGDWL-AVGMENSNVEVLHTSKPE 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhh---hhhhhhhhhh--------hhheecccCCCccce-eeecccCcEEEEecCCcc
Confidence 9998 88999999999999999999 6655442211 679999999999875 789999999998887655
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-ccccccceeeec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-AEPCAINSFDID 321 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~~~~~i~s~~~~ 321 (343)
+... ..|+..|.+|.|.+.+. ++++.+.|+.+-.|+.......+. .+..+|.+.|++
T Consensus 626 kyql------------hlheScVLSlKFa~cGk----------wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 626 KYQL------------HLHESCVLSLKFAYCGK----------WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred ceee------------cccccEEEEEEecccCc----------eeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 4333 34999999999999988 899999999999999865543333 446899999999
Q ss_pred CCCCCeeEEccCCceEEEE
Q 019258 322 PQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~ 340 (343)
-++ +++|.|+-+..-.+|
T Consensus 684 ~dd-kyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 684 FDD-KYIVTGSGDKKATVY 701 (705)
T ss_pred cCc-eEEEecCCCcceEEE
Confidence 854 999999877544444
No 83
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=203.76 Aligned_cols=276 Identities=15% Similarity=0.141 Sum_probs=196.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCCccCC----CCCCeeEEEcc--CCCeEEEEcCCC
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPHSQWT----PPTRISSLSTS--HQSLVAASTLSG 92 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~~~~~----~~~~v~~v~~~--~~~~l~~~s~dg 92 (343)
++++|.-.+ +..-++.++.- .++++.++..... ++.-.+. ..-.+.+|+|. ..++|++++.+|
T Consensus 41 ~~nAIs~nr----~~~qiv~AGrs------~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNR----DINQIVVAGRS------LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecC----CcceeEEeccc------ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 455555556 44445555432 3667777543221 1111111 11246788888 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.|.+||+.....-........|...+++++|+ ..+++|||.||+|+.||++..+... .+.+... .|++++|+|
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-t~~~nSE-SiRDV~fsp~~ 188 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-TFRSNSE-SIRDVKFSPGY 188 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-cccccch-hhhceeeccCC
Confidence 99999998521111111234699999999999 7899999999999999999875333 3333333 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-eee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SIV 246 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~ 246 (343)
++.|+++.+.|.+++||+|+ +.++..++..|. ++|.|+.|||++ ..||+|+.|++|+|||+..++. +..
T Consensus 189 ~~~F~s~~dsG~lqlWDlRq--p~r~~~k~~AH~-------GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQ--PDRCEKKLTAHN-------GPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred CceEEEecCCceEEEeeccC--chhHHHHhhccc-------CceEEEeecCCC-ceeeecCCCccEEEEeccCCCcccee
Confidence 88999999999999999999 677777787776 999999999975 5679999999999999975432 323
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec--CCeEEEEecCCC--cccccc-cccccceeeec
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE--DGILAVVEQGEE--PFELLA-EPCAINSFDID 321 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~--dg~i~~~~~~~~--~~~~~~-~~~~i~s~~~~ 321 (343)
.. .-..+|..|+|-|..+. +|++|+. |-.|++||-... +.-.+. +...+..+.|.
T Consensus 259 tI-----------nTiapv~rVkWRP~~~~---------hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 259 TI-----------NTIAPVGRVKWRPARSY---------HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred EE-----------eecceeeeeeeccCccc---------hhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 22 13478999999999987 8999974 557999997543 333333 34567788887
Q ss_pred CCCCCeeEEccCCceE
Q 019258 322 PQNPSDVICSLEWESI 337 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i 337 (343)
..+...+.+.+.|+.+
T Consensus 319 ~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTV 334 (839)
T ss_pred CCCceeeEeecCccHH
Confidence 6455666666666554
No 84
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3e-24 Score=199.44 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=167.4
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee-ee----eeccCCccccCeEEEEe
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL-LS----VDENSGFHVGPISGVDL 123 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~-~~----~~~~~~~h~~~v~~~~~ 123 (343)
+++|+..... .......|.+.|.+++|+ ++.+|++|+.||.|+||++..... .. ......+|...|.++.|
T Consensus 56 I~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 56 IRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred EEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 5788875432 122334688999999999 368999999999999999974221 10 11122468999999999
Q ss_pred c--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 124 T--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 124 ~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+ +. .+++++.|++|++||++++..... +..+. .|.+++|++ +..|++++.|+.|++||+|+ +..+.++.+
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rs---g~~i~tl~g 207 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-INMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRK---QEIASSFHI 207 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcEEEE-EecCC--cEEEEEECCCCCEEEEEecCCEEEEEECCC---CcEEEEEec
Confidence 9 44 457999999999999998854333 33333 699999999 88888899999999999999 777777877
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecC----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSS----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|.+.... ..+....|++++..++ +++.| ++|++||++....++..... ..+.+.+ .-.|.++..
T Consensus 208 H~g~~~s--~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~l--------d~~~~~L-~p~~D~~tg 275 (568)
T PTZ00420 208 HDGGKNT--KNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSI--------DNASAPL-IPHYDESTG 275 (568)
T ss_pred ccCCcee--EEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEe--------cCCccce-EEeeeCCCC
Confidence 7631100 1233345567766554 54544 47999999976666665421 1122222 223444444
Q ss_pred CCcCCCCCccceEEEecCCeEEEEecCCCccccccc---ccccceeeecCC
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE---PCAINSFDIDPQ 323 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~---~~~i~s~~~~~~ 323 (343)
. .+++|+.|+.|++|+...+....+.+ ..|+.++.+.|+
T Consensus 276 ~---------l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 L---------IYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred C---------EEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 3 78899999999999986443322332 467888898883
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-24 Score=194.71 Aligned_cols=238 Identities=13% Similarity=0.181 Sum_probs=192.5
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEccCCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
.+.|++|.|+| ++.+|+.|..++. +.|||..+..... .... |.+.|.+++|. ...+.+|+.+|.|..
T Consensus 217 ~~~vtSv~ws~----~G~~LavG~~~g~-----v~iwD~~~~k~~~--~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 217 EELVTSVKWSP----DGSHLAVGTSDGT-----VQIWDVKEQKKTR--TLRGSHASRVGSLAWN-SSVLSSGSRDGKILN 284 (484)
T ss_pred CCceEEEEECC----CCCEEEEeecCCe-----EEEEehhhccccc--cccCCcCceeEEEecc-CceEEEecCCCcEEE
Confidence 68899999999 9999999998875 6799996533221 1223 78999999998 788999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~ 172 (343)
+|++..+.... ...+|...|+.+.|+ +.++++|+.|+.+.+||..... +...+..|.. .|.+++|+| .+.|+
T Consensus 285 ~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~a-AVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 285 HDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTA-AVKALAWCPWQSGLLA 360 (484)
T ss_pred EEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccce-eeeEeeeCCCccCceE
Confidence 99984433322 245799999999999 9999999999999999996653 4445555666 799999999 77888
Q ss_pred EEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeec
Q 019258 173 TGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 173 t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|+. |+.|++||... +..+..+... ..|+++.|++....++.+ |..+..|.||+..+. .+...+
T Consensus 361 sGGGs~D~~i~fwn~~~---g~~i~~vdtg--------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l- 427 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNT---GARIDSVDTG--------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL- 427 (484)
T ss_pred EcCCCcccEEEEEEcCC---CcEecccccC--------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-
Confidence 8876 99999999988 6666655422 679999999987666555 556788999999873 344444
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|...|..++++|++. .+++++.|.+|++|+...
T Consensus 428 ---------~gH~~RVl~la~SPdg~----------~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 428 ---------LGHTSRVLYLALSPDGE----------TIVTGAADETLRFWNLFD 462 (484)
T ss_pred ---------cCCcceeEEEEECCCCC----------EEEEecccCcEEeccccC
Confidence 68999999999999987 799999999999999754
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-23 Score=169.72 Aligned_cols=280 Identities=10% Similarity=0.053 Sum_probs=208.4
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+....|.++|+-|+++. ++++|.+++.|.... +|-.-+.+. +-...+|.+.|+++... +..+|++|+.
T Consensus 4 i~l~GHERplTqiKyN~----eGDLlFscaKD~~~~-----vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR----EGDLLFSCAKDSTPT-----VWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred cccccCccccceEEecC----CCcEEEEecCCCCce-----EEEecCCce--eeeecCCCceEEEEEecCCcceeeeccc
Confidence 44456889999999999 999999999997654 776632221 23345899999999998 8899999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-----CCCcEEEEECCCC------ceEEEEEcCCCc
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-----EDGRVNLVSVIGG------GEFKRVYDGNGL 157 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-----~dg~v~~wd~~~~------~~~~~~~~~~~~ 157 (343)
|.++++||+..+..+...+ -..+|..+.|+ +++++.+. ..+.|.++|++.. +.+...+..+++
T Consensus 73 D~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred cceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 9999999999877665543 23578999998 66655553 3478999999731 133444455555
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.++.+-|.| +..+++|..||.|..||.++ +..+.. ...|. ..|+.++++|+.. .|++|+.|.+-++
T Consensus 149 -kit~a~Wg~l~~~ii~Ghe~G~is~~da~~---g~~~v~s~~~h~-------~~Ind~q~s~d~T-~FiT~s~Dttakl 216 (327)
T KOG0643|consen 149 -KITSALWGPLGETIIAGHEDGSISIYDART---GKELVDSDEEHS-------SKINDLQFSRDRT-YFITGSKDTTAKL 216 (327)
T ss_pred -ceeeeeecccCCEEEEecCCCcEEEEEccc---Cceeeechhhhc-------cccccccccCCcc-eEEecccCcccee
Confidence 799999999 89999999999999999998 554433 33333 6799999999875 5789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEecCCCc---------
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVEQGEEP--------- 305 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~~~~~~--------- 305 (343)
||+++.+....+. .+.+|++.+++|.... .++-++.+.. +..-......
T Consensus 217 ~D~~tl~v~Kty~------------te~PvN~aaisP~~d~---------VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 217 VDVRTLEVLKTYT------------TERPVNTAAISPLLDH---------VILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred eeccceeeEEEee------------ecccccceecccccce---------EEecCCceeeeeeeecccccchhhhHHHHH
Confidence 9999976666655 5789999999998774 3334444432 3222222111
Q ss_pred -----ccccccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 306 -----FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 306 -----~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
-.+..+-.|||++++|| +|.--.+|++|+.+++.
T Consensus 276 ~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHhccccccccCcceeEECC-CCcccccCCCCceEEEE
Confidence 12223348999999999 67888999999988764
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=2.3e-25 Score=178.00 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=218.7
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.--.|.++|-.++++|-. +++-+|++++.|+. ..|+-=+. .... -+...|.+.|++.... +..+.++++.|
T Consensus 9 ~c~ghtrpvvdl~~s~it-p~g~flisa~kd~~---pmlr~g~t--gdwi--gtfeghkgavw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPIT-PDGYFLISASKDGK---PMLRNGDT--GDWI--GTFEGHKGAVWSATLNKNATRAASAAAD 80 (334)
T ss_pred EEcCCCcceeEEeccCCC-CCceEEEEeccCCC---chhccCCC--CCcE--EeeeccCcceeeeecCchhhhhhhhccc
Confidence 334688999999999943 68899999999854 22322222 1111 2234789999999888 66677888899
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
-+-++||.-.+.++... .|+--|.+++|+ .+++++|+.+..++++|+++.+.+..-+.+|.. .|..+-|.. .
T Consensus 81 ftakvw~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg-~Ir~v~wc~eD 155 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG-GIRTVLWCHED 155 (334)
T ss_pred chhhhhhhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC-cceeEEEeccC
Confidence 99999998766555333 377789999999 889999999999999999987666666667766 899999987 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+.+++.++|++||+||.|+ +..+.++... .+|+++.++++|+. ++-...+.|++||..+......+-
T Consensus 156 ~~iLSSadd~tVRLWD~rT---gt~v~sL~~~--------s~VtSlEvs~dG~i--lTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRT---GTEVQSLEFN--------SPVTSLEVSQDGRI--LTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred ceEEeeccCCceEEEEecc---CcEEEEEecC--------CCCcceeeccCCCE--EEEecCceeEEeccccccceeecc
Confidence 8899999999999999999 7888776643 67999999999863 355677899999998754433322
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccc--ccccccceeeecCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELL--AEPCAINSFDIDPQNP 325 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~--~~~~~i~s~~~~~~~~ 325 (343)
-...|.+...+|... .++.+++|+.++.+|+.. +..+.+ .++.||.++.++| +|
T Consensus 223 ------------~P~nV~SASL~P~k~----------~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dG 279 (334)
T KOG0278|consen 223 ------------MPCNVESASLHPKKE----------FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DG 279 (334)
T ss_pred ------------CccccccccccCCCc----------eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CC
Confidence 345688889999875 799999999999988753 233443 4478999999999 78
Q ss_pred CeeEEccCCceEEEEe
Q 019258 326 SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 ~~l~~~~~~~~i~~~~ 341 (343)
..-++|++||.|++|-
T Consensus 280 E~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQ 295 (334)
T ss_pred ceeeccCCCceEEEEE
Confidence 9999999999999984
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-22 Score=167.30 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=198.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCCeEEEEcC--CC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQSLVAASTL--SG 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~~l~~~s~--dg 92 (343)
...+|++|.+++ ++.++++++.|.. |++++..+.. .+.++.. .-.|..++|. ....++.++. |.
T Consensus 13 ~~~~i~sl~fs~----~G~~litss~dDs-----l~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSD----DGLLLITSSEDDS-----LRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecC----CCCEEEEecCCCe-----EEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence 467999999999 8999999888854 8899996533 2333333 3467788887 5666666665 88
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCC-
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPT- 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 169 (343)
+|+..++.+++.+... .+|...|++++.+ ++.|+|++.|++|++||++..+ +...+... .-...+|.|.+
T Consensus 81 tIryLsl~dNkylRYF---~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~---~~pi~AfDp~GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYF---PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLS---GRPIAAFDPEGL 153 (311)
T ss_pred ceEEEEeecCceEEEc---CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecC---CCcceeECCCCc
Confidence 9999999977766554 4799999999999 9999999999999999999764 44333322 24467889944
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.++++.....|++||+|+.+ ..|...+....... ...+.+.|+|+|..+++ ++..+.+++.|.-.+.....+.+
T Consensus 154 ifA~~~~~~~IkLyD~Rs~d-kgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFD-KGPFTTFSITDNDE----AEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred EEEEecCCCeEEEEEecccC-CCCceeEccCCCCc----cceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEee
Confidence 45555555599999999821 34555555443222 67999999999987765 57888999999988775555542
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccc-cccccceeeecCCCCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLA-EPCAINSFDIDPQNPS 326 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~-~~~~i~s~~~~~~~~~ 326 (343)
.. ....-+ ....|.|++. ++++|+.||+|.+|+... ....+.. ...++..+-++| .
T Consensus 228 ~~-------~~~~~~-~~a~ftPds~----------Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~ 286 (311)
T KOG1446|consen 228 YP-------NAGNLP-LSATFTPDSK----------FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---R 286 (311)
T ss_pred cc-------CCCCcc-eeEEECCCCc----------EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC---c
Confidence 11 111112 5778999988 799999999999998743 2333333 356777888999 4
Q ss_pred eeEEccCCceEEEE
Q 019258 327 DVICSLEWESIAIV 340 (343)
Q Consensus 327 ~l~~~~~~~~i~~~ 340 (343)
+..-.+.+..+.+|
T Consensus 287 ~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 287 YAMFVSASSNLVFW 300 (311)
T ss_pred eeeeeecCceEEEE
Confidence 54444445566666
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=184.79 Aligned_cols=243 Identities=13% Similarity=0.210 Sum_probs=198.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceee---ee--eccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLL---SV--DENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~---~~--~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
+...+.+.|..|+ ++++|++|+-||.|.+|+..++... .. ....-.|..+|.|++|+ .+.+++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 4456778999999 9999999999999999998644321 11 11112477899999999 788999999999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
|.++++...+++-..|.. +|+|+.|+. +..+++++.|.++++.-+.+ ++.+..+.+|. ..|+.+.|.+
T Consensus 290 Wri~tG~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHs-------Syvn~a~ft~ 358 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHS-------SYVNEATFTD 358 (508)
T ss_pred EEEecchHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCcc-------ccccceEEcC
Confidence 999999644444335555 899999999 88899999999999999999 89999999887 8899999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
+|.++ ++++.||+|++|+.++.++...+.- .+...+|+.+..-|.++. +++.|-..+++++
T Consensus 359 dG~~i-isaSsDgtvkvW~~KtteC~~Tfk~---------~~~d~~vnsv~~~PKnpe---------h~iVCNrsntv~i 419 (508)
T KOG0275|consen 359 DGHHI-ISASSDGTVKVWHGKTTECLSTFKP---------LGTDYPVNSVILLPKNPE---------HFIVCNRSNTVYI 419 (508)
T ss_pred CCCeE-EEecCCccEEEecCcchhhhhhccC---------CCCcccceeEEEcCCCCc---------eEEEEcCCCeEEE
Confidence 99776 5899999999999998777666542 335678999999999998 9999999999999
Q ss_pred EecCCCcccccc----cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 299 VEQGEEPFELLA----EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 299 ~~~~~~~~~~~~----~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+.......... +....-+..++| .|.++-|.++|+.+|+|+
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSp-kGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecC-CCcEEEEEccCcEEEEEE
Confidence 887654433332 245666677888 689999999999999885
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=165.34 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=181.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC---CCCCCccCCCCCCeeEEEcc----CCCeEEEEc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA---SLTPHSQWTPPTRISSLSTS----HQSLVAAST 89 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s 89 (343)
|...|.+++|+| .+++++|||.|+. +++..+..+. ...-+..-.|.+.|.+++|. .+..++...
T Consensus 88 hkgsiyc~~ws~----~geliatgsndk~-----ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 88 HKGSIYCTAWSP----CGELIATGSNDKT-----IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred cCccEEEEEecC----ccCeEEecCCCce-----EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 445899999999 8999999999965 4455553221 11113334578999999998 223344444
Q ss_pred CCC--cEEEEEccCceeeeeeccCCccccCeEEE-EecCCEEEEEeCCCcEEEEECCCCceEEEEEcC--C----Cccce
Q 019258 90 LSG--SLHVLSSAMQVLLSVDENSGFHVGPISGV-DLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDG--N----GLVGF 160 (343)
Q Consensus 90 ~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~--~----~~~~v 160 (343)
.-| .|++-|...++.+.... +|++-|.++ .|++-.|++|+.|.+|++||++-+. ....... | ++..|
T Consensus 159 gagdc~iy~tdc~~g~~~~a~s---ghtghilalyswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALS---GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred CCCcceEEEeecCCCCcceeec---CCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCccccee
Confidence 444 44444555666555443 688888886 6889999999999999999998764 3333321 1 23479
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 161 NCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
.+++..| +.+|++|-.|....+||+|. ++++..+..|. ..|.|+.|+|. .+++++|+.|-.|++-|+.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg---~r~iq~f~phs-------adir~vrfsp~-a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG---GRMIQRFHPHS-------ADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC---CceeeeeCCCc-------cceeEEEeCCC-ceEEEEecccceEEEeecc
Confidence 9999999 88888888899999999999 89999998776 78999999996 5667899999999999985
Q ss_pred CC---ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 240 WQ---QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 240 ~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.. +.|.... ..|...+.++.|+|+.- -+++.|.|.+..+|-.
T Consensus 304 gdla~el~~~vv----------~ehkdk~i~~rwh~~d~----------sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 304 GDLAHELPIMVV----------AEHKDKAIQCRWHPQDF----------SFISSSADKTATLWAL 348 (350)
T ss_pred cchhhcCceEEE----------EeccCceEEEEecCccc----------eeeeccCcceEEEecc
Confidence 42 3455544 56889999999999976 5899999999999865
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.7e-23 Score=168.33 Aligned_cols=270 Identities=11% Similarity=0.077 Sum_probs=208.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
.|..+|.+|+|.- ++..|++|+.|+. +.+|++......+......|.+.|-.++|. .+++|++++.|.+
T Consensus 18 ~~~~~v~Sv~wn~----~g~~lasgs~dkt-----v~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 18 GHVQKVHSVAWNC----DGTKLASGSFDKT-----VSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred hhhhcceEEEEcc----cCceeeecccCCc-----eEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 3667899999999 9999999999976 559999654333334445788889999998 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|++||++.......... ++.=.-+.|+ +++++.++.|..|...|.++.+ +...++... .+.-+.|+. ++.
T Consensus 89 ir~wd~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~~--e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFKF--EVNEISWNNSNDL 161 (313)
T ss_pred EEEEEeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccc-eeehhcccc--eeeeeeecCCCCE
Confidence 99999996665544432 1222445555 9999999999999999998874 444433333 377778877 777
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|+.....|.|.|..... -+|+..++.|. ....||.|+|+|++ ||+|+.|-.+-+||+...-+...+.
T Consensus 162 Fflt~GlG~v~ILsyps---Lkpv~si~AH~-------snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is-- 228 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPS---LKPVQSIKAHP-------SNCICIEFDPDGRY-FATGSADALVSLWDVDELICERCIS-- 228 (313)
T ss_pred EEEecCCceEEEEeccc---cccccccccCC-------cceEEEEECCCCce-EeeccccceeeccChhHhhhheeec--
Confidence 77777789999988766 78888888776 66889999999975 6999999999999997655544443
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.+.=+|..|.|+-++. +|+++|+|..|-+=+-. ....+-.....+.++++|||+ ...|+
T Consensus 229 ---------RldwpVRTlSFS~dg~----------~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~~LLA 288 (313)
T KOG1407|consen 229 ---------RLDWPVRTLSFSHDGR----------MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-RPLLA 288 (313)
T ss_pred ---------cccCceEEEEeccCcc----------eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-Cceee
Confidence 4678999999999988 89999999998775432 222343455678999999994 46666
Q ss_pred EccCC
Q 019258 330 CSLEW 334 (343)
Q Consensus 330 ~~~~~ 334 (343)
.+.|+
T Consensus 289 yA~dd 293 (313)
T KOG1407|consen 289 YACDD 293 (313)
T ss_pred EEecC
Confidence 66654
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.3e-24 Score=173.05 Aligned_cols=235 Identities=19% Similarity=0.264 Sum_probs=178.1
Q ss_pred CCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..|.+++|+ ...+++++|.||+||+|+++... ....+....|.++|.++.|+ |..+++++.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 44679999999 56778899999999999998532 22223334589999999999 899999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-C--CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-P--TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~--~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
++..+ ..|+. +|..+.|.+ . ..|+||+.|++|++||+|+ ..++.++... +.+.+++.-. .
T Consensus 105 -Q~~~v-~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~---~~pv~t~~LP--------eRvYa~Dv~~---p 167 (347)
T KOG0647|consen 105 -QVSQV-AAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS---SNPVATLQLP--------ERVYAADVLY---P 167 (347)
T ss_pred -Ceeee-eeccc-ceeEEEEecCCCcceeEecccccceeecccCC---CCeeeeeecc--------ceeeehhccC---c
Confidence 45544 45666 899999987 3 4799999999999999999 7888887644 4588877643 3
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++.+..++.|.+|+++++........ ..-.-.+.+|+..++.. ..+-||-.|++.+-..+
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~---------SpLk~Q~R~va~f~d~~----------~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIE---------SPLKWQTRCVACFQDKD----------GFALGSIEGRVAIQYID 228 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhc---------CcccceeeEEEEEecCC----------ceEeeeecceEEEEecC
Confidence 677889999999999987654433331 22345689999999877 46899999998764332
Q ss_pred C----Ccccc--cc-------cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 E----EPFEL--LA-------EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~----~~~~~--~~-------~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. ..+.+ .. +.-+||+++|||.- ..++.++.||++.+|++
T Consensus 229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDK 280 (347)
T ss_pred CCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecc
Confidence 2 11111 11 13479999999955 66777777999999975
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=173.74 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=193.6
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc---CCCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS---HQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~---~~~~l~ 86 (343)
+...-.|.+.|..+...- .+.+|||+|.|+. ++|+.+....+..++.+ .+|.|+|..++|. -+.+|+
T Consensus 4 q~idt~H~D~IHda~lDy----ygkrlATcsSD~t-----VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY----YGKRLATCSSDGT-----VKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred eehhhhhhhhhhHhhhhh----hcceeeeecCCcc-----EEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee
Confidence 444446777888777766 7899999999976 66999966555344444 5799999999998 678999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCC--ceEEEEEcCCCccce
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGG--GEFKRVYDGNGLVGF 160 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~--~~~~~~~~~~~~~~v 160 (343)
+++.||.|.||+-..++--...++ ..|.+.|++++|- |-.|++++.||.|.+.+.+.. ....++...|.. .|
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-Gv 152 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GV 152 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-cc
Confidence 999999999999875532222232 3699999999997 778999999999999988653 223334445554 89
Q ss_pred EEEEeCC---C------------CEEEEEeCCCcEEEEEccccCCCC-Cee-EEecccCCCCCcccCeEEEEEcCCC---
Q 019258 161 NCVKWAS---P------------TEFVTGGFGYGLQWWDLRRAGSGG-PVL-QFKGNFGSQGKASGMIHSVDIHPSR--- 220 (343)
Q Consensus 161 ~~~~~~~---~------------~~l~t~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~v~~~p~~--- 220 (343)
++++|.| + .+|++|+-|+.|+||+... .+ ... .+..|. +.|..++|.|.-
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~---~~w~~e~~l~~H~-------dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS---DSWKLERTLEGHK-------DWVRDVAWAPSVGLP 222 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC---cchhhhhhhhhcc-------hhhhhhhhccccCCC
Confidence 9999988 2 4599999999999999977 32 111 244444 899999999974
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
...+|++++||+|.||-.+....+.... ..+.....++.+.|++.+. .|+.++.|+.+.+|+
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~t--------ll~~f~~~~w~vSWS~sGn----------~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKT--------LLEEFPDVVWRVSWSLSGN----------ILAVSGGDNKVTLWK 284 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccc--------ccccCCcceEEEEEecccc----------EEEEecCCcEEEEEE
Confidence 4678999999999999877533333321 0144678899999999988 688889999999998
Q ss_pred cCCC
Q 019258 301 QGEE 304 (343)
Q Consensus 301 ~~~~ 304 (343)
.+..
T Consensus 285 e~~~ 288 (299)
T KOG1332|consen 285 ENVD 288 (299)
T ss_pred eCCC
Confidence 8654
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=172.98 Aligned_cols=233 Identities=20% Similarity=0.240 Sum_probs=180.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
+....|++|.|+ ..+.|++++.||++++|++...+.... -.|.+++.+++|. ...+++|+-||.|+++|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh----eecCCceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 344679999999 777888889999999999985532211 2488999999998 7899999999999999999873
Q ss_pred eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
...+..|.. ++.|+.+.+ .+.+++|+.|++|++||.|. ..+...+... ..|.+++... +.|+
T Consensus 87 --~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d~~--------kkVy~~~v~g---~~Lv 149 (323)
T KOG1036|consen 87 --EDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRN---KVVVGTFDQG--------KKVYCMDVSG---NRLV 149 (323)
T ss_pred --ceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccc---cccccccccC--------ceEEEEeccC---CEEE
Confidence 333455666 899999999 88999999999999999997 3333333311 4599998864 3567
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE--EecCC
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV--VEQGE 303 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~--~~~~~ 303 (343)
.|+.|..|.+||+|+...+..... ...+-.+.+|++.|... -.+.+|-||++.+ .|..+
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re---------S~lkyqtR~v~~~pn~e----------Gy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE---------SSLKYQTRCVALVPNGE----------GYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc---------ccceeEEEEEEEecCCC----------ceEEEeecceEEEEccCCch
Confidence 899999999999999887774432 33567899999999655 5889999999987 44442
Q ss_pred Cccc----cccc---------ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 EPFE----LLAE---------PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~~~~----~~~~---------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+... +.-+ .-|||+++||| .-+.+++|+.||.|-+|+-
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccC
Confidence 2211 1000 25899999999 4578999999999999974
No 95
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=184.98 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=189.3
Q ss_pred eeeEEecCC---CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-------------------cCCCCCCeeEEE
Q 019258 21 IDAVRWLPP---LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-------------------QWTPPTRISSLS 78 (343)
Q Consensus 21 i~~v~w~p~---~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-------------------~~~~~~~v~~v~ 78 (343)
.-|+.|.-. ...-++++|.|.+|.+ |.|||+.-.....+.. ...|...|.++.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~-----IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPE-----IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCce-----eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 456677664 3345689999999975 7799984321111111 224777889999
Q ss_pred cc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 79 TS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 79 ~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
|. ..+.|++|+.|.+|++||+...++..... .|.++|.++.|+ ...+++|+.|++|.+.|.+........+.
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 98 66889999999999999999776655543 488999999998 78999999999999999985332333333
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.-. .|-.+.|.+ ...++.+..||+|+-+|+|+ +++++.+++.|. ++|.++++++.-++++++++.|+
T Consensus 328 ~~g--~VEkv~w~~~se~~f~~~tddG~v~~~D~R~--~~~~vwt~~AHd-------~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 328 FDG--EVEKVAWDPHSENSFFVSTDDGTVYYFDIRN--PGKPVWTLKAHD-------DEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred ecc--ceEEEEecCCCceeEEEecCCceEEeeecCC--CCCceeEEEecc-------CCcceEEecCCCCcceeeccccc
Confidence 333 488999998 77899999999999999999 779999999887 88999999999999999999999
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|++|++... .|..... +..--+...+.+++|+.+. .++.++..+.+++|+...
T Consensus 397 ~Vklw~~~~~-~~~~v~~--------~~~~~~rl~c~~~~~~~a~---------~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 397 VVKLWKFDVD-SPKSVKE--------HSFKLGRLHCFALDPDVAF---------TLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eEEEEeecCC-CCccccc--------ccccccceeecccCCCcce---------EEEecCccceEEEeeccc
Confidence 9999998652 2222110 0111234678888999887 888999999999999743
No 96
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.3e-23 Score=171.69 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=168.6
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCce-----ee-----e--eeccCCccccCeEEEEec---CCEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQV-----LL-----S--VDENSGFHVGPISGVDLT---GSECVS 130 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~-----~~-----~--~~~~~~~h~~~v~~~~~~---~~~~~s 130 (343)
-+|.|.|+++... .++++++|+.||.|.+||+.+.. .+ . -...+.+|+..|.++.|. ...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999887 88999999999999999997321 11 1 112345688899999998 778999
Q ss_pred EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC---CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 131 VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS---PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
++-|.++++||+.+-+ ..-.+...+ .|++-+++| .. ++++|..|-+|++.|+.+ +.....+.+|.
T Consensus 120 sSFDhtlKVWDtnTlQ-~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S---Gs~sH~LsGHr----- 188 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQ-EAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS---GSFSHTLSGHR----- 188 (397)
T ss_pred ccccceEEEeecccce-eeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccC---Ccceeeecccc-----
Confidence 9999999999999873 444444444 488888888 23 566667799999999999 77778888887
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc----ccCCccccEEEEEEeecCCCCcCCCC
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV----THSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
+.|.+|.|+|...+++++|+.||.|++||+|........+..+..+.. +..+|.+.|+.++|..++.
T Consensus 189 --~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~------- 259 (397)
T KOG4283|consen 189 --DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR------- 259 (397)
T ss_pred --CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-------
Confidence 779999999999999999999999999999875332222222210000 1257899999999998887
Q ss_pred CccceEEEecCCeEEEEecCCCcc
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
++++|+.|.++++|+......
T Consensus 260 ---~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 260 ---YLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ---hhhhccCccceEEeecccCcc
Confidence 899999999999999755443
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-22 Score=167.90 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=180.1
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC--CCcEEEEECCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE--DGRVNLVSVIG 144 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~--dg~v~~wd~~~ 144 (343)
..+.|+++.|+ ++.+|++++.|..++|||..++....... .++..|..+.|. ...++.++. |.+|+..++.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 36799999999 88999999999999999998665554443 244466666665 666666665 89999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ ..+.+.+|.. .|..++.+| +..|++++.|++|++||+|. .++.-.+.. ..-..++|+|.| .+
T Consensus 90 Nk-ylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~---~~cqg~l~~---------~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 90 NK-YLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRV---KKCQGLLNL---------SGRPIAAFDPEG-LI 154 (311)
T ss_pred Cc-eEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecC---CCCceEEec---------CCCcceeECCCC-cE
Confidence 84 7778888887 899999999 99999999999999999997 444433332 224467899987 57
Q ss_pred EEEEecCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 224 CLAGGSSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+|++.....|++||+|.- ..|.....+. ..-+.++..|.|+|++. .++-+...+.+++.+.-
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-------~~~~~ew~~l~FS~dGK----------~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSIT-------DNDEAEWTDLEFSPDGK----------SILLSTNASFIYLLDAF 217 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccC-------CCCccceeeeEEcCCCC----------EEEEEeCCCcEEEEEcc
Confidence 788888779999999985 4565555322 24467899999999998 67888888899998875
Q ss_pred CCc----cccccccc-ccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEP----FELLAEPC-AINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~----~~~~~~~~-~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+. .+...... --.+..+.| +++++++|++||+|++|+
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEE
Confidence 432 12222222 125667788 679999999999999997
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=179.67 Aligned_cols=280 Identities=16% Similarity=0.159 Sum_probs=202.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC--------------CCCCCcc--CCCCCCeeEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA--------------SLTPHSQ--WTPPTRISSLST 79 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~--------------~~~~~~~--~~~~~~v~~v~~ 79 (343)
+|-..|.+|..+| ++.+..++|-|+. |.-|++.... ...++.. -.|...+.+++.
T Consensus 140 ~H~~s~~~vals~----d~~~~fsask~g~-----i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSP----DDKRVFSASKDGT-----ILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred cccCcceEEEeec----cccceeecCCCcc-----eeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 5777899999999 8889999998864 4456652110 1111111 167788999999
Q ss_pred c-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC
Q 019258 80 S-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG 156 (343)
Q Consensus 80 ~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~ 156 (343)
+ ++.+|++|..|..|.||+..+.+.+.. ..+|.+.|.+++|. ...+++++.|++|++|+++....+..++. |.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG-Hq 286 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG-HQ 286 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC-Cc
Confidence 9 999999999999999999986655544 34799999999998 77899999999999999988754455554 44
Q ss_pred ccceEEEEeCCCCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWASPTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
. .|.++.-.....++|++ .|+++++|++.. +.-..+.++. +.+-|++|-.+. + |++|+.||.|.+
T Consensus 287 d-~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----esqlifrg~~-------~sidcv~~In~~-H-fvsGSdnG~IaL 352 (479)
T KOG0299|consen 287 D-GVLGIDALSRERCVTVGGRDRTVRLWKIPE----ESQLIFRGGE-------GSIDCVAFINDE-H-FVSGSDNGSIAL 352 (479)
T ss_pred c-ceeeechhcccceEEeccccceeEEEeccc----cceeeeeCCC-------CCeeeEEEeccc-c-eeeccCCceEEE
Confidence 4 69999877744455555 899999999955 2222344444 679999998754 3 579999999999
Q ss_pred EEccCCceeeeeecCCCCccccc--CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTH--SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE 311 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~ 311 (343)
|++-+ ..|+......-.....+ ..+..+|++|+..|... .++++|.+|+|++|..... .+.++..
T Consensus 353 Ws~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd----------L~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 353 WSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD----------LLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eeecc-cCceeEeeccccccCCccccccccceeeeEecccCc----------eEEecCCCCceEEEEecCCccccceeee
Confidence 99976 44444332111100000 11224899999999877 8999999999999987554 3333333
Q ss_pred ---ccccceeeecCCCCCeeEEccCC
Q 019258 312 ---PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 312 ---~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
..-||++.|++ +|..+++|--.
T Consensus 422 ls~~GfVNsl~f~~-sgk~ivagiGk 446 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSN-SGKRIVAGIGK 446 (479)
T ss_pred cccccEEEEEEEcc-CCCEEEEeccc
Confidence 46799999998 56777777533
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=175.97 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=163.8
Q ss_pred CCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc------Cceee---------eeeccCCccccCeEEEEec-
Q 019258 62 LTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA------MQVLL---------SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 62 ~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~------~~~~~---------~~~~~~~~h~~~v~~~~~~- 124 (343)
.+......|.+++.+.+|+ ++.++++|+.|-.|+|+|++ ..+++ .+++....|..+|+++.|.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 3444456788999999999 99999999999999999986 11111 2333444688999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 125 -GSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 125 -~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
...+++++.|++|+++|..... +..+.+.... +|.+++|+| +..++.|..-.++++||+.+ .++.......
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTdHp~~rlYdv~T---~QcfvsanPd 257 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTDHPTLRLYDVNT---YQCFVSANPD 257 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecCCCceeEEeccc---eeEeeecCcc
Confidence 8889999999999999997632 2233333333 699999999 88888999999999999988 4443333322
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCcC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~ 279 (343)
. + +.+.|+++.+++.+. +.++|+.||.|++||--..++...+. .+|. .+|.+..|..++.
T Consensus 258 ~--q--ht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~----------~AH~gsevcSa~Ftkn~k---- 318 (430)
T KOG0640|consen 258 D--Q--HTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG----------NAHGGSEVCSAVFTKNGK---- 318 (430)
T ss_pred c--c--cccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH----------hhcCCceeeeEEEccCCe----
Confidence 2 2 338899999999985 67899999999999987766665555 5565 4699999999888
Q ss_pred CCCCccceEEEecCCeEEEEec
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++++.+.|..+++|+.
T Consensus 319 ------yiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 319 ------YILSSGKDSTVKLWEI 334 (430)
T ss_pred ------EEeecCCcceeeeeee
Confidence 8999999999999984
No 100
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1e-22 Score=189.20 Aligned_cols=217 Identities=10% Similarity=0.044 Sum_probs=155.0
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce-------EEEEEcCCCc
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE-------FKRVYDGNGL 157 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~-------~~~~~~~~~~ 157 (343)
|+.++.+++|+......+... .+|.++|.+++|+ +..|++|+.||+|++||+.++.. +...+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L---~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL---KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE---cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 566888999988754333222 3799999999998 57899999999999999975321 2234455655
Q ss_pred cceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.|.+++|+| .. .+++++.|++|++||++. ++.+..+. +. ..|.+++|+|+|. ++++++.|+.|++
T Consensus 127 -~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~-~~-------~~V~SlswspdG~-lLat~s~D~~IrI 193 (568)
T PTZ00420 127 -KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQIN-MP-------KKLSSLKWNIKGN-LLSGTCVGKHMHI 193 (568)
T ss_pred -cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEe-cC-------CcEEEEEECCCCC-EEEEEecCCEEEE
Confidence 799999999 44 457899999999999998 55555554 22 5699999999986 5678889999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEE-----EEEeecCCCCcCCCCCccceEEEecCC----eEEEEecCC--C
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-----VQYDCHTKSSNISSSRVLPAMFCSEDG----ILAVVEQGE--E 304 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----v~~~p~~~~~~~~~~~~~~l~s~s~dg----~i~~~~~~~--~ 304 (343)
||+|++.....+ .+|.+.+.. ..|++++. ++++++.|+ .|++||... .
T Consensus 194 wD~Rsg~~i~tl-----------~gH~g~~~s~~v~~~~fs~d~~----------~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 194 IDPRKQEIASSF-----------HIHDGGKNTKNIWIDGLGGDDN----------YILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EECCCCcEEEEE-----------ecccCCceeEEEEeeeEcCCCC----------EEEEEEcCCCCccEEEEEECCCCCC
Confidence 999986554433 457665433 33446655 688877774 799999763 2
Q ss_pred cccccccccccce--eeecCCCCCeeEEccCCceEEEEe
Q 019258 305 PFELLAEPCAINS--FDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 305 ~~~~~~~~~~i~s--~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+......+..... ..+++++|.++++|..|+.|++|.
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 2222222222222 123344678999999999999986
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.9e-24 Score=190.53 Aligned_cols=270 Identities=14% Similarity=0.148 Sum_probs=203.9
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCC-CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeee
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWT-PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLS 106 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~ 106 (343)
+.+++|.||+.|+. |++|++..... ..+...++ |..-|+++..+ +++.|+++|.|-+|++|+..... ..
T Consensus 35 ~~~ryLfTgGRDg~-----i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~ 108 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGI-----IRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TF 108 (735)
T ss_pred CCCceEEecCCCce-----EEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-ch
Confidence 57788999999975 78999954321 12233444 56679999888 78899999999999999998443 22
Q ss_pred eeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce---------EE-EEEcCCCccceEEEEeCC-CCEEE
Q 019258 107 VDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE---------FK-RVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~---------~~-~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
.....+.|...|.|+++- ...++|||-|+.|.+||++++.. .. .+..++.. ++++++.++ +..++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-SIYSLAMNQTGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-ceeeeecCCcceEEE
Confidence 233445799999999993 77889999999999999986521 01 11113333 799999998 77899
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+|+..+.|++||.|+ .+.+..+.+|. .-|..+-.+++|..+ +++++||+|++||++..++...+
T Consensus 188 sGgtek~lr~wDprt---~~kimkLrGHT-------dNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQrCl~T~----- 251 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRT---CKKIMKLRGHT-------DNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQRCLATY----- 251 (735)
T ss_pred ecCcccceEEecccc---ccceeeeeccc-------cceEEEEEcCCCCeE-eecCCCceEEeeeccccceeeeE-----
Confidence 999999999999999 88888898887 779999999999765 69999999999999987666664
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEE
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
..|...||+++.+|+-. .+++|+.||.|+.-+... +..-++.+..||..+..+..+.+. =.
T Consensus 252 ------~vH~e~VWaL~~~~sf~----------~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-Wv 314 (735)
T KOG0308|consen 252 ------IVHKEGVWALQSSPSFT----------HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WV 314 (735)
T ss_pred ------EeccCceEEEeeCCCcc----------eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-ee
Confidence 46899999999998766 799999999998866533 333344456778877777433232 33
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
++.+..|.-|+
T Consensus 315 tTtds~I~rW~ 325 (735)
T KOG0308|consen 315 TTTDSSIKRWK 325 (735)
T ss_pred eeccccceecC
Confidence 44455666664
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=8.1e-23 Score=192.55 Aligned_cols=304 Identities=15% Similarity=0.085 Sum_probs=213.0
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEe--ecCCCCCCceeeeeCCC--------CC--CCCCCccCCCCCCeeE
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAI--YDTDADSPSLETHSISL--------PA--SLTPHSQWTPPTRISS 76 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s--~D~~~~~~~l~~w~~~~--------~~--~~~~~~~~~~~~~v~~ 76 (343)
|+.+.. +.+.|.+|.-+| ++..|+||+ .|+. +.+|+... +. ...+.....|.+.|+|
T Consensus 6 p~wv~H--~~~~IfSIdv~p----dg~~~aTgGq~~d~~-----~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~C 74 (942)
T KOG0973|consen 6 PTWVNH--NEKSIFSIDVHP----DGVKFATGGQVLDGG-----IVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNC 74 (942)
T ss_pred cccccc--CCeeEEEEEecC----CceeEecCCcccccc-----ceeeccccccchhhhhhcccchhheeeccccCceeE
Confidence 444443 334599999999 999999999 6754 44898721 11 1223444578999999
Q ss_pred EEcc-CCCeEEEEcCCCcEEEEEccC---c------------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEE
Q 019258 77 LSTS-HQSLVAASTLSGSLHVLSSAM---Q------------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVN 138 (343)
Q Consensus 77 v~~~-~~~~l~~~s~dg~v~v~~~~~---~------------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~ 138 (343)
+.|+ ++.+||+|+.|+.|.||+... . +.........+|.+.|..+.|+ +.+++++|.|++|.
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 9999 999999999999999999862 0 0112222334699999999999 89999999999999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+|+..+. .....+.+|.+ .|..+.|.| +.+|++-++|++|++|++.. -...+.+..+..+.. -......+.|+
T Consensus 155 iwn~~tF-~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~~~-~~T~f~RlSWS 228 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEESP-LTTFFLRLSWS 228 (942)
T ss_pred EEccccc-eeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEccc---ceeeEeeccchhhCC-CcceeeecccC
Confidence 9999998 56777777877 899999999 99999999999999999755 223333332221110 11458899999
Q ss_pred CCCCeEEEEEecCC---cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC---CCcCC---CCCc-cce
Q 019258 218 PSRKHTCLAGGSSG---TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK---SSNIS---SSRV-LPA 287 (343)
Q Consensus 218 p~~~~~~~sg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---~~~~~---~~~~-~~l 287 (343)
|+|.++...-+-++ ++.|.+=.+-..-..+ -+|.+++..+.|+|.-- ..++. .+-. ..+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-----------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-----------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeee-----------ecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 99987643333222 3555553221222233 46999999999998421 11111 1111 147
Q ss_pred EEEecCCeEEEEecCC-Cccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGE-EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~-~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++||.|++|-+|.... +++-+..+ ..+|..+.|+| +|..|++.+-||.|+++.
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIH 353 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEE
Confidence 7899999999999853 34444444 47899999999 566666666788998764
No 103
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=169.82 Aligned_cols=236 Identities=15% Similarity=0.237 Sum_probs=181.8
Q ss_pred cCCcccceeeEEecCCC-CCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCC------CccCCCCCCeeEEEcc--CCC
Q 019258 14 RFPQSKYIDAVRWLPPL-SPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTP------HSQWTPPTRISSLSTS--HQS 83 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~-~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~------~~~~~~~~~v~~v~~~--~~~ 83 (343)
.|.|..+++++-|.|.+ ...+++|||++ | .||+|.+..++ ...+ -+..++.+++++..|. +++
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS-D------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc-C------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 37899999999999963 24557777765 4 49999996432 1111 2234567899999999 899
Q ss_pred eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC-ccc
Q 019258 84 LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG-LVG 159 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~-~~~ 159 (343)
++.+.+-|-+..|||++.+..-.+....-+|..+|..++|. -+.|+++|.||.|+++|++......-+++... ..+
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 99999999999999998642211122223699999999998 57899999999999999998654455555544 447
Q ss_pred eEEEEeCC--CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 160 FNCVKWAS--PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
...++|++ .++++|-.. ...|.|.|+|. +..++.++.+|. +.|+.|+|.|....-+.++++|..+.+|
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~--P~tpva~L~~H~-------a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRV--PCTPVARLRNHQ-------ASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecC--CCcceehhhcCc-------ccccceEecCCCCceeeecCCcceEEEE
Confidence 88999998 666666555 67899999999 888999999887 8899999999988888999999999999
Q ss_pred EccCCce-----eeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 237 DLRWQQQ-----SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 237 d~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
|+.+... |.... . -+++|++++|++..+.
T Consensus 316 Dl~q~~~~~~~dPilay----------~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAY----------T-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred ecccccccCCCCchhhh----------h-ccceeeeeeecccCCC
Confidence 9975432 22222 2 4678999999998886
No 104
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=8.1e-23 Score=171.45 Aligned_cols=236 Identities=12% Similarity=0.077 Sum_probs=183.2
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
....|.-|+|+| ..+.|+.|+.|+. +|+|.++.+ ..+....+|..++++=+|. ++.+++++..||+|+
T Consensus 147 e~~dieWl~WHp----~a~illAG~~DGs-----vWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 147 EVEDIEWLKWHP----RAHILLAGSTDGS-----VWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEEecc----cccEEEeecCCCc-----EEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 456788899999 8999999999974 999999764 3334445789999999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc--------CCCccceEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD--------GNGLVGFNCVKW 165 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--------~~~~~~v~~~~~ 165 (343)
+|+....+++...... ...+..++.++ +..++.|+.++.+++-...+++ +..... .+.. .+.++++
T Consensus 216 ~Wn~ktg~p~~~~~~~--e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~~~~~l~~~~e~-~~esve~ 291 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQA--EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNGTVPELKPSQEE-LDESVES 291 (399)
T ss_pred EEecCCCceeEEeccc--ccCcCCccccccccceeEeccCCccEEEEccccce-EEEecCCCCccccccchh-hhhhhhh
Confidence 9999877665444322 23456677776 8888999999999998887775 443333 1222 3555555
Q ss_pred CC----CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 166 AS----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 166 ~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
.| -.+.++|+-||+|.|||+.. ..++....|. ..|..+.|.++ ..+++++.||.|+.||.|++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~----~~~R~~c~he-------~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAA----STLRHICEHE-------DGVTKLKWLNT--DYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccchhhcccccceEEEEeccc----chhheeccCC-------CceEEEEEcCc--chheeeccCceEEeeecccc
Confidence 55 45677888899999999977 3334433343 67999999983 34678999999999999998
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+....+ .+|...|.+++++|+.. .++++|.|++.++++-
T Consensus 359 ~l~~~y-----------~GH~~~Il~f~ls~~~~----------~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 359 QLKFTY-----------TGHQMGILDFALSPQKR----------LVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEE-----------ecCchheeEEEEcCCCc----------EEEEecCCCeEEEEec
Confidence 766555 57999999999999987 8999999999999875
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=175.09 Aligned_cols=248 Identities=19% Similarity=0.155 Sum_probs=190.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|.+++-+| ++++||||..|+. +.||+..+-+..+. .-.|.+.|.+++|- ....|++++.|..|
T Consensus 200 ~h~keil~~avS~----Dgkylatgg~d~~-----v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 200 GHVKEILTLAVSS----DGKYLATGGRDRH-----VQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASADRSV 268 (479)
T ss_pred cccceeEEEEEcC----CCcEEEecCCCce-----EEEecCcccchhhc--ccccccceeeeeeecCccceeeeecCCce
Confidence 6778899999999 9999999999964 66999965333322 34788999999999 77889999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-CCEEEE-EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVS-VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s-~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
++|+++ .+...+...+|...|.+++.. -..++| ++.|+++++|++... .+.++.++.. .+.|++|.....|+
T Consensus 269 kvw~~~---~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~-sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 269 KVWSID---QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEG-SIDCVAFINDEHFV 342 (479)
T ss_pred EEEehh---HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCC-CeeeEEEeccccee
Confidence 999998 344445556899999999998 445555 559999999999654 4555566665 79999999988999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCC-----cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK-----ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+|+++|.|.+|++-. .+|+......++-... ++.+|++++..|. ..++++|+.+|.|++|-+..+..++..
T Consensus 343 sGSdnG~IaLWs~~K---Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLK---KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred eccCCceEEEeeecc---cCceeEeeccccccCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCccccce
Confidence 999999999999988 7888776544321111 1138999999995 578999999999999988765333333
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+. ...-.+.|++|+|++++.. .++.++....+--|-.
T Consensus 419 l~--------~ls~~GfVNsl~f~~sgk~---------ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 419 LY--------SLSLVGFVNSLAFSNSGKR---------IVAGIGKEHRLGRWWC 455 (479)
T ss_pred ee--------ecccccEEEEEEEccCCCE---------EEEecccccccceeeE
Confidence 21 0225688999999999885 4555676666655543
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=187.18 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|...|.++++.. .++.+++||.|.+ +++||... ..|...+. |.+.|.++... +.++++|+.|.+|
T Consensus 247 GH~g~V~~l~~~~----~~~~lvsgS~D~t-----~rvWd~~s---g~C~~~l~gh~stv~~~~~~-~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 247 GHFGGVWGLAFPS----GGDKLVSGSTDKT-----ERVWDCST---GECTHSLQGHTSSVRCLTID-PFLLVSGSRDNTV 313 (537)
T ss_pred CCCCCceeEEEec----CCCEEEEEecCCc-----EEeEecCC---CcEEEEecCCCceEEEEEcc-CceEeeccCCceE
Confidence 4666777777776 6789999999976 67999854 45555544 88888888775 6778888999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTG 174 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~ 174 (343)
++|+++++..+.+.. +|.++|+++..++..+++|+.|++|++||+.+++ +...+.+|.. .|+++.+...+.+++|
T Consensus 314 kVW~v~n~~~l~l~~---~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~-~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLR---GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTG-RVYSLIVDSENRLLSG 388 (537)
T ss_pred EEEeccCcceEEEec---cccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcc-eEEEEEecCcceEEee
Confidence 999999776666553 4999999999999999999999999999999984 7777777776 8999977765889999
Q ss_pred eCCCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 175 GFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
+.|++|++||++. . +++..+.+|. +-+..+.+.. +++++++.||+|++||....+....+.
T Consensus 389 s~D~~IkvWdl~~---~~~c~~tl~~h~-------~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~----- 450 (537)
T KOG0274|consen 389 SLDTTIKVWDLRT---KRKCIHTLQGHT-------SLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLE----- 450 (537)
T ss_pred eeccceEeecCCc---hhhhhhhhcCCc-------cccccccccc---ceeEeccccccEEEeecccCceeeeec-----
Confidence 9999999999999 5 6777777665 5566666543 457899999999999998866655554
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|...|..+++. .. .+++++.||++.+|+...
T Consensus 451 -----~~~~~~v~~l~~~--~~----------~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 451 -----GRHVGGVSALALG--KE----------EILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -----cCCcccEEEeecC--cc----------eEEEEecCCeeEEEeccc
Confidence 2256788888886 23 689999999999998753
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=9.3e-24 Score=176.92 Aligned_cols=232 Identities=18% Similarity=0.221 Sum_probs=184.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
-.|...|.+++=+ .-..+++|+.||.|++||+...+++.. ..+|.+.|.++.+....++++|.|.+|+.|.++..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEEecccceEEecCCcceeeeeccCC
Confidence 4677789888877 336799999999999999984433322 34799999999999889999999999999998874
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+...+.+.. .+..+.-+. .+.++|+|. .|.|||... ..|+.++.--. ..|.++.|+|....+|
T Consensus 140 --p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---~~Pv~smswG~-------Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 140 --PLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQR---DNPVSSMSWGA-------DSISSVKFNPVETSIL 203 (433)
T ss_pred --cceeeeccc--cccccccccccccccccCc--eeeeccccc---CCccceeecCC-------CceeEEecCCCcchhe
Confidence 555555444 488888777 777888875 689999988 78888877333 6699999999999999
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-- 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-- 302 (343)
++|++|+.|.+||+|+. .|+.... -...-+.|+|+| ... .++++++|-.++.+|..
T Consensus 204 as~~sDrsIvLyD~R~~-~Pl~KVi-----------~~mRTN~IswnP-eaf---------nF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQA-SPLKKVI-----------LTMRTNTICWNP-EAF---------NFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred eeeccCCceEEEecccC-Cccceee-----------eeccccceecCc-ccc---------ceeeccccccceehhhhhh
Confidence 99999999999999984 4443321 234567899999 454 79999999999999864
Q ss_pred CCccccccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+..+... ..+|.++|++| .|+.+++|+-|..|+||+
T Consensus 262 ~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 262 SRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred cccchhhcccceeEEEeccCC-CcchhccccccceEEEee
Confidence 333333333 57899999999 789999999999999986
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.7e-23 Score=169.23 Aligned_cols=277 Identities=16% Similarity=0.137 Sum_probs=201.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-CccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP-HSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.+-|-.|+-.. ..+.+.|+|.|.+ -+||.++. ..| ....+|.|.|++++|+ .+.++++++.|++.
T Consensus 147 HkDGiW~Vaa~~----tqpi~gtASADhT-----A~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 147 HKDGIWHVAADS----TQPICGTASADHT-----ARIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred cccceeeehhhc----CCcceeecccccc-----eeEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 445555555444 4458889999976 45999954 444 4456799999999999 78889999999999
Q ss_pred EEEEcc------C---------ce---------------------eeee-eccCCccccCeEEEEec--CCEEEEEeCCC
Q 019258 95 HVLSSA------M---------QV---------------------LLSV-DENSGFHVGPISGVDLT--GSECVSVGEDG 135 (343)
Q Consensus 95 ~v~~~~------~---------~~---------------------~~~~-~~~~~~h~~~v~~~~~~--~~~~~s~s~dg 135 (343)
+||... . .+ .+.+ .-...+|.+.|.+.+|. ++++++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 999831 0 00 0111 11234688999999998 89999999999
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+..+||++++ .+...+.+|+. .++-++-+| +.++++.+.|.+.++||+|. .-..+..|.+|. ..|+++
T Consensus 295 TAnlwDVEtg-e~v~~LtGHd~-ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHt-------dtVTS~ 363 (481)
T KOG0300|consen 295 TANLWDVETG-EVVNILTGHDS-ELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHT-------DTVTSV 363 (481)
T ss_pred cceeeeeccC-ceeccccCcch-hccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccc-------cceeEE
Confidence 9999999999 47777778877 777778788 88889999999999999997 344555677776 779999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED- 293 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d- 293 (343)
.|.-+. -+++|++|.+|++||+|+.+.|+.... -..+++.++.+...+ ++.--.|
T Consensus 364 vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIR-----------tdS~~NRvavs~g~~-----------iIAiPhDN 419 (481)
T KOG0300|consen 364 VFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIR-----------TDSPANRVAVSKGHP-----------IIAIPHDN 419 (481)
T ss_pred EEecCC--ceeecCCCceEEEeeeccccCcceeee-----------cCCccceeEeecCCc-----------eEEeccCC
Confidence 998864 357999999999999999888887662 357788999987665 4455445
Q ss_pred CeEEEEecCCCccccccc------ccccceeeecCC--CCCeeEEccCCceEEEEe
Q 019258 294 GILAVVEQGEEPFELLAE------PCAINSFDIDPQ--NPSDVICSLEWESIAIVS 341 (343)
Q Consensus 294 g~i~~~~~~~~~~~~~~~------~~~i~s~~~~~~--~~~~l~~~~~~~~i~~~~ 341 (343)
..|+++|.+....-.++. -.-|.+.+|..+ --+.+.||- |..+.=|+
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF-DR~v~gW~ 474 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF-DRMVAGWK 474 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccc-cceeeeeE
Confidence 469999976544333331 133667777532 224455554 55554444
No 109
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.6e-23 Score=178.61 Aligned_cols=258 Identities=9% Similarity=0.057 Sum_probs=194.2
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcC--CCcEEEEEccCc-eeeeeeccCCccccCeEEEEec--C
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTL--SGSLHVLSSAMQ-VLLSVDENSGFHVGPISGVDLT--G 125 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~--dg~v~v~~~~~~-~~~~~~~~~~~h~~~v~~~~~~--~ 125 (343)
+++||+.......++-....+..+.+++|...+.|++++. |..+++|.-... .++...+...+. .-.|+... .
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S 91 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQS 91 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcc
Confidence 6799996543333332233333499999995555666654 678888876632 123333332222 22333333 6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 126 SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 126 ~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.++++||..++|++||++.. .+.+....|.+ .|+++.|+. ..++++++..|.|.|..+.+ +..-..|....+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih~~~t---~~~tt~f~~~sg-- 164 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK-LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIHGTKT---KQKTTTFTIDSG-- 164 (673)
T ss_pred eeeeccCcCceeeehhhHHH-HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEEEeccc---CccccceecCCC--
Confidence 88999999999999999965 57777777876 999999999 78899999999999999988 444445553322
Q ss_pred CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCc
Q 019258 205 GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRV 284 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~ 284 (343)
..|.-+.++|..++++.+++++|.|.+||... +.|..... +.|.++...|+|+|.+..
T Consensus 165 ----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~---------~~HsAP~~gicfspsne~-------- 222 (673)
T KOG4378|consen 165 ----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHAS---------EAHSAPCRGICFSPSNEA-------- 222 (673)
T ss_pred ----CeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchh---------hhccCCcCcceecCCccc--------
Confidence 44778999999999999999999999999875 44444331 789999999999999987
Q ss_pred cceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 285 LPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 285 ~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++.+.|..|+++|.... ....+.-..|..++++.+ +|.+|++|+..|.|+.|+
T Consensus 223 -l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 223 -LLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYD 278 (673)
T ss_pred -eEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEe
Confidence 8999999999999998643 445555678999999998 789999999999999886
No 110
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.3e-22 Score=182.58 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=194.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
..|-+..|.| .++++++|...++ |.++++....-. ...-.|.+.|.+++-+ ++..+++|+.|.+|++|
T Consensus 413 ~y~l~~~Fvp----gd~~Iv~G~k~Ge-----l~vfdlaS~~l~--Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 413 GYILASKFVP----GDRYIVLGTKNGE-----LQVFDLASASLV--ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ccEEEEEecC----CCceEEEeccCCc-----eEEEEeehhhhh--hhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 4677888999 7788899877655 779998542222 2223699999999999 88999999999999999
Q ss_pred Ecc--Cce------eeeeeccCC-ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 98 SSA--MQV------LLSVDENSG-FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 98 ~~~--~~~------~~~~~~~~~-~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.. ... .+.+.+... .-...|.|+.++ +.+++.+=-|.+|++|-+++-+-...++ +|.- +|.|+..+
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkL-PV~smDIS 559 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKL-PVLSMDIS 559 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-cccc-ceeEEecc
Confidence 986 110 011110000 013478999998 8888888999999999999975444554 6766 99999999
Q ss_pred C-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 167 S-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 167 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
| +..++||+.|+.|++|-+.- +.+-..+.+|. +.|+++.|.|. .++|.+++.||.|+.||..+.+..+
T Consensus 560 ~DSklivTgSADKnVKiWGLdF---GDCHKS~fAHd-------DSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDF---GDCHKSFFAHD-------DSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred CCcCeEEeccCCCceEEecccc---chhhhhhhccc-------CceeEEEEccc-ceeEEEecCcceEEeechhhhhhhe
Confidence 9 99999999999999999977 88888888887 78999999996 5678899999999999998866655
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
.+ .+|...|++++..|++. +++|+|.|.+|++|+..++.
T Consensus 629 ~L-----------~~H~~ev~cLav~~~G~----------~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 629 KL-----------DGHHSEVWCLAVSPNGS----------FVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ee-----------ccchheeeeeEEcCCCC----------eEEeccCCceeEeeeccCcc
Confidence 55 47999999999999988 89999999999999987654
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=171.65 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=188.7
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCc
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGF 113 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~ 113 (343)
++++++...+. .|-+|.+..+... ....-.+++|.++.-+ .+.+|+.|+-.|.+++|.+..+..+.+. .+
T Consensus 51 ~yllsaq~~rp----~l~vw~i~k~~~~--~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~a 121 (476)
T KOG0646|consen 51 EYLLSAQLKRP----LLHVWEILKKDQV--VQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SA 121 (476)
T ss_pred hheeeecccCc----cccccccCchhhh--hhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH---Hh
Confidence 56666654432 5678888543332 1234567899999988 7777777779999999999977665544 36
Q ss_pred cccCeEEEEec--CCEEEEEeCCCcEEEEECCC--------CceEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcE
Q 019258 114 HVGPISGVDLT--GSECVSVGEDGRVNLVSVIG--------GGEFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGL 180 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~--------~~~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i 180 (343)
|...|+++.|+ +.+|+|+|.||.|.+|++.. ...+...+..|.. +|+++...+ ..+++|++.|.++
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceE
Confidence 99999999999 89999999999999998722 2246777777776 899998776 6789999999999
Q ss_pred EEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-ee--eeecCC--CCcc
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SI--VLSGVG--TGEA 255 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~--~~~~~~--~~~~ 255 (343)
++||+.. +..+.++... ..+++++.+|.+.. +..|+++|.|.+.++.+... .. ...+.+ ...-
T Consensus 201 k~wdlS~---g~LLlti~fp--------~si~av~lDpae~~-~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~ 268 (476)
T KOG0646|consen 201 KLWDLSL---GVLLLTITFP--------SSIKAVALDPAERV-VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI 268 (476)
T ss_pred EEEEecc---ceeeEEEecC--------CcceeEEEcccccE-EEecCCcceEEeeehhcCCccccccccccccccccee
Confidence 9999998 7777775533 66999999998765 56899999999999865331 00 000000 0000
Q ss_pred cccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccccccccceeeecC
Q 019258 256 VTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAEPCAINSFDIDP 322 (343)
Q Consensus 256 ~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~ 322 (343)
-+..+|++ +|++++.+-|+. .|++|+.||.+.+||.... . ..+.....+|+.+.+.|
T Consensus 269 ~~~~Gh~~~~~ITcLais~Dgt----------lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGT----------LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eeeccccCCcceeEEEEecCcc----------EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 01256777 999999999887 8999999999999997532 2 33333567788877754
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-21 Score=159.64 Aligned_cols=252 Identities=13% Similarity=0.187 Sum_probs=179.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC-CCCCCCCccC-CCCCCeeEEEcc---CCCeEEEEcC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQW-TPPTRISSLSTS---HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~-~~~~~~~~~~-~~~~~v~~v~~~---~~~~l~~~s~ 90 (343)
.|.+-|+++.|.+ .|+++||||.|+. +++|++.+ ...+.+...+ .|.+.|..+.|. -++.+++++.
T Consensus 11 ~h~DlihdVs~D~----~GRRmAtCSsDq~-----vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF----YGRRMATCSSDQT-----VKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred CCcceeeeeeecc----cCceeeeccCCCc-----EEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 4668899999999 9999999999975 66999743 2334444443 478999999998 6788999999
Q ss_pred CCcEEEEEccCce------eeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEE---------E
Q 019258 91 SGSLHVLSSAMQV------LLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKR---------V 151 (343)
Q Consensus 91 dg~v~v~~~~~~~------~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~---------~ 151 (343)
|+++.||+-.... .-.......-....|+++.|. |-.+++++.||.|++|+......... +
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999999763111 111111112245689999997 88999999999999999865321111 1
Q ss_pred Ec--CCCccceEEEEeCC----CCEEEEEeCC-----CcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEc
Q 019258 152 YD--GNGLVGFNCVKWAS----PTEFVTGGFG-----YGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 152 ~~--~~~~~~v~~~~~~~----~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~ 217 (343)
.. +.......|+.|++ ...|+.|+.+ +.++||.... .++.... +..+. .+|+.++|.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~rKw~kva~L~d~~-------dpI~di~wA 232 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGRKWLKVAELPDHT-------DPIRDISWA 232 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--CcceeeeehhcCCCC-------Ccceeeeec
Confidence 11 11222688999988 4445555543 3899998765 2323332 33333 899999999
Q ss_pred CCC---CeEEEEEecCCcEEEEEccCCc----------------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 218 PSR---KHTCLAGGSSGTVFAWDLRWQQ----------------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 218 p~~---~~~~~sg~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
|+- .+++|+++.|| |+||.++... .++.... .+..|.++||.+.|+-.+.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs-------~~~~H~~~VWrv~wNmtGt--- 301 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVS-------ELDDHNGEVWRVRWNMTGT--- 301 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEee-------eccCCCCceEEEEEeeeee---
Confidence 974 47899999999 9999997422 1222211 1267999999999998877
Q ss_pred CCCCCccceEEEecCCeEEEEecCC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|.|.++||++++|+...
T Consensus 302 -------iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 302 -------ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -------EEeecCCCceeeehhhhh
Confidence 799999999999998753
No 113
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=174.36 Aligned_cols=234 Identities=16% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 69 TPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 69 ~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
.....|.+++|+ ++.-++++++- .+.||+........... .-+..|.+++|. |..+++|...|.|+++|+.+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~s---rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFS---RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHH---hhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 445789999999 55566666554 58899876333222111 245678999998 88899999999999999666
Q ss_pred CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
. ...+.+..|.. ++..+.|+| ...|++|++|+.+++||+.. ......+.+|. +.|.|.+++|..++
T Consensus 100 r-~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---a~v~~~l~~ht-------DYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 100 R-VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---AYVQAELSGHT-------DYVRCGDISPANDH 167 (487)
T ss_pred H-HHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCC---cEEEEEecCCc-------ceeEeeccccCCCe
Confidence 4 45666677777 899999999 66788999999999999987 44333566665 88999999999999
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++++|++||+|++||+|....++..+ .|..+|-.|.+-|.+. .+++|+ ...+++||.-
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-----------nhg~pVe~vl~lpsgs----------~iasAg-Gn~vkVWDl~ 225 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-----------NHGCPVESVLALPSGS----------LIASAG-GNSVKVWDLT 225 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-----------cCCCceeeEEEcCCCC----------EEEEcC-CCeEEEEEec
Confidence 99999999999999999864333333 4889999999999876 566554 4579999975
Q ss_pred CCc---ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEP---FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~---~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... .....+...|.++.+.. ++..|++|+-|+.+.+|+
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred CCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEE
Confidence 332 23333578999999998 569999999999999986
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1e-21 Score=168.26 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=187.1
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
.+.++... ..+.+++|+.|..+.++|...++.+... .+|...|+.+.++ ...+++++.|..|++|...... ..
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~---~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL---KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP 296 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc---cCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc
Confidence 46666666 4488999999999999999866655444 4799999999999 6778999999999999987764 34
Q ss_pred EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 150 RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.....|+. +|+.+..+| +.+|++++.|++..+.|.++ +..+....... .. -.+++.+|||+| .+|.+|.
T Consensus 297 ~~~~~h~~-~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~---g~~lt~vs~~~-s~----v~~ts~~fHpDg-Lifgtgt 366 (506)
T KOG0289|consen 297 TSSRPHEE-PVTGLSLHPTGEYLLSASNDGTWAFSDISS---GSQLTVVSDET-SD----VEYTSAAFHPDG-LIFGTGT 366 (506)
T ss_pred cccccccc-cceeeeeccCCcEEEEecCCceEEEEEccC---CcEEEEEeecc-cc----ceeEEeeEcCCc-eEEeccC
Confidence 44456666 899999999 99999999999999999999 77666554321 01 459999999997 6899999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccc
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFE 307 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~ 307 (343)
.||.|++||+..+.....+ .+|+++|.+|+|+.++- +|+++++|+.|++||... +...
T Consensus 367 ~d~~vkiwdlks~~~~a~F-----------pght~~vk~i~FsENGY----------~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKF-----------PGHTGPVKAISFSENGY----------WLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred CCceEEEEEcCCccccccC-----------CCCCCceeEEEeccCce----------EEEEEecCCeEEEEEehhhcccc
Confidence 9999999999986533333 57999999999997665 899999999999999753 2332
Q ss_pred ccc--cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LLA--EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+. +...+++++++. .|.+|+.++.+=.||++++
T Consensus 426 t~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred eeeccccccceeEEEcC-CCCeEEeecceeEEEEEec
Confidence 222 235799999987 6799999998888888763
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=4.4e-22 Score=173.78 Aligned_cols=245 Identities=14% Similarity=0.188 Sum_probs=175.0
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-eeee-eeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-VLLS-VDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~~~~-~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
...|+++++. .+-+|++|+.|-+|++||+... ..+. ...........|++++|+ ++.|+..+..-..+++|-+..
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 3468899998 8899999999999999999721 1111 111111123378999998 999999998889999996543
Q ss_pred ceEEEEE------------cCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 146 GEFKRVY------------DGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 146 ~~~~~~~------------~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
...++. .+|.. .++|.+|+| ...|+|++.|+++|+||+.. .......++... ++...-++
T Consensus 247 -~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~--~k~q~qVik~k~--~~g~Rv~~ 320 (641)
T KOG0772|consen 247 -EIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN--TKSQLQVIKTKP--AGGKRVPV 320 (641)
T ss_pred -eeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCC--chhheeEEeecc--CCCcccCc
Confidence 233332 23433 799999999 77899999999999999977 333333344222 11122679
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEccCCce-eeeeecCCCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SIVLSGVGTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
+.++|+|++.. ||+|+.||.|.+||.+.... |.... ..+|.. .|++|.|+++++ +|+
T Consensus 321 tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~v---------k~AH~~g~~Itsi~FS~dg~----------~Ll 380 (641)
T KOG0772|consen 321 TSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKV---------KDAHLPGQDITSISFSYDGN----------YLL 380 (641)
T ss_pred eeeecCCCcch-hhhcccCCceeeeecCCcccccceEe---------eeccCCCCceeEEEeccccc----------hhh
Confidence 99999999875 79999999999999865332 22222 167877 899999999998 799
Q ss_pred EEecCCeEEEEecCCCcc-----cccccccccceeeecCCCCCeeEEccCC------ceEEEEeC
Q 019258 289 FCSEDGILAVVEQGEEPF-----ELLAEPCAINSFDIDPQNPSDVICSLEW------ESIAIVSR 342 (343)
Q Consensus 289 s~s~dg~i~~~~~~~~~~-----~~~~~~~~i~s~~~~~~~~~~l~~~~~~------~~i~~~~~ 342 (343)
|-|.|++|++|+...... +-+....+-....|+|++ +.+++|++- +.+++|.+
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEec
Confidence 999999999999754322 222335677888999954 777777643 34666653
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=161.15 Aligned_cols=234 Identities=14% Similarity=0.147 Sum_probs=174.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.|...|++|+-+ ++++|+||.|.+ |.|||+....+. -..+.|.+.|+++.|. ....|++|+.||
T Consensus 41 aH~~sitavAVs------~~~~aSGssDet-----I~IYDm~k~~ql--g~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 41 AHAGSITALAVS------GPYVASGSSDET-----IHIYDMRKRKQL--GILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ccccceeEEEec------ceeEeccCCCCc-----EEEEeccchhhh--cceeccccceEEEEecCCcchhheeeecCCC
Confidence 477778888764 468999999965 779999654332 3346789999999999 234899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
.|.+|+...- ....+.++|.+.|+.++++ ++..++.+.|+.+++|++-+++..... .-.. ..+.+.|+| +.
T Consensus 108 ~i~iw~~~~W---~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L~~--~at~v~w~~~Gd 181 (362)
T KOG0294|consen 108 HIIIWRVGSW---ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-NLKN--KATLVSWSPQGD 181 (362)
T ss_pred cEEEEEcCCe---EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee-ccCC--cceeeEEcCCCC
Confidence 9999999843 3445556899999999998 788889999999999999887533222 2222 244599999 66
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|+.++ .+.|-+|.+.. ......+... ..+.|+.|... ..+++|.+|+.|.+||... ..|....
T Consensus 182 ~F~v~~-~~~i~i~q~d~---A~v~~~i~~~--------~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds-~~~~~~~- 245 (362)
T KOG0294|consen 182 HFVVSG-RNKIDIYQLDN---ASVFREIENP--------KRILCATFLDG--SELLVGGDNEWISLKDTDS-DTPLTEF- 245 (362)
T ss_pred EEEEEe-ccEEEEEeccc---HhHhhhhhcc--------ccceeeeecCC--ceEEEecCCceEEEeccCC-Cccceee-
Confidence 666555 56788999876 3333333311 33777777653 3567999999999999886 5555655
Q ss_pred CCCCcccccCCccccEEEEEEe--ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYD--CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~--p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|+..|.++.+- |++ . +|+|+|.||.|++|+...
T Consensus 246 ---------~AH~~RVK~i~~~~~~~~-~---------~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 246 ---------LAHENRVKDIASYTNPEH-E---------YLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ---------ecchhheeeeEEEecCCc-e---------EEEEeccCceEEEEEccc
Confidence 6899999999853 333 3 899999999999999754
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.3e-21 Score=184.39 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=183.1
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC---------------CCCCCC-ccCCCCCCeeEEE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP---------------ASLTPH-SQWTPPTRISSLS 78 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~---------------~~~~~~-~~~~~~~~v~~v~ 78 (343)
-.|...|+||+|+| ++.+||+||.|+- +.+|..... +.+++. ....|.+.|.+++
T Consensus 66 ~~h~~sv~CVR~S~----dG~~lAsGSDD~~-----v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSP----DGSYLASGSDDRL-----VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred ccccCceeEEEECC----CCCeEeeccCcce-----EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 36888999999999 9999999999943 568887520 122232 2346899999999
Q ss_pred cc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc-C
Q 019258 79 TS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD-G 154 (343)
Q Consensus 79 ~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~-~ 154 (343)
|+ ++.+|++++.|++|.||+....+.+... .+|.+.|-.+.|. |++|++-+.|++|++|++.+-. +.+.+. +
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~p 212 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKP 212 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEcccce-eeEeeccc
Confidence 99 8999999999999999999866444433 4799999999999 9999999999999999976632 222221 1
Q ss_pred ----CCccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC------
Q 019258 155 ----NGLVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS------ 219 (343)
Q Consensus 155 ----~~~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~------ 219 (343)
.....+..+.|+| +.+|++.-. -.++.|.+-.. =+.-..+.+|. +++.++.|+|.
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t---Wk~~~~LvGH~-------~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT---WKVDKDLVGHS-------APVEVVRFNPKLFERNN 282 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---ceeeeeeecCC-------CceEEEEeChHHhcccc
Confidence 1223588899999 777776644 44566665432 22223466666 88999999983
Q ss_pred C------C----eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 220 R------K----HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 220 ~------~----~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
. . .++|+|+.|++|-||.... ..|.-.. +......|.+|+|+|++- .|+.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi---------~~lf~~SI~DmsWspdG~----------~Lfa 342 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVI---------HNLFNKSIVDMSWSPDGF----------SLFA 342 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhh---------hhhhcCceeeeeEcCCCC----------eEEE
Confidence 1 1 2889999999999999854 3444332 145678999999999987 7999
Q ss_pred EecCCeEEEEec
Q 019258 290 CSEDGILAVVEQ 301 (343)
Q Consensus 290 ~s~dg~i~~~~~ 301 (343)
||.||+|.++.-
T Consensus 343 cS~DGtV~~i~F 354 (942)
T KOG0973|consen 343 CSLDGTVALIHF 354 (942)
T ss_pred EecCCeEEEEEc
Confidence 999999998653
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.5e-21 Score=157.74 Aligned_cols=234 Identities=14% Similarity=0.128 Sum_probs=173.7
Q ss_pred cCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 67 QWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 67 ~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
...|.+.|++++.+ +.++++|+.|.+|+|||+.....+.... .|.+.|+++.|. ...|++|+.||.|.+|+.
T Consensus 39 ~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll---~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 39 FSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILL---SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhccee---ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 34578899999987 8999999999999999998544333222 489999999998 238999999999999999
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
..= .....+..|.. .|+.++.+| +.+.++.+.|+.+++|++-. ++.-..+... ...+.|.|.|.|.
T Consensus 115 ~~W-~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~---Gr~a~v~~L~--------~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 115 GSW-ELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVR---GRVAFVLNLK--------NKATLVSWSPQGD 181 (362)
T ss_pred CCe-EEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhc---CccceeeccC--------CcceeeEEcCCCC
Confidence 876 46666677777 699999999 88889999999999999987 4433322211 2345599999998
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++.+ +.. ..|-+|-+..... .... .....+.++.|.. .. .|++|.+|+.|.+||.
T Consensus 182 ~F~v-~~~-~~i~i~q~d~A~v-~~~i-----------~~~~r~l~~~~l~--~~---------~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 182 HFVV-SGR-NKIDIYQLDNASV-FREI-----------ENPKRILCATFLD--GS---------ELLVGGDNEWISLKDT 236 (362)
T ss_pred EEEE-Eec-cEEEEEecccHhH-hhhh-----------hccccceeeeecC--Cc---------eEEEecCCceEEEecc
Confidence 6544 343 4788898765322 1111 1123455666653 33 7999999999999998
Q ss_pred CC--Ccccccccccccceeee-cCCCCCeeEEccCCceEEEEeC
Q 019258 302 GE--EPFELLAEPCAINSFDI-DPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 302 ~~--~~~~~~~~~~~i~s~~~-~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+. ...++..+...|-+|.+ ..+.+.+|+++++||.|.||+.
T Consensus 237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 73 23566666777777773 3225689999999999999974
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=6.6e-22 Score=168.40 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=178.3
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|..+.+-+ ++..++.++.|+. +++|++...... .+...|...|+++.|. ....+++|+.|.+|++||
T Consensus 221 ~it~~d~d~----~~~~~iAas~d~~-----~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 221 NITSIDFDS----DNKHVIAASNDKN-----LRLWNVDSLRLR--HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred CcceeeecC----CCceEEeecCCCc-----eeeeeccchhhh--hhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 488888888 7888899999976 669999553222 2223599999999999 444499999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d 177 (343)
+......... .-...|.+|..+...++|+-.|++|++||.+... .......+. .|+++..+. +..+++.+.|
T Consensus 290 l~k~~C~kt~----l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg--~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 290 LQKAYCSKTV----LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG--RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhheeccc----cccccccceEecceeeeecccccceEEEeccCCc-eeeEeecCc--ceeeEeeccCCeEEeeecCC
Confidence 9854332211 1234567777667788999999999999999985 444445555 599999988 8889999999
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVT 257 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 257 (343)
.++.+.|+|. .+....+.... -+.. .-.+.+.|+|++.+ +++|+.||.|+||++.++.....+.
T Consensus 363 dtl~viDlRt---~eI~~~~sA~g-~k~a--sDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~--------- 426 (459)
T KOG0288|consen 363 DTLKVIDLRT---KEIRQTFSAEG-FKCA--SDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLS--------- 426 (459)
T ss_pred Cceeeeeccc---ccEEEEeeccc-cccc--cccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEec---------
Confidence 9999999998 33333333221 1111 34899999999864 6899999999999998865554444
Q ss_pred cCCcc-ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 258 HSLSE-SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 258 ~~~h~-~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..+. ..|+++.|+|.+. .|++++.++.+.+|.
T Consensus 427 -~s~s~~aI~s~~W~~sG~----------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 -LSTSNAAITSLSWNPSGS----------GLLSADKQKAVTLWT 459 (459)
T ss_pred -cCCCCcceEEEEEcCCCc----------hhhcccCCcceEecC
Confidence 2233 3899999999887 799999999999883
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2e-21 Score=167.46 Aligned_cols=294 Identities=13% Similarity=0.086 Sum_probs=197.7
Q ss_pred CcccceeeEEecCCCCCCC-CeEEEEeecCCCCCCceeeeeCC--CCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcC
Q 019258 16 PQSKYIDAVRWLPPLSPLS-KLAVLAIYDTDADSPSLETHSIS--LPASLTPHSQWTPPTRISSLSTS--HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~-~~l~t~s~D~~~~~~~l~~w~~~--~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~ 90 (343)
.+..+|.+++|+|+ .+ .+++.|..-++++ +|++. ++.........+|.++|.++.|+ +...+++.|.
T Consensus 184 v~~~Rit~l~fHPt---~~~~lva~GdK~G~VG-----~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPT---ENRKLVAVGDKGGQVG-----LWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEeccc---CcceEEEEccCCCcEE-----EEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 46688999999993 44 7777776666655 99994 22223334456788999999999 8889999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
||+|++-|++....-.+.... .-.....+++++ ...++.+..=|...+||++++..-...+.-|.. .|..++++|
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPV 333 (498)
T ss_pred CceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCC
Confidence 999999999843211111110 122345677777 667778888789999999986543444444555 799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCC-CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc---CCc
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGG-PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR---WQQ 242 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~---~~~ 242 (343)
...++|++.|++.+|||+|+=+... |+.....|. ..|+++.|+|.+.. +++-+.|..|+|||.. ...
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-------rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR-------RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceeccccc-------ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccC
Confidence 7789999999999999999711111 222222232 67999999999877 6788999999999984 223
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccccc-cccccee-
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAE-PCAINSF- 318 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~-~~~i~s~- 318 (343)
.|....... +. .+.--......|.|+.. +++.+-.-..|-+++...+. .++... ...|.++
T Consensus 406 ~p~~~I~Hn-~~----t~RwlT~fKA~W~P~~~----------li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn 470 (498)
T KOG4328|consen 406 EPLGTIPHN-NR----TGRWLTPFKAAWDPDYN----------LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVN 470 (498)
T ss_pred Cccceeecc-Cc----ccccccchhheeCCCcc----------EEEEeccCcceeEEcCCCCEEeeeccCccccccccce
Confidence 333332100 00 01112346678999766 78888888889999876544 343332 2234333
Q ss_pred eecCCCCCeeEEccCCceEEEEeC
Q 019258 319 DIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+||-+...++.|+..|.||+|+.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 678843224444556689999874
No 121
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=192.22 Aligned_cols=256 Identities=16% Similarity=0.162 Sum_probs=195.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---CCCCCC-CccCCCCCCeeEEEcc--CCCe
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---PASLTP-HSQWTPPTRISSLSTS--HQSL 84 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---~~~~~~-~~~~~~~~~v~~v~~~--~~~~ 84 (343)
.+-.+....+-++++|.+.......++|.|..|+. |-+|+... ...... ...-.|.|.|..+.|+ .+++
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~-----I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGN-----IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCc-----eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCce
Confidence 45555667788999999943222246888888876 55998843 222222 2334689999999999 6679
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN 161 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 161 (343)
|++|++||.|.|||+.+.+...... ...-...|.+++|+ ...|++++.+|++.+||++..+.+..+-.......+.
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 9999999999999998543221111 11244689999999 7789999999999999999876666665544434688
Q ss_pred EEEeCC--CCEEEEEeCCC---cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 162 CVKWAS--PTEFVTGGFGY---GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 162 ~~~~~~--~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.++|+| ...+++++.|. .|.+||+|. ...+++.+.+|. ..|.++.|++.+..++++++.|++|.+|
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~--assP~k~~~~H~-------~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRF--ASSPLKILEGHQ-------RGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccc--cCCchhhhcccc-------cceeeeccCCCCchhhhcccCCCCeeEe
Confidence 999999 66777777744 599999998 566777777776 6699999999998899999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+..+++..-.+. ....++..+.|+|.++. .++.+|-||.|-++..
T Consensus 282 N~~tgEvl~~~p-----------~~~nW~fdv~w~pr~P~---------~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 282 NPNTGEVLGELP-----------AQGNWCFDVQWCPRNPS---------VMAAASFDGKISIYSL 326 (1049)
T ss_pred cCCCceEeeecC-----------CCCcceeeeeecCCCcc---------hhhhheeccceeeeee
Confidence 999865544443 35688999999999997 8888999999988764
No 122
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=163.62 Aligned_cols=243 Identities=17% Similarity=0.180 Sum_probs=178.5
Q ss_pred CccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCc-------e------eeeeeccCCccccCeEEEEec---C
Q 019258 65 HSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQ-------V------LLSVDENSGFHVGPISGVDLT---G 125 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~-------~------~~~~~~~~~~h~~~v~~~~~~---~ 125 (343)
....+|.+.++.+.-. +..+.++-+..|.|+||++... . .........+|.+.=.+++|+ .
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3446677777777665 5566777778999999998510 0 001111234688888999998 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 126 SECVSVGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 126 ~~~~s~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
..++||..-+.|++|...++.-.. .-+..|.. .|-.++|+| .+.|++|+-|++|+|||+|.+. .++....+.|.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-~~~~~~~kAh~ 302 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-KKAAVSTKAHN 302 (440)
T ss_pred cccccCccccceEeeeeccCceeecCcccccccc-chhhhccCCccCceEEeeecCceEEEEEecCCC-ccceeEeeccC
Confidence 668888888999999987753111 11223555 799999999 7889999999999999999921 12222234443
Q ss_pred CCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 202 GSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
+-|+-|.|+...+ +||+|++||+++|||+|+. .+|+... +.|..+|++|.|+|....
T Consensus 303 -------sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~f----------k~Hk~pItsieW~p~e~s--- 361 (440)
T KOG0302|consen 303 -------SDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATF----------KYHKAPITSIEWHPHEDS--- 361 (440)
T ss_pred -------CceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeE----------EeccCCeeEEEeccccCc---
Confidence 6799999998766 8899999999999999974 3455555 779999999999999887
Q ss_pred CCCCccceEEEecCCeEEEEecCCCcc---------c--------cccc---ccccceeeecCCCCCeeEEccCCce
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQGEEPF---------E--------LLAE---PCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~~~~~---------~--------~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
.++++++|..|.+||...+.. + |+.- ..-+.-+.||++.+.+||+.+-+|.
T Consensus 362 ------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 362 ------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 899999999999999642221 1 2211 2457889999999999999987753
No 123
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=3.9e-21 Score=154.79 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=185.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~ 143 (343)
..|.+.|.+++|. ++..|++|+.|+++.+|++.... +......++|.+.|-.+.|. .+.|++++.|.+|++||++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 4577899999999 99999999999999999998542 22223345799999999998 7899999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+++...++.. ... -.-+.|+| +.+++.++.|..|.+.|.|. .+.....+.. -.++-+.|+-++ +
T Consensus 96 ~~k~~~~i~~-~~e--ni~i~wsp~g~~~~~~~kdD~it~id~r~---~~~~~~~~~~--------~e~ne~~w~~~n-d 160 (313)
T KOG1407|consen 96 SGKCTARIET-KGE--NINITWSPDGEYIAVGNKDDRITFIDART---YKIVNEEQFK--------FEVNEISWNNSN-D 160 (313)
T ss_pred cCcEEEEeec-cCc--ceEEEEcCCCCEEEEecCcccEEEEEecc---cceeehhccc--------ceeeeeeecCCC-C
Confidence 9975555543 332 33567788 88999999999999999998 5555444322 457888888554 4
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+|+.-...|+|.|..... -+|+..+ ++|.....+|.|+|++. ++++||.|..+-+||..
T Consensus 161 ~Fflt~GlG~v~ILsyps-Lkpv~si----------~AH~snCicI~f~p~Gr----------yfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPS-LKPVQSI----------KAHPSNCICIEFDPDGR----------YFATGSADALVSLWDVD 219 (313)
T ss_pred EEEEecCCceEEEEeccc-ccccccc----------ccCCcceEEEEECCCCc----------eEeeccccceeeccChh
Confidence 555556779999998775 4555555 78999999999999998 89999999999999987
Q ss_pred CCccccc--ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELL--AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~--~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+..=+.. ...=||..+.|+- +|++|++|++|..|.|-+
T Consensus 220 ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 220 ELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAE 259 (313)
T ss_pred HhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEe
Confidence 6442222 2256899999986 679999999999887643
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=4.1e-20 Score=161.25 Aligned_cols=270 Identities=13% Similarity=0.115 Sum_probs=197.5
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC--CCCCeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT--PPTRISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
-|....|+| .+.++++|.+.- .|..|+.....-.+....++ ....|.|++|.++...++|.++|.|.||
T Consensus 202 ~v~~a~FHP---td~nliit~Gk~------H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw 272 (626)
T KOG2106|consen 202 VVFLATFHP---TDPNLIITCGKG------HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIW 272 (626)
T ss_pred eEEEEEecc---CCCcEEEEeCCc------eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEE
Confidence 456778999 578888888643 47799885543222222222 2257999999977779999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc-----------eEEEEE-------------
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG-----------EFKRVY------------- 152 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~-----------~~~~~~------------- 152 (343)
+....+-.. .. .+|.+.|.++..- ...++||+.|+.|..||-.-.+ .++.+.
T Consensus 273 ~~~~~~~~k-~~--~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 273 SKGTNRISK-QV--HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred eCCCceEEe-Ee--eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 986433222 22 2699999999988 7788889999999999842110 111111
Q ss_pred ---------------cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 153 ---------------DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 153 ---------------~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
..|.. ....++.+| .++++|++.|+.+++|+ . .++..+.... .+..|++|
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~---~k~~wt~~~~--------d~~~~~~f 415 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--D---HKLEWTKIIE--------DPAECADF 415 (626)
T ss_pred eEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--C---CceeEEEEec--------CceeEeec
Confidence 12222 466778888 88999999999999999 3 3444442211 77999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
||.+ .++.|+..|...+.|..+ +..+.+- .. ..+++.|+|+|++. +|+.+|.|+.|
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~----------~d-~~~ls~v~ysp~G~----------~lAvgs~d~~i 471 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTET-QDLVTIH----------TD-NEQLSVVRYSPDGA----------FLAVGSHDNHI 471 (626)
T ss_pred cCcc--eEEEeeccceEEEEeccc-ceeEEEE----------ec-CCceEEEEEcCCCC----------EEEEecCCCeE
Confidence 9998 678999999999999988 3333332 23 78999999999998 79999999999
Q ss_pred EEEecCCCc--cccccc--ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 297 AVVEQGEEP--FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 297 ~~~~~~~~~--~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+++.-...- ...... ..+|..+||++ +++++.+-+-|-.|-.|
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEE
Confidence 998754332 222222 37899999999 56999999888888888
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=2e-21 Score=175.06 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEec---CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLT---GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~---~~~~~s~s~dg~v~~wd~~ 143 (343)
..|...|..++..++..+++++.||++++|+-...+.+...... .|.+-|.. +++. ...+++|+.|.++.+|...
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 46788888888877778999999999999998655444323222 45565555 5554 4569999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+. .+..++.+|.+ .|.+++......+++|+.|.++++|-. ++....+.+|. ..|.++..-|.+ .
T Consensus 90 ~~-~P~~~LkgH~s-nVC~ls~~~~~~~iSgSWD~TakvW~~-----~~l~~~l~gH~-------asVWAv~~l~e~--~ 153 (745)
T KOG0301|consen 90 QA-EPLYTLKGHKS-NVCSLSIGEDGTLISGSWDSTAKVWRI-----GELVYSLQGHT-------ASVWAVASLPEN--T 153 (745)
T ss_pred CC-Cchhhhhcccc-ceeeeecCCcCceEecccccceEEecc-----hhhhcccCCcc-------hheeeeeecCCC--c
Confidence 98 47777778887 899998776555999999999999977 34445566665 889999999975 6
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+.|.+|++|.-.+ ....+ .+|+..|..+++-+++ .++||+.||.|+.|+...
T Consensus 154 ~vTgsaDKtIklWk~~~---~l~tf----------~gHtD~VRgL~vl~~~-----------~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGGT---LLKTF----------SGHTDCVRGLAVLDDS-----------HFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred EEeccCcceeeeccCCc---hhhhh----------ccchhheeeeEEecCC-----------CeEeecCCceEEEEeccC
Confidence 78999999999997632 23333 5799999999999875 479999999999999954
Q ss_pred C-cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 E-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+ ..+...+..-|++++... +++.++|.++|++++||+.
T Consensus 210 e~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeec
Confidence 4 445555567799999555 3489999999999999985
No 126
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1e-20 Score=154.41 Aligned_cols=256 Identities=15% Similarity=0.140 Sum_probs=181.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCC--CCceeeeeCCCCCC------CCCCccCC--CCCCeeEEEcc-CCCeEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDAD--SPSLETHSISLPAS------LTPHSQWT--PPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~--~~~l~~w~~~~~~~------~~~~~~~~--~~~~v~~v~~~-~~~~l~~ 87 (343)
..|-+++-+| -+.+.|+|+-.|.... .-...||.++++.. .++++.++ +-+.|.|+.|. +.+.+++
T Consensus 64 gEvw~las~P---~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 64 GEVWDLASSP---FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cceehhhcCC---CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3455566666 4567777776543211 12357999976532 34444444 44789999999 6666666
Q ss_pred EcCCCcEEEEEccCceee--ee-eccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 88 STLSGSLHVLSSAMQVLL--SV-DENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~--~~-~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
-. |..|.+|++.+...+ .+ ......|....++-.|+ ++.++ ...|+++..||+++.++...+...|.. .+
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq-~v 217 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQ-RV 217 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcc-ee
Confidence 54 889999999854332 11 11122355566777777 44444 456889999999987666666666655 79
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 161 NCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 161 ~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
..+.|+| +..|+++++|+.|+|||+|. ...|+..+..|. .+|.+|.|+|....++++|+.|..|.+|.+
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~--tk~pv~el~~Hs-------HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRK--TKFPVQELPGHS-------HWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccC--CCccccccCCCc-------eEEEEEEecCccceEEEecCCCceeEEEec
Confidence 9999999 77899999999999999999 677888888776 889999999998899999999999999976
Q ss_pred cCCce--------------------eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 239 RWQQQ--------------------SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 239 ~~~~~--------------------~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
..-.. ....+. -+....+..|+..|++++|+.-++- .+++-|.||++.+
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~--dg~l~tydehEDSVY~~aWSsadPW---------iFASLSYDGRviI 357 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQ--DGQLETYDEHEDSVYALAWSSADPW---------IFASLSYDGRVII 357 (370)
T ss_pred cccccccccccccccccCcchhhHHhccccc--ccccccccccccceEEEeeccCCCe---------eEEEeccCceEEe
Confidence 43210 000000 0111133679999999999998886 6889999999977
Q ss_pred Ee
Q 019258 299 VE 300 (343)
Q Consensus 299 ~~ 300 (343)
=+
T Consensus 358 s~ 359 (370)
T KOG1007|consen 358 SS 359 (370)
T ss_pred ec
Confidence 43
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.7e-21 Score=167.41 Aligned_cols=258 Identities=11% Similarity=0.132 Sum_probs=188.7
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEc
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSS 99 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~ 99 (343)
|..+.|.. .++|++++..++. .+++|.-..+....+.........-.|+... ...++++|+..+.|+|||+
T Consensus 37 ~~s~~w~~-----~n~lvvas~~gdk---~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 37 DFSFNWQR-----RNFLVVASMAGDK---VMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred ceeeeccc-----cceEEEeecCCce---eEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhh
Confidence 99999998 4447777765542 3568876443211111111111122333333 3488999999999999999
Q ss_pred cCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEe
Q 019258 100 AMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGG 175 (343)
Q Consensus 100 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~ 175 (343)
.. -.+.+..+.|+..|+++.++ +++|++++..|-|.+..+.++.....+...... .+.-+.|++ ..+|.+++
T Consensus 109 ~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 109 RA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred HH---HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeec
Confidence 82 23345566899999999999 899999999999999999887433333322222 578999999 66788999
Q ss_pred CCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
++|.|.+||+.. ..|+..+. .|. +|...|+|+|..+.+|++-+.|.+|.+||.+.....-.+.
T Consensus 185 d~G~VtlwDv~g---~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------ 248 (673)
T KOG4378|consen 185 DKGAVTLWDVQG---MSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------ 248 (673)
T ss_pred cCCeEEEEeccC---CCcccchhhhcc-------CCcCcceecCCccceEEEecccceEEEeecccccccceee------
Confidence 999999999977 56665543 333 8899999999999999999999999999998643333332
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccc-cccccceeeecC
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLA-EPCAINSFDIDP 322 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~-~~~~i~s~~~~~ 322 (343)
...+...|+|.+++. +|+.|+..|+|+.||... .+..+++ +...|.+++|.+
T Consensus 249 ------y~~Plstvaf~~~G~----------~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 249 ------YSHPLSTVAFSECGT----------YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ------ecCCcceeeecCCce----------EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 567899999999987 799999999999998643 3334444 356799999987
No 128
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=174.03 Aligned_cols=243 Identities=15% Similarity=0.192 Sum_probs=192.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
.|.+.|+.+.-.. +++.|+++|.|-+ +++|+..........+.-+|...|.|+++. +..++++|+.|+.
T Consensus 71 ~HsDWVNDiiL~~----~~~tlIS~SsDtT-----VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 71 HHSDWVNDIILCG----NGKTLISASSDTT-----VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK 141 (735)
T ss_pred hhHhHHhhHHhhc----CCCceEEecCCce-----EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence 4556666666655 7889999999965 669999665422223334688999999994 7789999999999
Q ss_pred EEEEEccCce--------eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 94 LHVLSSAMQV--------LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 94 v~v~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
|.+||++... .+.......++..+|.+++.+ +..|++|+..+.+++||.++.++..++. +|.. .|.++
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTd-NVr~l 219 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTD-NVRVL 219 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-cccc-ceEEE
Confidence 9999998431 122222223688899999999 7799999999999999999987777775 6666 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
-.++ +.++++++.||+|++||+++ .+++.++..|. ..|.++..+|+-.+ +.+|+.||.|..=|+|+..
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgq---QrCl~T~~vH~-------e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQ---QRCLATYIVHK-------EGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeeccc---cceeeeEEecc-------CceEEEeeCCCcce-EEecCCCCcEEecccCCch
Confidence 9999 99999999999999999999 89999988876 55999999998655 5799999999999999864
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
....+. ..+.+|..+..+.+.. .+..++.|+.|+-|..
T Consensus 289 ~~tlic-----------k~daPv~~l~~~~~~~----------~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 289 KSTLIC-----------KEDAPVLKLHLHEHDN----------SVWVTTTDSSIKRWKL 326 (735)
T ss_pred hheEee-----------cCCCchhhhhhccccC----------CceeeeccccceecCC
Confidence 444333 2356788888887666 4688999999998874
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.6e-21 Score=157.94 Aligned_cols=237 Identities=13% Similarity=0.190 Sum_probs=188.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEEC--
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSV-- 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~-- 142 (343)
.+|...|+.++-. ..+.+.+++.|.+.+||.++.+..+... .+|.+.|+++.|+ +..+++++.|++-.+|..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 4677889888877 5668899999999999999977665443 4799999999998 888899999999999972
Q ss_pred ----CCC---------------------------------ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEE
Q 019258 143 ----IGG---------------------------------GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 143 ----~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd 184 (343)
..+ ..+...+.+|.. .|.+..|.. +..+++++.|.+-.+||
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeee
Confidence 110 011222334444 677788877 88999999999999999
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcccc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
++. ++++..+.+|. ...+-++-||.+ .++++.+.|-+.++||+|..-..+..+ ++|...
T Consensus 301 VEt---ge~v~~LtGHd-------~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF----------QGHtdt 359 (481)
T KOG0300|consen 301 VET---GEVVNILTGHD-------SELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF----------QGHTDT 359 (481)
T ss_pred ecc---CceeccccCcc-------hhccccccCCcc-eEEEEeccCceeEeccchhhcceeeee----------cccccc
Confidence 999 88888898887 567778889986 577899999999999999655555555 789999
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.++.|..+. .++++|+|.+|++|+..... .-.+....++|.++++. .+..++---|+.-|++|+
T Consensus 360 VTS~vF~~dd-----------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 360 VTSVVFNTDD-----------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred eeEEEEecCC-----------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEe
Confidence 9999999875 48999999999999986543 33344578999999996 335677777888888875
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.2e-20 Score=150.76 Aligned_cols=254 Identities=12% Similarity=0.077 Sum_probs=174.6
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-ceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
.|..-|.++.|. .+++++++++|++|+|||... .........-+.|.+.|..+.|- |+.+++|+.|+++.+|.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 566779999999 999999999999999999752 23333333334799999999997 999999999999999975
Q ss_pred CC------C-ceE-EEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeE------EecccCCCC
Q 019258 143 IG------G-GEF-KRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ------FKGNFGSQG 205 (343)
Q Consensus 143 ~~------~-~~~-~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~ 205 (343)
.. + .-. +..+....+ .|++++|.| +-.+++++.||.||||+.-. +.. +.+ +.......+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d--p~n-Ls~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPD--PMN-LSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred cccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCC--ccc-cccchhhhhhhhccCCcc
Confidence 21 1 111 122222333 799999999 66799999999999998754 211 111 110000011
Q ss_pred CcccCeEEEEEcCCC--CeEEEEEecC-----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 206 KASGMIHSVDIHPSR--KHTCLAGGSS-----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~--~~~~~sg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
.+..+-.|+.|+|.. +.+||.|+.+ +.++||............ .....|..+|.+|+|.|.-..
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv-------a~L~d~~dpI~di~wAPn~Gr-- 237 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV-------AELPDHTDPIRDISWAPNIGR-- 237 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee-------hhcCCCCCcceeeeeccccCC--
Confidence 122668899999864 4567777766 479999765433111111 012579999999999997442
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCc------------------cc----ccccccccceeeecCCCCCeeEEccCCce
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEP------------------FE----LLAEPCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~------------------~~----~~~~~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
..-.|++++.|| |++|+-.... .+ +-.+.+.|.++.|+= .|..|.+++|||.
T Consensus 238 ----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~ 311 (361)
T KOG2445|consen 238 ----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGC 311 (361)
T ss_pred ----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCce
Confidence 222688999999 9998754210 01 111236788888875 5799999999999
Q ss_pred EEEEe
Q 019258 337 IAIVS 341 (343)
Q Consensus 337 i~~~~ 341 (343)
+++|+
T Consensus 312 VRLWk 316 (361)
T KOG2445|consen 312 VRLWK 316 (361)
T ss_pred eeehh
Confidence 99986
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-19 Score=162.65 Aligned_cols=281 Identities=16% Similarity=0.114 Sum_probs=204.2
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
.+..|.+|+++. +.+.||.+=.|+. |++|++...-..++.-..+....|.+++|+++..|++.+.+|.|.-
T Consensus 24 ~Ps~I~slA~s~----kS~~lAvsRt~g~-----IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 24 KPSEIVSLAYSH----KSNQLAVSRTDGN-----IEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITE 94 (691)
T ss_pred eccceEEEEEec----cCCceeeeccCCc-----EEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEE
Confidence 346788888888 5555777766654 8899996543323333335567899999998899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-EEEcCCCccceEEEEeCC-CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK-RVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||+.+........ ...+.|.+++.+ +..++.+++||.+...+...++-.. +.+....+ .+.+++|++ ...++
T Consensus 95 wDl~~lk~~~~~d---~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s-RvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 95 WDLHTLKQKYNID---SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS-RVLSLSWNPTGTKIA 170 (691)
T ss_pred EecccCceeEEec---CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc-eEEEEEecCCccEEE
Confidence 9998655443332 245789999999 7888899999988888877764222 33333333 799999999 66799
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecc-cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGN-FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+|+.||.|++||... +..+...... .+..+-...-|.++.+-.+ ..+++|.+-|+|++||...+.....+
T Consensus 171 ~Gs~Dg~Iriwd~~~---~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~---- 241 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKS---GQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH---- 241 (691)
T ss_pred ecccCceEEEEEcCC---CceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh----
Confidence 999999999999988 5554421110 0001101145888888754 35789999999999999876554443
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-cccc-----cccccceeeecCCCC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLA-----EPCAINSFDIDPQNP 325 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~-----~~~~i~s~~~~~~~~ 325 (343)
..|.+.|.+|+..+++. .+++++.|+.|..+....... +... +...|.++++.+
T Consensus 242 -------~~h~adVl~Lav~~~~d----------~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--- 301 (691)
T KOG2048|consen 242 -------SCHDADVLALAVADNED----------RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--- 301 (691)
T ss_pred -------hhhhcceeEEEEcCCCC----------eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---
Confidence 46899999999998877 799999999998876543321 2222 245799999998
Q ss_pred CeeEEccCCceEEE
Q 019258 326 SDVICSLEWESIAI 339 (343)
Q Consensus 326 ~~l~~~~~~~~i~~ 339 (343)
..+++|+.|..+++
T Consensus 302 ~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 302 NALISGGRDFTLAI 315 (691)
T ss_pred ceEEecceeeEEEE
Confidence 69999999977765
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=4.9e-21 Score=165.09 Aligned_cols=241 Identities=20% Similarity=0.209 Sum_probs=178.1
Q ss_pred CCCCeeEEEcc--CC-CeEEEEcCCCcEEEEEccCcee--eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEE
Q 019258 70 PPTRISSLSTS--HQ-SLVAASTLSGSLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 70 ~~~~v~~v~~~--~~-~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd 141 (343)
+.++|++++|+ .+ .++++|...|.|-+|++..++. -.+.. ...|.++|.++.|+ ...+++.|.||++++-|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeeeccCceeeeee
Confidence 46789999999 44 7888999999999999952211 11122 23699999999998 67899999999999999
Q ss_pred CCCCceEEEEEcC-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 142 VIGGGEFKRVYDG-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+++.. ...++.. .....+..+.|+. ...++.+..=|...+||+|. .+.....+..|. ..|++++++|.
T Consensus 264 ~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~--~~s~~~~~~lh~-------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 264 FEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT--DGSEYENLRLHK-------KKITSVALNPV 333 (498)
T ss_pred ecchh-hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec--CCccchhhhhhh-------cccceeecCCC
Confidence 98852 3333322 1223577788877 66788888877999999999 455555666555 56999999999
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeee--eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIV--LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
.++++++++-|++++|||+|+...... +. ...|.-.|.+..|+|.+. .|++.+.|.+|+
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls---------t~~HrrsV~sAyFSPs~g----------tl~TT~~D~~IR 394 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLS---------TLPHRRSVNSAYFSPSGG----------TLLTTCQDNEIR 394 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCccee---------cccccceeeeeEEcCCCC----------ceEeeccCCceE
Confidence 999999999999999999987543221 21 146999999999999988 699999999999
Q ss_pred EEecC-----CCcccccccc------cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 298 VVEQG-----EEPFELLAEP------CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 298 ~~~~~-----~~~~~~~~~~------~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+.. .++.....+. -..-.-.|+| +..+++.|.--..|.|++
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCC-CccEEEEeccCcceeEEc
Confidence 99973 2333223221 1233346777 347777777667777765
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=168.54 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=197.8
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEccCCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d 91 (343)
.|+-|..--..|+|-| ++++++|++.|+. +++|+...+ +.++.+. .+...|.+++.. ..+|++|+.+
T Consensus 8 lRyaht~G~t~i~~d~----~gefi~tcgsdg~-----ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~-s~~f~~~s~~ 75 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDP----DGEFICTCGSDGD-----IRKWKTNSDEEEPETID--ISGELVSSIACY-SNHFLTGSEQ 75 (933)
T ss_pred chhhccCceEEEEEcC----CCCEEEEecCCCc-----eEEeecCCcccCCchhh--ccCceeEEEeec-ccceEEeecc
Confidence 3456666688999999 8999999999976 569988543 3332222 155677777765 5699999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
++|.+|.+...+.-.+... -+-++++++++ |++++.||.|-.|++-++.... ....+.+|+. +|.++.|+| .
T Consensus 76 ~tv~~y~fps~~~~~iL~R---ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a-pVl~l~~~p~~ 150 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILAR---FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA-PVLQLSYDPKG 150 (933)
T ss_pred ceEEEeeCCCCCccceeee---eeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCC-ceeeeeEcCCC
Confidence 9999999985543322221 23477888888 8899999999999999998874 4555677877 899999999 7
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc-ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA-SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+.|++.+-||.|++||+.. +.....+.+.....+.. ...+..++|+|++..+ +..+.|+.|++|+....+....+
T Consensus 151 ~fLAvss~dG~v~iw~~~~---~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQD---GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CEEEEEecCceEEEEEccc---chhhhhcccCCccccccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeheee
Confidence 7788888899999999987 55555555443222222 3567889999997665 56678899999998776655555
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQ 323 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~ 323 (343)
.. ..+...+..++|+|.+. +|++++.||.|.+||... .+.......|-.++|.|+
T Consensus 227 r~---------~~~ss~~~~~~wsPnG~----------YiAAs~~~g~I~vWnv~t--~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 227 RD---------KLSSSKFSDLQWSPNGK----------YIAASTLDGQILVWNVDT--HERHEFKRAVCCEAWKPN 281 (933)
T ss_pred cc---------cccccceEEEEEcCCCc----------EEeeeccCCcEEEEeccc--chhccccceeEEEecCCC
Confidence 42 23445599999999987 899999999999999864 222112345677777763
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.4e-22 Score=180.77 Aligned_cols=220 Identities=20% Similarity=0.244 Sum_probs=178.9
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.-.+.+++-.. ..+.+++|++|..++ +|...... ++.. ..|.++|-++.|. .+.+|++|+.+|+|
T Consensus 27 hsaav~~lk~~~----s~r~~~~Gg~~~k~~-----L~~i~kp~---~i~S~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 27 HSAAVGCLKIRK----SSRSLVTGGEDEKVN-----LWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhceeeeec----cceeeccCCCceeec-----cccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCce
Confidence 455677777644 678999999996655 88885532 2333 6799999999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||+.....+ +...+|...+.+++|+ +.++++++.|+-+++||++.. -+...+..|.. .+..+.|.| +..+
T Consensus 95 K~wDleeAk~v---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~-vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 95 KVWDLEEAKIV---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTR-VVDVLRLSPDGRWV 169 (825)
T ss_pred eeeehhhhhhh---hhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcc-eeEEEeecCCCcee
Confidence 99999844333 3445799999999999 889999999999999999865 26667777655 789999999 7799
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+.++.|.+++|||++. ++.+..|+.|+ +.+.++.|||.. .++++|+.|++|++||+++.+.....
T Consensus 170 ~~g~ed~tvki~d~~a---gk~~~ef~~~e-------~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~---- 234 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTA---GKLSKEFKSHE-------GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSG---- 234 (825)
T ss_pred eccCCcceeeeecccc---ccccccccccc-------ccccccccCchh-hhhccCCCCceeeeeccceeEEeecc----
Confidence 9999999999999999 88888898887 789999999975 68899999999999999874332221
Q ss_pred CCcccccCCccccEEEEEEeecCC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
......|.++.|+|++.
T Consensus 235 -------~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 235 -------KPETDGVRSLAFNPDGK 251 (825)
T ss_pred -------CCccCCceeeeecCCce
Confidence 33467899999999976
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=8.5e-21 Score=171.64 Aligned_cols=242 Identities=18% Similarity=0.133 Sum_probs=188.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc----CCCeEEEEcCCCcEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS----HQSLVAASTLSGSLH 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s~dg~v~ 95 (343)
-|.+|+-+| ++.+||+|-..++ |+++++.+-.. ....-.|+.+|.|+.|+ ...+|++++.|..|+
T Consensus 461 G~R~~~vSp----~gqhLAsGDr~Gn-----lrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 461 GFRALAVSP----DGQHLASGDRGGN-----LRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred ceEEEEECC----CcceecccCccCc-----eEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 488999999 8999998855443 78999954222 23345689999999999 457899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--C--CEEEEEeCCCcEEEEECCC----CceEEEEEcCCCccceEEEEeCC
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--G--SECVSVGEDGRVNLVSVIG----GGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~--~~~~s~s~dg~v~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
|||+..+ ..+......|...|+++.|- | ...++||.|..+ +++..+ +....+....-....++.++..|
T Consensus 530 V~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 530 VYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred EEecccc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCC
Confidence 9999743 23333445799999999997 3 578999999855 455543 21111111111122699999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..++++++.|+.|+|||+.. ++..+.|++..++. +..-.+..+|.+- ++++.+.|.++.++|+-+++....
T Consensus 607 ~~k~v~t~cQDrnirif~i~s---gKq~k~FKgs~~~e----G~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIES---GKQVKSFKGSRDHE----GDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred CcceEEEEecccceEEEeccc---cceeeeecccccCC----CceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhh
Confidence 88999999999999999999 89899999887655 6688899999985 468899999999999998776555
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
. .+|...|+.|.|.+|-. +|++.+.||+|.+|+....
T Consensus 679 m-----------~GHsE~VTG~kF~nDCk----------HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 M-----------TGHSEAVTGVKFLNDCK----------HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred h-----------cCcchheeeeeecccch----------hheeecCCceEEEEECchh
Confidence 4 46999999999999987 8999999999999997643
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=167.96 Aligned_cols=256 Identities=15% Similarity=0.181 Sum_probs=181.4
Q ss_pred cccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 12 VHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 12 ~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
+..+ -|-..|..+.|.| ....||+++.|.+ ++.||+......-.-..++|.+.|-+++|. +...|++|
T Consensus 93 lk~~~aH~nAifDl~wap----ge~~lVsasGDsT-----~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP----GESLLVSASGDST-----IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred hcccccccceeEeeccCC----CceeEEEccCCce-----eeeeeeccceeecceeecccccccchhhhccCCCcceeec
Confidence 4444 3777899999999 6778999999975 669999654322222357899999999999 88899999
Q ss_pred cCCCcEEEEEccCce-----e---------------eee----eccCCccccC----eEEEEec-CCEEEEEeC-CCcEE
Q 019258 89 TLSGSLHVLSSAMQV-----L---------------LSV----DENSGFHVGP----ISGVDLT-GSECVSVGE-DGRVN 138 (343)
Q Consensus 89 s~dg~v~v~~~~~~~-----~---------------~~~----~~~~~~h~~~----v~~~~~~-~~~~~s~s~-dg~v~ 138 (343)
+.||.|.|||++... + ... .+...+|... |+.+.|- ...|+++|. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999986211 0 000 0001123233 4445554 788999887 99999
Q ss_pred EEECCCCceEEEE-------EcCC--CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCC-CCeeEEecccCCCCCc
Q 019258 139 LVSVIGGGEFKRV-------YDGN--GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKA 207 (343)
Q Consensus 139 ~wd~~~~~~~~~~-------~~~~--~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~ 207 (343)
+||++......+. +..+ ....+.++.... +.++++.+.|+.|.+|+++. .. .++..+.++..
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s--~s~sP~~~~sg~~~----- 316 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS--LSISPVAEFSGKLN----- 316 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc--cCcCchhhccCccc-----
Confidence 9999874322111 1111 122467777666 67777777799999999987 22 23334443321
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
...-..-..+|++.. +++|+.|+..++|.+.+.+.+...+ .+|.-.|..|+|.|.... -+
T Consensus 317 ~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~~l----------~Ght~eVt~V~w~pS~~t---------~v 376 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPALL----------LGHTREVTTVRWLPSATT---------PV 376 (720)
T ss_pred ceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChhhh----------hCcceEEEEEeeccccCC---------Cc
Confidence 011222345788765 5799999999999999988888877 789999999999998776 89
Q ss_pred EEEecCCeEEEEecCC
Q 019258 288 MFCSEDGILAVVEQGE 303 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~ 303 (343)
++||+|-++.+|+...
T Consensus 377 ~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999998643
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.8e-20 Score=166.48 Aligned_cols=278 Identities=15% Similarity=0.119 Sum_probs=203.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.|...|.+|.-.| .+.+|++||.|++ +++|.+.+ ..|+..++..+.|.|++|+ +-..|+++.. .
T Consensus 398 GHtg~Vr~iSvdp----~G~wlasGsdDGt-----vriWEi~T---gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~ 464 (733)
T KOG0650|consen 398 GHTGLVRSISVDP----SGEWLASGSDDGT-----VRIWEIAT---GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-E 464 (733)
T ss_pred ccCCeEEEEEecC----CcceeeecCCCCc-----EEEEEeec---ceEEEEEeecceeEEEEecCCCCceeEEEEec-C
Confidence 3677899999999 8999999999976 77999954 6788888899999999999 3334444443 3
Q ss_pred cEEEEEccCc---------eee-----------eeeccC--------------CccccCeEEEEec--CCEEEEEeCC--
Q 019258 93 SLHVLSSAMQ---------VLL-----------SVDENS--------------GFHVGPISGVDLT--GSECVSVGED-- 134 (343)
Q Consensus 93 ~v~v~~~~~~---------~~~-----------~~~~~~--------------~~h~~~v~~~~~~--~~~~~s~s~d-- 134 (343)
.+.|.+..-+ +.+ .+..|. -.|..+|..+.|+ |.+|++...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3555443100 000 000111 1266789999999 9999988764
Q ss_pred -CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE
Q 019258 135 -GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH 212 (343)
Q Consensus 135 -g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (343)
..|.+.++...+....+...++ .+.++.|+| ..+|+.++ ...|++||+.. ...+..+.... .+|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvKkL~tg~-------kwiS 611 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVKKLLTGS-------KWIS 611 (733)
T ss_pred cceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHHHHhcCC-------eeee
Confidence 4688899876532222212233 599999999 55566554 67899999987 56665554333 6799
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 213 SVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.++.||.|.+++ .|+.|+.+..+|+.-..+|...+ ..|+..+.+|+||+.-+ ++++||.
T Consensus 612 ~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~l----------r~H~~avr~Va~H~ryP----------Lfas~sd 670 (733)
T KOG0650|consen 612 SMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTL----------RLHEKAVRSVAFHKRYP----------LFASGSD 670 (733)
T ss_pred eeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHh----------hhhhhhhhhhhhccccc----------eeeeecC
Confidence 999999998875 68999999999998888888877 78999999999999888 8999999
Q ss_pred CCeEEEEecC---C---C----cccccccc-----cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 293 DGILAVVEQG---E---E----PFELLAEP-----CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 293 dg~i~~~~~~---~---~----~~~~~~~~-----~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||++.++... . . +...+..+ ..|....|||.. .+|++++.++.|++|+
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence 9999886531 1 1 11222222 347777899954 8999999999999985
No 138
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.86 E-value=2.9e-21 Score=155.49 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=158.8
Q ss_pred CeeEEEccCCCeEEEEcCCCcEEEEEccCceee------------eeeccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 73 RISSLSTSHQSLVAASTLSGSLHVLSSAMQVLL------------SVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 73 ~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
.+..+.++.+..|+++..++.+..+........ .... .....++...+...+..++++..||.+.+.
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeee-ccCCCCCcccccccCCceEecCCCceEEEE
Confidence 377777777788888888877766655322111 1111 111123445555558889999999999999
Q ss_pred ECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+.+.-....+.+..... .--+.++.....++.++.- +..+.|+++. +.++....... ..|+++
T Consensus 117 s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p------~~t~~~~~~~~----~~v~~l 185 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP------IKTLIPSKKAL----DAVTAL 185 (319)
T ss_pred echHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccc------ccccccccccc----ccchhh
Confidence 98763222222211111 1222222232334444443 4455566544 33332222111 449999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
+-||..++++++|++||.+-+||+|+...|..++ .+|+.+|+.|.|||.++. .|++||+||
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l----------~ahk~~i~eV~FHpk~p~---------~Lft~sedG 246 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL----------KAHKAEIWEVHFHPKNPE---------HLFTCSEDG 246 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHH----------HHhhhhhhheeccCCCch---------heeEecCCC
Confidence 9999999999999999999999999998898888 899999999999999998 999999999
Q ss_pred eEEEEecCCCc-----------ccc--------------ccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEP-----------FEL--------------LAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~-----------~~~--------------~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+|.|+..... .|+ +++ ...||+||+.+ ..|+||+|.+.||++.
T Consensus 247 slw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g---~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 247 SLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLG---PCLVCGTDAEAIYLTR 316 (319)
T ss_pred cEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccC---ceEEeccccceEEEec
Confidence 99999975211 111 111 25799999997 8999999999999975
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=156.22 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=200.7
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCC-eEEEEcCCCcE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQS-LVAASTLSGSL 94 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~-~l~~~s~dg~v 94 (343)
...|++|.|+| ....+++++.|+. ++|+.+..+... .+.++.. ..+|.+..|. ++. .+++++.-..+
T Consensus 213 ~~~I~sv~FHp----~~plllvaG~d~~-----lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHP----TAPLLLVAGLDGT-----LRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecC----CCceEEEecCCCc-----EEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 35799999999 7788999999975 779999665433 2333333 4689999999 555 89999999999
Q ss_pred EEEEccCceeeeeeccCCccc-cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHV-GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+.||+...+...+.... ++. ..+..+.++ ++.++..|..|.|.+.-..++. ....+.-.. .+..++|+. +..
T Consensus 283 ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~KieG--~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIEG--VVSDFTFSSDSKE 358 (514)
T ss_pred EEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheeeecc--EEeeEEEecCCcE
Confidence 99999754433332222 232 345566666 8899999999999999888874 444443333 489999988 888
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC-----Cceee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW-----QQQSI 245 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~-----~~~~~ 245 (343)
+++.+.+|.|.+||+++ ...+..+....+ -.-++++.++++. +||+|++.|.|.|||..+ ..+|+
T Consensus 359 l~~~~~~GeV~v~nl~~---~~~~~rf~D~G~------v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQ---NSCLHRFVDDGS------VHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred EEEEcCCceEEEEecCC---cceEEEEeecCc------cceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCch
Confidence 99999999999999999 666666653321 2245667678776 679999999999999643 22333
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe--cCCeEEEEecCCC-ccccccc----cccccee
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS--EDGILAVVEQGEE-PFELLAE----PCAINSF 318 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s--~dg~i~~~~~~~~-~~~~~~~----~~~i~s~ 318 (343)
... ..-...|..|+|+|+.+ .|+-|| .+..+++..-... .+.-.+. -.-+.++
T Consensus 429 k~~----------dNLtt~Itsl~Fn~d~q----------iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 429 KTV----------DNLTTAITSLQFNHDAQ----------ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred hhh----------hhhheeeeeeeeCcchh----------hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 332 23467899999999987 455554 5567877654321 1111111 2568999
Q ss_pred eecCCCCCeeEEccCCceEEEEe
Q 019258 319 DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+| ++.+++.|.+++++.+|+
T Consensus 489 aFSP-~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 489 AFSP-NSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred EecC-CCceEEeecCCCceeeEe
Confidence 9999 679999999999999997
No 140
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1e-19 Score=148.66 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=179.5
Q ss_pred eeeCCCC-CCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCC-------CcEEEEEccCcee------ee-eeccCCccc
Q 019258 53 THSISLP-ASLTPHSQWTPPTRISSLSTS--HQSLVAASTLS-------GSLHVLSSAMQVL------LS-VDENSGFHV 115 (343)
Q Consensus 53 ~w~~~~~-~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~d-------g~v~v~~~~~~~~------~~-~~~~~~~h~ 115 (343)
+..+..+ ....+...+-+.++|..++-+ +...|++...+ -.+.||.+.+.-. +. +......+.
T Consensus 44 ll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 44 LLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV 123 (370)
T ss_pred EEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh
Confidence 5555433 223334445667999999988 66667666541 2467999873211 11 112223466
Q ss_pred cCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCC---ccceEEEEeCC--CCEEEEEeCCCcEEEEEccc
Q 019258 116 GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNG---LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 116 ~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~---~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~ 187 (343)
+.|.|+.|. +..+++.. |..|.+|++...+. +..+..... ....++-+|+| ....+....|+++..||+|+
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 799999998 66777665 78899999987644 222221111 11477888998 44455566799999999998
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.++...+...++ ..+..++|+|+.++++++|++||.|++||.|+...|+..+ .+|...||+
T Consensus 203 ---~~~~~sI~dAHg------q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----------~~HsHWvW~ 263 (370)
T KOG1007|consen 203 ---MKKNNSIEDAHG------QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----------PGHSHWVWA 263 (370)
T ss_pred ---hhhhcchhhhhc------ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----------CCCceEEEE
Confidence 666666654443 4599999999999999999999999999999999999888 889999999
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc------------------------------cccccc-ccccc
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------------------------------FELLAE-PCAIN 316 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------------------------------~~~~~~-~~~i~ 316 (343)
|.|+|.... .++++|.|..+.+|-...-. .+.+.+ ...|+
T Consensus 264 VRfn~~hdq---------LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 264 VRFNPEHDQ---------LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred EEecCccce---------EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 999998776 88999999999887532100 011111 25799
Q ss_pred eeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 317 SFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 317 s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
+++|+.-+ .+++++ +=||++.|-+
T Consensus 335 ~~aWSsad-PWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 335 ALAWSSAD-PWIFASLSYDGRVIISS 359 (370)
T ss_pred EEeeccCC-CeeEEEeccCceEEeec
Confidence 99999755 555554 4466666544
No 141
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=7.1e-20 Score=168.65 Aligned_cols=266 Identities=17% Similarity=0.144 Sum_probs=190.9
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee--e-eeeccCCccccCeEEEEec-
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL--L-SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~--~-~~~~~~~~h~~~v~~~~~~- 124 (343)
+-+|++..+ ..+...+..+.+|.+++|+ ++.+++.|+.+|.|.+||+..... . .+......|..+|+.+.|.
T Consensus 224 ~~vW~~~~p--~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 224 LLVWSLKNP--NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred EEEEecCCC--CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 679999664 4456667778899999999 889999999999999999984433 2 2222344689999999997
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCceEEEEE----------cCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccC
Q 019258 125 ---GSECVSVGEDGRVNLVSVIGGGEFKRVY----------DGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 125 ---~~~~~s~s~dg~v~~wd~~~~~~~~~~~----------~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
+..|++++.||.|..|+++.-..+.... .......+++++|.+ .+.|+.|+.+|.|.--.-.. -
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g-~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG-Y 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC-C
Confidence 5569999999999999987632211110 112234689999998 78899999999887632211 0
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
...+...++.+.. -..+.++|+++.++|....+|++++ |.+|+||.......|.... ..+...|.+++
T Consensus 381 ~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~----------~~~~~~v~~va 448 (555)
T KOG1587|consen 381 TPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL----------DSSPDYVTDVA 448 (555)
T ss_pred ccccccccccccc-ccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh----------hhccceeeeeE
Confidence 0111111222211 1123388999999999988888877 9999999987446666655 45667799999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCC---cc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE---PF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~---~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|+|..+. .++++..||.|.+||.... +. .........+.+-+++ +|..|++|.+.|.+++++
T Consensus 449 WSptrpa---------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 449 WSPTRPA---------VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCcCce---------EEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 9999997 8888899999999996432 21 1111234455566665 679999999999999986
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.2e-22 Score=179.09 Aligned_cols=236 Identities=15% Similarity=0.205 Sum_probs=187.5
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCE
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSE 127 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~ 127 (343)
|++|+.. ....|...|.++..- ..+.+++|+.|-.+-+|.+.....+.. ..+|..+|.++.++ ...
T Consensus 16 Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 16 LRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERL 84 (825)
T ss_pred cccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---eeccCCcceeeecCcchhh
Confidence 6677772 244677778887765 668899999999999998875443322 34799999999999 667
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 128 CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 128 ~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
+++|+.+|+|++||++..+.++ .+-+|.. .+..+.|+| ..+++.++.|..+++||.|. ..+...+.+|.
T Consensus 85 laagsasgtiK~wDleeAk~vr-tLtgh~~-~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~----- 154 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVR-TLTGHLL-NITSVDFHPYGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHT----- 154 (825)
T ss_pred hcccccCCceeeeehhhhhhhh-hhhcccc-CcceeeeccceEEeccccccccceehhhhc---cCceeeecCCc-----
Confidence 7889999999999999986444 4455655 799999999 77888899999999999997 67888888765
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..+..+.|.|+|++ ++.|++|..+++||++.+.....+ ..|++.+..+.|||..- .
T Consensus 155 --~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~~~ef-----------~~~e~~v~sle~hp~e~----------L 210 (825)
T KOG0267|consen 155 --RVVDVLRLSPDGRW-VASGGEDNTVKIWDLTAGKLSKEF-----------KSHEGKVQSLEFHPLEV----------L 210 (825)
T ss_pred --ceeEEEeecCCCce-eeccCCcceeeeeccccccccccc-----------ccccccccccccCchhh----------h
Confidence 66999999999875 589999999999999886544443 56999999999999876 7
Q ss_pred eEEEecCCeEEEEecC-CCccc-ccccccccceeeecCCCCCeeEEcc
Q 019258 287 AMFCSEDGILAVVEQG-EEPFE-LLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~-~~~~~-~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
+.+||.|+++++|+.. .+.+. .-.+...|.+..+++ ++..+.||.
T Consensus 211 la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~ 257 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGE 257 (825)
T ss_pred hccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCc
Confidence 9999999999999975 33222 222356799999998 668888775
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.6e-20 Score=158.53 Aligned_cols=229 Identities=15% Similarity=0.076 Sum_probs=167.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
--+.+|++++-+| .+.+++.|.--+. |.+|.++...-... ...|-..|+++.|+ ++.+|++|+.||.|
T Consensus 79 v~Pg~v~al~s~n----~G~~l~ag~i~g~-----lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 79 VLPGPVHALASSN----LGYFLLAGTISGN-----LYLWELSSGILLNV--LSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred ccccceeeeecCC----CceEEEeecccCc-----EEEEEeccccHHHH--HHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 3445688888888 7888877644433 77999976432221 24678899999999 99999999999999
Q ss_pred EEEEccC------ceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 95 HVLSSAM------QVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 95 ~v~~~~~------~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
.+|.+.. ............|+-+|+++... ...++|+|.|.++++||+..+. +...+.... .+.++.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp~--si~av~ 224 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFPS--SIKAVA 224 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEecCC--cceeEE
Confidence 9998851 11222233334699999999987 4689999999999999999995 444444444 599999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCC-------------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGS-------------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..| ...+..|+.+|.|.+.++....+ +..+..+.+|.+ ..+|+|++++-++. ++++|++|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-----~~~ITcLais~Dgt-lLlSGd~d 298 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-----ESAITCLAISTDGT-LLLSGDED 298 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC-----CcceeEEEEecCcc-EEEeeCCC
Confidence 999 88899999999999988765110 011222333331 14899999999875 77899999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|+|++||....+....+. ...++|+.+++.|-.+
T Consensus 299 g~VcvWdi~S~Q~iRtl~-----------~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQ-----------TSKGPVTNLQINPLER 332 (476)
T ss_pred CCEEEEecchHHHHHHHh-----------hhccccceeEeecccc
Confidence 999999998755444433 1467889999876544
No 144
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=163.05 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=190.7
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCc
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
.+.+++.+ ++.+|++|..-|.++||++.+.+.+.. ..+|...|.|+.++ .+.|++++.|..|.++|+...-
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 48899999 999999999999999999985444433 33799999999998 5678999999999999998764
Q ss_pred eEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
.+...++.|.+ .|++++|.. +..+++++.|+.|.+ +..+ .......|..+...- ...-+..++..|... +
T Consensus 538 ~l~qtld~HSs-sITsvKFa~~gln~~MiscGADksimF-r~~q--k~~~g~~f~r~t~t~--~ktTlYDm~Vdp~~k-~ 610 (1080)
T KOG1408|consen 538 DLVQTLDGHSS-SITSVKFACNGLNRKMISCGADKSIMF-RVNQ--KASSGRLFPRHTQTL--SKTTLYDMAVDPTSK-L 610 (1080)
T ss_pred chhhhhccccc-ceeEEEEeecCCceEEEeccCchhhhe-ehhc--cccCceecccccccc--ccceEEEeeeCCCcc-e
Confidence 56677777776 899999976 468999999998874 3333 122222333222111 115689999999865 5
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec--
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ-- 301 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~-- 301 (343)
++++++|+.|+|||+.++.+...+.+. +.|++....|...|.+. ++++...|.+|.++|.
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs--------~~~eG~lIKv~lDPSgi----------Y~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGS--------RDHEGDLIKVILDPSGI----------YLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EEEEecccceEEEeccccceeeeeccc--------ccCCCceEEEEECCCcc----------EEEEeecCCceEEEEecc
Confidence 689999999999999987776666532 46888999999999987 8999999999999886
Q ss_pred CCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 302 GEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 302 ~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++-......+...|..+-|.++. +.||+.+.|+-|.||+-|
T Consensus 673 gEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECc
Confidence 44456666778899999999865 999999999999999855
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=162.52 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=160.9
Q ss_pred eEEEcc----CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 75 SSLSTS----HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 75 ~~v~~~----~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
.+..|+ ....|+.+..||.|.++|.... ++.++..+ ..|.+.|..+.|- ...|++++.|.+++.||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 456776 4567899999999999998722 22223333 3799999999998 66789999999999999998
Q ss_pred CceEEEE--EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCC---------------C--CCeeEEecccCC
Q 019258 145 GGEFKRV--YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGS---------------G--GPVLQFKGNFGS 203 (343)
Q Consensus 145 ~~~~~~~--~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~---------------~--~~~~~~~~~~~~ 203 (343)
.. +... +.+|.. .+.+++|.+ ...|++|+.||.|.|||+|.... + .+....+.....
T Consensus 132 s~-l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 132 SR-LVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ce-eecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 74 4333 556666 899999999 78899999999999999986110 0 010000000000
Q ss_pred CCCcccC----eEEEEEcCCCCeEEEEEec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 204 QGKASGM----IHSVDIHPSRKHTCLAGGS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 204 ~~~~~~~----i~~v~~~p~~~~~~~sg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
...+... |+.+.| .+.. .+|+++. |+.|++||+|+...+....-........+..-.-.+.++..+..+..
T Consensus 210 ~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~-- 285 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY-- 285 (720)
T ss_pred cccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe--
Confidence 0011122 444444 4444 4566666 99999999998755443322111111111111234666767666674
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCcccc--ccccccccee----eecCCCCCeeEEccCCceEEEEe
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEPFEL--LAEPCAINSF----DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~--~~~~~~i~s~----~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++|. |+.|+.|+.......- ...++.+.+| ..+| ++.+|++|+.++..|+|.
T Consensus 286 -------L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 286 -------LFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred -------EEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeee
Confidence 556666 9999999975432221 1223444444 3356 469999999999999986
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=9.1e-19 Score=143.57 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=189.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC---------CCCCccC----CCCCCeeEEEcc--
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS---------LTPHSQW----TPPTRISSLSTS-- 80 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---------~~~~~~~----~~~~~v~~v~~~-- 80 (343)
||...|+++..-| ..++++++|+.|+. +.+||++.... .+|.-.. .|.-.|.++.|.
T Consensus 41 ~HgGsvNsL~id~---tegrymlSGgadgs-----i~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL---TEGRYMLSGGADGS-----IAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred cCCCccceeeecc---ccceEEeecCCCcc-----EEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 4666777777777 57899999999975 66999954321 1221122 244569999988
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
+...+.+++.|.+++|||.++.++...... .+.|.+-+++ -..+++|..|-.|++.|+.++. ....+.+|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGH 187 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGH 187 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccc
Confidence 889999999999999999997665544432 2455555555 4567778888899999999994 67777888
Q ss_pred CccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC-------CCCCcccCeEEEEEcCCCCeEEEE
Q 019258 156 GLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG-------SQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 156 ~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
.. .|.++.|+| .-.|++|+.||.|++||+|. ...+...+..|.. ....+.+.++.++|..++.++ ++
T Consensus 188 r~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr--asgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l-~~ 263 (397)
T KOG4283|consen 188 RD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRR--ASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL-AS 263 (397)
T ss_pred cC-ceEEEEeccCceeEEEecCCCceEEEEEeec--ccceeEEeecccCccCccccccccccceeeeeeecccchhh-hh
Confidence 77 899999999 55688899999999999998 2234433333321 011234779999999998765 67
Q ss_pred EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe---ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD---CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.|..+++|+..+++......+. ..|+. -...+++ -+.. .++.--.|+.|.+++..+
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~--------~~~n~-~~~~~~~~~~~~s~----------vfv~~p~~~~lall~~~s 324 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGP--------IIHNQ-TTSFAVHIQSMDSD----------VFVLFPNDGSLALLNLLE 324 (397)
T ss_pred ccCccceEEeecccCccccccccc--------ccccc-cccceEEEeecccc----------eEEEEecCCeEEEEEccC
Confidence 788889999999876543332210 01111 1111111 1111 333444556666655433
Q ss_pred Cc-cccc-ccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 304 EP-FELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 304 ~~-~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
.. ..++ .+-..++...+.|+. +.+.+|.-|+.|+.|
T Consensus 325 gs~ir~l~~h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 325 GSFVRRLSTHLKRINCAAYRPDF-EQCFTGDMNGNIYMW 362 (397)
T ss_pred ceEEEeeecccceeeEEeecCch-hhhhccccCCccccc
Confidence 22 1222 223456666677743 777788888888776
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=1.3e-17 Score=146.47 Aligned_cols=266 Identities=10% Similarity=0.019 Sum_probs=173.9
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeeccCC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDENSG 112 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~ 112 (343)
..+++++.|+. +.+|++.+.. +...+.....+.++.|+ ++..+ ++++.++.|++|+....+......
T Consensus 2 ~~~~s~~~d~~-----v~~~d~~t~~---~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--- 70 (300)
T TIGR03866 2 KAYVSNEKDNT-----ISVIDTATLE---VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--- 70 (300)
T ss_pred cEEEEecCCCE-----EEEEECCCCc---eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---
Confidence 56888888864 7799985432 33444444557789998 66655 567789999999998654433221
Q ss_pred ccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC-cEEEEEccc
Q 019258 113 FHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY-GLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~-~i~iwd~~~ 187 (343)
.+. .+..+.++ ++.++ +++.|+.+++||+.+.+ ....+.... .+.+++|+| +..+++++.++ .+.+||.+.
T Consensus 71 ~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 71 SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 122 24566776 66554 55678999999998874 444443222 367899999 77777777664 567789876
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc--ccE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE--SEV 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~v 265 (343)
.+........ ....+++|+|++..+++++..++.|++||+++.+....+.. ... ..+. ...
T Consensus 147 ---~~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~-----~~~~~~~~~ 209 (300)
T TIGR03866 147 ---YEIVDNVLVD--------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF-EIP-----GVHPEAVQP 209 (300)
T ss_pred ---CeEEEEEEcC--------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee-ccc-----ccccccCCc
Confidence 4444333221 33577999999987767767799999999987644332210 000 0111 123
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
..+.|+|++.. .+++.+.+++|.+|+..... .........+.+++++| +|++|+++ ..++.|.+|+.
T Consensus 210 ~~i~~s~dg~~---------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 210 VGIKLTKDGKT---------AFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cceEECCCCCE---------EEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 46889998874 34555667789999875332 22223345788999999 56888876 45789999863
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=8.7e-19 Score=161.21 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=207.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
|...|....+.| ..+.++|++.|+. .++|+.|..+.. +..+.. -+|..+..++.|. .+..+++++.|++
T Consensus 287 h~~sv~~~~fl~----~epVl~ta~~DnS---lk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 287 HYGSVTGATFLP----GEPVLVTAGADNS---LKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred ccCCcccceecC----CCceEeeccCCCc---eeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 455677777777 7889999999953 345666643332 333333 5788889999998 7778888889998
Q ss_pred EEEEEccC-------ce---------------------ee------------------------eeecc------CCc--
Q 019258 94 LHVLSSAM-------QV---------------------LL------------------------SVDEN------SGF-- 113 (343)
Q Consensus 94 v~v~~~~~-------~~---------------------~~------------------------~~~~~------~~~-- 113 (343)
.+.|.+.. .+ ++ ....| ...
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 88887620 00 00 00000 000
Q ss_pred --cc------cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE---cCCCccceEEEEeCC-CCEEEEEeCCCc
Q 019258 114 --HV------GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY---DGNGLVGFNCVKWAS-PTEFVTGGFGYG 179 (343)
Q Consensus 114 --h~------~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~l~t~~~d~~ 179 (343)
+. ..+++++.+ |+..+.|...|.|-++++.++. .+..+ ..|.. .|++++... +..+++++.+|.
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~~~~ah~~-~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFGDSPAHKG-EVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-eecccccCccccC-ceeEEEecCCCceEEEccCcce
Confidence 11 345666665 8888999999999999999984 55555 24555 899999988 889999999999
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccC
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHS 259 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (343)
+++||+.. ...+.++... ..+.++..|... .+++.+.+|-.|.++|..+... .... .
T Consensus 517 lkfw~f~~---k~l~~~l~l~--------~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv-vR~f----------~ 573 (910)
T KOG1539|consen 517 LKFWDFKK---KVLKKSLRLG--------SSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV-VREF----------W 573 (910)
T ss_pred EEEEecCC---cceeeeeccC--------CCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh-hHHh----------h
Confidence 99999987 4444444432 457788888764 5778899999999999987433 3333 5
Q ss_pred CccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCC-ceE
Q 019258 260 LSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEW-ESI 337 (343)
Q Consensus 260 ~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~-~~i 337 (343)
+|.+.|+++.|+|++. +|++++.|++|++||.... ....+.-+.+..++.++| +|++|+..-.+ ..|
T Consensus 574 gh~nritd~~FS~Dgr----------WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGR----------WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSP-NGDFLATVHVDQNGI 642 (910)
T ss_pred ccccceeeeEeCCCCc----------EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECC-CCCEEEEEEecCceE
Confidence 7999999999999998 8999999999999998533 344444578899999999 78999999877 699
Q ss_pred EEEeC
Q 019258 338 AIVSR 342 (343)
Q Consensus 338 ~~~~~ 342 (343)
|+|.+
T Consensus 643 ylWsN 647 (910)
T KOG1539|consen 643 YLWSN 647 (910)
T ss_pred EEEEc
Confidence 99975
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.3e-18 Score=160.08 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=187.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-eeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-VLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
..|...-+.++|. ++..|+++++||.|++|+.... +...... .+...|.+++..++.|++++.+++|.+|...++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 3566778899998 8889999999999999998744 2222221 266788999988889999999999999999886
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
. ...++..... ++++++++. +..++.|++|-.|++-++.. ......+.+|. ++|.++.|+|++ .++
T Consensus 87 ~-~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D---~s~~~~lrgh~-------apVl~l~~~p~~-~fL 153 (933)
T KOG1274|consen 87 E-EDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---SSQEKVLRGHD-------APVLQLSYDPKG-NFL 153 (933)
T ss_pred C-ccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccc---cchheeecccC-------CceeeeeEcCCC-CEE
Confidence 3 3333322233 689999988 88999999999999999887 56667778776 899999999987 467
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-- 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-- 302 (343)
|+.+-||.|++||+..+.....+-++....- -.....+..++|+|++. .++..+.|++|.+++..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g----------~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGG----------TLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCcccc---ccccceeeeeeecCCCC----------eEEeeccCCeEEEEccCCc
Confidence 8899999999999987654444332221110 11145678999999988 68999999999998763
Q ss_pred CCccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+....+..+ ...+..+.|+| +|.||++++-++.|.||+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred eeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 333444443 34489999999 699999999999999997
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.5e-17 Score=145.30 Aligned_cols=300 Identities=13% Similarity=0.106 Sum_probs=200.4
Q ss_pred ccCCCCccccCC------------cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC
Q 019258 5 GVRTPPQVHRFP------------QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT 72 (343)
Q Consensus 5 ~~~~~~~~~~~~------------~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~ 72 (343)
|.+.||-+..++ ...-|.+|+|++. ++..++..-.|+.... |-+|+-+.+...... -..+.
T Consensus 129 g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~---~~G~~l~~vD~s~~h~--lSVWdWqk~~~~~~v--k~sne 201 (626)
T KOG2106|consen 129 GRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI---NGGSLLCAVDDSNPHM--LSVWDWQKKAKLGPV--KTSNE 201 (626)
T ss_pred CCcCCCeeeecccccceeeeeeccccccceeeeeccc---CCCceEEEecCCCccc--cchhhchhhhccCcc--eeccc
Confidence 455566555565 5677999999994 3433444444443333 346666433222111 12345
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeec-cCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
.|....|+ .+.-|+....-|++..|+.+.+....... ++...+.-|.|++|. +..+++|..+|.|.+|+..+.+-..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe
Confidence 68889999 44445555567899999887543332221 222234679999999 8889999999999999998874344
Q ss_pred EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC---------CCCeeEEe-cccC---------------CC
Q 019258 150 RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS---------GGPVLQFK-GNFG---------------SQ 204 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---------~~~~~~~~-~~~~---------------~~ 204 (343)
... .|.. .|.+++......|++|+.|+.|..||-.- .. ..+++.+. +..+ +.
T Consensus 282 ~~~-aH~g-gv~~L~~lr~GtllSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 282 QVH-AHDG-GVFSLCMLRDGTLLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred Eee-ecCC-ceEEEEEecCccEeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 444 6666 89999999988899999999999998321 00 00111110 0000 00
Q ss_pred ------CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 205 ------GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 205 ------~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
..|......++.+|+.. .+++++.|+.+++|+ ..+...... -+.++-++.|+|.+
T Consensus 359 ~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~~------------~~d~~~~~~fhpsg---- 419 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLEWTKI------------IEDPAECADFHPSG---- 419 (626)
T ss_pred CceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCceeEEEE------------ecCceeEeeccCcc----
Confidence 00115677889999864 568999999999999 223333333 46788899999987
Q ss_pred CCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++.++..|...+.|.... ...+..+..+++.+.++| +|.+++-|+.|+.||+|.
T Consensus 420 -------~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 420 -------VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred -------eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEE
Confidence 3899999999888886433 334444567899999999 789999999999999986
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=2.9e-17 Score=144.23 Aligned_cols=268 Identities=10% Similarity=0.058 Sum_probs=169.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
.+..+.....+..++|+| +++.+ ++++.|+ .+++|++.... ....+.....+..+.|+ +++.++++
T Consensus 23 ~~~~~~~~~~~~~l~~~~----dg~~l~~~~~~~~-----~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 23 VTRTFPVGQRPRGITLSK----DGKLLYVCASDSD-----TIQVIDLATGE---VIGTLPSGPDPELFALHPNGKILYIA 90 (300)
T ss_pred eEEEEECCCCCCceEECC----CCCEEEEEECCCC-----eEEEEECCCCc---EEEeccCCCCccEEEECCCCCEEEEE
Confidence 344444445577899999 66655 5666554 37799986532 22223333445678888 66666554
Q ss_pred -cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC-cEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 89 -TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG-RVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 89 -s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg-~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
..++.+++||+...+.+.... +...+.++.++ +..+++++.++ .+.+||..+.+...... ... ....+.
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~--~~~~~~ 163 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ--RPRFAE 163 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEee----CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC--CccEEE
Confidence 568999999998654443322 22345778887 77888887765 46778988774333332 222 367789
Q ss_pred eCC-CCEEEEE-eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 165 WAS-PTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 165 ~~~-~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
|++ +..++++ ..++.|++||++. ++.+..+................++++|++..++++.+.++.+.+||+++.+
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 998 6666444 4599999999988 5555554322100000002245688999998777766677889999998754
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecCCCc-ccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQGEEP-FELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~ 320 (343)
...... +...+.++.|+|++. .|+++ +.+|.|.+|+..... ...+......+++++
T Consensus 241 ~~~~~~------------~~~~~~~~~~~~~g~----------~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 241 VLDYLL------------VGQRVWQLAFTPDEK----------YLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred EEEEEE------------eCCCcceEEECCCCC----------EEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 332222 335688999999988 56665 579999999986432 232333444477766
Q ss_pred cC
Q 019258 321 DP 322 (343)
Q Consensus 321 ~~ 322 (343)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 53
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.8e-18 Score=151.48 Aligned_cols=243 Identities=15% Similarity=0.140 Sum_probs=176.5
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceE
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
+.+|.+|+|+ ..+.||++-.+|.|.+|++....... ......-.+.|.+++|. +..|.|.+.+|.|.-||+.+.+ +
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-Q 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee-EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-e
Confidence 5789999999 77889999999999999998543221 11111234679999999 9999999999999999999985 4
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...++.... .|++++.+| +..++.|++||.+..++... ..+.-......++ +.+.+++|+|++.. +++|
T Consensus 103 ~~~~d~~gg-~IWsiai~p~~~~l~IgcddGvl~~~s~~p----~~I~~~r~l~rq~----sRvLslsw~~~~~~-i~~G 172 (691)
T KOG2048|consen 103 KYNIDSNGG-AIWSIAINPENTILAIGCDDGVLYDFSIGP----DKITYKRSLMRQK----SRVLSLSWNPTGTK-IAGG 172 (691)
T ss_pred eEEecCCCc-ceeEEEeCCccceEEeecCCceEEEEecCC----ceEEEEeeccccc----ceEEEEEecCCccE-EEec
Confidence 444454444 799999999 78888888999666666543 2222211111111 77999999999865 4799
Q ss_pred ecCCcEEEEEccCCceee-eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 228 GSSGTVFAWDLRWQQQSI-VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
+.||.|++||..++.... ..++.+.- .+....-||+|.|-.++ .+++|..-|+|..||......
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l----~k~~~~iVWSv~~Lrd~-----------tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRL----SKREPTIVWSVLFLRDS-----------TIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeeccccc----ccCCceEEEEEEEeecC-----------cEEEecCCceEEEEcccCcch
Confidence 999999999998865433 11111100 02245568999999765 589999999999999865432
Q ss_pred --cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 --ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 --~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
....+...|.++++++ +.+.|+|++-|+.|--+.
T Consensus 238 iqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEE
Confidence 2222357899999998 458999999888776543
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-19 Score=158.19 Aligned_cols=244 Identities=14% Similarity=0.116 Sum_probs=184.2
Q ss_pred CCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce---eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcE
Q 019258 64 PHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV---LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRV 137 (343)
Q Consensus 64 ~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~---~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v 137 (343)
.+.++.|..-|.++..+ ..+++++| .-|.|+|||+.... ++...... .-...|.++... +..|++|+.-.+|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEecccccee
Confidence 35566777778888888 55666665 56779999997332 11111111 022356666665 8999999999999
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+||+.....-....-......+++++.+| .+..+++..||.|.|||++. ...+.+|.+|. +-+.||++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn---q~~VrqfqGht-------DGascIdi 559 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---QTLVRQFQGHT-------DGASCIDI 559 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---ceeeecccCCC-------CCceeEEe
Confidence 999997753212111111122578889999 88899999999999999999 77788899887 66999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+++|..+ -+|+-|.+|+.||+|+++++.... ....|.++-++|++. +|+.|-+.+.+
T Consensus 560 s~dGtkl-WTGGlDntvRcWDlregrqlqqhd------------F~SQIfSLg~cP~~d----------WlavGMens~v 616 (705)
T KOG0639|consen 560 SKDGTKL-WTGGLDNTVRCWDLREGRQLQQHD------------FSSQIFSLGYCPTGD----------WLAVGMENSNV 616 (705)
T ss_pred cCCCcee-ecCCCccceeehhhhhhhhhhhhh------------hhhhheecccCCCcc----------ceeeecccCcE
Confidence 9999765 699999999999999987766543 678999999999988 89999999999
Q ss_pred EEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++...... ...+.-+..+|.|+-|.+ .|++.++.+.|..+-.|+-|
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCc
Confidence 99876533 344444567899999998 78999999988877777644
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.9e-18 Score=157.81 Aligned_cols=303 Identities=16% Similarity=0.211 Sum_probs=216.2
Q ss_pred cCCCCccccCC-cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc--C
Q 019258 6 VRTPPQVHRFP-QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS--H 81 (343)
Q Consensus 6 ~~~~~~~~~~~-~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~--~ 81 (343)
++....++.|+ ....|+++.=+| -=+.++.|..+++ +-++++..+. .+.++.+. ++|++++|. .
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~-----ViifNlK~dk---il~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGT-----VIIFNLKFDK---ILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred eccCcEEEEecccccceeEeccCC----cceEEEEeccCce-----EEEEEcccCc---EEEEEEccccceeEEEeccCC
Confidence 34445566664 335777777777 4578999998876 5599996533 35677786 999999999 4
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEEEEcCCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKRVYDGNG 156 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~ 156 (343)
...|++|+..|.+.+||+++.....+.+ ..|.+.|....+. ...+++++.|+.+++|-.+++. ...+...+|.
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~--nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTR--NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeee--ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 4678888888999999998655444443 3688999999887 6788899999999999665421 3445556676
Q ss_pred ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCC-------------------------eeEEeccc--------
Q 019258 157 LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGP-------------------------VLQFKGNF-------- 201 (343)
Q Consensus 157 ~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~-------------------------~~~~~~~~-------- 201 (343)
. +..|+.|.. +..+++++.|++++.+++.+....+. +..+....
T Consensus 335 ~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 335 A-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred C-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 6 899999985 77889999999999988754111111 10000000
Q ss_pred ---CCCCC-------------------------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 202 ---GSQGK-------------------------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 202 ---~~~~~-------------------------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
.+++. ....+.+++.++-|. ..+.|++.|.|-+|++..+-....+-
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----- 487 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----- 487 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc-----
Confidence 00000 004577888888775 45679999999999998764444431
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc---------------------------
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF--------------------------- 306 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~--------------------------- 306 (343)
-...|..+|.+|+.+..+. .+++|+.+|-+..|+-+....
T Consensus 488 ---~~~ah~~~V~gla~D~~n~----------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 488 ---DSPAHKGEVTGLAVDGTNR----------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ---cCccccCceeEEEecCCCc----------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 0157999999999998777 799999999999998654320
Q ss_pred ----------------cccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 307 ----------------ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 307 ----------------~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++..+...|++++++| +|++|++++-|+.|++|+-|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEecc
Confidence 1112236799999999 78999999999999999865
No 155
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-17 Score=137.90 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=186.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC--CCCCCCccCCCCCCeeEEEcc-C-CCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP--ASLTPHSQWTPPTRISSLSTS-H-QSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~--~~~~~~~~~~~~~~v~~v~~~-~-~~~l~~~s~d 91 (343)
.|.+.|++|+|+. +++.|+|++.|+. |++|++.+= ...+++..--..+..+.+.|. + ...+++....
T Consensus 84 gH~~~vt~~~FsS----dGK~lat~~~Dr~-----Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 84 GHKKEVTDVAFSS----DGKKLATISGDRS-----IRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ccCCceeeeEEcC----CCceeEEEeCCce-----EEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 3788999999999 9999999999965 779999441 112222222222456788898 3 3445555567
Q ss_pred CcEEEEEccCce----eeee-----eccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 92 GSLHVLSSAMQV----LLSV-----DENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 92 g~v~v~~~~~~~----~~~~-----~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
.++++|.+...+ .... .+....|+-++-.+-.- +.++++++.|..|.+|+++ + +....++.... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~-~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQS-SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccc-cc
Confidence 789999876221 1111 12233455566665554 7899999999999999998 4 35555554444 56
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEEccc--cCCCC---CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEE
Q 019258 161 NCVKWAS-PTEFVTGGFGYGLQWWDLRR--AGSGG---PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~d~~i~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~ 234 (343)
+..+.+| +..+++++..--|++|.+-- ++..+ .+.++++|. ..|..++|+|+... +++.+.||+++
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-------saV~~~aFsn~S~r-~vtvSkDG~wr 303 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-------SAVLAAAFSNSSTR-AVTVSKDGKWR 303 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-------hheeeeeeCCCcce-eEEEecCCcEE
Confidence 6677789 77788888899999998743 01112 233455554 88999999998765 57999999999
Q ss_pred EEEccC----CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 235 AWDLRW----QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 235 iwd~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
+||..- .+.|..+... . .+...-.+.-..+..+|.+. +++.|....|.++..... ..+.+
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g---~-~pl~aag~~p~RL~lsP~g~-----------~lA~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEG---S-APLHAAGSEPVRLELSPSGD-----------SLAVSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EeeccceEecCCCchHhhcC---C-cchhhcCCCceEEEeCCCCc-----------EEEeecCCceEEEEcccCccchhH
Confidence 999743 2222222110 0 00111222334899999876 455555566777655322 22222
Q ss_pred cc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ...|.++.+++ +|.++++-+|- .++++.
T Consensus 369 e~~h~~~Is~is~~~-~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 369 EDIHSTTISSISYSS-DGKYIATCGDR-YVRVIR 400 (420)
T ss_pred HHhhcCceeeEEecC-CCcEEeeecce-eeeeec
Confidence 22 46899999999 67888877744 555543
No 156
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=145.98 Aligned_cols=250 Identities=15% Similarity=0.053 Sum_probs=177.7
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC------ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM------QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRV 137 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~------~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v 137 (343)
...|.|.|+++.|+ ++..|++|+.|-.+++|.+.. ..++.+.. ..|...|.++.|+ ...+.+|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~--~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME--HPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc--CccccceEEEEEccCCeeEecCCCccee
Confidence 36789999999999 889999999999999999862 23333333 3477899999999 6677899999999
Q ss_pred EEEECCCCceEEEEEcC-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEE
Q 019258 138 NLVSVIGGGEFKRVYDG-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSV 214 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v 214 (343)
.+.|+++.. ..-++.. .....|+.+.-+| .+.|++.+.++.|.+||.|. ...++..+. ...+ ...+++
T Consensus 130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd--~~~~~~~~~~AN~~------~~F~t~ 200 (609)
T KOG4227|consen 130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD--RQNPISLVLPANSG------KNFYTA 200 (609)
T ss_pred Eeeecccce-eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC--CCCCCceeeecCCC------ccceee
Confidence 999999874 3333322 2122699999999 89999999999999999998 333443322 2221 568899
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.|+|..+.++++.++.|-+.+||.|.++.++...+.-.+ .+........+.|+|.+. ++++--...
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----L~~~~~~~M~~~~~~~G~----------Q~msiRR~~ 266 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----LPQENTEWMGSLWSPSGN----------QFMSIRRGK 266 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----CcccchhhhheeeCCCCC----------eehhhhccC
Confidence 999999999999999999999999987665433211100 011133457889999887 555543332
Q ss_pred eEEEEecCC-Ccccc--------cccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 295 ILAVVEQGE-EPFEL--------LAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 295 ~i~~~~~~~-~~~~~--------~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.=.+++.-. ....+ +-+.+.+.|+.+-++ ..+++|+|+-.||+|+.|
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecC
Confidence 222222211 11111 222467889998873 679999999999999976
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.1e-17 Score=151.15 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=205.9
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCC---CCccCC-CCCCeeEEEcc-CCCeEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLT---PHSQWT-PPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~---~~~~~~-~~~~v~~v~~~-~~~~l~~ 87 (343)
.+.|.+.|+++.|+| .+..|+++|+|+. +-+|.-.++. .+. .+-... ..+...+.-|+ +++.+++
T Consensus 263 l~GHeDWV~sv~W~p----~~~~LLSASaDks-----miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHP----EGLDLLSASADKS-----MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred hcCcccceEEEEEcc----chhhheecccCcc-----eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 347999999999999 6788999999964 6688764431 111 122222 23457778888 8888999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC--------------------
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-------------------- 145 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-------------------- 145 (343)
-+..|..++|...+...-.......+|.+.|.+++|. |++++++|.|-+-+++---..
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 9999999999954433334444556899999999999 999999999988777532100
Q ss_pred --------------ceEEE-------------------------------------------------------------
Q 019258 146 --------------GEFKR------------------------------------------------------------- 150 (343)
Q Consensus 146 --------------~~~~~------------------------------------------------------------- 150 (343)
.++.+
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 00000
Q ss_pred --------------------------EEcCCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEe
Q 019258 151 --------------------------VYDGNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 151 --------------------------~~~~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.+-+|.. .|++++.+| ++.+++++. ...|++|.... -.....+.
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~ 569 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---WLQVQELE 569 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCce-eEEEEEecCCCCEEeehhhhCCccceEEEEEeccc---hhhhheec
Confidence 0012222 588888888 777887765 34588999876 34445566
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
.|. --|+.++|+|+++++ ++.+.|+++.+|..........-+. ..+.|.--||+..|+|+..
T Consensus 570 ~Hs-------LTVT~l~FSpdg~~L-LsvsRDRt~sl~~~~~~~~~e~~fa-------~~k~HtRIIWdcsW~pde~--- 631 (764)
T KOG1063|consen 570 GHS-------LTVTRLAFSPDGRYL-LSVSRDRTVSLYEVQEDIKDEFRFA-------CLKAHTRIIWDCSWSPDEK--- 631 (764)
T ss_pred ccc-------eEEEEEEECCCCcEE-EEeecCceEEeeeeecccchhhhhc-------cccccceEEEEcccCcccc---
Confidence 665 559999999999765 6889999999998744222111110 1178999999999999987
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCccccc------ccccccceeeecCCC----CCeeEEccCCceEEEEeCC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEPFELL------AEPCAINSFDIDPQN----PSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~------~~~~~i~s~~~~~~~----~~~l~~~~~~~~i~~~~~~ 343 (343)
+++|||.|.++.+|...+.+.... ....+|.++++.|.. ++.|+.|.+.|.|++|+++
T Consensus 632 -------~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 632 -------YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred -------eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 799999999999998765532222 224678888876543 4478899999999999864
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=6.5e-19 Score=146.33 Aligned_cols=256 Identities=15% Similarity=0.180 Sum_probs=177.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v 94 (343)
+.+.-..++|+-.....+.++|.|++-+- |++.|+....-. .....|.+.|+.++|+ ++++++++|.|.+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~Gv-----IrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGV-----IRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeE-----EEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 66778888998864445677777776543 678888442211 2345789999999999 77899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEE-------------------
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKR------------------- 150 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~------------------- 150 (343)
++|++++...+.+.....+|.+.|.+++|+ +..|+|||.|.++++|++.... .+..
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999888888888778899999999999 8999999999999999997321 0000
Q ss_pred -----EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC------CCCCcccCeE--EEEEc
Q 019258 151 -----VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG------SQGKASGMIH--SVDIH 217 (343)
Q Consensus 151 -----~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~i~--~v~~~ 217 (343)
...-|.. .|.|+.|. ++.+++-+-++.|..|-.-+ -.+.+.+.+..+. +.......|. ..+|+
T Consensus 241 fp~fst~diHrn-yVDCvrw~-gd~ilSkscenaI~~w~pgk--l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 241 FPDFSTTDIHRN-YVDCVRWF-GDFILSKSCENAIVCWKPGK--LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccc-hHHHHHHH-hhheeecccCceEEEEecch--hhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 0011121 45555554 47789999999999998722 1222111110000 0000012233 44556
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|-+ .++|.|.+.|.|++||++..+.+.... ..+......|.+.+|+.++. .|+.+.+|++|+
T Consensus 317 ~~~-~~la~gnq~g~v~vwdL~~~ep~~~tt-------l~~s~~~~tVRQ~sfS~dgs----------~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 317 PWQ-KMLALGNQSGKVYVWDLDNNEPPKCTT-------LTHSKSGSTVRQTSFSRDGS----------ILVLVCDDGTVW 378 (385)
T ss_pred HHH-HHHhhccCCCcEEEEECCCCCCccCce-------EEeccccceeeeeeecccCc----------EEEEEeCCCcEE
Confidence 654 467899999999999999865432211 11133456799999999987 789999999999
Q ss_pred EEec
Q 019258 298 VVEQ 301 (343)
Q Consensus 298 ~~~~ 301 (343)
-|+.
T Consensus 379 rwdr 382 (385)
T KOG1034|consen 379 RWDR 382 (385)
T ss_pred EEEe
Confidence 9985
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=9.9e-19 Score=156.55 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=120.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC---CccCCCCC-CeeEEEcc-CCCeEEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP---HSQWTPPT-RISSLSTS-HQSLVAAS 88 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~---~~~~~~~~-~v~~v~~~-~~~~l~~~ 88 (343)
-.-|++.|+.+.|+| =...+|+|||.|.. ++||.++.....++ ...+.+.. .|.++.|+ ..+-|++.
T Consensus 75 l~~H~d~VtDl~Fsp---F~D~LLAT~S~D~~-----VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s 146 (1012)
T KOG1445|consen 75 LAAHGDQVTDLGFSP---FADELLATCSRDEP-----VKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS 146 (1012)
T ss_pred eecccceeeccCccc---cchhhhhcccCCCe-----eEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe
Confidence 346999999999999 45678999999976 55999974333222 22334433 58899999 44556666
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+..|+++|||+.+.+++.-. .+|...|-+.+|+ |..+++.+.|..|++||-+....+.+..+.|....=..+.|.
T Consensus 147 ~a~g~v~i~D~stqk~~~el---~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~ 223 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVEL---SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA 223 (1012)
T ss_pred ccCceEEEEEcccCceeecc---cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeec
Confidence 67889999999976655333 3699999999999 899999999999999999885566777777876444556666
Q ss_pred C-CCEEEEEeC----CCcEEEEEccc
Q 019258 167 S-PTEFVTGGF----GYGLQWWDLRR 187 (343)
Q Consensus 167 ~-~~~l~t~~~----d~~i~iwd~~~ 187 (343)
. ..+|++.+. -..|++||.|.
T Consensus 224 Gn~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 224 GNWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred cchhhhhhcccchhhheeeeeeeccc
Confidence 5 345666555 45688888876
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.1e-17 Score=129.60 Aligned_cols=278 Identities=15% Similarity=0.121 Sum_probs=186.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--------CCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--------PASLTPHSQWTPPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--------~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d 91 (343)
.|..-+|+| ..++|+.|+.+++ |.+.+++. +.+.+.+....|.++|+.++|. .++|+++ .|
T Consensus 12 tvf~qa~sp----~~~~l~agn~~G~-----iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~-gd 80 (325)
T KOG0649|consen 12 TVFAQAISP----SKQYLFAGNLFGD-----IAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSG-GD 80 (325)
T ss_pred HHHHHhhCC----cceEEEEecCCCe-----EEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeec-cC
Confidence 455668888 7889999998876 55776622 1122334456799999999998 4555555 45
Q ss_pred CcEEEEEccCcee-eeee---c-cCCccc-----cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 92 GSLHVLSSAMQVL-LSVD---E-NSGFHV-----GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 92 g~v~v~~~~~~~~-~~~~---~-~~~~h~-----~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
|.|+-|..++..+ .... + ....|. ..|+++... .+.++.++.|+.+.-||++++ ...+.+.+|.. .
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtD-Y 158 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTD-Y 158 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcc-e
Confidence 9999998873322 1000 0 111233 357887776 667777889999999999999 58888888887 8
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC---CCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
+.++.--. ...+++|+.||++|+||+++ ++.+..+....... .....+|.+++.+.+ ++ + ++....+.+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt---~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-v-CGgGp~lsl 231 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKT---QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-V-CGGGPKLSL 231 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccc---cceeEEeccccChhhcCcccCceeEEEeccCc--eE-E-ecCCCceeE
Confidence 99988744 88899999999999999999 77776655332111 112267888887653 44 3 455578999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-ccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-AEPCA 314 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~~~~~ 314 (343)
|.+|..+....+. -.+.+..+.|..+ .++++++.+.+.-|..+....-.. .++..
T Consensus 232 whLrsse~t~vfp------------ipa~v~~v~F~~d------------~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~ 287 (325)
T KOG0649|consen 232 WHLRSSESTCVFP------------IPARVHLVDFVDD------------CVLIGGEGNHVQSYTLNGVLQANIPVESTA 287 (325)
T ss_pred EeccCCCceEEEe------------cccceeEeeeecc------------eEEEeccccceeeeeeccEEEEeccCCccc
Confidence 9999855443333 3566778888743 688888888888887754332211 12222
Q ss_pred cc--eeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 315 IN--SFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 315 i~--s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.+ +...+| . +++-.++-..+++|++.+
T Consensus 288 c~s~s~~~~p-~-k~~s~ag~s~~~~i~~~~ 316 (325)
T KOG0649|consen 288 CYSASWQTSP-I-KFISIAGFSNKLHILKDF 316 (325)
T ss_pred eeeecccCCc-e-EEEEecccceeeeeeecc
Confidence 33 334445 2 555556666788888753
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.2e-17 Score=157.17 Aligned_cols=289 Identities=12% Similarity=0.075 Sum_probs=189.0
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc---CCCeEEEEcCCCcEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS---HQSLVAASTLSGSLHV 96 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v 96 (343)
...+.++| ..+.++++. |++ ++.+||..+.....-+.. ......|+++++. +..+|++++.||.|+|
T Consensus 1067 pk~~~~hp----f~p~i~~ad-~r~----~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1067 PKTLKFHP----FEPQIAAAD-DRE----RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CceeeecC----CCceeEEcC-Ccc----eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 45567777 666666652 333 578999855332211111 1234579999998 6678999999999999
Q ss_pred EEcc-Cc--eeeeeeccC--Ccc----ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 97 LSSA-MQ--VLLSVDENS--GFH----VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 97 ~~~~-~~--~~~~~~~~~--~~h----~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|+-. .. ..-.+..+. ..+ .+.=.-++|. ..+++++|+-..|++||......+..+. ....+.++++.-
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-YGSSTLVTALSA 1216 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-cCCCccceeecc
Confidence 9754 21 111111111 011 1111345666 6677777778999999999875444443 334447888876
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+. ++.+++|-.||.|++||.|...+...+...+.|.. . .+|..+.+.+.|-.-+++|+.||.|++||+|.. .
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-~----~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~ 1290 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-V----EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-S 1290 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCC-c----ccceeEEeecCCCcceeeeccCCeEEEEecccC-c
Confidence 55 68899999999999999999333334445554441 1 339999999987666789999999999999984 2
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc-------cccc
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE-------PCAI 315 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~-------~~~i 315 (343)
...+..+. .+....+.++++..|++.+ .+++|+. +.|.+|+...+ ...+..+ ..++
T Consensus 1291 ~e~~~~iv-----~~~~yGs~lTal~VH~hap----------iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1291 KETFLTIV-----AHWEYGSALTALTVHEHAP----------IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred ccccceee-----eccccCccceeeeeccCCC----------eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 22222100 0011123589999999987 5777777 99999997543 2222222 2568
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.++.+||- --.+++|+.|..|.||+-
T Consensus 1355 scL~FHP~-~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1355 SCLAFHPH-RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ceeeecch-hHhhhhccCCceEEEeec
Confidence 99999994 367888988888888863
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=142.38 Aligned_cols=240 Identities=16% Similarity=0.212 Sum_probs=176.2
Q ss_pred ccccCCcccceeeEEecCC---CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC---CeeEEEcc-CCC
Q 019258 11 QVHRFPQSKYIDAVRWLPP---LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT---RISSLSTS-HQS 83 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~---~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~---~v~~v~~~-~~~ 83 (343)
...+++.+..|..-+|-|. .+|+..++++.+.|+. |.+||..+..-.-......|.. ...+++|+ ++.
T Consensus 97 ~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P-----Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 97 LSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP-----IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred eeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc-----eeeeeccccccccchhhhhhHHhhhhheeEEecCCCC
Confidence 5678889999999999983 5578899999999977 5599995532221222334433 45689999 888
Q ss_pred eEEEEcCCCcEEEEEcc-Cceeeeee----ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 84 LVAASTLSGSLHVLSSA-MQVLLSVD----ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~-~~~~~~~~----~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
.|++| ....|++|++. .++..... +...+..+-+.+++++ .+.++.++.-.++-++.-.... +..++.+|
T Consensus 172 qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh 249 (406)
T KOG2919|consen 172 QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGH 249 (406)
T ss_pred eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeeccc
Confidence 88876 56689999995 22221111 1122335678888888 5678889988888888877763 66666677
Q ss_pred CccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 156 GLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.. .|+.++|.+ ++.|++|+. |..|..||+|. ...++..+..|.+.. ..---.+..|.++ ++++|+.||.|
T Consensus 250 ~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~--~~~pv~~L~rhv~~T----NQRI~FDld~~~~-~LasG~tdG~V 321 (406)
T KOG2919|consen 250 GG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY--SRDPVYALERHVGDT----NQRILFDLDPKGE-ILASGDTDGSV 321 (406)
T ss_pred CC-CeeeEEeccCcCeecccccCCCeEEEEeehh--ccchhhhhhhhccCc----cceEEEecCCCCc-eeeccCCCccE
Confidence 76 899999999 888998888 99999999999 667777777665211 2223345568775 67899999999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+||++....+.... ..|...++.|+++|.-+
T Consensus 322 ~vwdlk~~gn~~sv~----------~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 322 RVWDLKDLGNEVSVT----------GNYSDTVNGVSLNPIMP 353 (406)
T ss_pred EEEecCCCCCccccc----------ccccccccceecCcccc
Confidence 999999866655555 57889999999999866
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=9.3e-18 Score=142.62 Aligned_cols=207 Identities=17% Similarity=0.114 Sum_probs=159.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceee----eeeccCCccccCeEEEEec---CCEEEEEeCCCcEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLL----SVDENSGFHVGPISGVDLT---GSECVSVGEDGRVN 138 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~----~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~ 138 (343)
-+|.++|.+++|+ ++..+++||.|-+|.||++.++... .......+|...|.-+.|+ .+.|+|+|.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 4799999999999 8889999999999999999733211 1112234799999999999 78999999999999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+|++.++..+..+ . |.. .|++++|+. +.+++|++.|+.||+||.|. ++.+..-..|.+++ -..+-|-
T Consensus 158 iWnv~tgeali~l-~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~~~heG~k------~~Raifl 225 (472)
T KOG0303|consen 158 IWNVGTGEALITL-D-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEGVAHEGAK------PARAIFL 225 (472)
T ss_pred EEeccCCceeeec-C-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC---CcEeeecccccCCC------cceeEEe
Confidence 9999999655554 4 444 699999999 99999999999999999999 77777776776533 4455566
Q ss_pred CCCCeEEEEEe---cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 218 PSRKHTCLAGG---SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 218 p~~~~~~~sg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.++. ++.+|. ++.++.+||..+.+.|..+..++ ....|.==-|.|+... ..+.|-.|+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---------tSnGvl~PFyD~dt~i---------vYl~GKGD~ 286 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD---------TSNGVLLPFYDPDTSI---------VYLCGKGDS 286 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEec---------cCCceEEeeecCCCCE---------EEEEecCCc
Confidence 6665 666655 48899999999988888777443 2344555556777663 444566899
Q ss_pred eEEEEecCCCc
Q 019258 295 ILAVVEQGEEP 305 (343)
Q Consensus 295 ~i~~~~~~~~~ 305 (343)
.|+.++...+.
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 99999876544
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.3e-17 Score=134.95 Aligned_cols=242 Identities=11% Similarity=0.084 Sum_probs=171.9
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEEC
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~ 142 (343)
..+.++. ..|+.|+ .+.+|++|..||.|.|||+.+. .+.+...+|..+|++++|+ |..++++|.|..+++||+
T Consensus 19 ~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred eeccCCc-cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3445544 7899999 9999999999999999999843 3445556899999999999 999999999999999999
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
..+. +...+.... +|+...|+| .+.+++.-.+..-.+-++.. +...+......... .....+..|++.|
T Consensus 95 ~~gs-~l~rirf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-----~~h~~Lp~d~d~dl-n~sas~~~fdr~g 165 (405)
T KOG1273|consen 95 LKGS-PLKRIRFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSD-----PKHSVLPKDDDGDL-NSSASHGVFDRRG 165 (405)
T ss_pred cCCC-ceeEEEccC--ccceeeeccccCCeEEEEEecCCcEEEEecC-----CceeeccCCCcccc-ccccccccccCCC
Confidence 9986 444444443 699999999 55666655555555555532 33333322211111 1223344578877
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+ +++|...|.+.++|..+.+....+. ......|.++.++..+. .++.-+.|..|+.++
T Consensus 166 ~y-IitGtsKGkllv~~a~t~e~vas~r----------its~~~IK~I~~s~~g~----------~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 166 KY-IITGTSKGKLLVYDAETLECVASFR----------ITSVQAIKQIIVSRKGR----------FLIINTSDRVIRTYE 224 (405)
T ss_pred CE-EEEecCcceEEEEecchheeeeeee----------echheeeeEEEEeccCc----------EEEEecCCceEEEEe
Confidence 65 4689999999999998865544443 22247799999998877 688899999999988
Q ss_pred cCCCc-------cccccc------ccccceeeecCCCCCeeEEccCC-ceEEEEeC
Q 019258 301 QGEEP-------FELLAE------PCAINSFDIDPQNPSDVICSLEW-ESIAIVSR 342 (343)
Q Consensus 301 ~~~~~-------~~~~~~------~~~i~s~~~~~~~~~~l~~~~~~-~~i~~~~~ 342 (343)
..+-. .+.... ..+-+++.+++ +|.|+++|+.- .++|||.+
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEec
Confidence 64211 111111 24567788887 77888888743 58999986
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2e-17 Score=137.31 Aligned_cols=276 Identities=11% Similarity=0.167 Sum_probs=186.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC------CC-----CCCccCCCCCCeeEEEcc--------
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA------SL-----TPHSQWTPPTRISSLSTS-------- 80 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~------~~-----~~~~~~~~~~~v~~v~~~-------- 80 (343)
.....+|+| ++..|++-+.|+. |.+|+++-+. .. .+.........|...+|.
T Consensus 51 f~kgckWSP----DGSciL~~sedn~-----l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 51 FLKGCKWSP----DGSCILSLSEDNC-----LNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hhccceeCC----CCceEEeecccCe-----eeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 345678999 9999999999975 7799995321 11 111112344567777764
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcccc---CeEEEEec--CCEEEEEeCCCcEEEEECCC-Cce--EEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVG---PISGVDLT--GSECVSVGEDGRVNLVSVIG-GGE--FKRVY 152 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~---~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-~~~--~~~~~ 152 (343)
+..++++.+.+.-|++||.-+++.....+.. -|.. ...+++|+ |.+|+ ++...+|+++|+.. +.. ...+.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 4568888899999999998765533222211 2433 45788998 55554 56677899999943 321 11111
Q ss_pred cC---CCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 153 DG---NGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 153 ~~---~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.. ....-+.+++|+| ...++.+++...+-|+.-.. ..|+..+.++. +-|+-++|+++|..++.-+
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl~llggh~-------gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPLQLLGGHG-------GGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---CCceeeecccC-------CCeeeEEeccCcCeecccc
Confidence 11 1122588999999 55788899888888877655 67777777665 7799999999998876545
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccc-cEEEEEE--eecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES-EVWEVQY--DCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-.|-.|..||+|....|+-.+ ..|.+ .=..|.| .|.+. .|++++.||.|++|+.+..
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L----------~rhv~~TNQRI~FDld~~~~----------~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYAL----------ERHVGDTNQRILFDLDPKGE----------ILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred cCCCeEEEEeehhccchhhhh----------hhhccCccceEEEecCCCCc----------eeeccCCCccEEEEecCCC
Confidence 568899999999988877665 34444 3334555 45555 7999999999999998653
Q ss_pred ---cccccccccccceeeecCCCCCeeEEccCCceEE
Q 019258 305 ---PFELLAEPCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 305 ---~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+..+......+|.+.++|- --++|.+...+++
T Consensus 330 gn~~sv~~~~sd~vNgvslnP~--mpilatssGqr~f 364 (406)
T KOG2919|consen 330 GNEVSVTGNYSDTVNGVSLNPI--MPILATSSGQRIF 364 (406)
T ss_pred CCcccccccccccccceecCcc--cceeeeccCceee
Confidence 3333344678999999993 3344444444443
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=141.31 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=183.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC---CCCCC--CccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP---ASLTP--HSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~---~~~~~--~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.|...|++|.|+. ++++||+|+.|.. .++|++..- ..+++ +..-.|...|.|++|. ....+++|.
T Consensus 54 ~H~GCiNAlqFS~----N~~~L~SGGDD~~-----~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 54 EHTGCINALQFSH----NDRFLASGGDDMH-----GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhccccceeeecc----CCeEEeecCCcce-----eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 3667899999999 7999999998864 569998321 11233 3444566889999999 888999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCccceEEEEeC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKWA 166 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~ 166 (343)
.+|+|.+.|+...+.+-+.... -..+.|..++.+ .+.|++.+.++.|.+||.+....+...+ ..........+.|+
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999977777665422 245689999988 8999999999999999998753233222 22222368999999
Q ss_pred C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCC-----------------------C---------------
Q 019258 167 S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG-----------------------K--------------- 206 (343)
Q Consensus 167 ~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------------~--------------- 206 (343)
| +.++++.+..+.+-+||.|. +..++.+..+..+-+. .
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~--~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~ 281 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRM--QARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL 281 (609)
T ss_pred CCCceeEEeccccCCCCceeecc--ccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE
Confidence 9 78899999999999999987 4333322111000000 0
Q ss_pred ----------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC------------CCcccccCCcccc
Q 019258 207 ----------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG------------TGEAVTHSLSESE 264 (343)
Q Consensus 207 ----------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~------------~~~~~~~~~h~~~ 264 (343)
....+.+++|-.+ +-+++|+.+-.|++|-+-.......+.+++ .+..++..+|..-
T Consensus 282 k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 282 KSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred eccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 0011233333322 336899999999999874422222211122 1344566899999
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++|.|+|++. .|++.+-...+++|..-
T Consensus 360 ~NQVRF~~H~~----------~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 360 PNQVRFSQHNN----------LLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccceeecCCcc----------eEeccchhhheeccccc
Confidence 99999999977 78888899999999753
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=139.52 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=136.6
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENS 111 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~ 111 (343)
..+|++-..+ ++++++....... ...-.+++.++.+.|. .+..+.+++.||+|++||++...+.....+.
T Consensus 41 ~~vav~lSng-----sv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNG-----SVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCC-----eEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 3455554443 3668888542111 2223567788999998 4577999999999999999965555555543
Q ss_pred Cccc-cCeEEEEec--CCEEEEEe----CCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEE
Q 019258 112 GFHV-GPISGVDLT--GSECVSVG----EDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQ 181 (343)
Q Consensus 112 ~~h~-~~v~~~~~~--~~~~~s~s----~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~ 181 (343)
.|. .+-.+++.+ ++.+++|. .|-.|.+||++..++ +....+.|.. -|++++|+| ++.|++|+.||.|.
T Consensus 114 -~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 114 -QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred -CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEE
Confidence 344 577888887 55555553 456799999998766 4555566665 799999999 88999999999999
Q ss_pred EEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 182 WWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+||+..++...++.+...+. ..|.++.|+.++...+.+-+..++..+|++..+
T Consensus 192 lfD~~~d~EeDaL~~viN~~-------sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHG-------SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred eeecCCCcchhhHHHhhccc-------ceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99998843334444443333 669999999888555677788899999988654
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=136.39 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=140.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNG 156 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~ 156 (343)
+..++++.++|.|++||..+.+.+...+ +|...++.+.|. ...+.+|+.||+|++||++...+ .+..+..+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk---~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFK---GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheec---CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 4779999999999999998655444433 466666666665 67899999999999999987433 333333343
Q ss_pred ccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..+..+++.+- .+.+++|.. +-.|.+||.|. ..+++..+. .|. .-|+++.|||+.++++++|+.|
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~qq~l~~~~eSH~-------DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS--EQQLLRQLNESHN-------DDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEecc--ccchhhhhhhhcc-------CcceeEEecCCCCCeEEeeccc
Confidence 33677888765 555666544 78899999999 344465543 333 6799999999999999999999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
|.|.+||++....--.+... -.|...|-.+.|+...-. .++.-+.+.+..+|+...
T Consensus 188 GLvnlfD~~~d~EeDaL~~v--------iN~~sSI~~igw~~~~yk---------rI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHV--------INHGSSIHLIGWLSKKYK---------RIMCLTHMETFAIYELED 243 (376)
T ss_pred ceEEeeecCCCcchhhHHHh--------hcccceeeeeeeecCCcc---------eEEEEEccCceeEEEccC
Confidence 99999999875332222100 246678999999987754 678888999988887643
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=2.5e-17 Score=136.97 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=178.7
Q ss_pred CCCCCeeEEEcc-----CCCeEEEEcCCCcEEEEEccCceeeeeecc--CCccccCeEEEEec------CCEEEEEeCCC
Q 019258 69 TPPTRISSLSTS-----HQSLVAASTLSGSLHVLSSAMQVLLSVDEN--SGFHVGPISGVDLT------GSECVSVGEDG 135 (343)
Q Consensus 69 ~~~~~v~~v~~~-----~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~--~~~h~~~v~~~~~~------~~~~~s~s~dg 135 (343)
.|..+|.+++|. +...+++......+.+|.....-.+..... ...|...-..++|. ...++.+|.-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 566789999987 455555666666899999874333322221 11355666777776 34678889999
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.|++.|+.+++ ....+.+|+. .|..++++| ++++++++.|..||+|++++ ..++.-|-+..+|+ +.|-+
T Consensus 116 vIrVid~~~~~-~~~~~~ghG~-sINeik~~p~~~qlvls~SkD~svRlwnI~~---~~Cv~VfGG~egHr----deVLS 186 (385)
T KOG1034|consen 116 VIRVIDVVSGQ-CSKNYRGHGG-SINEIKFHPDRPQLVLSASKDHSVRLWNIQT---DVCVAVFGGVEGHR----DEVLS 186 (385)
T ss_pred EEEEEecchhh-hccceeccCc-cchhhhcCCCCCcEEEEecCCceEEEEeccC---CeEEEEeccccccc----CcEEE
Confidence 99999999884 6666667776 899999999 77999999999999999999 78888888887767 88999
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC------CCC-----------cccccCCccccEEEEEEeecCCC
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV------GTG-----------EAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~------~~~-----------~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
++|++++.. +++++.|.++++|++..++.+..+... ... +-.+-..|...|-++.|-.+
T Consensus 187 vD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd--- 262 (385)
T KOG1034|consen 187 VDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD--- 262 (385)
T ss_pred EEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh---
Confidence 999999984 689999999999999854322111100 000 00011457778888888742
Q ss_pred CcCCCCCccceEEEecCCeEEEEecCC--Cc------c----ccccc----ccc--cceeeecCCCCCeeEEccCCceEE
Q 019258 277 SNISSSRVLPAMFCSEDGILAVVEQGE--EP------F----ELLAE----PCA--INSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~------~----~~~~~----~~~--i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+++|-|-++.|..|+.++ +. . +.+.+ .+. .-.|++++ -.+.|++|...|.+|
T Consensus 263 ---------~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 263 ---------FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVY 332 (385)
T ss_pred ---------heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEE
Confidence 789999999999999842 11 1 11111 122 34455665 358999999999999
Q ss_pred EEe
Q 019258 339 IVS 341 (343)
Q Consensus 339 ~~~ 341 (343)
+|+
T Consensus 333 vwd 335 (385)
T KOG1034|consen 333 VWD 335 (385)
T ss_pred EEE
Confidence 996
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.2e-16 Score=145.79 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=176.3
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC----CCCCccCCCCCCeeEEEcc---CCCeEEEEcC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS----LTPHSQWTPPTRISSLSTS---HQSLVAASTL 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~----~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~ 90 (343)
...|.+++++| -++.++|.|.++++ +.+||+..... ..+...-.|..+++.+.|. .+.-+++++.
T Consensus 242 ~s~v~~~~f~p---~~p~ll~gG~y~Gq-----V~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCP---FDPNLLAGGCYNGQ-----VVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEecc---CCcceEEeeccCce-----EEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 35699999999 67889999999976 66999954332 2334456788899999998 3355999999
Q ss_pred CCcEEEEEccCcee---eeeeccCCcc-------ccCeEEEEec---CCEEEEEeCCCcEEEEE---CCCCc----eEEE
Q 019258 91 SGSLHVLSSAMQVL---LSVDENSGFH-------VGPISGVDLT---GSECVSVGEDGRVNLVS---VIGGG----EFKR 150 (343)
Q Consensus 91 dg~v~v~~~~~~~~---~~~~~~~~~h-------~~~v~~~~~~---~~~~~s~s~dg~v~~wd---~~~~~----~~~~ 150 (343)
||.|+.|+++.... ...... ..| ...++++.|. ...|+.|+.+|.|.--+ ..... ....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~-~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLES-KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred CCcEeeeeccccccchhhccccc-ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 99999998872211 111111 111 2367888887 77899999999987632 22221 1122
Q ss_pred EEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 151 VYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+..|.. +|+++.++| ...|++++ |-+++||.... ...|+..+..+. ..+++++|+|..+-+|+++.
T Consensus 393 ~~~~h~g-~v~~v~~nPF~~k~fls~g-DW~vriWs~~~--~~~Pl~~~~~~~-------~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 393 TFITHIG-PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV--IASPLLSLDSSP-------DYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cccccCc-ceEeeecCCCccceeeeec-cceeEeccccC--CCCcchhhhhcc-------ceeeeeEEcCcCceEEEEEc
Confidence 3334444 799999999 44555555 99999999873 267777776554 66999999999999999999
Q ss_pred cCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 229 SSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 229 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
.||.+.+||+... ..|.... ..+......+.|++.+. .|+.|.+.|.+.+++....
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~----------~~~~~~l~~~~~s~~g~----------~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQ----------KVCSPALTRVRWSPNGK----------LLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCCceehhhhhccccCCcccc----------cccccccceeecCCCCc----------EEEEecCCCcEEEEEcCch
Confidence 9999999999764 3344433 34455567777777676 6888899999999987543
No 171
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8e-16 Score=127.68 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=153.7
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEEC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~ 142 (343)
.|.+.|++++|+ ++..|++.+.|+.|++|++.+... -...+. +...+--+.+.|. ...++++-...++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 688999999999 999999999999999999974221 111110 0111233566666 556777777888999977
Q ss_pred CC---CceEEEE--Ec-----CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 143 IG---GGEFKRV--YD-----GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 143 ~~---~~~~~~~--~~-----~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
.. +...... ++ ..+...+..+-... ...+++++.|..|.+||++. +.+..+.... ..-
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG----q~L~~idtnq-------~~n 231 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG----QLLQSIDTNQ-------SSN 231 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC----ceeeeecccc-------ccc
Confidence 43 2111111 11 11111344444444 77899999999999999965 5555554332 446
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEcc---CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLR---WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
+..+.+|+|+.+ ++++---.|++|..- .+.. ... ...+..++|...|..++|+++.. .++
T Consensus 232 ~~aavSP~GRFi-a~~gFTpDVkVwE~~f~kdG~f-qev-----~rvf~LkGH~saV~~~aFsn~S~----------r~v 294 (420)
T KOG2096|consen 232 YDAAVSPDGRFI-AVSGFTPDVKVWEPIFTKDGTF-QEV-----KRVFSLKGHQSAVLAAAFSNSST----------RAV 294 (420)
T ss_pred cceeeCCCCcEE-EEecCCCCceEEEEEeccCcch-hhh-----hhhheeccchhheeeeeeCCCcc----------eeE
Confidence 677899999866 555666789999852 2111 000 11222378999999999999877 799
Q ss_pred EEecCCeEEEEecC------CCcccccc-------c-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 289 FCSEDGILAVVEQG------EEPFELLA-------E-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 289 s~s~dg~i~~~~~~------~~~~~~~~-------~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.|.||++++||.+ +.+..|.. . ..|+ .++.+| +|+.|+.+. .-.+.++.
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP-~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSP-SGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCC-CCcEEEeec-CCceEEEE
Confidence 99999999999853 22222111 1 1334 888898 445554443 33455553
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.6e-17 Score=145.77 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=172.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---C--CCCCC-CccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---P--ASLTP-HSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---~--~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
.|.+-|..+.+.| ....|++++.|+. |.+|++.. . ...++ ++...|.++|.|++.. ++..+++|
T Consensus 292 s~~d~ir~l~~~~----sep~lit~sed~~-----lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 292 SHDDCIRALAFHP----SEPVLITASEDGT-----LKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cchhhhhhhhcCC----CCCeEEEeccccc-----hhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3556677777777 6788999999976 56999922 1 12233 3335699999999999 99999999
Q ss_pred cCCCcEEEEEccCc-------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC-Ccc
Q 019258 89 TLSGSLHVLSSAMQ-------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-GLV 158 (343)
Q Consensus 89 s~dg~v~v~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-~~~ 158 (343)
+-||+|+.|++..+ ....+.....+|.+.|+.+.++ ...|++|+.||+|++|+..... + .++... ...
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC-c-cccCCccccC
Confidence 99999999977511 1122233445799999999998 7789999999999999987653 3 222211 111
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.-.++.+-. ....++...-+.--+.|... ...+..+.............+..+.++|..+ +.+++.+|+.|+++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev---~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEV---VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFF 516 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhh---hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecc
Confidence 244555543 12233333344444455444 3333322221110100114488899999875 66789999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
|.+++ .++.-. .+|...+.++++.|.++ +|++++.||++++|+...+
T Consensus 517 dn~~~-~~l~s~----------~a~~~svtslai~~ng~----------~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 517 DNKTG-KILHSM----------VAHKDSVTSLAIDPNGP----------YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccc-ccchhe----------eeccceecceeecCCCc----------eEEeecCCceeehhhccch
Confidence 99884 444433 57899999999999998 8999999999999988544
No 173
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.1e-17 Score=143.86 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=148.9
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..+.|...|..|.|+ .+++|++...+ ..|.|+++.........+ .-.+-|.++.|. ..+++.+ ....|++
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVa-Tq~~vRi 591 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVA-TQRSVRI 591 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh---hcCCceeEEEecCCCceEEEE-eccceEE
Confidence 446788899999999 99999988764 478888887432222121 245678889998 3444444 4556999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
||+.....+..+..+.. .|..++.+| +..++.++.|+.+..+|+.. ..++..++..|. ..+++|+||+
T Consensus 592 YdL~kqelvKkL~tg~k--wiS~msihp~GDnli~gs~d~k~~WfDldl--sskPyk~lr~H~-------~avr~Va~H~ 660 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSK--WISSMSIHPNGDNLILGSYDKKMCWFDLDL--SSKPYKTLRLHE-------KAVRSVAFHK 660 (733)
T ss_pred EehhHHHHHHHHhcCCe--eeeeeeecCCCCeEEEecCCCeeEEEEccc--CcchhHHhhhhh-------hhhhhhhhcc
Confidence 99987644444443333 589999999 88899999999999999987 456777777766 7799999999
Q ss_pred CCCeEEEEEecCCcEEEEE------ccCCc--eeeeeecCCCCcccccCCcccc----EEEEEEeecCCCCcCCCCCccc
Q 019258 219 SRKHTCLAGGSSGTVFAWD------LRWQQ--QSIVLSGVGTGEAVTHSLSESE----VWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd------~~~~~--~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
. ..+|++|+.||++.++- +-+.. .|+..+ .+|... |..+.|||..+ +
T Consensus 661 r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L----------~gH~~~~~~gVLd~~wHP~qp----------W 719 (733)
T KOG0650|consen 661 R-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL----------RGHEKTNDLGVLDTIWHPRQP----------W 719 (733)
T ss_pred c-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec----------cCceeecccceEeecccCCCc----------e
Confidence 6 56899999999999984 32222 244445 556544 99999999988 8
Q ss_pred eEEEecCCeEEEE
Q 019258 287 AMFCSEDGILAVV 299 (343)
Q Consensus 287 l~s~s~dg~i~~~ 299 (343)
|++++.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999997
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=5.6e-16 Score=139.88 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=197.8
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
...++++....|+.+++.| ++..|+.+..| +|-++|.++......+ -.|...|++++|+ ++.++++|
T Consensus 4 ~~~~r~~~~hci~d~afkP----DGsqL~lAAg~------rlliyD~ndG~llqtL--KgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 4 VLTWRDKAEHCINDIAFKP----DGTQLILAAGS------RLLVYDTSDGTLLQPL--KGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred hhhhhcccccchheeEECC----CCceEEEecCC------EEEEEeCCCccccccc--ccccceEEEEEEccCCceeccC
Confidence 3567778788999999999 77666666545 4779999775544333 3688999999999 99999999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
++|..|.+|.-.-.. + .+. .|...|-|+.|+ ...++||+-.- .-+|..++.. +.. ...+..+.+.+|.
T Consensus 72 ~aDK~VI~W~~klEG-~--LkY--SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K---~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEG-I--LKY--SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSK---HKSSSRIICCSWT 141 (1081)
T ss_pred CCceeEEEecccccc-e--eee--ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHh---hhhheeEEEeeec
Confidence 999999999765222 2 222 499999999999 78888887553 6688876642 221 1222258888998
Q ss_pred C-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC----eEEEEEecCCcEEEEEccCC
Q 019258 167 S-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK----HTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----~~~~sg~~dg~v~iwd~~~~ 241 (343)
. +.+++.|-.+|+|.+-+-. +++-..+....+.. .+|.+++|+|+.. .+++......++.++.+..
T Consensus 142 nDGqylalG~~nGTIsiRNk~----gEek~~I~Rpgg~N----spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG- 212 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN----GEEKVKIERPGGSN----SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG- 212 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC----CCcceEEeCCCCCC----CCceEEEecCCCCCCccceEEEEeccceeEEEEecc-
Confidence 8 8889999999999987532 34444444333222 8899999999742 3455555556666665542
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-ccccceeee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE-PCAINSFDI 320 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~-~~~i~s~~~ 320 (343)
.+.-.. ..-+-.-.++++.|.+. +++.|+.|+.+.++-...-......+ +..|.++..
T Consensus 213 ~~Igk~-----------r~L~FdP~CisYf~NGE----------y~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 213 KQIGKD-----------RALNFDPCCISYFTNGE----------YILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred eeeccc-----------ccCCCCchhheeccCCc----------EEEEccCCCceEEEeecCeEEeeccccceeEEEEEE
Confidence 111100 11223345788998877 79999999999988654433333333 678999999
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+| ++++++-|.-||+|.+||
T Consensus 272 ~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 272 KP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cc-CCceEEEEEccCeeehhh
Confidence 99 679999999999999876
No 175
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-15 Score=124.67 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=191.1
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
+.+.++. -.+.+|++ -+.+||.|..|+. +-|||+.+....+ ..-.|--+|.+++|+ ++++|+++|.|
T Consensus 19 ~tld~~~-a~~~~Fs~----~G~~lAvGc~nG~-----vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSR----WGDYLAVGCANGR-----VVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred eeccCCc-cceEEecc----CcceeeeeccCCc-----EEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCC
Confidence 3344444 78999999 8999999999964 7799995533221 123577899999999 99999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEc--CCCc--cceEEEE
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYD--GNGL--VGFNCVK 164 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~~--~~v~~~~ 164 (343)
-.|.+||+..+..+...+ -..+|...+|. .+.++.+=.+..-.+-++..++ ...+. .... ....+..
T Consensus 87 ~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ceeEEEeccCCCceeEEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccccccccccc
Confidence 999999998766554443 34689999998 4555555555556666665542 11111 1111 1123335
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|.+ ++++++|...|.+.++|..+ .+.+..++-... ..|..+.+.-.++. |+.-+.|+.|+.|+++.-..
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t---~e~vas~rits~------~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAET---LECVASFRITSV------QAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecch---heeeeeeeechh------eeeeEEEEeccCcE-EEEecCCceEEEEehhhhcc
Confidence 677 89999999999999999998 677777664431 45889999888875 56789999999999863211
Q ss_pred e---------eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CCeEEEEecCCCc-cccccc-
Q 019258 244 S---------IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DGILAVVEQGEEP-FELLAE- 311 (343)
Q Consensus 244 ~---------~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~i~~~~~~~~~-~~~~~~- 311 (343)
+ .+++. .....+..+++|+.++. +++.++. -..|++|+...+. ..+++.
T Consensus 231 ~~r~~e~e~~~K~qD---------vVNk~~Wk~ccfs~dge----------Yv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQD---------VVNKLQWKKCCFSGDGE----------YVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred cCccCCcChhHHHHH---------HHhhhhhhheeecCCcc----------EEEeccccceeEEEEecCCcceeeeecCC
Confidence 1 01110 01234557788888766 5555553 3479999987543 344443
Q ss_pred -ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 -PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 -~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
....-.++|+|- .-.+..-+.|.+|||+
T Consensus 292 kgE~l~DV~whp~--rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 292 KGEELLDVNWHPV--RPIIASIASGVVYIWA 320 (405)
T ss_pred chhheeecccccc--eeeeeeccCCceEEEE
Confidence 246788889983 4455555889999996
No 176
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=3.7e-15 Score=135.06 Aligned_cols=294 Identities=13% Similarity=0.132 Sum_probs=191.4
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeE-EEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLV-AASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~~~s~dg~ 93 (343)
-.|...|++++|.|+.. ...++++|+.|+. +.+|.+.. ++..++..+++ ..+.++++.+.... ...+.|+.
T Consensus 51 ~GH~a~VnC~~~l~~s~-~~a~~vsG~sD~~-----v~lW~l~~-~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSE-IVAEMVSGDSDGR-----VILWKLRD-EYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred cCCccceEEEEEccccc-ccceEEEccCCCc-----EEEEEEee-hheEEEEeecC-cceeEEEEEeeeeEEEeeccCce
Confidence 35888999999999643 3458999999975 56999863 34444555555 45556666532333 33368999
Q ss_pred EEEEEccCcee-----e------------------------------------------eeeccCCccccCeEEEEec--
Q 019258 94 LHVLSSAMQVL-----L------------------------------------------SVDENSGFHVGPISGVDLT-- 124 (343)
Q Consensus 94 v~v~~~~~~~~-----~------------------------------------------~~~~~~~~h~~~v~~~~~~-- 124 (343)
+.+|+.+..+. + .......+|..-|.+++|.
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 99999843220 0 0001123577788888887
Q ss_pred -C--CEEEEEeCCCcEEEEECCCCc--------------------eEE----------EEEcCCCccceEEEEeCC-CCE
Q 019258 125 -G--SECVSVGEDGRVNLVSVIGGG--------------------EFK----------RVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 125 -~--~~~~s~s~dg~v~~wd~~~~~--------------------~~~----------~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+ -+++|+|.|..|++|.+.-.. ... .++.+|+. .|+++.|+| .-.
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLD 281 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhh
Confidence 2 267899999999999873110 001 12236666 899999999 558
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce--eeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ--SIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~--~~~~~ 248 (343)
|++++.|+++.+|.... ..-+..-...-++.+...+.....-|+|++. .+++-+.-|..++|-...... +....
T Consensus 282 LLSASaDksmiiW~pd~---~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDE---NTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred heecccCcceEEEecCC---ccceEEEEEEeecccccccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeecccc
Confidence 99999999999998765 2222221111111222224478889999874 556778889999997333221 22222
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-------ccccceeeec
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE-------PCAINSFDID 321 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~-------~~~i~s~~~~ 321 (343)
.+|.+.|.+|.|+|.+. +|++.|.|.+=|++-......+ .++ .-.++++.+-
T Consensus 358 ----------SGH~~~V~dv~W~psGe----------flLsvs~DQTTRlFa~wg~q~~-wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 358 ----------SGHVDGVKDVDWDPSGE----------FLLSVSLDQTTRLFARWGRQQE-WHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred ----------ccccccceeeeecCCCC----------EEEEeccccceeeecccccccc-eeeecccccccccceeeehc
Confidence 68999999999999988 8999999999888654421111 232 2357777776
Q ss_pred CCCCCeeEEccCCceEEEEeCC
Q 019258 322 PQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+. ....++|.|--.+++|+-|
T Consensus 417 n~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 417 NE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cC-CceeeecccceeeeeecCc
Confidence 53 2566777766566676544
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-15 Score=121.10 Aligned_cols=234 Identities=18% Similarity=0.133 Sum_probs=156.2
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccC---ce----eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAM---QV----LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~---~~----~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
|.+-+++ ...+|++|+.+|.|.++.+.. .+ .-.....+.+|.++|..+.+....+++|+. |.|+-|..+..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence 4445556 678899999999999999861 10 001111225799999999999888888776 99999987431
Q ss_pred ce---EE---EEEc-----CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 146 GE---FK---RVYD-----GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 146 ~~---~~---~~~~-----~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.+ .. +... ......|.++...| .+.+++++.|+.+.-||++. ++--..+++|. +.+++
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---G~i~r~~rGHt-------DYvH~ 161 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---GRIQREYRGHT-------DYVHS 161 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---CEEEEEEcCCc-------ceeee
Confidence 11 11 1110 11112488899898 77788888999999999999 77667788887 88999
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
+.--..... +++|++||++++||+++... ...++...+..-- ..|. ..|-+++-+. . + +.|+.
T Consensus 162 vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~l-Rp~~g~wigala~~e--d----------W-lvCGg 225 (325)
T KOG0649|consen 162 VVGRNANGQ-ILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLL-RPDWGKWIGALAVNE--D----------W-LVCGG 225 (325)
T ss_pred eeecccCcc-eeecCCCccEEEEeccccce-eEEeccccChhhc-CcccCceeEEEeccC--c----------e-EEecC
Confidence 988333333 56999999999999999544 3333222111100 1222 3455665552 2 3 45666
Q ss_pred CCeEEEEecC-CCcccccccccccceeeecCCCCCeeEEccCCceE
Q 019258 293 DGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVICSLEWESI 337 (343)
Q Consensus 293 dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i 337 (343)
.-.+.+|+.. .+...+.+-+.++.-++|.. +.++.+++...+
T Consensus 226 Gp~lslwhLrsse~t~vfpipa~v~~v~F~~---d~vl~~G~g~~v 268 (325)
T KOG0649|consen 226 GPKLSLWHLRSSESTCVFPIPARVHLVDFVD---DCVLIGGEGNHV 268 (325)
T ss_pred CCceeEEeccCCCceEEEecccceeEeeeec---ceEEEeccccce
Confidence 6778888875 44556666788899999986 567777655333
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=7.8e-16 Score=135.76 Aligned_cols=261 Identities=15% Similarity=0.225 Sum_probs=172.8
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCC----CccCCCCCCeeEEEcc---CCCe
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--LTP----HSQWTPPTRISSLSTS---HQSL 84 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~----~~~~~~~~~v~~v~~~---~~~~ 84 (343)
+-.+.+++-++.|+. ..+.+ ..+.|.. .+.-|++..+.. .+. +....|.+ ...-. ..+.
T Consensus 10 k~r~~e~vc~v~w~~----~eei~-~~~dDh~----~~~~~~~~~~s~~~~~~p~df~pt~~h~~---~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSS----NEEIY-FVSDDHQ----IFKWSDVSRDSVEVAKLPDDFVPTDMHLG---GRSSGGGKGSDT 77 (737)
T ss_pred ccccceeEEeecccc----cceEE-EeccCce----EEEeecccchhhhhhhCCcccCCcccccc---ccccCCCCCcce
Confidence 346778889999999 33333 3333432 244555533211 111 11111211 11111 4567
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 162 (343)
|+.+++||.+.+.+-... +.+...+|.+.+.+-.|+ |.-++++|+||.|++|.- ++ ..+........ +|+|
T Consensus 78 ~~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG-MLRStl~Q~~~-~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG-MLRSTVVQNEE-SIRC 150 (737)
T ss_pred EEEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc-hHHHHHhhcCc-eeEE
Confidence 999999999998865421 122233699999999999 889999999999999984 44 23433332333 7999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|.| ++.++.+ ..+.+.|=-+.. ...+.+.+.|+ +-|-+++|+|.. +++++|++|-+.++||...
T Consensus 151 ~~W~p~S~~vl~c-~g~h~~IKpL~~---n~k~i~WkAHD-------GiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G- 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFC-QGGHISIKPLAA---NSKIIRWRAHD-------GLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG- 217 (737)
T ss_pred EEECCCCCceEEe-cCCeEEEeeccc---ccceeEEeccC-------cEEEEeecCccc-cceeecCCceeEEeecccC-
Confidence 99999 5545444 356677766766 56677788877 889999999975 6889999999999999753
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDID 321 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~ 321 (343)
.++... ..|+-+|++++|+|+.. ++.+| -+++++ + ......|-.+.|+
T Consensus 218 -~~Lf~S----------~~~ey~ITSva~npd~~-----------~~v~S-~nt~R~-~--------~p~~GSifnlsWS 265 (737)
T KOG1524|consen 218 -ANLFTS----------AAEEYAITSVAFNPEKD-----------YLLWS-YNTARF-S--------SPRVGSIFNLSWS 265 (737)
T ss_pred -cccccC----------Chhccceeeeeeccccc-----------eeeee-eeeeee-c--------CCCccceEEEEEc
Confidence 222222 67999999999999832 33333 334441 1 1223679999999
Q ss_pred CCCCCeeEEccCCceEEE
Q 019258 322 PQNPSDVICSLEWESIAI 339 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~ 339 (343)
+ +|..++||...|-+.+
T Consensus 266 ~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 266 A-DGTQATCGTSTGQLIV 282 (737)
T ss_pred C-CCceeeccccCceEEE
Confidence 9 7899999998886543
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=3.1e-15 Score=127.41 Aligned_cols=205 Identities=11% Similarity=0.114 Sum_probs=151.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC----CC-CccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL----TP-HSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~----~~-~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
.|...|-.++|.| -+...+|+||.|.+ +.+|.++++... ++ .....|...|.-+.|+ ..+.|+++
T Consensus 79 GHt~~vLDi~w~P---fnD~vIASgSeD~~-----v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 79 GHTAPVLDIDWCP---FNDCVIASGSEDTK-----VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CccccccccccCc---cCCceeecCCCCce-----EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 4777899999999 66788999999964 679999775322 12 2234678889999999 77899999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.|.+|.+|++.+++.+... .|...|.+++|+ |.++++.+.|..|++||.++++.+..- ..|....-..+-|.
T Consensus 151 g~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl 225 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFL 225 (472)
T ss_pred cCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEe
Confidence 99999999999977655443 299999999999 999999999999999999998643333 45554344445555
Q ss_pred CCCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 167 SPTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
....++|.+. +.++.+||... ..+|+.... ... . ..|.---++|+..-+.++|=.|+.|+.|.+...
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~n--l~eP~~~~e-lDt----S-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNN--LEEPIALQE-LDT----S-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCceeeeccccccccceeccCccc--ccCcceeEE-ecc----C-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 5333666654 88999999877 445533222 111 1 224444567777777788889999999999763
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.9e-16 Score=138.34 Aligned_cols=250 Identities=16% Similarity=0.158 Sum_probs=170.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-----ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-----QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..|...|..+.|. -...|++++.||.+.+|+++. ...+...-..++|.++|.|+.+. ++++++|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 3456678888888 778899999999999999941 11122222335899999999998 999999999999999
Q ss_pred EECCC---------CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 140 VSVIG---------GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 140 wd~~~---------~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
|++.. .......+.+|.. .++.+++++ ...|++++.||++++|+... ..+ ..|..... . +
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~---~~~-~~f~~~~e-~----g 440 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTE---ESP-CTFGEPKE-H----G 440 (577)
T ss_pred eccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCC---cCc-cccCCccc-c----C
Confidence 96532 1123455667776 799999999 88899999999999999876 333 33332210 1 4
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
.-.++++-.....+.++...-|.--++|+........+. .. +.....-...+..+.++|..+ ..++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~-s~---~~~~~~~~~~in~vVs~~~~~----------~~~~ 506 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE-SS---ASPGPRRYPQINKVVSHPTAD----------ITFT 506 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeecc-cc---CCCcccccCccceEEecCCCC----------eeEe
Confidence 455666655443333333333333344444322222211 00 000111235678899999887 7999
Q ss_pred EecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 290 CSEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 290 ~s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+-+|+.|++++... ...+...+...+.++++.| +|.+|++|+.|+.+.+|+.
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 99999999988643 2345455567899999999 7899999999999998863
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=2.8e-14 Score=136.88 Aligned_cols=261 Identities=16% Similarity=0.105 Sum_probs=169.9
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC----CCCCCCccCC-CCCCeeEEEcc-CCCeEE
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP----ASLTPHSQWT-PPTRISSLSTS-HQSLVA 86 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~----~~~~~~~~~~-~~~~v~~v~~~-~~~~l~ 86 (343)
|-..|...|.+++-++ +++.+|+|||.|++ +++|++.+- ....+...+. ..+.+.++.++ .++.+|
T Consensus 1043 hL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGt-----VKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSS---EHTSLFVSGSDDGT-----VKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred hhhhccccccceeecC---CCCceEEEecCCce-----EEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 3345777888888888 67799999999986 669998431 2222333333 56789999888 889999
Q ss_pred EEcCCCcEEEEEccCc--eee--eeeccCCcc-ccCeEEEEec----CC-EEEEEeCCCcEEEEECCCCceEEEEE--cC
Q 019258 87 ASTLSGSLHVLSSAMQ--VLL--SVDENSGFH-VGPISGVDLT----GS-ECVSVGEDGRVNLVSVIGGGEFKRVY--DG 154 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~--~~~--~~~~~~~~h-~~~v~~~~~~----~~-~~~s~s~dg~v~~wd~~~~~~~~~~~--~~ 154 (343)
.++.||.|++.+++.. ... ...+....+ .+.+.++.-. .. .++.+..-+.+..||++......+.. ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999999741 111 111111222 2445554332 44 67788888999999998743222221 22
Q ss_pred CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC---eEEEEEe-c
Q 019258 155 NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK---HTCLAGG-S 229 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~~~sg~-~ 229 (343)
|+ .|++++.+| ++.++.|+..|.+.+||+|- +.++....... + .+++.+..+|..+ ..+.+|+ .
T Consensus 1195 hG--~vTSi~idp~~~WlviGts~G~l~lWDLRF---~~~i~sw~~P~--~----~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1195 HG--LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF---RVPILSWEHPA--R----APIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred cc--ceeEEEecCCceEEEEecCCceEEEEEeec---CceeecccCcc--c----CCcceEEeeccCCCCceEEEecccC
Confidence 33 599999999 88999999999999999998 77777655333 2 6788888887654 4444455 5
Q ss_pred CCcEEEEEccCCceeeeeecC-CC---Cccccc----CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 230 SGTVFAWDLRWQQQSIVLSGV-GT---GEAVTH----SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~-~~---~~~~~~----~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.|.+|++.++.....+... +. ....+. +.+.-+.....+.--++ .+++++.|+.|+.||.
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~----------~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG----------FLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc----------eeeecCCccceeeccC
Confidence 778999999887555555432 00 000000 01111111122222222 7899999999999995
Q ss_pred C
Q 019258 302 G 302 (343)
Q Consensus 302 ~ 302 (343)
.
T Consensus 1334 ~ 1334 (1431)
T KOG1240|consen 1334 T 1334 (1431)
T ss_pred C
Confidence 3
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.1e-14 Score=137.56 Aligned_cols=239 Identities=15% Similarity=0.190 Sum_probs=167.8
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCC-
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGG- 145 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~- 145 (343)
++-..+.|+ -.+.++++...-.|++||.+.++.+.-......-...|+.+.+- ...+++|+.||.|++|+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345667777 66778888878899999998766554333222334578888875 567899999999999975321
Q ss_pred -c--eEEEEEc-------CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 146 -G--EFKRVYD-------GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 146 -~--~~~~~~~-------~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+ ++..-+. .....+ .-++|.. .+.|+++|.-..|+|||... ...+..+..... ..++++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~------t~vTaL 1214 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSS------TLVTAL 1214 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCC------ccceee
Confidence 1 1222111 111112 3457777 77888888899999999987 455555443321 457777
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCce--eeeeecCCCCcccccCCcccc--EEEEEEeecCCCCcCCCCCccceEEE
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSESE--VWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
.-+-...+++++|..||.|++||.|.... ++... ..|... |..+.+.+.+-. .|+++
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~----------R~h~~~~~Iv~~slq~~G~~---------elvSg 1275 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY----------REHNDVEPIVHLSLQRQGLG---------ELVSG 1275 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceee----------cccCCcccceeEEeecCCCc---------ceeee
Confidence 66554557899999999999999987543 34444 567777 999999987765 79999
Q ss_pred ecCCeEEEEecCCCccccccc-------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SEDGILAVVEQGEEPFELLAE-------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~~~~~~~~~~-------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.||.|++||......+.... ...+.++.+|+. -..++||+. +.|.||+
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-CCeeeecCc-ceEEEEe
Confidence 999999999986533222211 235999999984 488889886 8899886
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=4.4e-16 Score=139.79 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=159.7
Q ss_pred eeeeeCCCCCCC--CCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEE
Q 019258 51 LETHSISLPASL--TPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVD 122 (343)
Q Consensus 51 l~~w~~~~~~~~--~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~ 122 (343)
|.|+++.+.... ..+..+.....|+++.|. +...|++++.||.|++|++..+ .+.........|..+|+++.
T Consensus 605 iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slR 684 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLR 684 (1012)
T ss_pred EEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEE
Confidence 568888554221 223445556789999999 8899999999999999999722 11222223456999999999
Q ss_pred ec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 123 LT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 123 ~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
|+ .+.+++++.|.+|++||+.+.+ ....+.+|.. .|..++|+| +.++++.+.||+|++|..|. ..+++..-+
T Consensus 685 fHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs--~e~pv~Eg~ 760 (1012)
T KOG1445|consen 685 FHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS--REQPVYEGK 760 (1012)
T ss_pred ecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC--CCCccccCC
Confidence 99 8899999999999999999985 4444566766 799999999 89999999999999999998 455655544
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEec---CCcEEEEEccCCc-eeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGS---SGTVFAWDLRWQQ-QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~---dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.-+ ..--.|.|.-+|+.++++|.+ ++.|.+||..+.. .|+..+.++ -...+.--.+.++.
T Consensus 761 gpvg------tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 761 GPVG------TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDS 825 (1012)
T ss_pred CCcc------CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCC
Confidence 3332 334567777788877777653 5678899876644 333333211 11122223355665
Q ss_pred CCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.. .+++|-.|.+|++++.-
T Consensus 826 ~~---------lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 826 NV---------LFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ce---------EEEecCCCceEEEEEec
Confidence 55 78899999999998753
No 184
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.6e-15 Score=129.01 Aligned_cols=304 Identities=12% Similarity=0.064 Sum_probs=203.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
+|.-.|+.|.|.. .+..+++||.|.. +-+|+..... .++-..-.|...|..-+|. +..-+++.+.||
T Consensus 140 ~H~GcVntV~FN~----~Gd~l~SgSDD~~-----vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQ----RGDVLASGSDDLQ-----VVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred CCCCccceeeecc----cCceeeccCccce-----EEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccC
Confidence 5778899999999 8999999999854 4466663321 2222334566667777776 667799999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCc---cceEEEEe
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGL---VGFNCVKW 165 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~---~~v~~~~~ 165 (343)
.|++=.+.......-......|.++|+-++.. ...|.+++.|+.++-.|+++......+. ..++. .....++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99988776333333223334699999999887 7789999999999999998753211111 11221 35788888
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCC---CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGS---GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+| .+.+++++.|-.+++||.|.-.. ..++.++..+.... .....|++++++.++..++ +...|-.|+++.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSM 367 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCcccee-eeecccceEEecccc
Confidence 88 66899999999999999986111 11233333222111 1225699999998877765 457788899994322
Q ss_pred Cce--eeeeecCCCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccccc-ccc
Q 019258 241 QQQ--SIVLSGVGTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAE-PCA 314 (343)
Q Consensus 241 ~~~--~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~-~~~ 314 (343)
+.. |....-.-.-...++++|.. .|..+-|-.-... ++++||+-|.|.+|+... +...++.. ..-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---------yVvSGSDCGhIFiW~K~t~eii~~MegDr~V 438 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---------YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV 438 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccc---------eEEecCccceEEEEecchhHHHHHhhcccce
Confidence 211 11111000111122356654 4888888643334 899999999999999863 34444443 348
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||++.-||.. ..|++.+=+.-|.||+
T Consensus 439 VNCLEpHP~~-PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 439 VNCLEPHPHL-PVLASSGIDHDVKIWT 464 (559)
T ss_pred EeccCCCCCC-chhhccCCccceeeec
Confidence 9999999965 8888888888999996
No 185
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=124.36 Aligned_cols=226 Identities=14% Similarity=0.172 Sum_probs=161.5
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~ 145 (343)
..+.|++|.|+ ...+|++++.||.++||.+.......+.. ...-.-||.+..|. |. .+++++.-..+..||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-eeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 45789999999 77899999999999999998332221111 11234578887777 66 7889999999999999886
Q ss_pred ceEEEEE--cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 146 GEFKRVY--DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 146 ~~~~~~~--~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+ ...+- .++....+.....++ ++.++..|..|.|.+....+ ++.+..++.. +.|..++|+.++..
T Consensus 291 k-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT---~eli~s~Kie--------G~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 291 K-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT---KELITSFKIE--------GVVSDFTFSSDSKE 358 (514)
T ss_pred c-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh---hhhhheeeec--------cEEeeEEEecCCcE
Confidence 4 33221 122222466667777 88999999999999999888 6777777643 67999999988876
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccE--EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV--WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
++ +.+.+|.|.+||+++......+. -++.| ..++.++++. +|++||..|.|-+|+
T Consensus 359 l~-~~~~~GeV~v~nl~~~~~~~rf~------------D~G~v~gts~~~S~ng~----------ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 359 LL-ASGGTGEVYVWNLRQNSCLHRFV------------DDGSVHGTSLCISLNGS----------YLATGSDSGIVNIYD 415 (514)
T ss_pred EE-EEcCCceEEEEecCCcceEEEEe------------ecCccceeeeeecCCCc----------eEEeccCcceEEEec
Confidence 65 55678999999999875544444 23444 3455556665 899999999999999
Q ss_pred cCCCccccccc--------ccccceeeecCCCCCeeEEcc
Q 019258 301 QGEEPFELLAE--------PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 301 ~~~~~~~~~~~--------~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+.......+. -..|+++.|++ +.+.|+-++
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS 454 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIAS 454 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhh
Confidence 65433322222 36799999998 445554333
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.8e-13 Score=115.97 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=158.8
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCC--cEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDG--RVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg--~v~~wd~~~~~~~~ 149 (343)
.++.+.|. +...|..|+.|| .++|+...... ..........|.-+-|+...++..+.+. .+++.+++... ..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~-~I 81 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT-TI 81 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH---hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc-eE
Confidence 45566677 667788888888 47787763322 1111011224555566666666666544 48899988764 44
Q ss_pred EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-
Q 019258 150 RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG- 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~- 228 (343)
.-+.... .|.++.++....++ +=. ..|.|||++. -+.+.++..... +...+.++.+++.+.++..-++
T Consensus 82 Ce~~fpt--~IL~VrmNr~RLvV-~Le-e~IyIydI~~---MklLhTI~t~~~----n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 82 CEIFFPT--SILAVRMNRKRLVV-CLE-ESIYIYDIKD---MKLLHTIETTPP----NPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred EEEecCC--ceEEEEEccceEEE-EEc-ccEEEEeccc---ceeehhhhccCC----CccceEeeccCCCCceEEecCCC
Confidence 3333444 49999998765444 433 3499999998 777777654321 1133666666665545433333
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEecC--CCc
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVEQG--EEP 305 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~~~--~~~ 305 (343)
..|.|.+||+-+ -.+.... .+|++.+-+|+|++++. .|+++|+.|+ ||++.-. ...
T Consensus 151 t~GdV~l~d~~n-l~~v~~I----------~aH~~~lAalafs~~G~----------llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 151 TSGDVVLFDTIN-LQPVNTI----------NAHKGPLAALAFSPDGT----------LLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred CCceEEEEEccc-ceeeeEE----------EecCCceeEEEECCCCC----------EEEEeccCceEEEEEEcCCccEe
Confidence 478999999987 5666666 68999999999999988 8999999998 4777653 444
Q ss_pred cccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 306 FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 306 ~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++... +..|+|+.|++ ++++|.|.++.++|++|+
T Consensus 210 ~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFK 246 (391)
T ss_pred eeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEE
Confidence 555544 57899999999 679999999999999997
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=1.7e-12 Score=118.29 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-C-CCeeEEEc-c-CCC-eEEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-P-TRISSLST-S-HQS-LVAAS 88 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~-~~v~~v~~-~-~~~-~l~~~ 88 (343)
...+...|..+.+.+ .+..++.++.|+. +.+|+...... ....+.. . ..+..+.+ . +.. .++..
T Consensus 61 ~~~~~~~i~~~~~~~----~~~~~~~~~~d~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 61 LRGHEDSITSIAFSP----DGELLLSGSSDGT-----IKLWDLDNGEK--LIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred eeeccceEEEEEECC----CCcEEEEecCCCc-----EEEEEcCCCce--eEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 456778899999999 7888888887754 66999855430 1111111 2 35666666 5 444 44544
Q ss_pred cC-CCcEEEEEccC-ceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 89 TL-SGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 89 s~-dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
+. |+.+.+|+... ....... ..|...|..+.+. +..+++++. |+.+++|+..... ....+..|.. .+.++
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~ 204 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTL---EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTD-PVSSL 204 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEE---ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCC-ceEEE
Confidence 44 99999999985 2322222 2588899999998 667888875 9999999999863 5555555555 79999
Q ss_pred EeCC-CC-EEEEEeCCCcEEEEEccccCCCCCee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 164 KWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 164 ~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+|.| .. .+++++.|+.|++||.+. +..+. .+..+. ... -..|+|++ ..+++++.|+.+++||++.
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~~~-------~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHS-------DSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCC---CcEEeeecCCCC-------cce-eEeECCCC-CEEEEecCCCcEEEeeecC
Confidence 9998 44 455558899999998876 55555 354443 222 22789987 4667899999999999987
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccc--ccccccc
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELL--AEPCAIN 316 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~--~~~~~i~ 316 (343)
........ ..|...+.++.|+|+.. .+++++.|+.+.+|+..... .... .+...+.
T Consensus 273 ~~~~~~~~----------~~~~~~v~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
T COG2319 273 SSSLLRTL----------SGHSSSVLSVAFSPDGK----------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332 (466)
T ss_pred CCcEEEEE----------ecCCccEEEEEECCCCC----------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceE
Confidence 55422222 34788999999999665 56778888889999764332 1211 2223578
Q ss_pred eeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 317 SFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 317 s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
.+.+ ..++..++.+ ..++.+.+|..
T Consensus 333 ~~~~-~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 333 SLSF-SPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEEE-CCCCCEEEEeecCCCcEEeeec
Confidence 8887 4222444444 56677777653
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=6.1e-15 Score=119.53 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=170.8
Q ss_pred CCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCce
Q 019258 69 TPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 69 ~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
+|.+.|+++.|...++|++|..-|.|++|.+...+.....+. .|...|+.++.. ++.+.+-+.|+++.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhh--hccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 677899999999667799999999999999986655544432 477789999887 88999999999999999744110
Q ss_pred -----------------------EE-EE--E-----------cCC--------------CccceEEEEeCC---CC-EEE
Q 019258 148 -----------------------FK-RV--Y-----------DGN--------------GLVGFNCVKWAS---PT-EFV 172 (343)
Q Consensus 148 -----------------------~~-~~--~-----------~~~--------------~~~~v~~~~~~~---~~-~l~ 172 (343)
.. .. + +.. ....+.|.++.- .. .++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 00 00 0 000 001355555322 22 355
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccC---CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFG---SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|-.+|.+.+||+.. +..+.+++..+. ....+..++.++++.+.-.. =++|+-+..+..|.+........+..
T Consensus 170 aGyEsghvv~wd~S~---~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 170 AGYESGHVVIWDLST---GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EeccCCeEEEEEccC---CceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeeccccCcccccc
Confidence 566699999999988 544444432221 00112378999999875332 24788888899998865422221110
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec--CCCcccccccccccceeeecCCCCCe
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ--GEEPFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~--~~~~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
. ...-+..|..+..-||+. .+++++.||+|+++.. ......+..+...||+++++|+ -..
T Consensus 246 e-------~~lknpGv~gvrIRpD~K----------IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd-~~l 307 (323)
T KOG0322|consen 246 E-------ITLKNPGVSGVRIRPDGK----------ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD-CEL 307 (323)
T ss_pred e-------EEecCCCccceEEccCCc----------EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC-Cch
Confidence 0 022345688999999988 7999999999998654 3444555566788999999995 489
Q ss_pred eEEccCCceEEEEe
Q 019258 328 VICSLEWESIAIVS 341 (343)
Q Consensus 328 l~~~~~~~~i~~~~ 341 (343)
+++++.|.+|.+|+
T Consensus 308 mAaaskD~rISLWk 321 (323)
T KOG0322|consen 308 MAAASKDARISLWK 321 (323)
T ss_pred hhhccCCceEEeee
Confidence 99999999999997
No 189
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.9e-14 Score=120.11 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=181.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC----ccCCCCCCeeEEEccCCCeEEEEc
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH----SQWTPPTRISSLSTSHQSLVAAST 89 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~----~~~~~~~~v~~v~~~~~~~l~~~s 89 (343)
.++...+|+++.|--. +..+.|+-.+.|.. +....+.+.+....+ ...-..+.|-.++.. +..|+++-
T Consensus 51 ~~~~~~ris~l~~~~d--~~tevl~~r~~~~~-----~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~ 122 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVD--GETEVLNARSADDD-----LPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCV 122 (412)
T ss_pred ccchhhhhhhheeecC--CceeEeeccccCcc-----cccccccCCccccccccccccccccccccchhhc-CCEEEEEe
Confidence 3455567888888862 24466666655543 334555443221111 222334667777776 56788889
Q ss_pred CCCcEEEEEccCce--eeeeeccCCccccCeEEEEec---CCEEEEEeCC--CcEEEEECCCCceEEEEEcCCC------
Q 019258 90 LSGSLHVLSSAMQV--LLSVDENSGFHVGPISGVDLT---GSECVSVGED--GRVNLVSVIGGGEFKRVYDGNG------ 156 (343)
Q Consensus 90 ~dg~v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~d--g~v~~wd~~~~~~~~~~~~~~~------ 156 (343)
.+|.+.+|....+. .-...... .+ .++..+.-. ...+++||.. ..+++||+.+.+++..--.-..
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la-~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLA-TG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred cCCcEEEEeccCCccccccceeee-cC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 99999999887221 11111111 11 344444444 4556678988 8899999988643332211111
Q ss_pred -ccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 157 -LVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 157 -~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
...++++.|.+ +..|++++.-+++++||.+. ..+|+.+|...+ .+++++...|++.. +.+|..-|.
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--qRRPV~~fd~~E-------~~is~~~l~p~gn~-Iy~gn~~g~ 270 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--QRRPVAQFDFLE-------NPISSTGLTPSGNF-IYTGNTKGQ 270 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcc--cCcceeEecccc-------CcceeeeecCCCcE-EEEecccch
Confidence 12466777766 67899999999999999998 678888887665 78999999999865 578999999
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE- 311 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~- 311 (343)
+..||+|....+...+ .+..+.|.+|..||..+ ++++|+-|..+++.|... ..+++.
T Consensus 271 l~~FD~r~~kl~g~~~----------kg~tGsirsih~hp~~~----------~las~GLDRyvRIhD~kt--rkll~kv 328 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGL----------KGITGSIRSIHCHPTHP----------VLASCGLDRYVRIHDIKT--RKLLHKV 328 (412)
T ss_pred hheecccCceeecccc----------CCccCCcceEEEcCCCc----------eEEeeccceeEEEeeccc--chhhhhh
Confidence 9999999976666655 67789999999999988 899999999999998765 222332
Q ss_pred --ccccceeeecC
Q 019258 312 --PCAINSFDIDP 322 (343)
Q Consensus 312 --~~~i~s~~~~~ 322 (343)
...++.+-+.+
T Consensus 329 YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 329 YVKSRLTFILLRD 341 (412)
T ss_pred hhhccccEEEecC
Confidence 34456665544
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=140.89 Aligned_cols=270 Identities=11% Similarity=0.064 Sum_probs=191.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|-..|.|+.+-. .+++++|||.|.- +++|+..+ ..|+.+ -+|.+.|+.++.+ +.-++++++.|..
T Consensus 188 gH~naVyca~fDr----tg~~Iitgsdd~l-----vKiwS~et---~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDR----TGRYIITGSDDRL-----VKIWSMET---ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred hhhhheeeeeecc----ccceEeecCccce-----eeeeeccc---hhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 3556799999988 8999999998864 46999744 334444 4689999999999 7778899999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE----EcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV----YDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~----~~~~~~~~v~~~~~~~-~ 168 (343)
|++|.+..+.++.+.. +|++.|++++|+... +.+.||++++||.+-. ++.. .......-+..+.|.. .
T Consensus 256 IrvWrl~~~~pvsvLr---ghtgavtaiafsP~~--sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLR---GHTGAVTAIAFSPRA--SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEEecCCCchHHHHh---ccccceeeeccCccc--cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccccc
Confidence 9999999877776654 799999999998322 8899999999998721 1111 1111111355555555 6
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
..++|++.|+.-..|...+ .. ... ..+.-+....+-..+.+++-.+..+++|++..+... ..+
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~---l~-~~~------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~l 391 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQ---LA-WRS------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HNL 391 (1113)
T ss_pred cccccccCCcccccchhhH---hh-hhc------------cceEEEeccccccccceeeeeeeEeeeeecccchhh-hhh
Confidence 7899999999999998765 11 000 001111111122245567777889999999875433 323
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~i~s~~~~~~~~~ 326 (343)
.+|...++.|.+||-++. ..++++.||...+|+..+.. ...+.. +..+..-.|++ +|.
T Consensus 392 ----------~ghsd~~yvLd~Hpfn~r---------i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq-dgt 451 (1113)
T KOG0644|consen 392 ----------MGHSDEVYVLDVHPFNPR---------IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ-DGT 451 (1113)
T ss_pred ----------cccccceeeeeecCCCcH---------hhhhccCCCceEeeecccCCcceeeecccceeeccccCC-CCc
Confidence 578999999999999987 78899999999999986553 222222 34555556776 578
Q ss_pred eeEEccCCceEEEEe
Q 019258 327 DVICSLEWESIAIVS 341 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~ 341 (343)
.+++..+-+.+||+.
T Consensus 452 s~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILG 466 (1113)
T ss_pred eEecCCCCCceEEec
Confidence 888888888888875
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1e-14 Score=118.24 Aligned_cols=246 Identities=13% Similarity=0.108 Sum_probs=166.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
||...|+++.|.. +++|.+|..-+ .+.+|.+..+.. .+.-..-+...|+.+.-..++.|.+-+.|+.+.
T Consensus 12 p~~~~v~s~~fqa-----~~rL~sg~~~G-----~V~~w~lqt~r~-~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 12 PHSSSVTSVLFQA-----NERLMSGLSVG-----IVKMWVLQTERD-LPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLI 80 (323)
T ss_pred cccchheehhhcc-----chhhhcccccc-----eEEEEEeecCcc-chhhhhhccceeeceeecCCcchhhcCCCceEE
Confidence 7888888888877 44466775543 366999965322 122222344567777766668888888999999
Q ss_pred EEEccCceee---------------------------eeec-----------------------cCCccccCeEEEEec-
Q 019258 96 VLSSAMQVLL---------------------------SVDE-----------------------NSGFHVGPISGVDLT- 124 (343)
Q Consensus 96 v~~~~~~~~~---------------------------~~~~-----------------------~~~~h~~~v~~~~~~- 124 (343)
+|++....-+ .... ......+.+.+..+.
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 9987421100 0000 000112356666655
Q ss_pred --CC--EEEEEeCCCcEEEEECCCCceEEEE---------EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCC
Q 019258 125 --GS--ECVSVGEDGRVNLVSVIGGGEFKRV---------YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGS 190 (343)
Q Consensus 125 --~~--~~~s~s~dg~v~~wd~~~~~~~~~~---------~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~ 190 (343)
+. .++.|-++|.|.+||+.++.....+ +..|.. ++.++.|.+ .+.=++++.+..+..|.+.-...
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ-PVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC-cceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 33 3456779999999999886322221 123343 799999988 66778889999999998865111
Q ss_pred CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
.-++....... + -.+..+..-|++ .++|+++.||+|++|..|+ ..|+.++ +.|.+.|++++|
T Consensus 240 slq~~~e~~lk-----n-pGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-l~pLAVL----------kyHsagvn~vAf 301 (323)
T KOG0322|consen 240 SLQIRKEITLK-----N-PGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-LNPLAVL----------KYHSAGVNAVAF 301 (323)
T ss_pred cccccceEEec-----C-CCccceEEccCC-cEEeecccCCcEEEEEecc-CCchhhh----------hhhhcceeEEEe
Confidence 11221111111 0 337788888986 5899999999999999998 5677766 789999999999
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+|+.+ .++++|.|++|-+|+.
T Consensus 302 spd~~----------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCE----------LMAAASKDARISLWKL 322 (323)
T ss_pred CCCCc----------hhhhccCCceEEeeec
Confidence 99976 7999999999999984
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=5.5e-12 Score=114.85 Aligned_cols=279 Identities=19% Similarity=0.262 Sum_probs=190.2
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCC-eEEEEcCC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQS-LVAASTLS 91 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~-~l~~~s~d 91 (343)
..|...|..+.|+| ++..+++++. |+. +++|++...... .....|...|.+++|+ ++. .+++++.|
T Consensus 152 ~~~~~~v~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 152 EGHSESVTSLAFSP----DGKLLASGSSLDGT-----IKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ecCcccEEEEEECC----CCCEEEecCCCCCc-----eEEEEcCCCceE--EeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 35778899999999 6667777764 543 779999652111 1122378899999999 555 44444899
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
+.|++|+......+.. ....|...+ -..|. +..+++++.|+.+++|++............|.. .+.++.|.| .
T Consensus 221 ~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 296 (466)
T COG2319 221 GTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDG 296 (466)
T ss_pred CcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCC
Confidence 9999998774333331 122465553 22555 668889999999999999875432333334433 799999999 7
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEe--cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFK--GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..+++++.|+.+++||.+. ........ .+. ..+..+.+.+.+..+...+..|+.+.+|++.... ...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 365 (466)
T COG2319 297 KLLASGSSDGTVRLWDLET---GKLLSSLTLKGHE-------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK 365 (466)
T ss_pred CEEEEeeCCCcEEEEEcCC---CceEEEeeecccC-------CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE
Confidence 7888888899999998877 44333333 332 4588898832224455444688999999998765 222
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE-EecCCeEEEEecCCCcccc-cccc-cccceeeecCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF-CSEDGILAVVEQGEEPFEL-LAEP-CAINSFDIDPQ 323 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s-~s~dg~i~~~~~~~~~~~~-~~~~-~~i~s~~~~~~ 323 (343)
.. .....+..+.+.+ . . .++. +..++.+.+|+........ .... ..+....+.+
T Consensus 366 ~~-----------~~~~~~~~~~~~~-~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 422 (466)
T COG2319 366 TL-----------EGHSNVLSVSFSP-D-G---------RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP- 422 (466)
T ss_pred Ee-----------cCCceEEEEEECC-C-C---------CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-
Confidence 22 1122288999998 6 5 5666 8999999999986543222 2223 6788888887
Q ss_pred CCCeeEEccCCceEEEEeC
Q 019258 324 NPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~~~ 342 (343)
++..++.+++++.+.+|..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEecCCCcEEEEec
Confidence 4578888888889998875
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.2e-13 Score=114.88 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=167.7
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-Cc
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG-GG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-~~ 146 (343)
..+|+|.+|+ +...++++..+..|.||.....+..........|...|++++|. .+.|++|+.|..-.+|.... ++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4689999999 88889999999999999987555444444455799999999999 88999999999999999843 32
Q ss_pred --eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 147 --EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 147 --~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+...+.. +.. ..+++.|+| ++.|++|+..+.|.+|=+++ .+.... ..|- +......|.+++|||+. -+
T Consensus 90 WkptlvLlR-iNr-AAt~V~WsP~enkFAVgSgar~isVcy~E~---ENdWWV-sKhi--kkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 90 WKPTLVLLR-INR-AATCVKWSPKENKFAVGSGARLISVCYYEQ---ENDWWV-SKHI--KKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred eccceeEEE-ecc-ceeeEeecCcCceEEeccCccEEEEEEEec---ccceeh-hhhh--CCccccceeeeeccCCc-ce
Confidence 1222222 222 599999999 99999999999999998877 332211 1111 00011669999999985 57
Q ss_pred EEEEecCCcEEEEEccC-----Cce--eeeeecCCCCccccc-CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe
Q 019258 224 CLAGGSSGTVFAWDLRW-----QQQ--SIVLSGVGTGEAVTH-SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~-----~~~--~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~ 295 (343)
+++|+.|+.++++..-- ... |... ....+..+.+ ....+.|..+.|+|++. .|+-.+.|.+
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgs-k~PFG~lm~E~~~~ggwvh~v~fs~sG~----------~lawv~Hds~ 229 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS-KMPFGQLMSEASSSGGWVHGVLFSPSGN----------RLAWVGHDST 229 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCcc-CCcHHHHHHhhccCCCceeeeEeCCCCC----------EeeEecCCCc
Confidence 78999999999996421 110 0000 0000011111 13457899999999988 6999999999
Q ss_pred EEEEecCCC---cccccccccccceeeecCCCCCeeEEccCC
Q 019258 296 LAVVEQGEE---PFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 296 i~~~~~~~~---~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+.+-|.... +..+.....|..++.|-.+ ..+++++.+
T Consensus 230 v~~~da~~p~~~v~~~~~~~lP~ls~~~ise--~~vv~ag~~ 269 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVATAQLPLLSVSWISE--NSVVAAGYD 269 (361)
T ss_pred eEEeecCCCchhccchhhccCCceeeEeecC--CceeecCCC
Confidence 999887533 3344444678888888653 344444444
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.63 E-value=1.3e-13 Score=118.10 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=188.9
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC------CCCCCcc-CCCCCCeeEEEcc-CCCeEEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA------SLTPHSQ-WTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~------~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
-.+.|..+.+.+ ...+.++||+.|.+ +++|.+...+ ..+.+.. -.|...|+++.|+ ++++|++|
T Consensus 12 ~~~pv~s~dfq~---n~~~~laT~G~D~~-----iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQK---NSLNKLATAGGDKD-----IRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG 83 (434)
T ss_pred CCCceEEEEecc---CcccceecccCccc-----eeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence 345788888888 23349999999965 5688883321 1122333 3578899999999 99999999
Q ss_pred cCCCcEEEEEcc--------C-----ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 89 TLSGSLHVLSSA--------M-----QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 89 s~dg~v~v~~~~--------~-----~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
+.+|.|.+|... . .+...+....++|...|..++|. +..+++++.|.++++||+..+ +......
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~ 162 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD 162 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc
Confidence 999999999876 1 11123333445699999999999 888999999999999999999 4777777
Q ss_pred CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCee--EEec---ccCC--------CCCcccCeEEEEEcCC
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVL--QFKG---NFGS--------QGKASGMIHSVDIHPS 219 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~---~~~~--------~~~~~~~i~~v~~~p~ 219 (343)
.|.. .+..++|.| +..+++-+.|...+.+.+..++....+. .+.. ++++ .+.-......++|.|+
T Consensus 163 dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 163 DHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 6766 899999999 8888988989877777765411111111 0000 0000 0000144667889998
Q ss_pred CCeEEEEEe----cCCc-----EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC-------
Q 019258 220 RKHTCLAGG----SSGT-----VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR------- 283 (343)
Q Consensus 220 ~~~~~~sg~----~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~------- 283 (343)
|.. +++.. ..|. .++|+-.....|...+ ..-..+...+.|+|---.+.+..+.
T Consensus 242 G~l-lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l----------p~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 242 GSL-LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL----------PSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred CcE-EEcccceeeeCCceeeceeEeeccccccCceeec----------CCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 864 44432 1222 2445433333444443 3334556677777643222111111
Q ss_pred -ccceEEEecCCeEEEEecCC-Cccccccc--ccccceeeecCCCCCeeEEccCCceEEE
Q 019258 284 -VLPAMFCSEDGILAVVEQGE-EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 284 -~~~l~s~s~dg~i~~~~~~~-~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
. .++.-.....+++++... .+.-...+ -.+|..++|++ +|..|+-++-||.-.+
T Consensus 311 yr-lvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 311 YR-LVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred cc-eEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 1 122333455788888653 33333333 47899999998 6788888887875443
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=2e-12 Score=115.54 Aligned_cols=274 Identities=11% Similarity=0.106 Sum_probs=164.7
Q ss_pred EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCcc
Q 019258 37 AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFH 114 (343)
Q Consensus 37 l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h 114 (343)
+++...|+. |.+|++......+.+..++..+....+.++ +++.|++++ .++.|.+|++.....+...... ..
T Consensus 5 y~~~~~~~~-----I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~ 78 (330)
T PRK11028 5 YIASPESQQ-----IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PL 78 (330)
T ss_pred EEEcCCCCC-----EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cC
Confidence 444455543 669999543334455666666778889998 777776654 5889999999732222222211 12
Q ss_pred ccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCce---EEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEcc
Q 019258 115 VGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLR 186 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~ 186 (343)
.+....+.++ ++.+++++ .++.|.+|++++... ......... ...++.++| ++.+++++ .++.|.+||+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 2345678887 77777665 588999999974211 122222222 467788898 55665444 47999999997
Q ss_pred ccCCCCCee-----EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ce-eeeeecCCCCccccc
Q 019258 187 RAGSGGPVL-----QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQ-SIVLSGVGTGEAVTH 258 (343)
Q Consensus 187 ~~~~~~~~~-----~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~-~~~~~~~~~~~~~~~ 258 (343)
. ...+. ......+ .....++|+|+++.++++...+++|.+||+... .. .......... .
T Consensus 157 ~---~g~l~~~~~~~~~~~~g------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~----~ 223 (330)
T PRK11028 157 D---DGHLVAQEPAEVTTVEG------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA----D 223 (330)
T ss_pred C---CCcccccCCCceecCCC------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC----c
Confidence 6 22221 1111111 335678999999877666555999999999742 11 1111100000 0
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecCC--Cccccccc---ccccceeeecCCCCCeeEEcc
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQGE--EPFELLAE---PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~~--~~~~~~~~---~~~i~s~~~~~~~~~~l~~~~ 332 (343)
..+......+.++|++. +++++ ..++.|.+|+... ...++... ......+.++| +|++|++++
T Consensus 224 ~~~~~~~~~i~~~pdg~----------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~ 292 (330)
T PRK11028 224 FSDTRWAADIHITPDGR----------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAG 292 (330)
T ss_pred CCCCccceeEEECCCCC----------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEE
Confidence 01122334688999987 56665 4578899987632 22222222 22456889998 678888877
Q ss_pred C-CceEEEEeC
Q 019258 333 E-WESIAIVSR 342 (343)
Q Consensus 333 ~-~~~i~~~~~ 342 (343)
. ++.|.+|+.
T Consensus 293 ~~~~~v~v~~~ 303 (330)
T PRK11028 293 QKSHHISVYEI 303 (330)
T ss_pred ccCCcEEEEEE
Confidence 5 678988863
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.1e-15 Score=129.47 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=144.8
Q ss_pred CCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEc
Q 019258 111 SGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDL 185 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~ 185 (343)
..+|.+-|+++.|+ |..+++||+|-.+.+||.-..+....+--+|.. .|.+++|.| ...+++|..|..|+++|+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta-NIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA-NIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc-ceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 35799999999999 999999999999999999876533444344555 899999999 557888888999999999
Q ss_pred cccCC-------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc
Q 019258 186 RRAGS-------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH 258 (343)
Q Consensus 186 ~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (343)
..... ..+...+.-|. ..|..++..|++++.|.++++||+++-+|+|.+..-..-...+ ...++.
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht-------~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~-~~l~ny 196 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHT-------DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP-SILVNY 196 (758)
T ss_pred ccccccccccCccchhhhhhhhh-------hhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-HHHHHh
Confidence 74111 11222222222 6688999999999999999999999999999742110000000 000011
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-----cc---c-----------------cc--
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-----EL---L-----------------AE-- 311 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-----~~---~-----------------~~-- 311 (343)
...--...++..+|..+. +|+.|+.|-..+++|...... .. . ..
T Consensus 197 ~~~lielk~ltisp~rp~---------~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPY---------YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred chhhheeeeeeecCCCCc---------eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 122345688999999998 899999999888887211110 00 0 00
Q ss_pred -----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 -----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 -----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+..+.-+.++| +|..|+..-..+-+|+++
T Consensus 268 n~~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNP-NGTELLVSWGGEHVYLFD 301 (758)
T ss_pred ccccceeeeEEEEECC-CCcEEEEeeCCeEEEEEe
Confidence 12245567888 566777666677888774
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.9e-14 Score=124.59 Aligned_cols=254 Identities=11% Similarity=0.089 Sum_probs=176.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
-.|.|.|+.|.|. .++.|++|+.|..|.+||....... ..+..+|...|..-.|. ...+++++.||.|++=.+
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 3689999999999 9999999999999999999854433 33445687777666654 667999999999998877
Q ss_pred CCCceEE--EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 143 IGGGEFK--RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.....+. .....|.. .|..++..| ...|.+++.|+.+.-+|+|+ ..+-..+.....+. ...-..+.++.+|
T Consensus 217 ~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~---~~pa~~~~cr~~~~-~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ---DVPAEKFVCREADE-KERVGLYTIAVDP 291 (559)
T ss_pred ccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeecc---CCccceeeeeccCC-ccceeeeeEecCC
Confidence 5432332 12233444 788888888 78899999999999999999 44433332111111 0013588999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCcee-----eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQS-----IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
...+.+++|+.|..+++||.|.-... +.....+-. . ....-.|++++|+.++. .+++.-.|
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl---~-~d~~v~ITgl~Ysh~~s----------ElLaSYnD 357 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL---V-EDDPVNITGLVYSHDGS----------ELLASYND 357 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccc---c-ccCcccceeEEecCCcc----------ceeeeecc
Confidence 99889999999999999999864322 111100000 0 12234689999997766 46666777
Q ss_pred CeEEEEecCCC----cccc----------ccc---ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 294 GILAVVEQGEE----PFEL----------LAE---PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 294 g~i~~~~~~~~----~~~~----------~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
-.|++++.... +..+ +.. ...|..+.|.+....||++|+|.|.|.||+|
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 77888764311 1111 111 2458888888656699999999999999987
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.1e-14 Score=122.44 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=138.5
Q ss_pred eEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 75 SSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
..++|+ ++..|++|+.||++|||+...... ...+..|.+.|.+++|+ ++.+++.+.| ..++|+++++....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 567788 789999999999999999763322 22334699999999999 8899999999 8999999987433333
Q ss_pred EcCCCccceEEEEeCC-C---CEEEEEe--CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 152 YDGNGLVGFNCVKWAS-P---TEFVTGG--FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~---~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
........+..+.|.. + .+++.+. ..+.|+.||+..+....-+...+... .. ..|.+++.+++|. +++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~---~~--~siSsl~VS~dGk-f~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK---RF--KSISSLAVSDDGK-FLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh---cc--CcceeEEEcCCCc-EEE
Confidence 2222222455666665 2 3333333 36778888876522221111111111 01 4599999999986 568
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.|+.||.|.+++..+.+...... +.|...|+.|.|+|+.. .+++.|.|.+..+...
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~Pdsr----------~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSPDSR----------YLASVSSDNEAAVTKL 353 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcCCcC----------cccccccCCceeEEEE
Confidence 89999999999998765555544 78999999999999987 6888888888777554
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=4.2e-12 Score=107.79 Aligned_cols=233 Identities=13% Similarity=0.087 Sum_probs=164.0
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC--cEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG--SLHVL 97 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg--~v~v~ 97 (343)
.|+.+.|.. +...|..|+.|+ .++++.+..+. +.........|-.+-|+ ..+++..+.+. .++++
T Consensus 7 ti~~~~~Nq----d~~~lsvGs~~G------yk~~~~~~~~k--~~~~~~~~~~IvEmLFS-SSLvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 7 TINFIGFNQ----DSTLLSVGSKDG------YKIFSCSPFEK--CFSKDTEGVSIVEMLFS-SSLVAIVSIKQPRKLKVV 73 (391)
T ss_pred ceeeeeecc----ceeEEEccCCCc------eeEEecCchHH--hhcccCCCeEEEEeecc-cceeEEEecCCCceEEEE
Confidence 466666877 788899999885 45777743222 22222333356667776 55665555433 47788
Q ss_pred EccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCC--CccceEEEEeCC-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGN--GLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~t~ 174 (343)
++.+...+--.. ...+|.++..+.+.++.+=.+. |.+||+++-+ +...++.. ...++.+++.+. +.+++.=
T Consensus 74 ~~Kk~~~ICe~~----fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 74 HFKKKTTICEIF----FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EcccCceEEEEe----cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeeccCCCCceEEec
Confidence 777544442222 3348899999977777776665 9999999874 44443322 222467777666 4455543
Q ss_pred eC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-EEEEEccCCceeeeeecCC
Q 019258 175 GF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-VFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 175 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-v~iwd~~~~~~~~~~~~~~ 251 (343)
+. .|.|.+||+.. -+++..+..|. +++.+++|+|+|. ++|++++.|+ |+++.+..++....+.+.
T Consensus 148 ~s~t~GdV~l~d~~n---l~~v~~I~aH~-------~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG- 215 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTIN---LQPVNTINAHK-------GPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRG- 215 (391)
T ss_pred CCCCCceEEEEEccc---ceeeeEEEecC-------CceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCC-
Confidence 33 89999999988 78888888776 8899999999985 6799999998 789999887777776621
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.....|.+++|+|+.+ +|.+.|+.++|.+++.
T Consensus 216 --------~~~~~IySL~Fs~ds~----------~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 216 --------TYPVSIYSLSFSPDSQ----------FLAASSNTETVHIFKL 247 (391)
T ss_pred --------ceeeEEEEEEECCCCC----------eEEEecCCCeEEEEEe
Confidence 1246799999999988 6888899999999874
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=3e-12 Score=114.41 Aligned_cols=262 Identities=10% Similarity=0.067 Sum_probs=156.4
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.+.+++.......++++| ++++|..+++.. + .+..|++.++............+....+.|+ +++.|++++
T Consensus 27 ~~~~~~~~~~~~~l~~sp----d~~~lyv~~~~~--~--~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 27 LLQVVDVPGQVQPMVISP----DKRHLYVGVRPE--F--RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred eeeEEecCCCCccEEECC----CCCEEEEEECCC--C--cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence 455555556778888888 788877776532 2 3668888533222223333445566788898 777777766
Q ss_pred -CCCcEEEEEccCceee-eeeccCCccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEE----EEcCCCccce
Q 019258 90 -LSGSLHVLSSAMQVLL-SVDENSGFHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKR----VYDGNGLVGF 160 (343)
Q Consensus 90 -~dg~v~v~~~~~~~~~-~~~~~~~~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~----~~~~~~~~~v 160 (343)
.++.|.+|++.....+ ...... .+.....++.++ ++.++ +...++.|.+||+.+...+.. ..........
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 4889999999632111 111111 122345666676 66664 555779999999976322211 1111111257
Q ss_pred EEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCC---eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 161 NCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGP---VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
..+.|+| +..++++.. +++|.+||+.. .... +..+..... ..........+.++|+++.++++...++.|.+
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~--~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKD--PHGEIECVQTLDMMPA-DFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeC--CCCCEEEEEEEecCCC-cCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 7899999 666666665 99999999974 1122 222221110 00001234468899999887766556889999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQG 302 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~ 302 (343)
|++........+.+.. .. ......+.++|++. +|+++ ..+++|.+|+.+
T Consensus 255 ~~i~~~~~~~~~~~~~-------~~-~~~p~~~~~~~dg~----------~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQ-------PT-ETQPRGFNIDHSGK----------YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEE-------ec-cccCCceEECCCCC----------EEEEEEccCCcEEEEEEc
Confidence 9996544333322100 01 12345789999988 45544 458999998754
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3e-13 Score=120.60 Aligned_cols=256 Identities=15% Similarity=0.223 Sum_probs=171.9
Q ss_pred CCCCccCCCCCCeeEEEcc-CCCe-EEEEcCCCcEEEEEccCce----------ee---------------------eee
Q 019258 62 LTPHSQWTPPTRISSLSTS-HQSL-VAASTLSGSLHVLSSAMQV----------LL---------------------SVD 108 (343)
Q Consensus 62 ~~~~~~~~~~~~v~~v~~~-~~~~-l~~~s~dg~v~v~~~~~~~----------~~---------------------~~~ 108 (343)
.+++..+.++..-+.|..+ ++.+ +++|..-..|++||+.+.. .+ .+.
T Consensus 42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 3456678899999999999 6654 6777889999999985211 01 000
Q ss_pred ccCCccc-----cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcE
Q 019258 109 ENSGFHV-----GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGL 180 (343)
Q Consensus 109 ~~~~~h~-----~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i 180 (343)
.....|. ....++.++ ..-+++++....|.-.+++++. ...-+..... .+.++..++ .++|++|+.+|.|
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSG-ELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-cccccccccc-cceeeeecCccceEEecccCceE
Confidence 0011121 123455555 5566666666678888998884 4444443333 799999999 7788888889999
Q ss_pred EEEEccccCCCCCeeEEecccC---CC-CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFG---SQ-GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
..||.|. ...+..+..... +. ......|+++.|..+|- -+++|+.+|.|.|||+|. ..|+....
T Consensus 200 EfwDpR~---ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa-~~pl~~kd------- 267 (703)
T KOG2321|consen 200 EFWDPRD---KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA-SKPLLVKD------- 267 (703)
T ss_pred EEecchh---hhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc-CCceeecc-------
Confidence 9999998 343333321110 00 01114599999998864 468999999999999998 45555432
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-CcccccccccccceeeecCCCCCeeEEccCCc
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
+..+-+|..+.|.+.+.. .-+...+...+++|+... ++......-+.+|.|.+-| ++..++.+.++.
T Consensus 268 --h~~e~pi~~l~~~~~~~q---------~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p-~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 268 --HGYELPIKKLDWQDTDQQ---------NKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVP-GSGMFFTANESS 335 (703)
T ss_pred --cCCccceeeecccccCCC---------ceEEecchHHhhhcccccCCceeeccccCCcCceeeec-CCceEEEecCCC
Confidence 456778999999877442 223333445689999753 3444444456799999999 568999999999
Q ss_pred eEEEEeCC
Q 019258 336 SIAIVSRP 343 (343)
Q Consensus 336 ~i~~~~~~ 343 (343)
.|..+..|
T Consensus 336 ~m~~yyiP 343 (703)
T KOG2321|consen 336 KMHTYYIP 343 (703)
T ss_pred cceeEEcc
Confidence 99887765
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=126.32 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
.+|.|.|++++|+ ++.+|++|+.|-.+.|||.-.-..+..+. .+|.+.|.++.|- ...+++|..|..|+++|+
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4799999999999 99999999999999999987444444443 4799999999997 667889999999999999
Q ss_pred CCC---------ceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE------EecccCCCC
Q 019258 143 IGG---------GEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ------FKGNFGSQG 205 (343)
Q Consensus 143 ~~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~ 205 (343)
... ......+..|.. .|..++-.| ++.|.+++.||+|+=+|+|. +..+... +.......
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiRE--ph~c~p~~~~~~~l~ny~~~l- 200 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIRE--PHVCNPDEDCPSILVNYNPQL- 200 (758)
T ss_pred ccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccC--CccCCccccccHHHHHhchhh-
Confidence 751 123344445554 677777777 68999999999999999997 2221111 11111101
Q ss_pred CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 206 KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
-...|++.+|..+++|+.|+.|--.++||.|.
T Consensus 201 ---ielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 201 ---IELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred ---heeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 34789999999999999999999999999654
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-12 Score=124.98 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=158.9
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc--e--eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ--V--LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~--~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..|...|..++-+ ++.+|++|+.||+|++|+..+. + ..........-...+.++... ++.++.++.||.|.+
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 3566778888887 5589999999999999998721 1 111110100123456666555 899999999999999
Q ss_pred EECCCC--ce----EEEEEcCCCccc-eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 140 VSVIGG--GE----FKRVYDGNGLVG-FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 140 wd~~~~--~~----~~~~~~~~~~~~-v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
.+++.. .. +.+....+.... +...+|.. ...++.+..-+.|..||+|+ .+....++... +.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~---~~~~w~lk~~~-----~hG 1196 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM---RHDAWRLKNQL-----RHG 1196 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh---hhhHHhhhcCc-----ccc
Confidence 998762 11 112222222212 33444443 33788999999999999998 55555544222 228
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC--CCcCCCCCccce
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK--SSNISSSRVLPA 287 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~~~~~~~~~~~l 287 (343)
.|++++.+|.+. .++.|+..|.+.+||+|-. .|+.... .++..++..|..+|..+ . ..
T Consensus 1197 ~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~---------~P~~~~i~~v~~~~~~~~~S---------~~ 1256 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWE---------HPARAPIRHVWLCPTYPQES---------VS 1256 (1431)
T ss_pred ceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeeccc---------CcccCCcceEEeeccCCCCc---------eE
Confidence 899999999876 5679999999999999974 4444331 45678999999998766 3 45
Q ss_pred EEEe--cCCeEEEEecCC--Cccccccc-----------------c--cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 288 MFCS--EDGILAVVEQGE--EPFELLAE-----------------P--CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 288 ~s~s--~dg~i~~~~~~~--~~~~~~~~-----------------~--~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
++++ ..+.|-+|+.-. ....+... + .+.....+.. .+..++.|+.|.+|+.|+-
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccC
Confidence 5554 456788887421 11111111 1 1122233332 3578888889999999874
No 204
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.53 E-value=5.3e-12 Score=104.14 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=152.3
Q ss_pred EEecCCCCCCCCeEEEEeecCCCC-------CCceeeeeCCCCCCCCCCccC--CCCCCeeEEEcc----CCC-eEEEEc
Q 019258 24 VRWLPPLSPLSKLAVLAIYDTDAD-------SPSLETHSISLPASLTPHSQW--TPPTRISSLSTS----HQS-LVAAST 89 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s~D~~~~-------~~~l~~w~~~~~~~~~~~~~~--~~~~~v~~v~~~----~~~-~l~~~s 89 (343)
+.|.|.+ ...+.||.|.|+-+.+ .-++-++++.+..... +..+ ...+.+..|.|+ +++ .|+.+-
T Consensus 15 ~~~C~l~-~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~ 92 (339)
T KOG0280|consen 15 VPICCLC-HTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH 92 (339)
T ss_pred CCccccc-cccceEEEeeEEecCCCCchheeccceEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeecc
Confidence 4455532 2335888898865432 2235677775432221 1122 234568888887 445 577788
Q ss_pred CCCcEEEEEccCceeeeeeccCCc---cccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE--EEcCCCccceEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGF---HVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR--VYDGNGLVGFNC 162 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~---h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~--~~~~~~~~~v~~ 162 (343)
..|.|.+|.....+.....+.... -.....+++|+ +..+++.-.+|.+.+-+.... .+.. ....|+. .+.-
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~-E~Wt 170 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEF-EAWT 170 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccce-eeee
Confidence 899999998874332222221111 11124566776 788888888999885554433 2332 4556665 6777
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 163 VKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 163 ~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
.+|+. ++.+.+|++|+.+..||+|. +.+.+.+ .+.|. ..|.+|.-+|..+..+++|+.|..|++||.|
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~--p~~~i~~n~kvH~-------~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRI--PKTFIWHNSKVHT-------SGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecC--Ccceeeecceeee-------cceEEEecCCCCCceEEEeccccceeeeehh
Confidence 88877 78899999999999999996 4544443 33333 6699999998888889999999999999999
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+-.+|+.-. .-.+.||.+.++|...
T Consensus 242 nm~kPl~~~-----------~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 242 NMGKPLFKA-----------KVGGGVWRIKHHPEIF 266 (339)
T ss_pred cccCccccC-----------ccccceEEEEecchhh
Confidence 877776543 2358999999999765
No 205
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=3e-12 Score=107.70 Aligned_cols=263 Identities=12% Similarity=0.074 Sum_probs=167.0
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCC---------------CCCCCCCCccCCCCCCeeEEEcc-
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS---------------LPASLTPHSQWTPPTRISSLSTS- 80 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~---------------~~~~~~~~~~~~~~~~v~~v~~~- 80 (343)
..+-|++|.+.. .|++|+||-.++. +.++.-. -+++...+.++..+..|+.+.|.
T Consensus 24 eadiis~vef~~----~Ge~LatGdkgGR-----Vv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 24 EADIISAVEFDH----YGERLATGDKGGR-----VVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hhcceeeEEeec----ccceEeecCCCCe-----EEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 446799999999 8999999976653 2233221 11223345566667789999999
Q ss_pred --CCCeEEEEcCCCcEEEEEccCce--e----------------e---------------eeeccCCccccCeEEEEec-
Q 019258 81 --HQSLVAASTLSGSLHVLSSAMQV--L----------------L---------------SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 81 --~~~~l~~~s~dg~v~v~~~~~~~--~----------------~---------------~~~~~~~~h~~~v~~~~~~- 124 (343)
+...++..+.|.+|++|.+.... . + .......+|..-|++++++
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 55678888999999999985110 0 0 0011245688889999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEE--cCCCc----cceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVY--DGNGL----VGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~--~~~~~----~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
+.......+|=.|.+|.++-..+...+. .++.. .-|++..|+| .+.|+..+..|+|++-|+|+.........
T Consensus 175 D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 175 DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 6666666778889999986422222222 22221 1388999999 88999999999999999996111111111
Q ss_pred EecccCCCCCcc------cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC--cccccCCccccE---
Q 019258 197 FKGNFGSQGKAS------GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG--EAVTHSLSESEV--- 265 (343)
Q Consensus 197 ~~~~~~~~~~~~------~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~h~~~v--- 265 (343)
++....+...+. ..|..+.|+++|++++ +- +=-+|++||+.....|.....++.- ...-.......|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryil-sR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Ee-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 111100000000 4588899999998765 32 2268999999776777766632210 000000012223
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..++|+.++. .++|||..+..++++
T Consensus 333 Fec~~sg~~~----------~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 333 FECSWSGNDS----------YVMTGSYNNVFRVFN 357 (433)
T ss_pred eEEEEcCCcc----------eEecccccceEEEec
Confidence 6788887766 789999999888887
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=1e-11 Score=103.56 Aligned_cols=232 Identities=15% Similarity=0.112 Sum_probs=151.9
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccC--eEEEEecCCEEEEEe-CC------CcEEEEEC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP--ISGVDLTGSECVSVG-ED------GRVNLVSV 142 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~s~s-~d------g~v~~wd~ 142 (343)
...+++|. +..-+++|..+| .+||+.+...+..... .+.+. +..+-+..++++-.+ .. ..|.+||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~---~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ---FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc---cccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 44558898 777888888777 7999987321110010 11121 222222255555433 32 57999996
Q ss_pred CCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
...+ +...+.... .|.++.+.+.. ++.. ..+.|.+|.... ..+.+..+......+ ..++++-+-+...
T Consensus 83 ~k~~-~i~el~f~~--~I~~V~l~r~r-iVvv-l~~~I~VytF~~--n~k~l~~~et~~NPk-----GlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 83 LKER-CIIELSFNS--EIKAVKLRRDR-IVVV-LENKIYVYTFPD--NPKLLHVIETRSNPK-----GLCSLCPTSNKSL 150 (346)
T ss_pred ccCc-EEEEEEecc--ceeeEEEcCCe-EEEE-ecCeEEEEEcCC--ChhheeeeecccCCC-----ceEeecCCCCceE
Confidence 5554 333333333 59999987643 4433 578999999874 245555555333212 2445444333333
Q ss_pred EEEEEecCCcEEEEEccCCce-eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEe
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQ-SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVE 300 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~ 300 (343)
+..-|..-|.|.+-|+..... +-... .+|...|.+|+.+.++. .++|+|..|+ ||+|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I----------~AH~s~Iacv~Ln~~Gt----------~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSII----------NAHDSDIACVALNLQGT----------LVATASTKGTLIRIFD 210 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEE----------EcccCceeEEEEcCCcc----------EEEEeccCcEEEEEEE
Confidence 333466789999999987544 22334 68999999999999987 8999999998 68999
Q ss_pred cCC--Cccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 301 QGE--EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 301 ~~~--~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... ...|+... +..|++++++| +.++|++++|.|+++||.
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEE
Confidence 753 34555543 57899999999 569999999999999985
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=118.88 Aligned_cols=236 Identities=14% Similarity=0.135 Sum_probs=163.5
Q ss_pred ccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 11 QVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
++... .|.+.|++|+|+. ++++|++|+.|+. +-+|+-..+. +-...|...|.||.|. -...|+++
T Consensus 45 llqtLKgHKDtVycVAys~----dGkrFASG~aDK~-----VI~W~~klEG----~LkYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAK----DGKRFASGSADKS-----VIIWTSKLEG----ILKYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred cccccccccceEEEEEEcc----CCceeccCCCcee-----EEEecccccc----eeeeccCCeeeEeecCchHHHhhhc
Confidence 55555 4889999999999 9999999999964 4588874322 2345789999999999 45566666
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~ 165 (343)
+-+ ..-+|...... + .+. .....|.+.+|+ |.+++.|-.+|+|.+-+-.... -..+. .+....+|.+++|
T Consensus 112 sLs-dFglWS~~qK~-V--~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKS-V--SKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred chh-hccccChhhhh-H--Hhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEe
Confidence 544 45678665221 1 111 123578899998 9999999999999987654432 22222 2233348999999
Q ss_pred CC------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 166 AS------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 166 ~~------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
+| ...++......++.++.+.. +.+-.-+... -.-.|+.+.|+|.++ +.|+.|+.+.+|- |
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~-------FdP~CisYf~NGEy~-LiGGsdk~L~~fT-R 251 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALN-------FDPCCISYFTNGEYI-LLGGSDKQLSLFT-R 251 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecc----eeecccccCC-------CCchhheeccCCcEE-EEccCCCceEEEe-e
Confidence 98 23577777788888887744 3332211111 236799999999876 4688999999996 3
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+ -..... .....+||.|+.+|.++ .++.|+.||+|.-++
T Consensus 252 ~G-vrLGTv----------g~~D~WIWtV~~~PNsQ----------~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 252 DG-VRLGTV----------GEQDSWIWTVQAKPNSQ----------YVVVGCQDGTIACYN 291 (1081)
T ss_pred cC-eEEeec----------cccceeEEEEEEccCCc----------eEEEEEccCeeehhh
Confidence 32 222222 22567999999999988 689999999997655
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.8e-12 Score=108.11 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=148.1
Q ss_pred ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccC
Q 019258 115 VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
..+|+|.+|+ ...++.+-....|.+|...... .....+..|+. .+++++|.| .++|++++.|+.-.+|....++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3689999999 7788888888899999887653 34455566766 899999999 8899999999999999996622
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.=+|...+..+. ...++|.|+|.+ +.||+|+.-+.|.+|-++....-..-..+ ...+...|.++.
T Consensus 89 ~WkptlvLlRiN-------rAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhi-------kkPirStv~sld 153 (361)
T KOG1523|consen 89 TWKPTLVLLRIN-------RAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHI-------KKPIRSTVTSLD 153 (361)
T ss_pred eeccceeEEEec-------cceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhh-------CCccccceeeee
Confidence 222333333332 779999999986 57899999999999988763321110000 155788999999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecC-----CCc-----------cccccc----ccccceeeecCCCCCeeE
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-----EEP-----------FELLAE----PCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-----~~~-----------~~~~~~----~~~i~s~~~~~~~~~~l~ 329 (343)
|||.+- .|+++|.|+.++++..- +++ -+++.+ +.-+..+.|+| .|..|+
T Consensus 154 WhpnnV----------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~la 222 (361)
T KOG1523|consen 154 WHPNNV----------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLA 222 (361)
T ss_pred ccCCcc----------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEee
Confidence 999876 78999999999886421 111 022322 46799999998 679999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
-.+.|..+.+.+
T Consensus 223 wv~Hds~v~~~d 234 (361)
T KOG1523|consen 223 WVGHDSTVSFVD 234 (361)
T ss_pred EecCCCceEEee
Confidence 999999888764
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=9.4e-14 Score=128.53 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=169.2
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
+.|...|.|+.|. .+.++++|+.|..++||...+...+. ..++|.+.|+.++++ .-.++++|.|..|++|.+..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 5688889999999 88999999999999999977544433 335799999999998 56778999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+ .+..++.+|.. .|++++|+|-. +.+.||++++||.|-...-.++...+... + ..+.++.|...+. -+
T Consensus 264 ~-~pvsvLrghtg-avtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~--~----~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 264 G-APVSVLRGHTG-AVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTE--K----DLVDSILFENNGD-RF 331 (1113)
T ss_pred C-chHHHHhcccc-ceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccc--c----cceeeeecccccc-cc
Confidence 8 57777778887 89999999932 77889999999998300001111122111 1 4466777776664 36
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++|+.|+.-..|.+.... .+...+.=+.++.+... ..+++-.+-.+.+|+....
T Consensus 332 ~Tgs~d~ea~n~e~~~l~-----------------~~~~~lif~t~ssd~~~---------~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA-----------------WRSNLLIFVTRSSDLSS---------IVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred ccccCCcccccchhhHhh-----------------hhccceEEEeccccccc---------cceeeeeeeEeeeeecccc
Confidence 899999988888664321 12222222222222222 5677777888888987543
Q ss_pred --cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 305 --PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 305 --~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
...+......++-+++||.|.....+++-|+.+-||..
T Consensus 386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 33334445689999999999999999999999999864
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.48 E-value=1.9e-12 Score=114.67 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=125.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
.+.|+.++.||.+.+.+-. + .+.+..+.|.. .+.+-.|+| +.-|+++|.||.|++|.-. +-.-.++....
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----GMLRStl~Q~~-- 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-A-RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRS----GMLRSTVVQNE-- 145 (737)
T ss_pred cceEEEEcCCceEEEeccc-c-hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEecc----chHHHHHhhcC--
Confidence 4679999999999987633 3 35666667766 899999999 8889999999999999742 11111122111
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR 283 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~ 283 (343)
.+|.|++|.|+...++.+. .+.+.+=.+.....++.- .+|.+-|.++.|++.+.
T Consensus 146 -----~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~W-----------kAHDGiiL~~~W~~~s~-------- 199 (737)
T KOG1524|consen 146 -----ESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRW-----------RAHDGLVLSLSWSTQSN-------- 199 (737)
T ss_pred -----ceeEEEEECCCCCceEEec--CCeEEEeecccccceeEE-----------eccCcEEEEeecCcccc--------
Confidence 7799999999998887654 456777666655555554 47999999999999987
Q ss_pred ccceEEEecCCeEEEEecCC-CcccccccccccceeeecCCCCCeeE
Q 019258 284 VLPAMFCSEDGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 284 ~~~l~s~s~dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.++++++|-+.++||... ..+.-..+.-||.|++|+|+ ..+++
T Consensus 200 --lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 200 --IIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred --ceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 799999999999999754 34454555689999999995 34443
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.3e-11 Score=111.90 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=182.5
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC--CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP--HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~--~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
..|...+ .+++.+..-.+ ++-+|.++.+....+ .....|.-.+++.+++ .++.+++|..||.|.+|+
T Consensus 164 ~~I~~~~----~ge~~~i~~~~------~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 164 KSIVDNN----SGEFKGIVHMC------KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred ccEEEcC----CceEEEEEEee------eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence 3444455 55555555444 355888865332211 1223455568999999 899999999999999997
Q ss_pred ccC--c--eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 99 SAM--Q--VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 99 ~~~--~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
--. . ......+| |..+|+++.|+ |.+++|||..|.+.+|.+.+++ ++++..-.+ .|..+.++| +...
T Consensus 234 d~~~~~~~~t~t~lHW---H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs-~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHW---HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGS-PILHIVVSPDSDLY 307 (792)
T ss_pred ccccccccccceEEEe---cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCC-eeEEEEEcCCCCeE
Confidence 542 2 22233444 88999999999 9999999999999999999974 444443344 799999999 8888
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCC-CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS-QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
.....|++|.+-....-.....+..+...... +....+-.+.++++|. .+.++-.+..|.|.+||+-+......+...
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~ 386 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVC 386 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEE
Confidence 88888999999865320001111112211100 0001155778888883 334555678888988887654332111110
Q ss_pred CC---------------------------------------------------------CcccccCCccccEEEEEEeec
Q 019258 251 GT---------------------------------------------------------GEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 251 ~~---------------------------------------------------------~~~~~~~~h~~~v~~v~~~p~ 273 (343)
+. -.+.+...|+..+...++.+.
T Consensus 387 ~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~ 466 (792)
T KOG1963|consen 387 DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNP 466 (792)
T ss_pred eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecC
Confidence 00 001112345555444444432
Q ss_pred -CCCCcCCCCCccceEEEecCCeEEEEecC-------CCccccccc-----ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 274 -TKSSNISSSRVLPAMFCSEDGILAVVEQG-------EEPFELLAE-----PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 274 -~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-------~~~~~~~~~-----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
... ..+++|.||.+++|.-. ....|.+.. ..++++..|+. +|..|++|.+ +.|.+|
T Consensus 467 ~rs~---------~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dGslla~s~~-~~Itiw 535 (792)
T KOG1963|consen 467 TRSV---------RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DGSLLAVSFD-DTITIW 535 (792)
T ss_pred cccc---------eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CCcEEEEecC-CEEEEe
Confidence 222 57899999999999752 222333332 35789999997 6788888874 588888
Q ss_pred e
Q 019258 341 S 341 (343)
Q Consensus 341 ~ 341 (343)
+
T Consensus 536 d 536 (792)
T KOG1963|consen 536 D 536 (792)
T ss_pred c
Confidence 5
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.7e-13 Score=119.18 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccC
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAM 101 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~ 101 (343)
..+.+.. ++++++.|+.-+- |..+|.-. ..+.+.+.....|.++.|.....+++......++|||-..
T Consensus 133 Y~~~ytr----nGrhlllgGrKGH-----lAa~Dw~t---~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G 200 (545)
T KOG1272|consen 133 YHLDYTR----NGRHLLLGGRKGH-----LAAFDWVT---KKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG 200 (545)
T ss_pred eeeeecC----CccEEEecCCccc-----eeeeeccc---ceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC
Confidence 3445555 7888888865543 44555422 4556667777789999999555555556777899998763
Q ss_pred ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC
Q 019258 102 QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY 178 (343)
Q Consensus 102 ~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~ 178 (343)
.++...+ -...|..+.|. --.|++++..|.++--|+..++.+..+.-... .+..++-+| +..+-+|...|
T Consensus 201 -tElHClk----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G--~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 201 -TELHCLK----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG--RTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -cEEeehh----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC--ccchhhcCCccceEEEcCCCc
Confidence 3343332 22477888887 44567889999999999999864444433333 578888899 77888999999
Q ss_pred cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc
Q 019258 179 GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH 258 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (343)
+|.+|...+ .+|+..+..|. ++|.+|+++|+|.+ +++.+-|..++|||+|.-.++..+.
T Consensus 274 tVSlWSP~s---kePLvKiLcH~-------g~V~siAv~~~G~Y-MaTtG~Dr~~kIWDlR~~~ql~t~~---------- 332 (545)
T KOG1272|consen 274 TVSLWSPNS---KEPLVKILCHR-------GPVSSIAVDRGGRY-MATTGLDRKVKIWDLRNFYQLHTYR---------- 332 (545)
T ss_pred eEEecCCCC---cchHHHHHhcC-------CCcceEEECCCCcE-EeecccccceeEeeeccccccceee----------
Confidence 999999988 78888877665 89999999999875 5788999999999999977666655
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-----ccccccc--ccccceeeecCCCCCeeEEc
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-----PFELLAE--PCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-----~~~~~~~--~~~i~s~~~~~~~~~~l~~~ 331 (343)
. ..+...++++.. -++++|....+.+|.-... ....+.+ ..+|..+.|.|- ..|++-
T Consensus 333 t--p~~a~~ls~Sqk------------glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~--EDvLGI 396 (545)
T KOG1272|consen 333 T--PHPASNLSLSQK------------GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY--EDVLGI 396 (545)
T ss_pred c--CCCccccccccc------------cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH--HHeeec
Confidence 2 245667888743 4678888888999964322 1112222 468899999883 667776
Q ss_pred cCCceE
Q 019258 332 LEWESI 337 (343)
Q Consensus 332 ~~~~~i 337 (343)
+..+.|
T Consensus 397 GH~~G~ 402 (545)
T KOG1272|consen 397 GHAGGI 402 (545)
T ss_pred cccCCc
Confidence 666544
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=3.5e-10 Score=94.55 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=151.1
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC--CC-CeeEEEccCCCe-EEEEcCC------
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP--PT-RISSLSTSHQSL-VAASTLS------ 91 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~--~~-~v~~v~~~~~~~-l~~~s~d------ 91 (343)
-.++|.. +..-|+.|..++ .++++..- .+.....++ .| .+..|-| ..++ .++|+.+
T Consensus 9 lsvs~NQ----D~ScFava~~~G------friyn~~P---~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 9 LSVSFNQ----DHSCFAVATDTG------FRIYNCDP---FKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPP 74 (346)
T ss_pred eEEEEcc----CCceEEEEecCc------eEEEecCc---hhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCC
Confidence 3489998 777888886553 67888832 111111111 12 1222223 3344 3444443
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCC-ccceEEEEeCCCCE
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG-LVGFNCVKWASPTE 170 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 170 (343)
..|.|||-....++.... -..+|.++....+.++..-. +.|.+|...+..+..+.++... -.++.+++-..+..
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 489999955444443332 34689999998777777665 4699999975333444433222 11344444333333
Q ss_pred EEE--EeCCCcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-EEEEEccCCceee
Q 019258 171 FVT--GGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-VFAWDLRWQQQSI 245 (343)
Q Consensus 171 l~t--~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-v~iwd~~~~~~~~ 245 (343)
+++ |-.-|+|.|-|+.. .+ +...+..|. ..|.|++.+-+|. ++|+++..|+ |+|||.+++....
T Consensus 150 ~LafPg~k~GqvQi~dL~~---~~~~~p~~I~AH~-------s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLAS---TKPNAPSIINAHD-------SDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred EEEcCCCccceEEEEEhhh---cCcCCceEEEccc-------CceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEee
Confidence 333 33389999999987 33 346677776 8899999999885 6799999998 8999999977766
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.+ -...+.|.+|+|+|+.. +|+.+|+.|+|.++..
T Consensus 219 E~RR---------G~d~A~iy~iaFSp~~s----------~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 219 ELRR---------GVDRADIYCIAFSPNSS----------WLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeec---------CCchheEEEEEeCCCcc----------EEEEEcCCCeEEEEEe
Confidence 6652 12457799999999987 7999999999998764
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=4e-11 Score=101.71 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=152.7
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
-.+..++|+ .-..++++..|-.|++|+-....... ... .-...|++++|. +..|+.++..| |.+|..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~-Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTK-LKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCce-ecc--hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 357778888 66778999999999999987532222 221 245689999998 67788887776 89998753111
Q ss_pred ---E--------EEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEE
Q 019258 148 ---F--------KRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHS 213 (343)
Q Consensus 148 ---~--------~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 213 (343)
+ .+++.......|+++.|++ +..+++++. |..|.|||..+ +..+.-. ++. +.+.-
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt---g~~~pL~~~gl--------gg~sl 243 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT---GQKIPLIPKGL--------GGFSL 243 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC---CCcccccccCC--------Cceee
Confidence 1 1222223334799999999 888888887 88999999988 3322111 111 56889
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCc--eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQ--QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS 291 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s 291 (343)
+.|+|++..+| +++-|+..++|...+.- .+..+ -.+.|..-+|+|.+.. .|++++
T Consensus 244 LkwSPdgd~lf-aAt~davfrlw~e~q~wt~erw~l-------------gsgrvqtacWspcGsf---------LLf~~s 300 (445)
T KOG2139|consen 244 LKWSPDGDVLF-AATCDAVFRLWQENQSWTKERWIL-------------GSGRVQTACWSPCGSF---------LLFACS 300 (445)
T ss_pred EEEcCCCCEEE-Eecccceeeeehhcccceecceec-------------cCCceeeeeecCCCCE---------EEEEEc
Confidence 99999998765 56889999999654321 12222 2458999999999997 788888
Q ss_pred cCCeEEEEecCCCccccc--------------------cc----ccccceeeecCCCCCeeEEccCC
Q 019258 292 EDGILAVVEQGEEPFELL--------------------AE----PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 292 ~dg~i~~~~~~~~~~~~~--------------------~~----~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
..-.|+-.....+..++. .. .....+++|+| .|.+|+.....
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg 366 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKG 366 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcC
Confidence 887777644322221111 00 14688999998 67888876644
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.8e-10 Score=97.76 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=167.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC--CCCeeEEEcc--CCCeEEEEcCCCcEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP--PTRISSLSTS--HQSLVAASTLSGSLH 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~--~~~v~~v~~~--~~~~l~~~s~dg~v~ 95 (343)
.+..++|+| .-.-|+.+..|. .+++++-+... .+.+++ ...|.|++|- ...-|+.|+..| |.
T Consensus 100 dlr~~aWhq----H~~~fava~ndd-----vVriy~ksst~----pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 100 DLRGVAWHQ----HIIAFAVATNDD-----VVRIYDKSSTC----PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred ceeeEeech----hhhhhhhhccCc-----EEEEeccCCCC----CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 467789999 445566666664 36788875522 222333 4579999998 556788888776 89
Q ss_pred EEEccCc----eee--------eeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEE-cCCCccc
Q 019258 96 VLSSAMQ----VLL--------SVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVY-DGNGLVG 159 (343)
Q Consensus 96 v~~~~~~----~~~--------~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~-~~~~~~~ 159 (343)
+|..... ..+ ++.+. .+| .+|++++|+ +..+++++ .|..+.+||.+++. ...+. .+.. .
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~-pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~glg--g 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQD-PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKGLG--G 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeC-CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccCCC--c
Confidence 9987621 111 11111 123 689999999 78888877 56789999999974 33333 2333 5
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
+.-+.|+| ++.|+++.-|+..++|...+ .-.......+ . +.|...+|+|.|+.++.+.+.+-.++-...
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q--~wt~erw~lg-s-------grvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQ--SWTKERWILG-S-------GRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcc--cceecceecc-C-------CceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 99999999 89999999999999996644 1111111211 1 679999999999999888776555443322
Q ss_pred cCCceeeeeec----------CCCCcccc---cCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe--------EE
Q 019258 239 RWQQQSIVLSG----------VGTGEAVT---HSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--------LA 297 (343)
Q Consensus 239 ~~~~~~~~~~~----------~~~~~~~~---~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--------i~ 297 (343)
.+++....+ .+....+. .....++.-+|+|+|.+. +|+..-..+. |.
T Consensus 311 --~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe----------yLav~fKg~~~v~~~k~~i~ 378 (445)
T KOG2139|consen 311 --DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE----------YLAVIFKGQSFVLLCKLHIS 378 (445)
T ss_pred --cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC----------EEEEEEcCCchhhhhhhhhh
Confidence 121111110 01111100 112346788999999988 5665543332 34
Q ss_pred EEecCCC-cccccc------cccccceeeecCCCCCeeEEccCCceEE
Q 019258 298 VVEQGEE-PFELLA------EPCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 298 ~~~~~~~-~~~~~~------~~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
.|+.... +.++.. ++...-+|-.+-+.+..|.-+=+.|+|.
T Consensus 379 ~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 379 RFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred hhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 4665433 334331 1233445555544555555554445443
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=7.9e-11 Score=110.14 Aligned_cols=251 Identities=14% Similarity=0.119 Sum_probs=166.8
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--CCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--PASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
..+.+++.+| .++++|+|-.|+. |.+|.-.. +....+...-=|..+|+++.|+ ++.+|++|+..|.+.
T Consensus 206 f~~t~~~~sp----n~~~~Aa~d~dGr-----I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 206 FNITCVALSP----NERYLAAGDSDGR-----ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred ccceeEEecc----ccceEEEeccCCc-----EEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 3389999999 8899999877753 66887633 2323222223367899999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEEEEcC------CCccceEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKRVYDG------NGLVGFNCVK 164 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~------~~~~~v~~~~ 164 (343)
+|.+.+++ .++.+. -.++|..+.++ ++.......|..|.+-...+-. .+..+... ....-.+.++
T Consensus 277 ~Wq~~T~~-kqfLPR---Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 277 LWQLETGK-KQFLPR---LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred EEeecCCC-cccccc---cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE
Confidence 99998655 222322 34689999998 7788888889999988764321 01111000 0111356778
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc--CCCCC-----------------------------------
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF--GSQGK----------------------------------- 206 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~----------------------------------- 206 (343)
++| .+.++-.+..+.|.+||+-+ .+.+.++.... ...+.
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~t---d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYT---DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccc---cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 888 77788888899999998865 33222221100 00000
Q ss_pred ------------------------cc-cCeEEEEEcCCCCeEEEEEecCCcEEEEEc------cCCceeeeeecCCCCcc
Q 019258 207 ------------------------AS-GMIHSVDIHPSRKHTCLAGGSSGTVFAWDL------RWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 207 ------------------------~~-~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~------~~~~~~~~~~~~~~~~~ 255 (343)
|. ..+..+..+|.....+++++.||.+++|-+ +..........++
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~---- 505 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG---- 505 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee----
Confidence 00 223334445544446789999999999987 3322222222212
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|..++.+.+|+.++. ++++|.|++|.+||+..
T Consensus 506 ---sy~k~~i~a~~fs~dGs-----------lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 506 ---SYHKTPITALCFSQDGS-----------LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ---ccccCcccchhhcCCCc-----------EEEEecCCEEEEecCCC
Confidence 45788999999998874 89999999999999876
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.7e-11 Score=111.03 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=133.3
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+..|.+||........+ ..|...+.+..|+ ++.++.++.+ ..|.+||+.++. ...+..... .....+|
T Consensus 183 ~~~i~i~d~dg~~~~~l----t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g--~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQFIV----NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRG--HNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCceEe----ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCC--ccCceeE
Confidence 46888998864332221 2366789999999 8888877654 369999998863 322322222 2446899
Q ss_pred CC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+| +..|+.+. .++.+.||.+.. .+..+..+..+. ..+....|+|++..+++++..+|...+|++.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~--~~~~~~~lt~~~-------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGA--NGGTPSQLTSGA-------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEEC--CCCCeEeeccCC-------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99 66676654 688777764432 123444554332 55778999999988877776788889998754333
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQ 323 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~ 323 (343)
..... .+.. ....|+|++. .++..+.++ +..|+........+.......+..|+|
T Consensus 327 ~~~~l-----------~~~~--~~~~~SpDG~----------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sP- 381 (429)
T PRK01742 327 GASLV-----------GGRG--YSAQISADGK----------TLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISP- 381 (429)
T ss_pred CeEEe-----------cCCC--CCccCCCCCC----------EEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECC-
Confidence 22222 1222 4578999987 576666655 555776443323333323346778999
Q ss_pred CCCeeEEccCCceEEEE
Q 019258 324 NPSDVICSLEWESIAIV 340 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~ 340 (343)
+|..|+.++.++.+.+|
T Consensus 382 dG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCEEEEEEcCCCceEE
Confidence 67899988877766554
No 218
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=3.5e-11 Score=101.43 Aligned_cols=253 Identities=13% Similarity=0.203 Sum_probs=175.3
Q ss_pred CCCCccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe
Q 019258 7 RTPPQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL 84 (343)
Q Consensus 7 ~~~~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~ 84 (343)
.+|..++++ .+.+.|+..--.| ..+-+.+.|.|.. +++|---+..+.-+--....+.+++++.+. +...
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drt-----vrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRT-----VRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc----CCCCeEEccccce-----eeeEEeccccccCchhhhhCCCCceEeeeeccceE
Confidence 345566666 4667788888888 5667889998865 557754322222222234567889999999 8889
Q ss_pred EEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-EEcCCCccce
Q 019258 85 VAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR-VYDGNGLVGF 160 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~-~~~~~~~~~v 160 (343)
|+.|-.+|++.-+.+. ..+.+...+....|...+..+-++ .+.+++.+.|..+..--.+.+..+-. .+....
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~---- 158 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA---- 158 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC----
Confidence 9999999999998876 334445555555799999999998 78899999998776655555432211 111111
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++.+.-. ....|...+.|.+--+.. +...++.++.++. +++.+++|.|.. .++.+|.+|..|.+||+--
T Consensus 159 t~~~~d~~-~~fvGd~~gqvt~lr~~~-~~~~~i~~~~~h~-------~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 159 SALQFDAL-YAFVGDHSGQITMLKLEQ-NGCQLITTFNGHT-------GEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred CCCceeeE-EEEecccccceEEEEEee-cCCceEEEEcCcc-------cceEEEEEcCCC-cEEEeccccCceEEEeccC
Confidence 11111111 344455567776665554 1235566777776 889999999965 5778999999999999976
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
........ .+|...|..+.+-+... ++++|++||.|-+|+.+
T Consensus 229 ~~g~~~el----------~gh~~kV~~l~~~~~t~----------~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 229 RKGTAYEL----------QGHNDKVQALSYAQHTR----------QLISCGEDGGIVVWNMN 270 (404)
T ss_pred Ccceeeee----------ccchhhhhhhhhhhhhe----------eeeeccCCCeEEEEecc
Confidence 55555555 67889999998887766 79999999999998854
No 219
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.2e-12 Score=128.07 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=139.2
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|..+.=+| ...+.+||+.|+. +++|.-.......+..+.+. +.|+.+.|+ .++.+..+..||.+.+|.
T Consensus 2210 ~v~r~~sHp----~~~~Yltgs~dgs-----v~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2210 NVRRMTSHP----SDPYYLTGSQDGS-----VRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeeecCCC----CCceEEecCCCce-----EEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecc
Confidence 344455555 5678899999964 55777655444444555455 889999999 899999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~ 174 (343)
.. +.....+. -|....+++.|-+..+++++ .++.+.+||..-......+-..|.. +++++++.| ...|++|
T Consensus 2280 ~~---pk~~~s~q-chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS---PKPYTSWQ-CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-GATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC---Ccceeccc-cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCC-CceEEEEcCcceEEEec
Confidence 87 23333332 47788888888877777765 6788999998543111111134555 799999999 8899999
Q ss_pred eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
|.+|.|++||+|+ .+...++. . ++ .+..|++|+..|.++||++........+.
T Consensus 2355 gr~G~v~l~D~rq---rql~h~~~----------~------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQ---RQLRHTFQ----------A------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHH---HHHHHHhh----------h------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999 55444444 1 33 24578899999999999998764444443
No 220
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.38 E-value=1.8e-11 Score=105.10 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=124.8
Q ss_pred CCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 70 PPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 70 ~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
...+|.++.|. ..+.|++|+.|..|++|.+... ..+........|...|+++.|+ |+.++||+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34578899998 3448999999999999998722 2344455566799999999999 889999999999999
Q ss_pred EECC--------C-----C--ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 140 VSVI--------G-----G--GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 140 wd~~--------~-----~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
|... + . ..+.+...+|.. .++.++|.+ +..+++++-|+.+++||++. +.....+..|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~-- 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHA---GQLLAILDDHE-- 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEecc---ceeEeeccccc--
Confidence 9765 2 1 123444555655 799999999 88899999999999999999 77776666655
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
..+..++|.|-.++ +++=+.|...+.+.+..
T Consensus 166 -----~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 166 -----HYVQGVAWDPLNQY-VASKSSDRHPEGFSAKL 196 (434)
T ss_pred -----cccceeecchhhhh-hhhhccCcccceeeeee
Confidence 77999999998765 46777787777776644
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=112.89 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=169.1
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
-..+.|+ ++..|+.|+.-|++..+|..+.....-. .-...|.++.|. ...++.+..-.-+.+||-..- .+.++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee----ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeeh
Confidence 4577888 8999999999999999998854422111 122467888887 777777788888999996543 34444
Q ss_pred EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..+. .+..+.|.| .-+|++++..|.++.-|+.. ++.+..+.... +.+..++-+|-. -++-.|..+
T Consensus 207 -k~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~---GklVa~~~t~~-------G~~~vm~qNP~N-aVih~Ghsn 272 (545)
T KOG1272|consen 207 -KRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVST---GKLVASIRTGA-------GRTDVMKQNPYN-AVIHLGHSN 272 (545)
T ss_pred -hhcC--chhhhcccchhheeeecccCCceEEEeech---hhhhHHHHccC-------CccchhhcCCcc-ceEEEcCCC
Confidence 3344 599999999 77788888999999999998 88877766443 778888889975 466789999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFEL 308 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~ 308 (343)
|+|.+|.... ..|+..+ .-|.++|.+|++++.+. +++|++.|..+++||... ++...
T Consensus 273 GtVSlWSP~s-kePLvKi----------LcH~g~V~siAv~~~G~----------YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 273 GTVSLWSPNS-KEPLVKI----------LCHRGPVSSIAVDRGGR----------YMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ceEEecCCCC-cchHHHH----------HhcCCCcceEEECCCCc----------EEeecccccceeEeeecccccccee
Confidence 9999999876 4444443 45999999999999988 899999999999999753 22222
Q ss_pred cccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 309 LAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 309 ~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .+.+.+.++++. ...|++|. ...+.||+
T Consensus 332 ~-tp~~a~~ls~Sq--kglLA~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 332 R-TPHPASNLSLSQ--KGLLALSY-GDHVQIWK 360 (545)
T ss_pred e-cCCCcccccccc--ccceeeec-CCeeeeeh
Confidence 2 267788899986 25666664 44677775
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.3e-10 Score=97.98 Aligned_cols=248 Identities=15% Similarity=0.116 Sum_probs=177.8
Q ss_pred cCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeee---ccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 67 QWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVD---ENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 67 ~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
.+....+|.++.|. ....|...+.+..+..+.+.+....... .......++|.++......+++|-.+|.+.+|
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVR 130 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEE
Confidence 34555678999998 3345666557778887777643322111 11223456788887778899999999999999
Q ss_pred ECCCCc----eEEEEEcCCCccceEEEEeCC--CCEEEEEeCC--CcEEEEEccccCCCCCeeEEecccCCCC--CcccC
Q 019258 141 SVIGGG----EFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFG--YGLQWWDLRRAGSGGPVLQFKGNFGSQG--KASGM 210 (343)
Q Consensus 141 d~~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~ 210 (343)
....+. ..... ..+. .+..+.-.+ +..+++||.. ..+++||+.+ .+++.+.+......- --+-+
T Consensus 131 ~~k~~d~hss~l~~l-a~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKL-ATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred eccCCccccccceee-ecCC--ceeeeccCCCCCceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeee
Confidence 987321 22222 2233 477777777 6667778888 8999999998 566665543322110 01256
Q ss_pred eEEEEEcCC-CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 211 IHSVDIHPS-RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 211 i~~v~~~p~-~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
++.+.|-|. ..+.|++++.-+.|++||.+.++.|+... ..-+.+|.++...|.+. ++++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f----------d~~E~~is~~~l~p~gn----------~Iy~ 264 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF----------DFLENPISSTGLTPSGN----------FIYT 264 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEe----------ccccCcceeeeecCCCc----------EEEE
Confidence 788888774 14678999999999999999999998877 45688999999999988 7999
Q ss_pred EecCCeEEEEecCCCcccc---cccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 290 CSEDGILAVVEQGEEPFEL---LAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 290 ~s~dg~i~~~~~~~~~~~~---~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+-.-|.|..+|......-. ..-...|.++-.|| .+.+|++++-|.-++|+.
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHD 318 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEee
Confidence 9999999999876543221 22257899999999 458999999999888875
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=1.5e-10 Score=102.96 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=136.5
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeee-eeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC------------
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLS-VDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG------------ 144 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~-~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~------------ 144 (343)
.+--|+.|-..|.|.+.+....+... +.+.....+..|+++.|- ...|+.+-.+|.+.++|...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 44457888888889888765321111 111111234689999998 66788888999999997521
Q ss_pred --Cce-------------EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 145 --GGE-------------FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 145 --~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
+.. ++..+..... .|...+|++ +..|++.+.||.+||||... .+.+-.++...
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt---~eLlg~mkSYF------- 332 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDT---QELLGVMKSYF------- 332 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccH---HHHHHHHHhhc-------
Confidence 000 0000111112 588889999 88999999999999999977 44443344333
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC------------
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS------------ 276 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~------------ 276 (343)
+...|++|+|+|.+ +++|++|-.|.+|.+... ..+..- ++|..+|..|+|+|....
T Consensus 333 GGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er-RVVARG----------qGHkSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER-RVVARG----------QGHKSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred cceEEEEEcCCccE-EEecCCcceEEEEEeccc-eEEEec----------cccccceeeEeecccccccccccccccccc
Confidence 67999999999975 579999999999999763 333332 789999999999952110
Q ss_pred ---------------CcCCCC-----------CccceEEEecCCeEEEEecCCC
Q 019258 277 ---------------SNISSS-----------RVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 277 ---------------~~~~~~-----------~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-++.++ -.+.+-+.+.|-.+.+||..+.
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 011111 2345788899999999997654
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.3e-10 Score=104.74 Aligned_cols=227 Identities=16% Similarity=0.092 Sum_probs=140.8
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT 124 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 124 (343)
..|++||...... .....+...+.+..|+ +++.|+..+.+ ..|++|++..++...+... .+| ...+.|+
T Consensus 184 ~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFS 256 (429)
T ss_pred EEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeEC
Confidence 4688999865332 2223566789999999 88888877653 3699999875543332222 123 3357887
Q ss_pred --CCEEEEE-eCCCcEEEE--ECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEE
Q 019258 125 --GSECVSV-GEDGRVNLV--SVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 125 --~~~~~s~-s~dg~v~~w--d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
++.++.+ +.+|.+.+| |+.++ ...++.. +.. .+....|+| +..++.++ .++...+|++.. .+.....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~--~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGG-TPSQLTS-GAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSA--SGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCC-CeEeecc-CCC-CcCCEEECCCCCEEEEEECCCCCceEEEEEC--CCCCeEEe
Confidence 7777765 468876665 55555 3444443 332 477899999 66555554 578899998865 22322222
Q ss_pred ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 198 KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 198 ~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
.+. + ....|+|++..++++ +.+ .+.+||+.++... .+. ..+ ....+.|+|++.
T Consensus 332 -~~~-------~--~~~~~SpDG~~ia~~-~~~-~i~~~Dl~~g~~~-~lt----------~~~--~~~~~~~sPdG~-- 384 (429)
T PRK01742 332 -GGR-------G--YSAQISADGKTLVMI-NGD-NVVKQDLTSGSTE-VLS----------STF--LDESPSISPNGI-- 384 (429)
T ss_pred -cCC-------C--CCccCCCCCCEEEEE-cCC-CEEEEECCCCCeE-Eec----------CCC--CCCCceECCCCC--
Confidence 211 2 357899999876544 444 4666999875432 221 111 234678999988
Q ss_pred cCCCCCccceEEEecCCeEEEEe---cCCC-cccccccccccceeeecC
Q 019258 278 NISSSRVLPAMFCSEDGILAVVE---QGEE-PFELLAEPCAINSFDIDP 322 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~~---~~~~-~~~~~~~~~~i~s~~~~~ 322 (343)
.+++++.+|...+|. .... ...+......+...+|+|
T Consensus 385 --------~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 385 --------MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred --------EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 788888888776654 3332 333433345678888887
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=7.7e-11 Score=99.40 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=163.1
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce--eeeeeccCCccc------------cCeEEEEec----CCEEE
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV--LLSVDENSGFHV------------GPISGVDLT----GSECV 129 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~--~~~~~~~~~~h~------------~~v~~~~~~----~~~~~ 129 (343)
....-|.++.|. .+++|++|..+|.|.+|.-.... +.........|. .+|+.+.|. ...|+
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 344568899999 99999999999999999765211 222222222232 368888887 56888
Q ss_pred EEeCCCcEEEEECCCCc----------------------------------eEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 130 SVGEDGRVNLVSVIGGG----------------------------------EFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 130 s~s~dg~v~~wd~~~~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
....|.+|++|.+.... .+++.+...+...|.+++++.....+-..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 99999999999874311 12233333344468889988844455556
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee---eeee---c
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS---IVLS---G 249 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~---~ 249 (343)
+|-.|.+|.+..-+..-.+..++.+. +..-..-|++..|||...++|+-.++.|+|++.|+|....- ..+. .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~n--mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPAN--MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccC--HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 79999999998711112222333332 11111558999999998888888999999999999964211 0111 0
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccc--------------ccc
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLA--------------EPC 313 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~--------------~~~ 313 (343)
.+.+... ...--..|.++.|++.+. ++++-. =-+|.+||.+.+ +.+.+. ..+
T Consensus 261 dp~~rsf-fseiIsSISDvKFs~sGr----------yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 261 DPSSRSF-FSEIISSISDVKFSHSGR----------YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred CCcchhh-HHHHhhhhhceEEccCCc----------EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 0000000 011235789999998877 555532 368899997433 322222 123
Q ss_pred ccc--eeeecCCCCCeeEEccCCceEEEEe
Q 019258 314 AIN--SFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 314 ~i~--s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... .+.|++ ++.++++|+=+..++++.
T Consensus 329 IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 329 IFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hhheeEEEEcC-CcceEecccccceEEEec
Confidence 233 346777 458999999888888886
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.5e-10 Score=97.09 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=128.8
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCee
Q 019258 119 SGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 119 ~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 195 (343)
..++++ +..+++++.||++++|+..+.........++. .|.++.|+| +..|++.+.| ..++|+..+ +.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~--eV~DL~FS~dgk~lasig~d-~~~VW~~~~---g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA--EVKDLDFSPDGKFLASIGAD-SARVWSVNT---GAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC--ccccceeCCCCcEEEEecCC-ceEEEEecc---Cchhh
Confidence 445555 78999999999999999776543444444444 599999999 7789999999 999999999 66665
Q ss_pred EEecccCCCCCcccCeEEEEEcCCC--CeE--EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSR--KHT--CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~--~~~--~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
....... . .....+.|.-+. +.+ ++.-..-+.|..||+...... .++..- . ...-...|.+++.+
T Consensus 222 ~~t~~~k-~----~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~--~---~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 222 RKTPFSK-D----EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR--K---KIKRFKSISSLAVS 290 (398)
T ss_pred hcCCccc-c----hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh--h---hhhccCcceeEEEc
Confidence 5442221 1 335556665443 222 233334556777776432221 110000 0 01223579999999
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-c--cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-A--EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+++. +++-++.||.|.+++........+ . +...|..+.|+|+ .++++.-+.+..+.+++
T Consensus 291 ~dGk----------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 291 DDGK----------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTK 352 (398)
T ss_pred CCCc----------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC-cCcccccccCCceeEEE
Confidence 9988 799999999999988754332222 2 2357999999995 58888877776666654
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2.8e-10 Score=101.96 Aligned_cols=244 Identities=13% Similarity=0.120 Sum_probs=156.0
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEE-EEeecCCCCCCceeeeeCCC---------CC----------CCCC------
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAV-LAIYDTDADSPSLETHSISL---------PA----------SLTP------ 64 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~-t~s~D~~~~~~~l~~w~~~~---------~~----------~~~~------ 64 (343)
.+.-|.++..-+.|.-+| ++.++. ||.|- ..|+++++.. +. ....
T Consensus 44 LiQdfe~p~ast~ik~s~----DGqY~lAtG~YK-----P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSP----DGQYLLATGTYK-----PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN 114 (703)
T ss_pred HHHhcCCccccceeEecC----CCcEEEEecccC-----CceEEEEcccceeeeeecccccceeEEEeccchhhheEeec
Confidence 445566777788899999 776655 55544 4577887722 00 0000
Q ss_pred ------------CccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE
Q 019258 65 ------------HSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC 128 (343)
Q Consensus 65 ------------~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~ 128 (343)
...+..+..-.+|+++ .-+++++|+ ...|+-+++..++-+.... ...+.++++..+ ...|
T Consensus 115 DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 115 DRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLL 190 (703)
T ss_pred CceeeehhhcCeeeeeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecCccceE
Confidence 0011122334556666 334455444 4456666666555444333 244789999999 6677
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEcC-----C----CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 129 VSVGEDGRVNLVSVIGGGEFKRVYDG-----N----GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 129 ~s~s~dg~v~~wd~~~~~~~~~~~~~-----~----~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
++|+.||.|-.||.+....+..+... + ....|++++|.. +-.++.|+.+|.+.|||+|. .+|+.. +
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa---~~pl~~-k 266 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA---SKPLLV-K 266 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc---CCceee-c
Confidence 78888999999999875433332211 1 112599999998 77899999999999999999 566543 2
Q ss_pred cccCCCCCcccCeEEEEEcCCCC-eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRK-HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~-~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
.|.. .-+|..++|.+.+. ..+ ...+...++|||-.++. +.... + -...++.+++-|+..
T Consensus 267 dh~~-----e~pi~~l~~~~~~~q~~v-~S~Dk~~~kiWd~~~Gk-~~asi----------E-pt~~lND~C~~p~sG-- 326 (703)
T KOG2321|consen 267 DHGY-----ELPIKKLDWQDTDQQNKV-VSMDKRILKIWDECTGK-PMASI----------E-PTSDLNDFCFVPGSG-- 326 (703)
T ss_pred ccCC-----ccceeeecccccCCCceE-EecchHHhhhcccccCC-ceeec----------c-ccCCcCceeeecCCc--
Confidence 2221 16799999987643 344 34566789999987754 33333 1 245599999999887
Q ss_pred cCCCCCccceEEEecCCeEEEE
Q 019258 278 NISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
.++++-+++.|-.+
T Consensus 327 --------m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 327 --------MFFTANESSKMHTY 340 (703)
T ss_pred --------eEEEecCCCcceeE
Confidence 68888888776543
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=2.3e-10 Score=94.64 Aligned_cols=249 Identities=16% Similarity=0.106 Sum_probs=152.1
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCCCCC-CeeEEEcc-CCCeEEEEcCCCc
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWTPPT-RISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~-~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..+..|.|..-+ .++. ++.+-.+-. + .|.++....... ...+....... ...++.|+ .+..++++-++|.
T Consensus 70 s~~~dm~w~~~~-~~g~-~~l~~a~a~-G--~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 70 STEFDMLWRIRE-TDGD-FNLLDAHAR-G--QIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGS 144 (339)
T ss_pred cccceeeeeecc-CCcc-ceeeecccc-c--eEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCc
Confidence 346778888732 1233 233322221 2 255666643221 11122222211 35567777 6677999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceE-EEEEcCCCccceEEEEeCC--
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEF-KRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~-- 167 (343)
+.+-+...........+ +.|.-++.-..|+ .+.+.+||+|+.+..||++-++.. .+-..-|.. +|.++.-+|
T Consensus 145 ~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~ 222 (339)
T KOG0280|consen 145 ISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPK 222 (339)
T ss_pred EEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCC
Confidence 98444332222222233 4798899999888 678899999999999999943222 221223444 799998887
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee-e
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI-V 246 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~-~ 246 (343)
+..++||++|-.|++||.|+ -++|+..-... +.|..+..+|...+.++.++--.-+++-++....... .
T Consensus 223 ~~~I~TGsYDe~i~~~DtRn--m~kPl~~~~v~--------GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~ 292 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRN--MGKPLFKAKVG--------GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI 292 (339)
T ss_pred CceEEEeccccceeeeehhc--ccCccccCccc--------cceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe
Confidence 78999999999999999996 47777654322 6699999999866555555544456777765432221 1
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEE-EEec
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILA-VVEQ 301 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~-~~~~ 301 (343)
... .++.|.+-+..-.|..... .++||| .|..|+ +|-.
T Consensus 293 ~~~-------s~~~hdSl~YG~DWd~~~~----------~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 293 VLP-------SDKIHDSLCYGGDWDSKDS----------FLATCSFYDKKIRQLWLH 332 (339)
T ss_pred eee-------ccccccceeeccccccccc----------eeeeeeccccceeeeeee
Confidence 111 1256777677777743322 688886 566655 5654
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=3.2e-10 Score=92.79 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE--eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG--GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
|...+|.++................|.+++|+| ++.|+.. ..++.|.+||++. +++..+.. ..+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~~~---------~~~ 103 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSFGT---------QPR 103 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEeecC---------CCc
Confidence 345555553322233333322222699999999 6765443 4578999999964 66666641 558
Q ss_pred EEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 212 HSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
+.+.|+|+|+.++++|. ..|.|.+||.++... +... +...+..++|+|++. ++++
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~------------~~~~~t~~~WsPdGr----------~~~t 160 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTF------------EHSDATDVEWSPDGR----------YLAT 160 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-eecc------------ccCcEEEEEEcCCCC----------EEEE
Confidence 89999999987766553 357899999986433 3322 234578999999998 5666
Q ss_pred Eec------CCeEEEEecCC
Q 019258 290 CSE------DGILAVVEQGE 303 (343)
Q Consensus 290 ~s~------dg~i~~~~~~~ 303 (343)
++. |+.+++|+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccceeccccEEEEEecC
Confidence 653 77788898753
No 230
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=9.9e-12 Score=114.05 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=174.7
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC--CCeeEEEcc---CCCeEEEEcCCCcE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP--TRISSLSTS---HQSLVAASTLSGSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~--~~v~~v~~~---~~~~l~~~s~dg~v 94 (343)
.++.+..+| .++-+|++|.-+ +-+-++... ..+..-+.|- -.|-.+.|+ ..++-++..+...-
T Consensus 26 ~~~a~si~p----~grdi~lAsr~g------l~i~dld~p--~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka 93 (1081)
T KOG0309|consen 26 GFNAVSINP----SGRDIVLASRQG------LYIIDLDDP--FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA 93 (1081)
T ss_pred cccceeecc----ccchhhhhhhcC------eEEEeccCC--CCCceeeeccCcchhcceecccCCCCceeEEecCcchh
Confidence 455566666 677777776542 445566332 2222223332 347778887 33455555566666
Q ss_pred EEEEccC--ceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 95 HVLSSAM--QVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 95 ~v~~~~~--~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.+|++.. .+.+.+.. .+|...|+.+.|+ ...+++++.|..+..||+++...+.-.+..-.. ....++|+. .
T Consensus 94 iiwnlA~ss~~aIef~l--hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~ 170 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVL--HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKD 170 (1081)
T ss_pred hhhhhhcCCccceEEEE--ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccC
Confidence 7898873 33344333 3699999999999 678999999999999999986545444433333 588999999 6
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee-
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL- 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~- 247 (343)
..+++.+..+.|.+||+|. .+.++..++++. ..|+.++|+......+.+.+.||+|++||..+.......
T Consensus 171 p~vlasshg~~i~vwd~r~--gs~pl~s~K~~v-------s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRK--GSTPLCSLKGHV-------SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred cchhhhccCCceEEEeccC--CCcceEEecccc-------eeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 6778788899999999999 567888888765 779999998877667789999999999998653210000
Q ss_pred ----------------------ecCCC-------------------Cccc--ccCCccccEEEEEEeecCCCCcCCCCCc
Q 019258 248 ----------------------SGVGT-------------------GEAV--THSLSESEVWEVQYDCHTKSSNISSSRV 284 (343)
Q Consensus 248 ----------------------~~~~~-------------------~~~~--~~~~h~~~v~~v~~~p~~~~~~~~~~~~ 284 (343)
...+. .... ...+|...|....|-.....-+.-.+|=
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 00000 0000 1146777777777754433223334444
Q ss_pred cceEEEecCCeEEEEecCCCcc
Q 019258 285 LPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 285 ~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
.+|++-|.|..+++|--+....
T Consensus 322 fQLVTWSkD~~lrlWpI~~~i~ 343 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQIQ 343 (1081)
T ss_pred eeEEEeecCCceEeeeccHHHH
Confidence 5899999999999998655443
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=110.46 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=132.8
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCee---EE--Ecc-CCCeEEEEcCCCcEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRIS---SL--STS-HQSLVAASTLSGSLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~---~v--~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~ 106 (343)
.+..++.+..++ ++.+|+..... .+...++..... ++ -++ ++-++++|+.-+.|.+|+....+...
T Consensus 98 e~k~i~l~~~~n-----s~~i~d~~~~~---~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 98 ENKKIALVTSRN-----SLLIRDSKNSS---VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred hcceEEEEEcCc-----eEEEEecccCc---eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 445566665553 47788774421 122334433322 11 122 55678999999999999987222111
Q ss_pred eeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEE
Q 019258 107 VDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd 184 (343)
...+|.+.|.++.++ +.+++++|+|.++++|++++.+......-+|.. .+..+.+++. .++|++.|-+.++|+
T Consensus 170 ---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n-~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 170 ---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN-RIITVGEDCTCRVWG 244 (967)
T ss_pred ---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc-eeEEeccceEEEEEe
Confidence 335799999999997 999999999999999999997544434345555 7999999987 999999999999996
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
... ..+..+..|.+ ..+..++.++.. .+.++++.||.+++||+..
T Consensus 245 ~~~----~~l~~y~~h~g------~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNG----TQLEVYDEHSG------KGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc----ceehhhhhhhh------cceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence 643 55556666654 569999998864 5778999999999999854
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=5.7e-10 Score=106.31 Aligned_cols=182 Identities=9% Similarity=0.047 Sum_probs=138.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE---eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK---WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
...++.+..+..+.+||..... +.......+.+...+.. +++ .-++++|+.-+.|.+|+... .++...+.+|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~---dn~p~~l~GH 174 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE---DNKPIRLKGH 174 (967)
T ss_pred cceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---cCCcceeccc
Confidence 7788888889999999998874 33333333332333322 233 45688888899999999986 3444467777
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
+ +.|.++.++-+|+. +++.++|.++++|++.+.+...... -+|.+.||++.|+|.
T Consensus 175 e-------G~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~~~~----------fgHsaRvw~~~~~~n------- 229 (967)
T KOG0974|consen 175 E-------GSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLGCTG----------FGHSARVWACCFLPN------- 229 (967)
T ss_pred C-------CceEEEEEccCCcE-EEEEecCcceeeeecccccccCccc----------ccccceeEEEEeccc-------
Confidence 6 88999999999875 5799999999999998876655222 469999999999986
Q ss_pred CCCccceEEEecCCeEEEEecCCCccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++++++|-++++|.......+.+.+ ..-|.+++++++ --.++++++|+++.+|.
T Consensus 230 -----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhh
Confidence 48999999999999776555555555 367999999984 48899999999998764
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.2e-09 Score=95.36 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=142.0
Q ss_pred CCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEe
Q 019258 48 SPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL 123 (343)
Q Consensus 48 ~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~ 123 (343)
...|+++|...... .....+...+.+..|+ +++.|+..+. +..+.+|++..++...+... .+.+..+.|
T Consensus 178 ~~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~----~~~~~~~~~ 250 (429)
T PRK03629 178 PYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRHNGAPAF 250 (429)
T ss_pred ceeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC----CCCcCCeEE
Confidence 34688998855322 1123455678999999 7777775542 45788888875543332221 223445778
Q ss_pred c--CCEEEEE-eCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeE
Q 019258 124 T--GSECVSV-GEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 124 ~--~~~~~s~-s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~ 196 (343)
+ ++.++.. +.+| .|.+||+.++. ..++..... .+....|+| ++.++.++. ++...+|.+.. .+.....
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~--~~g~~~~ 325 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI--NGGAPQR 325 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCC--CcCceEECCCCCEEEEEeCCCCCceEEEEEC--CCCCeEE
Confidence 8 7777644 4455 48889998874 555544333 477889999 666766665 45556664432 1233344
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... .......|+|++..+++++..++ .|.+||+.++. ...+. ..+ ......|+|++
T Consensus 326 lt~~~-------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt----------~~~--~~~~p~~SpDG 385 (429)
T PRK03629 326 ITWEG-------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLT----------DTF--LDETPSIAPNG 385 (429)
T ss_pred eecCC-------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeC----------CCC--CCCCceECCCC
Confidence 43221 33567889999988766665544 48888987653 22222 111 23367899998
Q ss_pred CCCcCCCCCccceEEEecCCe---EEEEecCCCc-ccccccccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGI---LAVVEQGEEP-FELLAEPCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~---i~~~~~~~~~-~~~~~~~~~i~s~~~~~ 322 (343)
. .++.++.++. |++++..... ..+...+..+...+|+|
T Consensus 386 ~----------~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 386 T----------MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C----------EEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 8 6777777764 6777765433 33333355677777776
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=7.9e-10 Score=90.46 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
+...+|-++. ...++..+..... ++|.+++|+|++..++++ |..++.|.+||++ ..+....
T Consensus 37 ~~~~l~~~~~--~~~~~~~i~l~~~------~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~-------- 98 (194)
T PF08662_consen 37 GEFELFYLNE--KNIPVESIELKKE------GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF-------- 98 (194)
T ss_pred eeEEEEEEec--CCCccceeeccCC------CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee--------
Confidence 4567777765 3345544443221 579999999999776443 5567899999997 2222222
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEec---CCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccC
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE---DGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~---dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
+...++.|.|+|++. +++.++. .|.|.+||......-...+...+..++|+| +|++++++..
T Consensus 99 ----~~~~~n~i~wsP~G~----------~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP-dGr~~~ta~t 163 (194)
T PF08662_consen 99 ----GTQPRNTISWSPDGR----------FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP-DGRYLATATT 163 (194)
T ss_pred ----cCCCceEEEECCCCC----------EEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC-CCCEEEEEEe
Confidence 356788999999998 6776654 467999998743322222345578999999 6799988875
Q ss_pred C------ceEEEEe
Q 019258 334 W------ESIAIVS 341 (343)
Q Consensus 334 ~------~~i~~~~ 341 (343)
. ..+.||+
T Consensus 164 ~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 164 SPRLRVDNGFKIWS 177 (194)
T ss_pred ccceeccccEEEEE
Confidence 3 4555554
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.23 E-value=9.9e-11 Score=104.01 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc--------------eeeeeeccC---------C--ccccCeEEEEec
Q 019258 72 TRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ--------------VLLSVDENS---------G--FHVGPISGVDLT 124 (343)
Q Consensus 72 ~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~--------------~~~~~~~~~---------~--~h~~~v~~~~~~ 124 (343)
..|++++|. ++.+++++-.+|.+++|+.... ..+.+.... + .-.+.|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 579999998 7788889999999999976410 011111110 0 113467888887
Q ss_pred --CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 125 --GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 125 --~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
|+++++.|.||.++++|..+.. ++.+...--. ...|++|+| +.++++|+.|.-|.+|.+.. .+.+..-.+|.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---rRVVARGqGHk 374 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---RRVVARGQGHK 374 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHH-HHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEecc---ceEEEeccccc
Confidence 9999999999999999998863 4433322222 699999999 99999999999999999987 66666666654
Q ss_pred CCCCCcccCeEEEEEcCC-----------------------------------------------CCeEEEEEecCCcEE
Q 019258 202 GSQGKASGMIHSVDIHPS-----------------------------------------------RKHTCLAGGSSGTVF 234 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~-----------------------------------------------~~~~~~sg~~dg~v~ 234 (343)
.+|..|+|+|- -.+.|.+.+.|-.+.
T Consensus 375 -------SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlc 447 (636)
T KOG2394|consen 375 -------SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLC 447 (636)
T ss_pred -------cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEE
Confidence 88999999830 124567788999999
Q ss_pred EEEccC
Q 019258 235 AWDLRW 240 (343)
Q Consensus 235 iwd~~~ 240 (343)
+||+..
T Consensus 448 LWDlte 453 (636)
T KOG2394|consen 448 LWDLTE 453 (636)
T ss_pred EEecch
Confidence 999854
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=8.3e-09 Score=95.59 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=136.4
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++||..... +.....+...+.+..|+ +++.|+..+. ...|.+|++..++...+.. +.+...+..|+
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRGINGAPSFSP 257 (433)
T ss_pred EEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCCCccCceECC
Confidence 58889885422 12223456678999999 8888877764 3468899987554333221 22334567887
Q ss_pred -CCEEE-EEeCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCc--EEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYG--LQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~--i~iwd~~~~~~~~~~~~ 196 (343)
++.++ +.+.+| .|.+||+.++. ...+.. +.. .....+|+| +..++.++. ++. |.++|+.. + ....
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~-~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~---g-~~~~ 330 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTN-HFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG---G-SAER 330 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC-eEECcc-CCC-CccceEECCCCCEEEEEECCCCCceEEEEECCC---C-CeEE
Confidence 66664 556666 58999998874 444433 222 346789999 666766654 555 55556544 2 2333
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... ......+|+|++..++++...++ .|.+||+..+. +..+. +........|+|++
T Consensus 331 lt~~g-------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~~Lt------------~~~~~~~p~~spdG 390 (433)
T PRK04922 331 LTFQG-------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VRTLT------------PGSLDESPSFAPNG 390 (433)
T ss_pred eecCC-------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-eEECC------------CCCCCCCceECCCC
Confidence 33221 33457899999988766544443 59999987643 22222 12234467899998
Q ss_pred CCCcCCCCCccceEEEecC---CeEEEEecCCCccccccc-ccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSED---GILAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
. .++..+.+ +.|++++........+.. ...+...+|+|
T Consensus 391 ~----------~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 391 S----------MVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C----------EEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 8 45555543 357778775443333332 34455566665
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=5.2e-09 Score=96.70 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=117.5
Q ss_pred cccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEcc
Q 019258 114 HVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLR 186 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~ 186 (343)
+...+.+..|+ ++.++..+.+ ..|.+||+.++. ...+..... ......|+| ++.++ +.+.++...+|.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRVVANFKG--SNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEEeecCCC--CccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 56678899998 7788776643 359999998874 344432332 366889999 65665 56778887777664
Q ss_pred ccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccE
Q 019258 187 RAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v 265 (343)
. .+..+..+..+. +......|+|+|+.+++++..+|...+|.+... .....+. .+....
T Consensus 271 ~--~~~~~~~lt~~~-------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-----------~~g~~~ 330 (427)
T PRK02889 271 A--DGSGLRRLTQSS-------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-----------FTGSYN 330 (427)
T ss_pred C--CCCCcEECCCCC-------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-----------cCCCCc
Confidence 4 233444444322 335567899999888766555677777765422 1221221 112223
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCC---eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCc
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
....|+|++. .++..+.++ .|++|+........+.......+..|+| +|+.|+.+++.+
T Consensus 331 ~~~~~SpDG~----------~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~sp-dg~~l~~~~~~~ 392 (427)
T PRK02889 331 TSPRISPDGK----------LLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAP-NGRYILYATQQG 392 (427)
T ss_pred CceEECCCCC----------EEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECC-CCCEEEEEEecC
Confidence 4678999988 566665554 5889986543333333333456788999 568877777554
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.8e-08 Score=93.49 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=138.9
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++++..... ......+...+.+..|+ +++.|+..+. +..|.+|++..++...+. .+.+.+....|+
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~----~~~g~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG----NFPGMTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee----cCCCcccCcEECC
Confidence 57788874422 12223566789999999 7787777653 468999999755433322 244566778888
Q ss_pred -CCEEE-EEeCCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC--cEEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~ 196 (343)
|+.++ +.+.++. |.+||+.++. ..++.. +.. ......|+| +..++..+. ++ .|.++|+.. .....
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~-~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g----~~~~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTD-SPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG----SNPRR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc-eEEccC-CCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCC----CCeEE
Confidence 76664 6666665 6677888773 555433 222 356789999 666776664 33 577778654 33444
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... +.+....|+|++..++++....+ .|.+||+.... ...+. ....+..+.|+|++
T Consensus 329 lt~~~-------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt------------~~~~~~~p~~spDG 388 (435)
T PRK05137 329 ISFGG-------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT------------SGFLVEGPTWAPNG 388 (435)
T ss_pred eecCC-------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc------------CCCCCCCCeECCCC
Confidence 44222 44667889999988766554333 57888875432 22221 12235678999998
Q ss_pred CCCcCCCCCccceEEEec-C-----CeEEEEecCCCcccccccccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSE-D-----GILAVVEQGEEPFELLAEPCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~-d-----g~i~~~~~~~~~~~~~~~~~~i~s~~~~~ 322 (343)
. .++..+. . ..|++++........+..+..+..-+|+|
T Consensus 389 ~----------~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 389 R----------VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSP 432 (435)
T ss_pred C----------EEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCC
Confidence 8 4444333 2 25777776543333343444455666665
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.5e-08 Score=94.08 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=129.1
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC---CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE---DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .|...+.+..|+ ++.++..+. +..|.+||+.++. ...+..... .+...+|+|
T Consensus 183 ~l~~~d~dg~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~~l~~~~g--~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-RELVGNFPG--MTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EEEeecCCC--cccCcEECC
Confidence 6667776532222222 366789999998 778877653 4689999998874 444432222 467889999
Q ss_pred -CCEEE-EEeCCCc--EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCC
Q 019258 168 -PTEFV-TGGFGYG--LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~ 241 (343)
+..++ +.+.++. |.+||+.. ..+..+..+. +......|+|++..++++...+| .|+++|+...
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~----~~~~~Lt~~~-------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRS----GTTTRLTDSP-------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCC----CceEEccCCC-------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 65554 5555655 66668766 3344444332 44667899999987766554444 5778887653
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-C--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED-G--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d-g--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
....+. .+...+....|+|++. .++..+.+ + .|++|+.......++.....+.+.
T Consensus 325 -~~~~lt-----------~~~~~~~~~~~SpdG~----------~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p 382 (435)
T PRK05137 325 -NPRRIS-----------FGGGRYSTPVWSPRGD----------LIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGP 382 (435)
T ss_pred -CeEEee-----------cCCCcccCeEECCCCC----------EEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCC
Confidence 222322 1234566788999988 56555443 2 578888644333444444457788
Q ss_pred eecCCCCCeeEEccCC------ceEEEEe
Q 019258 319 DIDPQNPSDVICSLEW------ESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~------~~i~~~~ 341 (343)
.|+| +|+.|+..++. ..+++++
T Consensus 383 ~~sp-DG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 383 TWAP-NGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred eECC-CCCEEEEEEccCCCCCcceEEEEE
Confidence 9999 56887775543 2466654
No 240
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-09 Score=91.17 Aligned_cols=231 Identities=10% Similarity=0.012 Sum_probs=145.1
Q ss_pred CCCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---------------CCCCCCCccCCCC
Q 019258 7 RTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---------------PASLTPHSQWTPP 71 (343)
Q Consensus 7 ~~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---------------~~~~~~~~~~~~~ 71 (343)
.+.-.+......++|++|.+-. .+.+++||-..+ ++.++.-+. +.+...+.++..+
T Consensus 15 gdk~d~~~~tead~ItaVefd~----tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleie 85 (460)
T COG5170 15 GDKLDLNSSTEADKITAVEFDE----TGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIE 85 (460)
T ss_pred cchhhcccccccceeeEEEecc----ccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHH
Confidence 3344455555668899999998 788999884333 233443311 1122234445556
Q ss_pred CCeeEEEcc---CCCeEEEEcCCCcEEEEEccCc------------------e-e------eee--------------ec
Q 019258 72 TRISSLSTS---HQSLVAASTLSGSLHVLSSAMQ------------------V-L------LSV--------------DE 109 (343)
Q Consensus 72 ~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~------------------~-~------~~~--------------~~ 109 (343)
..|+.+.|. .-..++..+.|.+|++|.+... . + +.. .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 679999998 3356888889999999988521 0 0 000 00
Q ss_pred -cCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE--cCCCc----cceEEEEeCC--CCEEEEEeCCCc
Q 019258 110 -NSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY--DGNGL----VGFNCVKWAS--PTEFVTGGFGYG 179 (343)
Q Consensus 110 -~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~--~~~~~----~~v~~~~~~~--~~~l~t~~~d~~ 179 (343)
...+|..-+++++++ ....+..+.|=.|.+|+++-......+. .++.. .-|++..|+| .+.+...+..|.
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 124566778899998 6777777888899999986532222222 23321 1378899999 888999999999
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCC------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGK------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
|++-|+|+.........+....-++.. --..|..+.|+|+|++++ + -+=-+|++||.+....|+...
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-s-RdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-S-RDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-E-eccceEEEEecccccCCceee
Confidence 999999971111111111110000000 004588899999998764 3 333589999999877777655
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=2.9e-10 Score=113.56 Aligned_cols=205 Identities=13% Similarity=0.158 Sum_probs=144.2
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
...+.++|+.||.|++|....++.+...+.. ....|+.+.|+ |+.+..+..||.+.+|.+.. ++......|..
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~qchnk- 2293 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSWQCHNK- 2293 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeecccCC--cceeccccCCc-
Confidence 5567899999999999999877777665543 33789999998 99999999999999999973 35556666766
Q ss_pred ceEEEEeCCCCEEEEEeC---CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 159 GFNCVKWASPTEFVTGGF---GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
...++.|.. ..+++++. ++.+.+||.-. ++....--+.|. +.++++++-|.. .++++|+.+|.|++
T Consensus 2294 ~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~--~~~~s~v~~~H~-------~gaT~l~~~P~~-qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2294 ALSDFRFIG-SLLATAGRSSDNRNVCLWDTLL--PPMNSLVHTCHD-------GGATVLAYAPKH-QLLISGGRKGEVCL 2362 (2439)
T ss_pred cccceeeee-hhhhccccCCCCCcccchhccc--CcccceeeeecC-------CCceEEEEcCcc-eEEEecCCcCcEEE
Confidence 677888776 55666654 88999999865 221111113333 669999999985 57789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccc-
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEP- 312 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~- 312 (343)
||+|+.+....+. . ++ . .. ++++++..|.|++|+...-. ..+-.++
T Consensus 2363 ~D~rqrql~h~~~----------------~----~~-~-~~---------~f~~~ss~g~ikIw~~s~~~ll~~~p~e~a 2411 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQ----------------A----LD-T-RE---------YFVTGSSEGNIKIWRLSEFGLLHTFPSEHA 2411 (2439)
T ss_pred eehHHHHHHHHhh----------------h----hh-h-hh---------eeeccCcccceEEEEccccchhhcCchhhc
Confidence 9999843322222 2 34 2 33 79999999999999975431 1111111
Q ss_pred -c-----ccceeeecCCCCCeeEEccC
Q 019258 313 -C-----AINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 313 -~-----~i~s~~~~~~~~~~l~~~~~ 333 (343)
. .=+.+.+.. .+....||.|
T Consensus 2412 k~gfFr~~g~Q~~v~~-~nrifsCgad 2437 (2439)
T KOG1064|consen 2412 KQGFFRNIGMQINVGQ-CNRIFSCGAD 2437 (2439)
T ss_pred ccchhhhcCceeeecc-CceEEEecCC
Confidence 0 015556665 4477777764
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=2e-08 Score=92.75 Aligned_cols=231 Identities=16% Similarity=0.142 Sum_probs=135.4
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|+++|...... .....+...+.+.+|+ +++.|+..+.+ ..|.+|++..++...+.. ..+...+..|+
T Consensus 177 ~L~~~D~dG~~~---~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~~g~~~~~~~SP 249 (427)
T PRK02889 177 QLQISDADGQNA---QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----FKGSNSAPAWSP 249 (427)
T ss_pred EEEEECCCCCCc---eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence 577777743221 2223566788899999 78888776642 358999997554433322 22345677888
Q ss_pred -CCEEE-EEeCCCcEEEEEC--CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEe
Q 019258 125 -GSECV-SVGEDGRVNLVSV--IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 125 -~~~~~-s~s~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
++.++ +.+.+|...+|.+ .++ ...++.. +.. ......|+| +..++..+. ++...+|.+.. .+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~--~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQ-SSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA--SGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC-CcEECCC-CCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEEC--CCCceEEEe
Confidence 66665 5678888777755 444 2444332 222 356678999 666665554 56777887654 223333333
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
... ......+|+|+|..++.+...++ .|.+||+..++. ..+. . ........|+|++.
T Consensus 325 ~~g-------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-~~lt----------~--~~~~~~p~~spdg~- 383 (427)
T PRK02889 325 FTG-------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-TALT----------D--TTRDESPSFAPNGR- 383 (427)
T ss_pred cCC-------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-EEcc----------C--CCCccCceECCCCC-
Confidence 211 22446789999988765544443 699999976542 2222 1 12235789999988
Q ss_pred CcCCCCCccceEEEecCC---eEEEEecCCCccccccc-ccccceeeecC
Q 019258 277 SNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
.|+.++.++ .+++.+........+.. ...+...+|+|
T Consensus 384 ---------~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 384 ---------YILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ---------EEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 455555444 25555554333333332 34566667766
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.6e-08 Score=93.73 Aligned_cols=208 Identities=15% Similarity=0.106 Sum_probs=125.5
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.+||........+. .|...+.+..|+ ++.++.++.+ ..|.+||+.++. ...+..... ...+.+|+|
T Consensus 185 ~l~i~D~~g~~~~~lt----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~~~~g--~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYNPQTIL----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVASFRG--INGAPSFSP 257 (433)
T ss_pred EEEEECCCCCCceEee----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEeccCCC--CccCceECC
Confidence 5778877533222222 355678889998 7788877643 469999998874 333322222 355789999
Q ss_pred -CCEEE-EEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCC
Q 019258 168 -PTEFV-TGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~ 241 (343)
+..++ +.+.++ .|.+||+.. ++ +..+..+. ......+|+|++..++++...+|. |+++|+..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~---g~-~~~lt~~~-------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGS---RQ-LTRLTNHF-------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCC---CC-eEECccCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 55554 555555 589999876 33 34444322 335678999999877666555565 666666553
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
.. ..+. .+.......+|+|++. .++..+. ++ .|++|+........+.......+.
T Consensus 327 ~~-~~lt-----------~~g~~~~~~~~SpDG~----------~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p 384 (433)
T PRK04922 327 SA-ERLT-----------FQGNYNARASVSPDGK----------KIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP 384 (433)
T ss_pred Ce-EEee-----------cCCCCccCEEECCCCC----------EEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc
Confidence 32 2221 1223344689999988 4555443 33 588898754433344443345567
Q ss_pred eecCCCCCeeEEccCC---ceEEEEe
Q 019258 319 DIDPQNPSDVICSLEW---ESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~---~~i~~~~ 341 (343)
.|+| +|+.++..+++ ..+++++
T Consensus 385 ~~sp-dG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 385 SFAP-NGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEE
Confidence 8998 56777766653 3455553
No 244
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.6e-08 Score=91.13 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=126.1
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .+...+.+..|+ |+.++..+ .+..+.+||+.+++ ...+..... ......|+|
T Consensus 180 ~l~~~d~dg~~~~~lt----~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~--~~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR--HNGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCEEee----cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC--CcCCeEECC
Confidence 5777777633322222 245678899998 77777654 34578999998874 444332222 355689999
Q ss_pred -CCEEEEE-eCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE--EccCC
Q 019258 168 -PTEFVTG-GFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW--DLRWQ 241 (343)
Q Consensus 168 -~~~l~t~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw--d~~~~ 241 (343)
+..++.. +.++ .|.+||+.. + .+..+.... ..+....|+|++..++++...+|...+| |+..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~t---g-~~~~lt~~~-------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLAS---G-QIRQVTDGR-------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCC---C-CEEEccCCC-------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 6666544 4444 588899876 3 334443222 4467889999998776665555555555 55543
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
. ...+. .+........|+|++. .++..+. ++ .|++|+........+.......+.
T Consensus 322 ~-~~~lt-----------~~~~~~~~~~~SpDG~----------~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p 379 (429)
T PRK03629 322 A-PQRIT-----------WEGSQNQDADVSSDGK----------FMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETP 379 (429)
T ss_pred C-eEEee-----------cCCCCccCEEECCCCC----------EEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCc
Confidence 2 22222 1223455788999988 4555443 33 478888654433444443344577
Q ss_pred eecCCCCCeeEEccCCce---EEEEe
Q 019258 319 DIDPQNPSDVICSLEWES---IAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~---i~~~~ 341 (343)
.|+| +|+.|+.++.++. +++++
T Consensus 380 ~~Sp-DG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 380 SIAP-NGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred eECC-CCCEEEEEEcCCCceEEEEEE
Confidence 8998 6788888886653 45543
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.3e-08 Score=89.26 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=134.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc---------------------CCCeEEEEcC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS---------------------HQSLVAASTL 90 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~---------------------~~~~l~~~s~ 90 (343)
-..+||....|+ +|++|+...+....-+... ...+...+..|. +...++.|..
T Consensus 4 ~~~~~A~~~~~g-----~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 4 ALDYFALSTGDG-----RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred hhheEeecCCCC-----eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 457888877775 4889999543211111111 111222222221 4557899999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
.|.|-+|++..++--..... ..|.++|+++.+. -..|.|++.|+.+..|+.... ...+.+..... .+..+++.|
T Consensus 79 ~g~v~~ys~~~g~it~~~st-~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~-~~~sl~is~D 155 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLST-DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKP-LVSSLCISPD 155 (541)
T ss_pred CccEEEEEecCCeEEEEEec-CCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCC-ccceEEEcCC
Confidence 99999999986553333332 3699999999988 778999999999999999887 46666555444 688999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC-----CCeEEEEEecCCcEEEEEccC
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS-----RKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-----~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+..+++++ ++|++||+.. .+.+.+|.+|. ++|.++.|--. |.+++.+...+.-+.+|=.+.
T Consensus 156 ~~~l~~as--~~ik~~~~~~---kevv~~ftgh~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIET---KEVVITFTGHG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccC---ceEEEEecCCC-------cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 66777665 7999999999 78888899887 89999999766 566776666677788887654
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.2e-07 Score=85.75 Aligned_cols=167 Identities=19% Similarity=0.096 Sum_probs=119.3
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----------------------CCEEEEEeCCCcEEE
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----------------------GSECVSVGEDGRVNL 139 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----------------------~~~~~s~s~dg~v~~ 139 (343)
..+++....||.+++|+...++...-......-.+.+++..|. ...++-|-..|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 4678889999999999998543221111110123445555553 135777888999999
Q ss_pred EECCCCceEEEEE-cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 140 VSVIGGGEFKRVY-DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 140 wd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+++..++...++. ..|.. .|.++.++. ...|-+++.|..+..|+... ...+..+.... ..+.+++..
T Consensus 85 ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~-------~~~~sl~is 153 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKE---KVIIRIWKEQK-------PLVSSLCIS 153 (541)
T ss_pred EEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEeccc---ceeeeeeccCC-------CccceEEEc
Confidence 9998885444444 34555 899999888 77899999999999999977 44444444332 558899999
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
|++. ++++++ ++|++||+.+.+....+ .+|.++|.++.|--.
T Consensus 154 ~D~~-~l~~as--~~ik~~~~~~kevv~~f-----------tgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 154 PDGK-ILLTAS--RQIKVLDIETKEVVITF-----------TGHGSPVRTLSFTTL 195 (541)
T ss_pred CCCC-EEEecc--ceEEEEEccCceEEEEe-----------cCCCcceEEEEEEEe
Confidence 9975 556654 69999999986554444 689999999999866
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.07 E-value=1.2e-07 Score=79.97 Aligned_cols=280 Identities=15% Similarity=0.155 Sum_probs=165.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCe-EEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSL-VAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~-l~~~s~dg~ 93 (343)
--++|.-|.|.. +..+++.+-+-. ..+.+|++.-++. .+.+ .-...+.+++|+ +++. |.+...+-.
T Consensus 47 cldki~yieW~a----ds~~ilC~~yk~----~~vqvwsl~Qpew---~ckIdeg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 47 CLDKIVYIEWKA----DSCHILCVAYKD----PKVQVWSLVQPEW---YCKIDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHHHhhheeeec----cceeeeeeeecc----ceEEEEEeeccee---EEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence 347889999998 677777665532 2477999954332 2233 345678999999 7754 555556899
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC------------------------------------CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE------------------------------------DG 135 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~------------------------------------dg 135 (343)
|.+|.+.+.....+... +..+..++++ |+..+.+++ ++
T Consensus 116 iTVWSL~t~~~~~~~~p----K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHP----KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred EEEEEeccceeEEeccc----ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 99999986554433211 1233555555 444333332 23
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCC-CC---------------------
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGS-GG--------------------- 192 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~-~~--------------------- 192 (343)
.+.+||..-.- ..-.++ .+.++..++|+| ++.++.|++|+.+|+.+--+... ++
T Consensus 192 ~laVwd~~Ley-kv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 192 WLAVWDNVLEY-KVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred EEEEecchhhh-eeeeee--eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 34566643221 111222 223699999999 88888899999998854211000 00
Q ss_pred Ce-----------------------------------eEEecccC-CCCCcccCeEEEEEcCCCCeEEEEEecCC---cE
Q 019258 193 PV-----------------------------------LQFKGNFG-SQGKASGMIHSVDIHPSRKHTCLAGGSSG---TV 233 (343)
Q Consensus 193 ~~-----------------------------------~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~~~sg~~dg---~v 233 (343)
++ ..++...+ .... -.+.-++|+++.. .+++ -.|. .+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk--~g~g~lafs~Ds~-y~aT-rnd~~Pnal 344 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK--CGAGKLAFSCDST-YAAT-RNDKYPNAL 344 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc--cccceeeecCCce-EEee-ecCCCCceE
Confidence 00 00000000 0000 2366789999864 3344 3333 48
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccc-cc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLA-EP 312 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~-~~ 312 (343)
-+||+++.+....+. ...+|....|+|..+ .|+.|.....+++|-.........+ ..
T Consensus 345 W~Wdlq~l~l~avLi------------Qk~piraf~WdP~~p----------rL~vctg~srLY~W~psg~~~V~vP~~G 402 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRP----------RLVVCTGKSRLYFWAPSGPRVVGVPKKG 402 (447)
T ss_pred EEEechhhhhhhhhh------------hccceeEEEeCCCCc----------eEEEEcCCceEEEEcCCCceEEecCCCC
Confidence 899999865443333 356899999999988 6888888888999987653322222 34
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEE
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
..|.++.|+-.....++||-|.--+.++
T Consensus 403 F~i~~l~W~~~g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 403 FNIQKLQWLQPGEFIVLCGKDAFCVAIV 430 (447)
T ss_pred ceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence 6789999885444566777665554443
No 248
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=1.5e-09 Score=100.09 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=141.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-ceeeeeeccCCcccc--CeEEEEec-----CCEEEEEeCCCcEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVG--PISGVDLT-----GSECVSVGEDGRVN 138 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~--~v~~~~~~-----~~~~~s~s~dg~v~ 138 (343)
+...+.+.++..+ .++-++.++.-| +.+-|+.. ..+.... .|.. .|-.++|+ ...+++.+... -.
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l----~h~tpw~vad~qws~h~a~~~wiVsts~qk-ai 94 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL----HHITPWQVADVQWSPHPAKPYWIVSTSNQK-AI 94 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee----eccCcchhcceecccCCCCceeEEecCcch-hh
Confidence 3445666777666 556677777766 45556652 1222111 1322 46677887 33455555544 56
Q ss_pred EEECCC--CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 139 LVSVIG--GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 139 ~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+|.+.. ...+.-+..+|.. .++.+-|++ ...+++++-|-.+..||+|+ +..++..+..-. .....|
T Consensus 95 iwnlA~ss~~aIef~lhghsr-aitd~n~~~q~pdVlatcsvdt~vh~wd~rS--p~~p~ys~~~w~-------s~asqV 164 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSR-AITDINFNPQHPDVLATCSVDTYVHAWDMRS--PHRPFYSTSSWR-------SAASQV 164 (1081)
T ss_pred hhhhhcCCccceEEEEecCcc-ceeccccCCCCCcceeeccccccceeeeccC--CCcceeeeeccc-------ccCcee
Confidence 787743 3233334445555 899999999 77899999999999999999 666665554332 457789
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.|+-..++++| .+....|++||+|.+..|.... ++|...|+.+.|+.--.. .+++++.||
T Consensus 165 kwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~----------K~~vs~vn~~~fnr~~~s---------~~~s~~~d~ 224 (1081)
T KOG0309|consen 165 KWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSL----------KGHVSSVNSIDFNRFKYS---------EIMSSSNDG 224 (1081)
T ss_pred eecccCcchhh-hccCCceEEEeccCCCcceEEe----------cccceeeehHHHhhhhhh---------hhcccCCCC
Confidence 99988888765 4666789999999999999888 789999999999876555 799999999
Q ss_pred eEEEEecCC
Q 019258 295 ILAVVEQGE 303 (343)
Q Consensus 295 ~i~~~~~~~ 303 (343)
+++.|++..
T Consensus 225 tvkfw~y~k 233 (1081)
T KOG0309|consen 225 TVKFWDYSK 233 (1081)
T ss_pred ceeeecccc
Confidence 999999754
No 249
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=7.8e-09 Score=86.44 Aligned_cols=222 Identities=13% Similarity=0.129 Sum_probs=137.2
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--eeeeccCCcc------------ccCeEEEEec----CCEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--LSVDENSGFH------------VGPISGVDLT----GSEC 128 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h------------~~~v~~~~~~----~~~~ 128 (343)
......|+++.|. .+.+|++|...|.|.+|.-..... .........| ...|..+.|. ...|
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3455679999999 788999998899999997653221 1111111122 2368888887 4678
Q ss_pred EEEeCCCcEEEEECCCCc-----------------------------------------eEEEEEcCCCccceEEEEeCC
Q 019258 129 VSVGEDGRVNLVSVIGGG-----------------------------------------EFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 129 ~s~s~dg~v~~wd~~~~~-----------------------------------------~~~~~~~~~~~~~v~~~~~~~ 167 (343)
+..+.|.+|++|.+.... .+.+++...+...+.+++++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 889999999999874320 011222222223577888888
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce---e
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ---S 244 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~---~ 244 (343)
....+..++|-.|.+|.+..-...-.+..++.+.-+. -...|++..|||...+++.-.++.|.|++-|+|+... +
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 5555556679999999998711111223344332111 1145899999998877887788999999999996421 1
Q ss_pred eeee--cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 245 IVLS--GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 245 ~~~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
..+. ..+..+.-....-...|..+.|++.+. ++++ -+--++.+||..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr----------yIls-RdyltvkiwDvn 309 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR----------YILS-RDYLTVKIWDVN 309 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCc----------EEEE-eccceEEEEecc
Confidence 1111 000000000012245789999998876 4444 334588999875
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.00 E-value=2.3e-07 Score=85.68 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=121.7
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .+...+....|+ ++.++.+..+ ..|.+||+.+++ ...+.. ... ...+..|+|
T Consensus 171 ~l~~~d~~g~~~~~l~----~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~~~-~~~-~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGANPQTIT----RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKVAS-FPG-MNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCCCEEee----cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEeec-CCC-CccceEECC
Confidence 4666666422222222 244567888888 7778776543 479999998874 333322 222 466789999
Q ss_pred -CCEEE-EEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCC
Q 019258 168 -PTEFV-TGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~ 241 (343)
+..|+ +.+.++ .|.+||+.. .....+..+. .......|+|++..++++...++ .|+++|+...
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~----~~~~~l~~~~-------~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDG----KQLTRLTNGP-------GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCC----CCEEECCCCC-------CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 55555 444444 588888866 2333443222 33446789999987766655444 5777787654
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC---eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
. ...+. .+...+..+.|+|++. .++.++.++ .|++|+........+.+.....+.
T Consensus 313 ~-~~~l~-----------~~~~~~~~~~~spdg~----------~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p 370 (417)
T TIGR02800 313 E-VRRLT-----------FRGGYNASPSWSPDGD----------LIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP 370 (417)
T ss_pred C-EEEee-----------cCCCCccCeEECCCCC----------EEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc
Confidence 3 22222 2345567889999987 567666665 688888755444444443334556
Q ss_pred eecCCCCCeeEEccCCc
Q 019258 319 DIDPQNPSDVICSLEWE 335 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~ 335 (343)
.++| +|+.|+.++..+
T Consensus 371 ~~sp-dg~~l~~~~~~~ 386 (417)
T TIGR02800 371 SFAP-NGRMILYATTRG 386 (417)
T ss_pred eECC-CCCEEEEEEeCC
Confidence 7888 457777766543
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.6e-09 Score=95.67 Aligned_cols=218 Identities=12% Similarity=0.086 Sum_probs=138.7
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-Cceeee---eeccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLS---VDENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
...+|...|.++.-. +++.+++++.|.+|++|.+. ++.++. ..-....|+.+|+++.+....-..++.||.+.+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 334566677777665 78899999999999999997 222221 1123346999999999984444455678899999
Q ss_pred ECCCCceEEEEEcCCCcc---ceEEEEeCCCCEEEEE-eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 141 SVIGGGEFKRVYDGNGLV---GFNCVKWASPTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
|.--++...++....... .|.|+.--....++++ +...+|+++|.|. .+-...++...... ..+-+.+++.
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs---ce~~~E~kVcna~~--Pna~~R~iaV 884 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS---CEWTCELKVCNAPG--PNALTRAIAV 884 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc---ccceeeEEeccCCC--CchheeEEEe
Confidence 976553333233222111 3445442224445555 6799999999998 66555555432101 1156899999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
.|.|.+ +++|-++|.|.+.|.|++..... . ...+-...+++- |.++ .++....|.++
T Consensus 885 a~~GN~-lAa~LSnGci~~LDaR~G~vINs-w----------rpmecdllqlaa-psdq----------~L~~saldHsl 941 (1034)
T KOG4190|consen 885 ADKGNK-LAAALSNGCIAILDARNGKVINS-W----------RPMECDLLQLAA-PSDQ----------ALAQSALDHSL 941 (1034)
T ss_pred ccCcch-hhHHhcCCcEEEEecCCCceecc-C----------CcccchhhhhcC-chhH----------HHHhhccccee
Confidence 999865 57888999999999999643222 1 122333444443 3334 57777778888
Q ss_pred EE-EecCCCccccccc
Q 019258 297 AV-VEQGEEPFELLAE 311 (343)
Q Consensus 297 ~~-~~~~~~~~~~~~~ 311 (343)
.+ |..-.+.+-+...
T Consensus 942 aVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDK 957 (1034)
T ss_pred EeeehhcCCeeeeccC
Confidence 87 8765555444433
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=5.8e-06 Score=74.29 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=161.9
Q ss_pred EEEEeecC-CCCCCceeeeeCC-CCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC----CCcEEEEEccCc-eeeeee
Q 019258 37 AVLAIYDT-DADSPSLETHSIS-LPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL----SGSLHVLSSAMQ-VLLSVD 108 (343)
Q Consensus 37 l~t~s~D~-~~~~~~l~~w~~~-~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~----dg~v~v~~~~~~-~~~~~~ 108 (343)
+..|++.. ..+ .|..+++. +......+..........-++++ ++++|++... +|.|..|++... ..+...
T Consensus 2 ~~vgsy~~~~~~--gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGG--GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSST--EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCC--cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 45566664 112 35566662 22223223333344556677777 7777777766 579999998854 233222
Q ss_pred ccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEE---Ec---------CCCccceEEEEeCC-CCEEE
Q 019258 109 ENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRV---YD---------GNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~---~~---------~~~~~~v~~~~~~~-~~~l~ 172 (343)
.........-+.+.++ ++.++++. .+|.|.++++.....+... .. ........++.++| ++.++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2111111233457775 77766665 6999999999763222222 21 12223688999999 56666
Q ss_pred EEeC-CCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee-e
Q 019258 173 TGGF-GYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV-L 247 (343)
Q Consensus 173 t~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~-~ 247 (343)
+... ...|.+|++.. ....+.. +....+ ..-..+.|+|++..++++.-.+++|.++++........ .
T Consensus 160 v~dlG~D~v~~~~~~~--~~~~l~~~~~~~~~~G------~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDD--DTGKLTPVDSIKVPPG------SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EEETTTTEEEEEEE-T--TS-TEEEEEEEECSTT------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEEEeC--CCceEEEeeccccccC------CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 5544 77899999976 2222322 222221 44778999999998888888899999999982221111 1
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Cccccccc----ccccceeeec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAE----PCAINSFDID 321 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~----~~~i~s~~~~ 321 (343)
....... ...........|+++|++.. ..++....+.|.+++.+. ...+.... ...-..|.++
T Consensus 232 ~~~~~~~--~~~~~~~~~~~i~ispdg~~---------lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 232 QTISTLP--EGFTGENAPAEIAISPDGRF---------LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp EEEESCE--TTSCSSSSEEEEEE-TTSSE---------EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred EEeeecc--ccccccCCceeEEEecCCCE---------EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 1000000 00111235789999999885 455556777888887632 22222222 2336889999
Q ss_pred CCCCCeeEEcc-CCceEEEEeC
Q 019258 322 PQNPSDVICSL-EWESIAIVSR 342 (343)
Q Consensus 322 ~~~~~~l~~~~-~~~~i~~~~~ 342 (343)
| +|++|+.+. +.+.|.+|++
T Consensus 301 ~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 301 P-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp T-TSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEEecCCCeEEEEEE
Confidence 8 568887776 5568888864
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.97 E-value=9e-07 Score=81.78 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=122.8
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT 124 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 124 (343)
..|++++...... .....+...+.+..|+ +++.|+.++.+ ..|++|++..++...+. .+.+.+.++.|+
T Consensus 170 ~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEEC
Confidence 3577887743221 2223455578888999 88888776643 47899998755433222 233455667887
Q ss_pred --CCEEE-EEeCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC--cEEEEEccccCCCCCee
Q 019258 125 --GSECV-SVGEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 125 --~~~~~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~ 195 (343)
++.|+ +.+.++ .|.+||+.++. ...+.... . ......|++ +..++..+. ++ .|.++|+.. + ...
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~-~-~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---~-~~~ 315 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGP-G-IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG---G-EVR 315 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCC-C-CCCCEEECCCCCEEEEEECCCCCceEEEEECCC---C-CEE
Confidence 66665 445444 58888988763 44443322 2 244668888 666665554 33 566777755 3 233
Q ss_pred EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
.+.... .......|+|++..++++....+ .|.+||+.... ...+. . ........|+|+
T Consensus 316 ~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~~~l~----------~--~~~~~~p~~spd 375 (417)
T TIGR02800 316 RLTFRG-------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-ERVLT----------D--TGLDESPSFAPN 375 (417)
T ss_pred EeecCC-------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-eEEcc----------C--CCCCCCceECCC
Confidence 343222 44678899999987665543332 68888987632 22222 1 112345679999
Q ss_pred CCCCcCCCCCccceEEEecCC---eEEEEecC
Q 019258 274 TKSSNISSSRVLPAMFCSEDG---ILAVVEQG 302 (343)
Q Consensus 274 ~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~ 302 (343)
+. .|+..+.++ .+++.+..
T Consensus 376 g~----------~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 376 GR----------MILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CC----------EEEEEEeCCCcEEEEEEECC
Confidence 87 455555443 35555543
No 254
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.89 E-value=2.1e-08 Score=84.52 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=126.4
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCe
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPV 194 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~ 194 (343)
+-.+++.+|+++++++.- .+.+-|.++- ++.+++..-+ .|.-+.|.. ...+.....|+.|.+|++.+ .+-.
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tl-q~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Q---pew~ 84 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETL-QLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQ---PEWY 84 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchh-hHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeec---ceeE
Confidence 445555559999999887 6777777665 2444433333 366677766 33444555588999999977 3333
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
..+... + +.+.+++|+|+|++++.+..-|-+|.+|.+.+... ..+. --...+..++|+|++
T Consensus 85 ckIdeg---~----agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~-----------~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 85 CKIDEG---Q----AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLP-----------HPKTNVKGYAFHPDG 145 (447)
T ss_pred EEeccC---C----CcceeeeECCCcceEeeeecceeEEEEEEecccee-EEec-----------ccccCceeEEECCCC
Confidence 333311 1 67999999999999999999999999999987432 2222 113346788999988
Q ss_pred CCCcCCCCC----ccceEE---------------------EecCC-eEEEEecCCCccccccc-ccccceeeecCCCCCe
Q 019258 275 KSSNISSSR----VLPAMF---------------------CSEDG-ILAVVEQGEEPFELLAE-PCAINSFDIDPQNPSD 327 (343)
Q Consensus 275 ~~~~~~~~~----~~~l~s---------------------~s~dg-~i~~~~~~~~~~~~~~~-~~~i~s~~~~~~~~~~ 327 (343)
......++| ...+.+ -|-|| -|.+||...+-..+..+ ..-+..++++| .+++
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qf 224 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQF 224 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccce
Confidence 731000000 000000 12233 35567665444333333 46789999999 5699
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
|+.|+-|+.++++|-
T Consensus 225 lavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNH 239 (447)
T ss_pred EEeeccchhhhhhce
Confidence 999999999988764
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.7e-06 Score=78.02 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=159.8
Q ss_pred ceeeEEecCCCCCCCCeEEEE-----eecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLA-----IYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~-----s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
++.++.++| .+.+|.|= ..|+..+..-+.+|++.+ .......+...... ++..|+.++.|++--..+.+
T Consensus 75 ~~~~L~fSP----~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev 148 (566)
T KOG2315|consen 75 KTYDLLFSP----KGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEV 148 (566)
T ss_pred eeeeeeecc----cccccccccccccccCCCCCCCceeeeeecc-ceehhheehhhhcC-cccccccchhhhhhhhcceE
Confidence 889999999 45444431 123333334477888865 22111111122222 68888866677777778899
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-C--CEEE------EEeCCCcEEEEECCCCc--eE--EEEEcCCCccceE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-G--SECV------SVGEDGRVNLVSVIGGG--EF--KRVYDGNGLVGFN 161 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~~------s~s~dg~v~~wd~~~~~--~~--~~~~~~~~~~~v~ 161 (343)
++|+..+...... ..|...|+.+.++ + ...+ ..|.-..|++|...-.. .+ .+.+...+ =-
T Consensus 149 ~f~~~~~f~~~~~----kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad---kv 221 (566)
T KOG2315|consen 149 QFYDLGSFKTIQH----KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD---KV 221 (566)
T ss_pred EEEecCCccceee----eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc---ee
Confidence 9999985332211 2467788888888 4 2222 23556789999876211 11 11111111 23
Q ss_pred EEEeCC--CCEEEEEeC--CC---------cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE-EEE
Q 019258 162 CVKWAS--PTEFVTGGF--GY---------GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC-LAG 227 (343)
Q Consensus 162 ~~~~~~--~~~l~t~~~--d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~-~sg 227 (343)
.+.|+. ..+|+.++. |+ ++.+.++.. ......+. ..++|+++.|+|++.... +-|
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g---~s~~V~L~--------k~GPVhdv~W~~s~~EF~VvyG 290 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG---ESVSVPLL--------KEGPVHDVTWSPSGREFAVVYG 290 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC---ceEEEecC--------CCCCceEEEECCCCCEEEEEEe
Confidence 567776 333333322 44 466666543 22222222 118999999999986543 335
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---CeEEEEecCCC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GILAVVEQGEE 304 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~ 304 (343)
..=-++.|||+|- .++.-. -+++=+++-|+|.+. .++.|+-+ |.|-+||-..
T Consensus 291 fMPAkvtifnlr~--~~v~df------------~egpRN~~~fnp~g~----------ii~lAGFGNL~G~mEvwDv~n- 345 (566)
T KOG2315|consen 291 FMPAKVTIFNLRG--KPVFDF------------PEGPRNTAFFNPHGN----------IILLAGFGNLPGDMEVWDVPN- 345 (566)
T ss_pred cccceEEEEcCCC--CEeEeC------------CCCCccceEECCCCC----------EEEEeecCCCCCceEEEeccc-
Confidence 5677899999984 344433 367788999999998 45555543 6799999755
Q ss_pred cccccccc--cccceeeecCCCCCeeEEccCCceEEE
Q 019258 305 PFELLAEP--CAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 305 ~~~~~~~~--~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
..++... ..-.-++|+| +|++++.++...+++|
T Consensus 346 -~K~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 346 -RKLIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRV 380 (566)
T ss_pred -hhhccccccCCceEEEEcC-CCcEEEEEeccccEEe
Confidence 3344442 3456689999 6788888876644443
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.4e-06 Score=80.95 Aligned_cols=196 Identities=17% Similarity=0.125 Sum_probs=116.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEE-EEcCCC-
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVA-ASTLSG- 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~-~~s~dg- 92 (343)
.+...+...+|+| +++.|+..+.++. ...|++|++..... ..+. ...+.+....|+ +++.|+ +.+.+|
T Consensus 196 ~~~~~~~~p~wSp----DG~~la~~s~~~~--~~~l~~~~l~~g~~-~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 196 QSREPILSPRWSP----DGKRIAYVSFEQK--RPRIFVQNLDTGRR-EQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred cCCCceeeeeECC----CCCEEEEEEcCCC--CCEEEEEECCCCCE-EEcc--CCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 3456788899999 8888887776542 34588999854321 1122 233456678899 777766 444555
Q ss_pred -cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC--cEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 93 -SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 93 -~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
.|.+|++...+...+. .+........|+ ++.++..+ .+| .|.++|+.+++ ..++..... ......|+
T Consensus 267 ~~Iy~~d~~~~~~~~lt----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~--~~~~~~~S 339 (430)
T PRK00178 267 PEIYVMDLASRQLSRVT----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGN--YNARPRLS 339 (430)
T ss_pred ceEEEEECCCCCeEEcc----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCC--CccceEEC
Confidence 5777777644322221 233445566777 67666555 344 46677877764 444432222 23456788
Q ss_pred C-CCEEEEEeC-CC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEcc
Q 019258 167 S-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLR 239 (343)
Q Consensus 167 ~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~ 239 (343)
| ++.++..+. ++ .|.++|+.. ++ ...+... .......|+|++..++++...+|. +.++++.
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~t---g~-~~~lt~~--------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQR---GS-VRILTDT--------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCC---CC-EEEccCC--------CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 8 666666654 33 477888876 33 3333311 112245899999988777666554 5555664
No 257
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=6.8e-07 Score=73.59 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=127.4
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE---EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG---VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
.-..|+.|+..|...+|.....+......- .|...|+- .+-+.-.+..++.|.++++.+++.+. .......+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~~h~~~- 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFAVHNQN- 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccceeeccc-
Confidence 557899999999999998874443221111 12222221 12224457788999999999887653 222222222
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.....+++++ +..+++.++...|-.|.+.. .++.+........ .+.-.+..|+... ..||++++||++.||
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~~~~a~t-----~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIENIYEAPT-----SDHGFYNSFSEND-LQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeeeeEeccc-----CCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence 2578889999 88889999999999999876 4555544222111 1446678888764 578999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CCeEEEEecC
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DGILAVVEQG 302 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~i~~~~~~ 302 (343)
|+|....|...... ....|.+.+..+.|++.+.. -|+.-++ -+.+.+.|..
T Consensus 231 DVR~~~tpm~~~ss------trp~hnGa~R~c~Fsl~g~l---------DLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 231 DVRNMATPMAEISS------TRPHHNGAFRVCRFSLYGLL---------DLLFISEHFSRVHVVDTR 282 (344)
T ss_pred Eecccccchhhhcc------cCCCCCCceEEEEecCCCcc---------eEEEEecCcceEEEEEcc
Confidence 99987766554311 12458999999999987663 3444443 3556666653
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=7.7e-05 Score=64.27 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=166.8
Q ss_pred eEEEEeecCCCCCCceeeeeCC-CCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCc-eeeeeec
Q 019258 36 LAVLAIYDTDADSPSLETHSIS-LPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQ-VLLSVDE 109 (343)
Q Consensus 36 ~l~t~s~D~~~~~~~l~~w~~~-~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~-~~~~~~~ 109 (343)
.+..|++.+... --|..|++. ..............+.++=|+|+ +.+.|.++-. +|.|..|.+... ..+....
T Consensus 4 ~~YiGtyT~~~s-~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRES-QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCC-CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 345666663211 126788885 33345555566777888899999 6667877765 578999988742 2333322
Q ss_pred cCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCC-Cc--eEEEEEcCC--------CccceEEEEeCC-CCEEEEE
Q 019258 110 NSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIG-GG--EFKRVYDGN--------GLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~-~~--~~~~~~~~~--------~~~~v~~~~~~~-~~~l~t~ 174 (343)
....-..+-+.++++ ++.++++. .-|.|.++-+.. +. .+.....+. ....+....+.| ++.+++.
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 111111222677777 66776665 567889988855 21 111221111 111377888889 6666666
Q ss_pred eC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 175 GF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 175 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
.. -..|.+|++.. +.-.+........+ +--.-|.|||+++...+..--+++|.+|...........++ ..
T Consensus 163 DLG~Dri~~y~~~d-g~L~~~~~~~v~~G------~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i 233 (346)
T COG2706 163 DLGTDRIFLYDLDD-GKLTPADPAEVKPG------AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TI 233 (346)
T ss_pred ecCCceEEEEEccc-CccccccccccCCC------CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--ee
Confidence 65 66789999975 11122222222221 44678999999988777777799999999876422222111 11
Q ss_pred cccccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEec--CCCccccccc----ccccceeeecCCCC
Q 019258 254 EAVTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQ--GEEPFELLAE----PCAINSFDIDPQNP 325 (343)
Q Consensus 254 ~~~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~--~~~~~~~~~~----~~~i~s~~~~~~~~ 325 (343)
.+++... -.....+|..+|+++ +|+++- ....|.++.- .....++... ...-..|++++ .+
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGr----------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g 302 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGR----------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SG 302 (346)
T ss_pred ccCccccCCCCceeEEEECCCCC----------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CC
Confidence 1111111 134567888899987 444441 1125666543 2222222221 34468999998 67
Q ss_pred CeeEEccCC-ceEEEEeC
Q 019258 326 SDVICSLEW-ESIAIVSR 342 (343)
Q Consensus 326 ~~l~~~~~~-~~i~~~~~ 342 (343)
++|+++..+ +.|.+|.|
T Consensus 303 ~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 303 RFLIAANQKSDNITVFER 320 (346)
T ss_pred CEEEEEccCCCcEEEEEE
Confidence 999999866 57888765
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.1e-06 Score=75.59 Aligned_cols=223 Identities=13% Similarity=0.151 Sum_probs=135.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc--CCCeEEEEcC---
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS--HQSLVAASTL--- 90 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~--~~~~l~~~s~--- 90 (343)
+...|+.+..+|.+ ....+|+=--.....-..++||.++......++..-. ....=-.+.|. ...+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 35678999999932 2334433211111112357899997433332222211 11223356666 3344444433
Q ss_pred --------CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe--CCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 91 --------SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 91 --------dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
..+++++.+. ++...+.- .-.++|+++.|+ +..|+.+- .=-++.++|++.. .+..+ ...
T Consensus 242 ktn~SYYGEq~Lyll~t~-g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df---~eg- 312 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ-GESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEG- 312 (566)
T ss_pred CCCccccccceEEEEEec-CceEEEec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC---CCC-
Confidence 2356666665 22222221 246899999999 77776553 5567999998765 23333 333
Q ss_pred ceEEEEeCC-CCEEEEEeC---CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec-----
Q 019258 159 GFNCVKWAS-PTEFVTGGF---GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS----- 229 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~----- 229 (343)
+-.++-|+| ++.++.+|. -|.|.+||... .+.+..+... ..+-++|+|+|++++.+.+.
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~---------~tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAA---------NTTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccC---------CceEEEEcCCCcEEEEEeccccEEe
Confidence 567888999 888888877 68899999988 7777777643 36678999999987654443
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|..++||+..-. ..... ....+.+++.|-|...
T Consensus 381 dNg~KiwhytG~-~l~~~------------~f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 381 DNGIKIWHYTGS-LLHEK------------MFKSELLQVEWRPFND 413 (566)
T ss_pred cCCeEEEEecCc-eeehh------------hhhHhHhheeeeecCC
Confidence 788999998642 21111 1223688899987654
No 260
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.78 E-value=3e-06 Score=76.38 Aligned_cols=189 Identities=15% Similarity=0.099 Sum_probs=118.0
Q ss_pred CEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 126 SEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 126 ~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
+.+ ++-..++.|.+.|..+.+ +...+..... .-..+.+++ +.++..++.|+.|.++|+.+ .+.+.++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~-~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~~G--- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK-VVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIKVG--- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S-EEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE-S---
T ss_pred cEEEEEecCCCEEEEEECCCCe-EEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEecC---
Confidence 344 456678999999999985 5555554443 234467888 77888889999999999999 7777777643
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR 283 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~ 283 (343)
....+++++|+|++++++...++.+.++|.++.+....+...+. ....-+..+.+|..+|..+.
T Consensus 78 -----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~----~~~~~~~Rv~aIv~s~~~~~------- 141 (369)
T PF02239_consen 78 -----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM----PVDGPESRVAAIVASPGRPE------- 141 (369)
T ss_dssp -----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----TTTS---EEEEEE-SSSSE-------
T ss_pred -----CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc----cccccCCCceeEEecCCCCE-------
Confidence 34778999999999888888899999999988654443331000 00112456788888888775
Q ss_pred ccceEEEecCCeEEEEecCCC-cc--cccccccccceeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 284 VLPAMFCSEDGILAVVEQGEE-PF--ELLAEPCAINSFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 284 ~~~l~s~s~dg~i~~~~~~~~-~~--~~~~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
++++--+-+.|++.+.... .. ...........+.++| ++++++.+ .....|.+++
T Consensus 142 --fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 142 --FVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp --EEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEE
T ss_pred --EEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEe
Confidence 5556666689999987543 21 1122234567788888 45665543 4444666554
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.77 E-value=4.6e-07 Score=76.98 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=102.2
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC--CCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA--SLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~--~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
.+++++.+.+ +.+.|+.|-..+. +.-+.+.++- ...+...+.|.+.|..+-|+ ....+++.+.|..+.
T Consensus 69 ~~~~~~~y~~----e~~~L~vg~~ngt-----vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 69 SPCSAMEYVS----ESRRLYVGQDNGT-----VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred CCceEeeeec----cceEEEEEEecce-----EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 4567777777 6667777755543 2244443321 12223345677888888887 556666666554332
Q ss_pred EEEcc-Cc--------------------------------------eeeeeeccCCccccCeEEEEec--CCEEEEEeCC
Q 019258 96 VLSSA-MQ--------------------------------------VLLSVDENSGFHVGPISGVDLT--GSECVSVGED 134 (343)
Q Consensus 96 v~~~~-~~--------------------------------------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d 134 (343)
|... .+ +.+.+.....+|.++++++.|. ...+.+|..|
T Consensus 140 -~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 140 -WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred -EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 2110 00 0011222335689999999999 7788999999
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
..+.+||+...+-......+|.. .|..+.+.+ ...+++++.||.|.+||...
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999764333333344444 688888888 78899999999999999854
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=5.7e-06 Score=76.81 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=112.8
Q ss_pred cccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCC--cEEEEE
Q 019258 114 HVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGY--GLQWWD 184 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~--~i~iwd 184 (343)
+...+....|+ ++.++..+.+ ..|.+||+.++. ...+..... ......|+| +..++ +...++ .|.+||
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQITNFEG--LNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEccCCCC--CcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 55678888998 7788766543 358889998874 444332222 355789999 66665 444455 577888
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCcc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
+.. + ....+.... .......|+|++..++.+...+| .|+++|+..++. ..+.. . .
T Consensus 274 ~~~---~-~~~~lt~~~-------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~---------~--~ 330 (430)
T PRK00178 274 LAS---R-QLSRVTNHP-------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTF---------V--G 330 (430)
T ss_pred CCC---C-CeEEcccCC-------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeec---------C--C
Confidence 876 3 334443322 33556789999988776655555 477777765432 22220 1 1
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEe-cCC--eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC---ce
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDG--ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW---ES 336 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg--~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~---~~ 336 (343)
.......|+|++. .++..+ .++ .|++++........+.+.....+..|+| +|+.++..+.. ..
T Consensus 331 ~~~~~~~~Spdg~----------~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 331 NYNARPRLSADGK----------TLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAP-NGTMLIYATRQQGRGV 399 (430)
T ss_pred CCccceEECCCCC----------EEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 2233568999987 455444 344 4777876543333344332334567888 56777766543 24
Q ss_pred EEEE
Q 019258 337 IAIV 340 (343)
Q Consensus 337 i~~~ 340 (343)
++++
T Consensus 400 l~~~ 403 (430)
T PRK00178 400 LMLV 403 (430)
T ss_pred EEEE
Confidence 5544
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=5.3e-08 Score=79.59 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeecc-CCccccCeEEEEecCCEEEEEeC------CCcEEEEECCCCceEEEEEc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDEN-SGFHVGPISGVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~ 153 (343)
.+..++.+..||.+.+++.+. .+...+. ...|.+.....-.....++..+. -+..+.|+++..+.......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechH--HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 567799999999999998873 1111111 11122211111111222333332 23456666655332222212
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
..+ .|.+++-+| ++.+++|+.||.+-+||.|. ...|...++.|. .++.-+-|||+.+.-++++++||
T Consensus 178 ~~~--~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn--~~~p~S~l~ahk-------~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 178 ALD--AVTALCSHPAQQHLVCCGTDDGIVGLWDARN--VAMPVSLLKAHK-------AEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred ccc--cchhhhCCcccccEEEEecCCCeEEEEEccc--ccchHHHHHHhh-------hhhhheeccCCCchheeEecCCC
Confidence 222 488888888 77888888999999999999 444555566665 88999999999877778999999
Q ss_pred cEEEEEccC
Q 019258 232 TVFAWDLRW 240 (343)
Q Consensus 232 ~v~iwd~~~ 240 (343)
.+--||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999864
No 264
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.74 E-value=4e-09 Score=96.01 Aligned_cols=204 Identities=14% Similarity=0.182 Sum_probs=134.0
Q ss_pred CCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEe----CCCcEEE
Q 019258 70 PPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVG----EDGRVNL 139 (343)
Q Consensus 70 ~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s----~dg~v~~ 139 (343)
....+.|+++. +...+++|..+|.|.+-.+...+.- -.+....|..+|++++|+ .+.++.|- .|..+++
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34457777766 4467999999999999888743221 123334688899999999 34555542 5678999
Q ss_pred EECCCCc-eEEE--EEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEE
Q 019258 140 VSVIGGG-EFKR--VYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 140 wd~~~~~-~~~~--~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
||+.+.- .+.. .+..........++|.. ...+++|...+.++++|+|+ .......+. . ..+..+.
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svn--T-------k~vqG~t 202 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVN--T-------KYVQGIT 202 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--hhhhhhhhh--h-------hhcccce
Confidence 9998741 0111 11111112466788887 77788888899999999997 122111121 1 3466788
Q ss_pred EcCCCCeEEEEEecCCcEEEEE-ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWD-LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED- 293 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d- 293 (343)
+.|-..+.+ +...||.|.+|| .++-+.|+....... ......+.+++|+|..+. .+++++.|
T Consensus 203 Vdp~~~nY~-cs~~dg~iAiwD~~rnienpl~~i~~~~------N~~~~~l~~~aycPtrtg---------lla~l~RdS 266 (783)
T KOG1008|consen 203 VDPFSPNYF-CSNSDGDIAIWDTYRNIENPLQIILRNE------NKKPKQLFALAYCPTRTG---------LLAVLSRDS 266 (783)
T ss_pred ecCCCCCce-eccccCceeeccchhhhccHHHHHhhCC------CCcccceeeEEeccCCcc---------hhhhhccCc
Confidence 888555665 456799999999 777666655442111 111235999999999876 78888877
Q ss_pred CeEEEEec
Q 019258 294 GILAVVEQ 301 (343)
Q Consensus 294 g~i~~~~~ 301 (343)
++|+.++.
T Consensus 267 ~tIrlydi 274 (783)
T KOG1008|consen 267 ITIRLYDI 274 (783)
T ss_pred ceEEEecc
Confidence 46887764
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=6.9e-06 Score=76.41 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred cccCeEEEEec--CCEEEEEeC-CC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCc--EEEEE
Q 019258 114 HVGPISGVDLT--GSECVSVGE-DG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYG--LQWWD 184 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~--i~iwd 184 (343)
+...+.+..|+ ++.++..+. ++ .|.+||+.+++ ...+..... ......|+| +..++ +.+.++. |.++|
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSFPG--INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCCCC--CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 44577888888 777776543 33 57888988764 333322222 245678999 66555 4555665 66677
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCCceeeeeecCCCCcccccCCcc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
+.. ..+..+..+. ......+|+|++..++++...+|. |+++|+..++. ..+. ...
T Consensus 293 l~t----g~~~~lt~~~-------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt-----------~~g 349 (448)
T PRK04792 293 IAT----KALTRITRHR-------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLT-----------FEG 349 (448)
T ss_pred CCC----CCeEECccCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEe-----------cCC
Confidence 765 3344444322 345678999999888777655555 56667665432 2221 011
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC-c--e
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW-E--S 336 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~-~--~ 336 (343)
.......|+|++. .++..+. ++ .|++++........+.......+..|+| +|+.|+..+.+ + .
T Consensus 350 ~~~~~~~~SpDG~----------~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~sp-dG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 350 EQNLGGSITPDGR----------SMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAP-NGTMVIYSTTYQGKQV 418 (448)
T ss_pred CCCcCeeECCCCC----------EEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 2233568999987 4554444 44 3555665443333333332233457888 55776665543 3 2
Q ss_pred EEEEe
Q 019258 337 IAIVS 341 (343)
Q Consensus 337 i~~~~ 341 (343)
+++++
T Consensus 419 l~~~~ 423 (448)
T PRK04792 419 LAAVS 423 (448)
T ss_pred EEEEE
Confidence 55543
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.6e-05 Score=65.72 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=103.3
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccC--eEEEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCCCc
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP--ISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGL 157 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~--v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~ 157 (343)
-.+.-++.|.+++++++.....-.. .|... ++++.++ +...++.++...|..|.++... ...+++.....
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFA-----VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred cceeeccCCcceeEEEEecCcccce-----eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 3466677888888888763221111 24433 6677777 7888999999999999997632 34444444333
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-eEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-HTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~~~sg~~dg~v~i 235 (343)
..=.+.+|+. ...|+++..||++.|||+|. .+.|....... +..+.+.+..+.|+|.|. .+++..-.=+.+.+
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~--~~tpm~~~sst---rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRN--MATPMAEISST---RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecc--cccchhhhccc---CCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 3566788888 77899999999999999998 44444333221 222448899999998764 23333344568999
Q ss_pred EEccCCceeee
Q 019258 236 WDLRWQQQSIV 246 (343)
Q Consensus 236 wd~~~~~~~~~ 246 (343)
.|+|+......
T Consensus 279 ~D~R~~~~~q~ 289 (344)
T KOG4532|consen 279 VDTRNYVNHQV 289 (344)
T ss_pred EEcccCceeeE
Confidence 99998654433
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.4e-08 Score=83.09 Aligned_cols=183 Identities=12% Similarity=0.116 Sum_probs=114.5
Q ss_pred CccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 65 HSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
.++++.+..-.| +|+ .+.. ++.+.+-.|-+-++.++..-.+ .-++.|.+++|. ++.+..|+..|.|..
T Consensus 206 ~~SlQi~~a~~C-awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf-----~sksDVfAlQf~~s~nLv~~GcRngeI~~ 278 (425)
T KOG2695|consen 206 LCSLQIPKAWSC-AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSF-----QSKSDVFALQFAGSDNLVFNGCRNGEIFV 278 (425)
T ss_pred eeeecCCcchhh-hhhhccceee-ecccccceeEEEEeeccccccc-----ccchhHHHHHhcccCCeeEecccCCcEEE
Confidence 444554443333 666 3344 4444555566667664322111 134578888887 788899999999999
Q ss_pred EECCCC----ceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCC---eeEEecccCCCCCcccC
Q 019258 140 VSVIGG----GEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGP---VLQFKGNFGSQGKASGM 210 (343)
Q Consensus 140 wd~~~~----~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~ 210 (343)
.|++.+ ..+...+ .|++ .|+++.... ++.|++.+.+|+|++||+|. .+. +.++++|... ..
T Consensus 279 iDLR~rnqG~~~~a~rl-yh~S-svtslq~Lq~s~q~LmaS~M~gkikLyD~R~---~K~~~~V~qYeGHvN~-----~a 348 (425)
T KOG2695|consen 279 IDLRCRNQGNGWCAQRL-YHDS-SVTSLQILQFSQQKLMASDMTGKIKLYDLRA---TKCKKSVMQYEGHVNL-----SA 348 (425)
T ss_pred EEeeecccCCCcceEEE-EcCc-chhhhhhhccccceEeeccCcCceeEeeehh---hhcccceeeeeccccc-----cc
Confidence 999763 2223332 2444 688887765 67788888899999999998 555 7778866521 11
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
-.-+..++.. ..++++++|...+||.++.+.....+.. .+..-+..++.++|..
T Consensus 349 ~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf-------~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 349 YLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF-------PYSASEVDIPSVAFDS 402 (425)
T ss_pred cccccccccc-ceEEEccCeeEEEEEecccCceeeccCC-------CCccccccccceehhc
Confidence 2223344544 4567799999999999997644333321 1123344567777753
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=5.9e-05 Score=64.96 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=152.0
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCC-CeeEEEcc-CCCeEEEEc
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPT-RISSLSTS-HQSLVAAST 89 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~-~v~~v~~~-~~~~l~~~s 89 (343)
........++=|+|+| +++.|-++-.+++.+. +.-+.+..+ .....+......+ +-.-++.+ ++++++++.
T Consensus 34 ~~v~~~~nptyl~~~~----~~~~LY~v~~~~~~gg--vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 34 QLVAELGNPTYLAVNP----DQRHLYVVNEPGEEGG--VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred hhccccCCCceEEECC----CCCEEEEEEecCCcCc--EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence 3344556778889999 7888888877765553 445555332 2222222222222 22667777 677887777
Q ss_pred C-CCcEEEEEccCceeeeeeccCCccccC----------eEEEEec--CCEEEEEe--CCCcEEEEECCCCceEE-EEEc
Q 019258 90 L-SGSLHVLSSAMQVLLSVDENSGFHVGP----------ISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFK-RVYD 153 (343)
Q Consensus 90 ~-dg~v~v~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~-~~~~ 153 (343)
. .|.|.++.++....+......-.|.++ +....+. +++++++. .| .|.+|++..++... ....
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccc
Confidence 5 789999999742222111111124443 7777777 66776654 55 49999998754211 1111
Q ss_pred CCCccceEEEEeCC-CCEEEEE-eCCCcEEEEEccccCCCCCeeEEeccc----CCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNF----GSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
-.....-+-+.|+| .+..-.. -.+++|.+|+... ....+..+..+. +-.+. .+...|..+|+|+++.++-
T Consensus 187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~--~~g~~~~lQ~i~tlP~dF~g~--~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP--AVGKFEELQTIDTLPEDFTGT--NWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC--CCceEEEeeeeccCccccCCC--CceeEEEECCCCCEEEEec
Confidence 12233689999999 4433333 3499999999866 223333332221 11111 5577899999999887664
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC-eEEEEecC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG-ILAVVEQG 302 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg-~i~~~~~~ 302 (343)
-....|.+|-+......+.+.... ..+...-....|+|++. +|+.+.+++ .|.++..+
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~-------~teg~~PR~F~i~~~g~----------~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGIT-------PTEGQFPRDFNINPSGR----------FLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEe-------ccCCcCCccceeCCCCC----------EEEEEccCCCcEEEEEEc
Confidence 444578888765543333333111 22333457788888877 677776665 57776544
No 269
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.74 E-value=7.9e-06 Score=73.74 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=117.6
Q ss_pred CeE-EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 83 SLV-AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 83 ~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+++ ++-..+|.|.+.|..+.+.+..... ....-..+.++ +++++.++.||.|.++|+.+.+...++ .... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i-~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI-KVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE-E-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE-ecCC--C
Confidence 444 4555689999999986655544432 11222335555 788999999999999999998644444 3333 4
Q ss_pred eEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 160 FNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
..++++++ +.+++++. ..+.+.++|.++ .+++..+.............+..|..+|..+..+++--+.+.|.+.|
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 78899999 77776665 499999999988 77787765432111112245778887887765555556668898889
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
......+.... ...........|+|++.. ++++.-.++.|-+++...
T Consensus 157 y~d~~~~~~~~----------i~~g~~~~D~~~dpdgry---------~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 157 YSDPKNLKVTT----------IKVGRFPHDGGFDPDGRY---------FLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TTTSSCEEEEE----------EE--TTEEEEEE-TTSSE---------EEEEEGGGTEEEEEETTT
T ss_pred eccccccceee----------ecccccccccccCcccce---------eeecccccceeEEEeecc
Confidence 87653322211 112344567899999874 455556666777777544
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=2.4e-05 Score=72.27 Aligned_cols=238 Identities=10% Similarity=-0.017 Sum_probs=128.3
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe---EEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEE
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL---VAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVD 122 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~---l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~ 122 (343)
..||+.+....+. ..++ .....+.+=.|+ ++.. +++...+| .|.+.++..++...+.. ..+......
T Consensus 165 ~~l~~~d~dG~~~-~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCc-eEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCCccceE
Confidence 3567777644321 1122 233455667888 6543 23444454 45566666444333332 223344567
Q ss_pred ec--CCEEEEEeC-CC----cEEEEECCCC--ceEEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCC
Q 019258 123 LT--GSECVSVGE-DG----RVNLVSVIGG--GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSG 191 (343)
Q Consensus 123 ~~--~~~~~s~s~-dg----~v~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~ 191 (343)
|+ |+.++..+. +| .+..|++..+ ....++...... .....+|+| +..|+..+ .++...+|.+.....+
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 77 777775542 23 3444676642 134444433222 245679999 66666655 4676666654320012
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.....+.... ..+....|+|+|..++.++..+| .|.+||+..++. ..+. .....+....
T Consensus 317 ~~~~~lt~~~-------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt-----------~~~~~~~~p~ 377 (428)
T PRK01029 317 QSPRLLTKKY-------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLT-----------TSPENKESPS 377 (428)
T ss_pred cceEEeccCC-------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEcc-----------CCCCCccceE
Confidence 2233343222 44678899999988776655544 689999977543 2222 1123456789
Q ss_pred EeecCCCCcCCCCCccceEEEecC--CeEEEEecCCCccc-ccccccccceeeecC
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSED--GILAVVEQGEEPFE-LLAEPCAINSFDIDP 322 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~d--g~i~~~~~~~~~~~-~~~~~~~i~s~~~~~ 322 (343)
|+|++.. .++++..+ ..|++++....... +......+...+|+|
T Consensus 378 wSpDG~~---------L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 378 WAIDSLH---------LVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ECCCCCE---------EEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecC
Confidence 9999874 33344333 45888886544333 333334455666665
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.72 E-value=2.6e-05 Score=70.12 Aligned_cols=259 Identities=10% Similarity=0.061 Sum_probs=147.4
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecC-CCCCCceeeeeCCCC-CCCCCCccCC-CCCCeeEEEcc-CCCeEEEEc-CC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDT-DADSPSLETHSISLP-ASLTPHSQWT-PPTRISSLSTS-HQSLVAAST-LS 91 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~-~~~~~~l~~w~~~~~-~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s-~d 91 (343)
.....+-++++| ++++|-+..... ..+ .|..|.+..+ .....+.... .......++.. ++.+|+++. .+
T Consensus 35 ~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g--~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 35 EGENPSWLAVSP----DGRRLYVVNEGSGDSG--GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp ESSSECCEEE-T----TSSEEEEEETTSSTTT--EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCCceEEEEe----CCCEEEEEEccccCCC--CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC
Confidence 445566677777 777777776653 223 4557776443 2333333333 23344567776 777777776 48
Q ss_pred CcEEEEEccCceeeee----ecc-------CCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCc-eE--EEEEcC
Q 019258 92 GSLHVLSSAMQVLLSV----DEN-------SGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGG-EF--KRVYDG 154 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~----~~~-------~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~-~~--~~~~~~ 154 (343)
|.|.++++.....+.. ... .+.-....+++.++ +++++.+. ....|.+|+++... .+ ...+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999984322211 100 00112346788887 66666543 34479999987643 12 122222
Q ss_pred CCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccCCCCCee---EEeccc-CCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 155 NGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAGSGGPVL---QFKGNF-GSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~~-~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
......+.+.|+| +..+ ++.-.+++|.++++.. ....+. .+.... ...+. .....|+++|++++++++-.
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP--SDGSLTEIQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEEC
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc--cCCceeEEEEeeecccccccc--CCceeEEEecCCCEEEEEec
Confidence 3333789999999 4544 5555599999999983 122222 222111 00111 25889999999999998888
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.+|.+|++......+.....- ......-+.+.++|++.. .++++-.++.|.+++.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~-------~~~G~~Pr~~~~s~~g~~---------l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTV-------PTGGKFPRHFAFSPDGRY---------LYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEE-------EESSSSEEEEEE-TTSSE---------EEEEETTTTEEEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEE-------eCCCCCccEEEEeCCCCE---------EEEEecCCCeEEEEEE
Confidence 88999999994322111211000 111233689999999884 4445557778888765
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2.4e-06 Score=79.33 Aligned_cols=284 Identities=12% Similarity=0.088 Sum_probs=177.9
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC---CCCC----------CccCCCCCCeeEEEcc-
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA---SLTP----------HSQWTPPTRISSLSTS- 80 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~---~~~~----------~~~~~~~~~v~~v~~~- 80 (343)
+|..-+..++.|.. ...+++.|+.|+- |++..+..+. ..+. .+.-+|.+.|.-+.|.
T Consensus 11 iPnnvkL~c~~WNk----e~gyIAcgG~dGl-----LKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNK----ESGYIACGGADGL-----LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCCCceEEEEEEcc----cCCeEEeccccce-----eEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 45556789999999 7889999999974 5576663321 1111 1223688889999999
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-EEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR-VYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~-~~~~~~~ 157 (343)
....|-++..+|-|.+|-+-++.-..-.- ....+..|.+++|+ |..+..+-.||.|.+=.++.++ +.. -+.+.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~-- 157 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQ-- 157 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchh--
Confidence 66677777789999999886443211110 01245679999999 9999999999999987776642 221 11111
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCC-----CCeeEEecccCCCCCcccCeEEEEEc--------CCCCeE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG-----GPVLQFKGNFGSQGKASGMIHSVDIH--------PSRKHT 223 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~--------p~~~~~ 223 (343)
....+.|++ ...++.+-..|.+.++|... +.. .+..+..+.... .+..|..+.|. |+. ..
T Consensus 158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl~~~c~Vn~tg~~s~---~~~kia~i~w~~g~~~~v~pdr-P~ 231 (1189)
T KOG2041|consen 158 -LLAHVLWSEDLEQALFKKANGETHLYDNQG-NFERKLEKDCEVNGTGIFSN---FPTKIAEIEWNTGPYQPVPPDR-PR 231 (1189)
T ss_pred -eccceeecccHHHHHhhhcCCcEEEecccc-cHHHhhhhceEEeeeeeecC---CCccccceeeccCccccCCCCC-CE
Confidence 355678888 66677777899999999643 000 111111111000 00224455554 343 46
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC---------
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG--------- 294 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--------- 294 (343)
++.+..+|.+.+---.+...|..+- . .-.+....|++++. .|+.|+.|.
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~d----------t--gm~~vgakWnh~G~----------vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVD----------T--GMKIVGAKWNHNGA----------VLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEe----------c--ccEeecceecCCCc----------EEEEccCcccccCccccc
Confidence 7889999999988666656666654 2 25688899999887 688887653
Q ss_pred eEEEEecCCCcc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEPF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.|..+..-.... .+......|.++.|-+. |-.++-+ -++.||+-+
T Consensus 290 ~v~Fysp~G~i~gtlkvpg~~It~lsWEg~-gLriA~A-vdsfiyfan 335 (1189)
T KOG2041|consen 290 KVHFYSPYGHIVGTLKVPGSCITGLSWEGT-GLRIAIA-VDSFIYFAN 335 (1189)
T ss_pred eEEEeccchhheEEEecCCceeeeeEEcCC-ceEEEEE-ecceEEEEe
Confidence 233343322222 22233467999999873 3333333 356777654
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.5e-05 Score=72.10 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=163.3
Q ss_pred ceeccCCCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCC------CCCceeeeeCCCCCCCCCCccCCCCCCee
Q 019258 2 AITGVRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDA------DSPSLETHSISLPASLTPHSQWTPPTRIS 75 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~------~~~~l~~w~~~~~~~~~~~~~~~~~~~v~ 75 (343)
++=|..+--+++||.|+. |--+.++| ..++|||=|..... ..-.|.|||+-.......+..+..+..+.
T Consensus 234 ~lWGG~~f~r~~RF~Hp~-Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W 308 (698)
T KOG2314|consen 234 ALWGGESFDRIQRFYHPG-VQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW 308 (698)
T ss_pred eeecCccHHHHHhccCCC-ceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc
Confidence 344555666889999875 66788999 78899988754332 11358899996543333333322233333
Q ss_pred E-EEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe--C---CCcEEEEECCCCc
Q 019258 76 S-LSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG--E---DGRVNLVSVIGGG 146 (343)
Q Consensus 76 ~-v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s--~---dg~v~~wd~~~~~ 146 (343)
. ..|+ ++.++|--.. ..|.||+... +.+.......-..|..+.|+ +..|+-=. . -.++.+..+.+.+
T Consensus 309 P~frWS~DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 309 PIFRWSHDDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred ceEEeccCCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc
Confidence 2 4577 5555554444 5799998874 22222222344578888888 33333211 1 1234455554442
Q ss_pred eEEEEEcCCCccceEEE--EeCC-CCEEE----------EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 147 EFKRVYDGNGLVGFNCV--KWAS-PTEFV----------TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~--~~~~-~~~l~----------t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.++.. .-+ .|..+ .|-. +.+|. +.+.-..+.|+.+|. ..-|+..+... ..|..
T Consensus 385 ~iRt~-nlf---nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--KdIpve~velk--------e~vi~ 450 (698)
T KOG2314|consen 385 EIRTK-NLF---NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--KDIPVEVVELK--------ESVIA 450 (698)
T ss_pred eeeec-cce---eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec--cCCCceeeecc--------hheee
Confidence 22211 111 12222 2222 22222 223334567777777 23344333322 67999
Q ss_pred EEEcCCCCeEEEEEec--CCcEEEEEccC-CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 214 VDIHPSRKHTCLAGGS--SGTVFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~--dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
.+|.|.|....+..+. ..++.+|-+.+ ...+..+. ..-....+.|.|+|.+.. ++.+
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk----------~~dk~~~N~vfwsPkG~f----------vvva 510 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK----------ELDKKFANTVFWSPKGRF----------VVVA 510 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh----------hhcccccceEEEcCCCcE----------EEEE
Confidence 9999998654433333 33588888773 33332222 223355788999999984 4433
Q ss_pred ---ecCCeEEEEecCCCc--ccccccccccceeeecCCCCCeeEEccCCc
Q 019258 291 ---SEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 291 ---s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
|..|.+..+|..... ..-..++...+.+.|+| .|.|++++++..
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~w 559 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSSSW 559 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEeeehh
Confidence 567788888876422 22233467789999999 789999887653
No 274
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.6e-05 Score=73.98 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=128.0
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC-CC--cEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL-SG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~-dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++++...... .........+.+..|+ +++.|+..+. ++ .|.++++..++...+... .+......|+
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECC
Confidence 566777744322 1223456678899999 7777776554 33 477777765443322221 1223456777
Q ss_pred -CCEEE-EEeCCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCc--EEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYG--LQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~--i~iwd~~~~~~~~~~~~ 196 (343)
++.++ +.+.+|. |.++|+.+++ ..++..... ......|+| +..++..+. ++. |.++|+.. + ....
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~---g-~~~~ 344 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS---G-KVSR 344 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCC---C-CEEE
Confidence 77665 4566775 7777887763 444433222 356788999 565655543 444 55556654 3 2333
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... ......+|+|++..++++...++. |.++|+..+.. ..+. .. .......|+|++
T Consensus 345 Lt~~g-------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt----------~~--~~d~~ps~spdG 404 (448)
T PRK04792 345 LTFEG-------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLT----------ST--RLDESPSVAPNG 404 (448)
T ss_pred EecCC-------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEcc----------CC--CCCCCceECCCC
Confidence 32111 223456899999888777666664 55567766432 2221 11 111234799998
Q ss_pred CCCcCCCCCccceEEEecCCe--EEEEecCCCccccccc-ccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGI--LAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~--i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
.. .+++...+|. |++++........+.. ...+...+|+|
T Consensus 405 ~~---------I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 405 TM---------VIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CE---------EEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 84 3444444553 6777765443333333 33456666665
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.67 E-value=2.2e-05 Score=71.50 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+++.+++++.+|.+..+|..+++.+-.... .+.+.+ ....++.++.++.+|.|..||.++++...+. .....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~-- 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTY-SRVTP-- 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEE-ccCCC--
Confidence 467888899999999999876554322111 112221 1223677888888999999999988543333 22111
Q ss_pred eEEEE--eCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe----EEEEEcCCCCeEEEEEecC
Q 019258 160 FNCVK--WAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI----HSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 160 v~~~~--~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~v~~~p~~~~~~~sg~~d 230 (343)
...+. -.| .+.++.+..++.+..+|+++ ++.+.+............... .+..+. +. .+..++.+
T Consensus 177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~t---G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~ 250 (377)
T TIGR03300 177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQT---GQPLWEQRVALPKGRTELERLVDVDGDPVVD--GG-QVYAVSYQ 250 (377)
T ss_pred ceeecCCCCCEEECCEEEEECCCCEEEEEEccC---CCEeeeeccccCCCCCchhhhhccCCccEEE--CC-EEEEEEcC
Confidence 11110 011 45677888899999999988 655544321110000000000 011111 23 34567889
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
|.++.||.++++...... . ........ .+. .++.++.||.|+.++.... ..+-.
T Consensus 251 g~l~a~d~~tG~~~W~~~------------~-~~~~~p~~--~~~----------~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD------------A-SSYQGPAV--DDN----------RLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CEEEEEECCCCcEEEeec------------c-CCccCceE--eCC----------EEEEECCCCeEEEEECCCCcEEEcc
Confidence 999999998875544332 0 11111222 233 6788889999999987532 23322
Q ss_pred cc--ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 310 AE--PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 310 ~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. .....+..+.+ ..|+.++.++.+++++.
T Consensus 306 ~~~~~~~~ssp~i~g---~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 306 DELKYRQLTAPAVVG---GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccccCCccccCEEEC---CEEEEEeCCCEEEEEEC
Confidence 11 12234444443 68888888999998864
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.9e-07 Score=85.16 Aligned_cols=245 Identities=11% Similarity=0.104 Sum_probs=157.9
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce------------eeeeeccCCccccCeEEEEec--CCEEEEE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV------------LLSVDENSGFHVGPISGVDLT--GSECVSV 131 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~------------~~~~~~~~~~h~~~v~~~~~~--~~~~~s~ 131 (343)
.++.+....++.|. +..+++.|+.||.+++..+.+.. .+.......+|.+.|.-+.|+ .+.+-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 35667788999999 88999999999999999886211 123333455799999999999 6778888
Q ss_pred eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcc
Q 019258 132 GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKAS 208 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~ 208 (343)
..+|.|.+|-+-.+.-+..++.....+.|.+++|+. +..+...-.||.|.+=.+.. ..+.. +++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----NRIwgKeLkg--------- 156 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----NRIWGKELKG--------- 156 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----ceecchhcch---------
Confidence 899999999987765444444444444789999998 88888888899888765543 22221 221
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCC
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ-------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
.....+.|+++...+ +.+-.+|.+.++|....- ..+...+.- ......|-.+.|... +. ....
T Consensus 157 ~~l~hv~ws~D~~~~-Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~-------s~~~~kia~i~w~~g-~~-~~v~ 226 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQA-LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF-------SNFPTKIAEIEWNTG-PY-QPVP 226 (1189)
T ss_pred heccceeecccHHHH-HhhhcCCcEEEecccccHHHhhhhceEEeeeeee-------cCCCccccceeeccC-cc-ccCC
Confidence 225577889986544 457788999999974321 111111100 111223556666511 10 0111
Q ss_pred CCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCC
Q 019258 282 SRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 282 ~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
-..|.|+.|-+.|++.+.+.-.. ...+...+-.+...-|+++..-..+||.+.
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 11127999999999988765332 223344456677788888433344566543
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=1.1e-06 Score=76.15 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=107.0
Q ss_pred EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc
Q 019258 25 RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ 102 (343)
Q Consensus 25 ~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~ 102 (343)
.|.+..++++++++.+..++. ..+.++.+... .++......+..-+++.|. +......+-.-|.++-+++-..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~-----~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQ-----RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCc-----eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 455555568888887754432 33555533222 3444444555556666666 4444555555555555554321
Q ss_pred eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcE
Q 019258 103 VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGL 180 (343)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i 180 (343)
.. ...+..-+|-.-++.+.++ ++.++++..|..|++-.....-......-+|.. -|..++.-++..|+++|.|++|
T Consensus 140 ~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 140 DS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDNYLLLSGSGDKTL 217 (390)
T ss_pred cc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccCceeeecCCCCcE
Confidence 11 1112223699999999999 888999999999999777654333444455665 7889998888889999999999
Q ss_pred EEEEccccCCCCCeeEEe
Q 019258 181 QWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~ 198 (343)
++||.++ ++.+.++.
T Consensus 218 r~Wd~~s---gk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITS---GKLLDTCD 232 (390)
T ss_pred EEEeccc---CCcccccc
Confidence 9999999 77776554
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.58 E-value=2.7e-06 Score=80.92 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=134.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
++..++.|+-...+..+|++...+..... ...+.|+=+..++..+.+|...|+|.+-|.++.+ +...+..|.. .+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~---v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~-si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN---VSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSG-SI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee---ccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeecccc-ce
Confidence 56677788777788888888554443332 2233577788789999999999999999999984 6777777776 67
Q ss_pred EEEEeCCCCEEEEEeC---------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 161 NCVKWASPTEFVTGGF---------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.++... ++.|+++|. |.-|++||+|+ -+.+..+..+. + -.-+.|+|.=...++..+..|
T Consensus 221 SDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRm---mral~PI~~~~-------~-P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 221 SDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRM---MRALSPIQFPY-------G-PQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred eeeecc-CCeEEEeecccccccccccchhhhhhhhh---hhccCCccccc-------C-chhhhhcccccceEEEEeccc
Confidence 766533 778888876 55689999998 55555444333 2 245778888777788899999
Q ss_pred cEEEEE---ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWD---LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.+-| +.++....... ......+.++.+++.+. .++.+-.+|.|-+|....
T Consensus 289 q~q~vd~~~lsNP~~~~~~v----------~p~~s~i~~fDiSsn~~----------alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMV----------NPNGSGISAFDISSNGD----------ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred ceeeccccccCCCccceeEE----------ccCCCcceeEEecCCCc----------eEEEecccCcEeeecCCC
Confidence 999999 44332222222 22345589999999887 799999999999997543
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.7e-07 Score=79.60 Aligned_cols=128 Identities=11% Similarity=0.176 Sum_probs=94.6
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-e--eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-V--LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNL 139 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~--~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~ 139 (343)
.+...+.|.++.|. .+++++.|..+|.|..+|++.. + .-..... .|...|++++.. +..+++.+.+|+|++
T Consensus 248 sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 248 SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeE
Confidence 45667899999999 7899999999999999999822 1 1111111 388889998765 889999999999999
Q ss_pred EECCCCc--eEEEEEcCCCcc-ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 140 VSVIGGG--EFKRVYDGNGLV-GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 140 wd~~~~~--~~~~~~~~~~~~-~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
||.+--+ .-...+++|... ...-+..++ ...++++++|-..|||.++. ++.+.++..
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~---ghLl~tipf 386 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS---GHLLCTIPF 386 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc---CceeeccCC
Confidence 9997642 235666766431 122233345 77899999999999999998 777776553
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=3.8e-05 Score=70.95 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=119.5
Q ss_pred ceeeEEecCCCCCCCCe--EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC-CC--c
Q 019258 20 YIDAVRWLPPLSPLSKL--AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL-SG--S 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~--l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~-dg--~ 93 (343)
.+..=+|+| +++. ++-.|+.+ ++..|++.++.... ...+. ..++......|+ +++.|+..+. +| .
T Consensus 186 ~~~sP~wSP----DG~~~~~~y~S~~~--g~~~I~~~~l~~g~-~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 186 LSITPTWMH----IGSGFPYLYVSYKL--GVPKIFLGSLENPA-GKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred CcccceEcc----CCCceEEEEEEccC--CCceEEEEECCCCC-ceEee--cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 345668999 7654 32234332 23457788885432 22222 244555678899 7777766543 33 2
Q ss_pred --EEEEEccCc---eeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEE--CCC-CceEEEEEcCCCccceEE
Q 019258 94 --LHVLSSAMQ---VLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVS--VIG-GGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 94 --v~v~~~~~~---~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd--~~~-~~~~~~~~~~~~~~~v~~ 162 (343)
+.+|++... ....+.. .+.+......|+ |+.++..+ .+|...+|. +.. +.....+.. ... .+..
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~---~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~-~~~~ 331 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLN---EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYR-NSSC 331 (428)
T ss_pred eeEEEeecccCCCCcceEeec---CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCC-Cccc
Confidence 333555421 1122221 122234566787 77777655 567666664 432 222333322 222 4678
Q ss_pred EEeCC-CCEEEEEeCC---CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC--CcEEEE
Q 019258 163 VKWAS-PTEFVTGGFG---YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS--GTVFAW 236 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d--g~v~iw 236 (343)
..|+| ++.++..+.+ ..|.+||+.. ++ ...+.... ..+....|+|++..+++++..+ ..|+++
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~---g~-~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLAT---GR-DYQLTTSP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCC---CC-eEEccCCC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 89999 7667666543 4689999976 33 33333221 3466789999998877665543 458888
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
|+..+. ...+. ...+.+...+|+|.
T Consensus 401 dl~~g~-~~~Lt-----------~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKK-TRKIV-----------IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCC-EEEee-----------cCCCcccCceecCC
Confidence 887643 22222 12344566777764
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.56 E-value=0.0001 Score=75.28 Aligned_cols=251 Identities=11% Similarity=0.111 Sum_probs=145.0
Q ss_pred EEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeec-cCC---------ccccCeEEEEec--CCEEEEE-eCCCcEEEE
Q 019258 76 SLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDE-NSG---------FHVGPISGVDLT--GSECVSV-GEDGRVNLV 140 (343)
Q Consensus 76 ~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~-~~~---------~h~~~v~~~~~~--~~~~~s~-s~dg~v~~w 140 (343)
.+++. ++.++++-+.++.|++++........+.. ... .+...-..+.++ ++.++.+ ...+.|+.+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 45554 45677777788899999876332211111 000 011223667776 5555444 456789999
Q ss_pred ECCCCceEEEEEcCC-------C--------ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc--
Q 019258 141 SVIGGGEFKRVYDGN-------G--------LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-- 201 (343)
Q Consensus 141 d~~~~~~~~~~~~~~-------~--------~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 201 (343)
|..++. +..+.... . ......+++++ +..+++.+.+++|++||... + .+..+.+..
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~---g-~v~~~~G~G~~ 726 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD---G-VTRVFSGDGYE 726 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC---C-eEEEEecCCcc
Confidence 987762 33332110 0 01246788888 44567777799999999866 2 222222110
Q ss_pred ----CCC--CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec----------CCCCcccccCCccccE
Q 019258 202 ----GSQ--GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG----------VGTGEAVTHSLSESEV 265 (343)
Q Consensus 202 ----~~~--~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v 265 (343)
+.. ...-.....|+++|++..++++.+.+++|++||+.++......-+ .+..+.......-..-
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 000 000033567999999887888888999999999976442111100 0000000000001123
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc--------------ccccceeeecCCCCCeeEE
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE--------------PCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~--------------~~~i~s~~~~~~~~~~l~~ 330 (343)
..|++++++. .+++-+.+++|++|+..... ..+... -.....+++++ +|+.+|+
T Consensus 807 ~Gvavd~dG~----------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVa 875 (1057)
T PLN02919 807 LGVLCAKDGQ----------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVA 875 (1057)
T ss_pred ceeeEeCCCc----------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEE
Confidence 5788888876 67788889999999975332 221111 12356788888 5688888
Q ss_pred ccCCceEEEEeC
Q 019258 331 SLEWESIAIVSR 342 (343)
Q Consensus 331 ~~~~~~i~~~~~ 342 (343)
-+.+..|++|+.
T Consensus 876 Dt~Nn~Irvid~ 887 (1057)
T PLN02919 876 DTNNSLIRYLDL 887 (1057)
T ss_pred ECCCCEEEEEEC
Confidence 888899999863
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=5.2e-05 Score=69.09 Aligned_cols=221 Identities=11% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcc-c-cCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc--CCC
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH-V-GPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD--GNG 156 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~ 156 (343)
.++.++.++.+|.+..||..+++.+-........ . ....+....+..++.+..+|.+..+|.++++...+... ...
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 3567888888999999998765543222111000 0 00011112256778888899999999988753322111 000
Q ss_pred ccc---eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LVG---FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~~---v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
... ...+.-.| ++.++.++.++.+..+|..+ ++.+...... . ....... +..+ ..++.|
T Consensus 224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~~~--------~-~~~p~~~--~~~v-yv~~~~ 288 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS---GRVLWKRDAS--------S-YQGPAVD--DNRL-YVTDAD 288 (377)
T ss_pred CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC---CcEEEeeccC--------C-ccCceEe--CCEE-EEECCC
Confidence 000 11111112 56788888999999999988 6655544311 1 1122222 3344 567889
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~ 309 (343)
|.+..+|..+++....... ........... .+. .++.++.+|.|+.++... +..+.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~----------~~~~~~ssp~i--~g~----------~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDE----------LKYRQLTAPAV--VGG----------YLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CeEEEEECCCCcEEEcccc----------ccCCccccCEE--ECC----------EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 9999999988755443321 00111111112 223 688899999999998753 333333
Q ss_pred cccc-c-cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AEPC-A-INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~~~-~-i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+. . ..+-.+.+ +.|+.+++++.||.|.
T Consensus 347 ~~~~~~~~~sp~~~~---~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 347 KTDGSGIASPPVVVG---DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EcCCCccccCCEEEC---CEEEEEeCCceEEEeC
Confidence 2222 2 33434444 5688888899999873
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=0.00028 Score=62.67 Aligned_cols=252 Identities=13% Similarity=0.044 Sum_probs=134.6
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEee---------cCCCCCCceeeeeCCCCCCCCCCccCCCCC--------Ce
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY---------DTDADSPSLETHSISLPASLTPHSQWTPPT--------RI 74 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~---------D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~--------~v 74 (343)
+-.++.++.-..+ .+| +++.+..+.. +.+ .|.+||..+ .+....++.+. ..
T Consensus 40 ~g~i~~G~~P~~~-~sp----Dg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t---~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 40 LGMTDGGFLPNPV-VAS----DGSFFAHASTVYSRIARGKRTD----YVEVIDPQT---HLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEEEEccCCCcee-ECC----CCCEEEEEeccccccccCCCCC----EEEEEECcc---CcEEeEEccCCCchhhccCcc
Confidence 3444545544544 666 7766666654 322 478999955 22233333322 23
Q ss_pred eEEEcc-CCCeEEEEc-C-CCcEEEEEccCceeeeeeccCCccccCeEEE-EecCCEEEEEeCCCcEEEEECCC-CceE-
Q 019258 75 SSLSTS-HQSLVAAST-L-SGSLHVLSSAMQVLLSVDENSGFHVGPISGV-DLTGSECVSVGEDGRVNLVSVIG-GGEF- 148 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s-~-dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~s~s~dg~v~~wd~~~-~~~~- 148 (343)
..+.++ ++++|++.. . +..|.+.|+...+.+..... ..+..+ ......+..-+.||......++. ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----CCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 366667 777787766 3 68999999986554433322 111111 12233344445666655544433 2111
Q ss_pred --EEEEcCCCccceEEE-EeCC-CCEEEEEeCCCcEEEEEccccCC--CCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 149 --KRVYDGNGLVGFNCV-KWAS-PTEFVTGGFGYGLQWWDLRRAGS--GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 149 --~~~~~~~~~~~v~~~-~~~~-~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
..++..... .+..- .|.+ .+..+-.+..|+|.+-|+..... ..++..+.......+.+++.+.-++++|++..
T Consensus 183 ~~~~vf~~~~~-~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDE-YLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCcc-ccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111111000 01000 2344 33444445559999999754000 12222222211112344455666999999988
Q ss_pred EEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ec
Q 019258 223 TCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SE 292 (343)
Q Consensus 223 ~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~ 292 (343)
+++.... .+.|.++|.++.+....+. -...++.|+++|++.. .|+.. ..
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------------vG~~~~~iavS~Dgkp---------~lyvtn~~ 320 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------------LGHEIDSINVSQDAKP---------LLYALSTG 320 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------------CCCceeeEEECCCCCe---------EEEEeCCC
Confidence 8764321 2479999998855444443 2357899999999873 45544 46
Q ss_pred CCeEEEEecC
Q 019258 293 DGILAVVEQG 302 (343)
Q Consensus 293 dg~i~~~~~~ 302 (343)
++.|.++|..
T Consensus 321 s~~VsViD~~ 330 (352)
T TIGR02658 321 DKTLYIFDAE 330 (352)
T ss_pred CCcEEEEECc
Confidence 8889998864
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.47 E-value=3.1e-06 Score=73.38 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=97.2
Q ss_pred eEEEcc-CCCeEEEEcCCCcEEEEEccCcee-eeeeccCCccccCeEEEEec--CCE---EEEEeCCCcEEEEECCCCce
Q 019258 75 SSLSTS-HQSLVAASTLSGSLHVLSSAMQVL-LSVDENSGFHVGPISGVDLT--GSE---CVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~-~~~~~~~~~h~~~v~~~~~~--~~~---~~s~s~dg~v~~wd~~~~~~ 147 (343)
..+.++ .+.+++++..+....++++..... ........ -...-+++.+. ... ....++...+.+|....+ .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-R 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-C
Confidence 333444 667788888888777887763222 21111100 11122333333 222 223455556666666554 2
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
...+ -+|-+ .+++++++| +..++|+..|..|++-.... ...+..+ .+|. ..|..+++-++. .++
T Consensus 144 ~~~~-lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~-------eFVS~isl~~~~--~Ll 209 (390)
T KOG3914|consen 144 CEPI-LGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFCLGHK-------EFVSTISLTDNY--LLL 209 (390)
T ss_pred cchh-hhhhh-hhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhccccH-------hheeeeeeccCc--eee
Confidence 3333 35555 799999999 88999999999999976644 3444443 3454 789999998863 478
Q ss_pred EEecCCcEEEEEccCCcee
Q 019258 226 AGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~ 244 (343)
+|+.|+++++||++++..+
T Consensus 210 S~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCCcEEEEecccCCcc
Confidence 9999999999999997654
No 285
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.6e-05 Score=67.98 Aligned_cols=228 Identities=13% Similarity=0.119 Sum_probs=123.1
Q ss_pred cccceeeEEecCCCCCCCC-eEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSK-LAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~-~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
++..|..++++| .++ ++..+|.++. |++.|+... .+..+......+++++|. +...+.+|-.+|.
T Consensus 192 ~g~~IrdlafSp----~~~GLl~~asl~nk-----iki~dlet~---~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 192 EGSFIRDLAFSP----FNEGLLGLASLGNK-----IKIMDLETS---CVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cchhhhhhccCc----cccceeeeeccCce-----EEEEecccc---eeeeheeccCCceeeeeccCCcceeEEeccCce
Confidence 557799999999 554 7888888864 669998542 234444555899999999 6678999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--------CCEEEEEeCCCcEEEEECCCCc-eEEE--EEcCCCccceEE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--------GSECVSVGEDGRVNLVSVIGGG-EFKR--VYDGNGLVGFNC 162 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~s~s~dg~v~~wd~~~~~-~~~~--~~~~~~~~~v~~ 162 (343)
|.+||++..+..........-..+|..++.- +..++..+.+ +..|.+.-.. .... -.+..+ .+.+
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG--~cis 335 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG--ICIS 335 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc--ceee
Confidence 9999998544332111111122344444432 4444444443 4556553210 1111 112222 4667
Q ss_pred EEeCC-CCE-EEEEeCC------CcEEE-EEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 163 VKWAS-PTE-FVTGGFG------YGLQW-WDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 163 ~~~~~-~~~-l~t~~~d------~~i~i-wd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
+++++ ++. +++.-.+ ..+-. -|.+. +.++.... .+.+........-..+.-.++...++..|.+...
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d---G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD---GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeecccc---CceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 77777 333 3333221 11111 12222 33333221 1101000000111122223334566667777888
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+.+||.++.+....+. -..+|.+++....+.
T Consensus 413 lil~D~~s~evvQ~l~------------~~epv~Dicp~~~n~ 443 (463)
T KOG1645|consen 413 LILQDPHSFEVVQTLA------------LSEPVLDICPNDTNG 443 (463)
T ss_pred eEEeccchhheeeecc------------cCcceeecceeecCC
Confidence 9999999876655554 357888888875543
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=2e-06 Score=77.59 Aligned_cols=276 Identities=13% Similarity=0.100 Sum_probs=163.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC--CCCC---CCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP--ASLT---PHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~--~~~~---~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.|.++|.++.-.. +.+-|+++|.|++ +++|++..+ +... ..+...|..+|.++.|. +.+.+ ++
T Consensus 733 GH~~~iRai~Aid----NENSFiSASkDKT-----VKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~S 801 (1034)
T KOG4190|consen 733 GHQEKIRAIAAID----NENSFISASKDKT-----VKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--AS 801 (1034)
T ss_pred CcHHHhHHHHhcc----cccceeeccCCce-----EEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--ee
Confidence 4677777777666 6778999999976 559998432 2221 23345688899999998 43444 45
Q ss_pred CCCcEEEEEccCceeeeeeccCCccc--cCeEEEEec-CCEE-EEEeCCCcEEEEECCCCceEEE--EEc--CCCccceE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHV--GPISGVDLT-GSEC-VSVGEDGRVNLVSVIGGGEFKR--VYD--GNGLVGFN 161 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~~~~~~-~~~~-~s~s~dg~v~~wd~~~~~~~~~--~~~--~~~~~~v~ 161 (343)
.||-|++||--.++.+....+...|. +.|.++.-- ...+ +-|+...+|+++|.+.....-. +.. .+.. .+.
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna-~~R 880 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA-LTR 880 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch-hee
Confidence 78889999976444443333332232 344454432 3333 3457899999999987543222 221 1222 588
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE-EEcc
Q 019258 162 CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA-WDLR 239 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i-wd~~ 239 (343)
+++..+ ++.++++-..|.|.+.|.|+ +..+......++ ....++ .|..+ .++....|.++.+ |-.-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~---G~vINswrpmec-------dllqla-apsdq-~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARN---GKVINSWRPMEC-------DLLQLA-APSDQ-ALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCC---CceeccCCcccc-------hhhhhc-CchhH-HHHhhcccceeEeeehhc
Confidence 898888 88999999999999999999 776655543331 122222 24433 3456667788887 7644
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEe-ecCCCCcCCCCCccceEEEecCCeEEEEecCCCc------cccccc-
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD-CHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------FELLAE- 311 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------~~~~~~- 311 (343)
.+....... ..+...| |- .-++ -++++.....+.+|....+. ..+.++
T Consensus 949 dgimh~q~k------pppepah--------flqsvgp----------SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~ 1004 (1034)
T KOG4190|consen 949 DGIMHLQDK------PPPEPAH--------FLQSVGP----------SLVTAQNGNILGVYADSAELHAESTITKIRPDE 1004 (1034)
T ss_pred CCeeeeccC------CCCcchh--------hhhccCc----------eeEEeccCcEEEEEecchhhhhhhhhccccccc
Confidence 322211111 0001111 11 1233 46777777777777543221 112222
Q ss_pred -ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 312 -PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 312 -~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+....+++.-|=+ .-.+.|++.|.|.+.
T Consensus 1005 f~G~lTala~LPLN-~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1005 FPGTLTALAPLPLN-CAFLAGNEHGAIALL 1033 (1034)
T ss_pred cCCccceeeecccc-chhhccCCCCceeec
Confidence 3557777777733 555678888888753
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.3e-06 Score=73.62 Aligned_cols=213 Identities=11% Similarity=0.008 Sum_probs=138.5
Q ss_pred ccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CCcEEEEEC
Q 019258 66 SQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DGRVNLVSV 142 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg~v~~wd~ 142 (343)
.++-|...|+-+.....+++.+++.||+++.|.-.....+.+......|.+.+.++..+ +-.+.|.+. |..++++|+
T Consensus 4 ksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 35678888888877778999999999999999876544555565556788889888888 667778777 999999999
Q ss_pred CCCceE--EEEEcCCCccceEEEEeCCC--CEEEEE--eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 143 IGGGEF--KRVYDGNGLVGFNCVKWASP--TEFVTG--GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
++-..+ ..+...+.. + +.-..++ ..+++. -.++.+.++|-+. ...++.-++.. |..+|.++.+
T Consensus 84 En~DminmiKL~~lPg~--a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~fkkl------H~sPV~~i~y 152 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGF--A-EWVTSKGDKISLIAVSLFKSGKIFVVDGFG--DFCQDGYFKKL------HFSPVKKIRY 152 (558)
T ss_pred eccchhhhcccccCCCc--e-EEecCCCCeeeeEEeecccCCCcEEECCcC--CcCccceeccc------ccCceEEEEe
Confidence 874321 222222221 2 1112222 123333 3489999999987 33344333322 3388999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccC-CceeeeeecCCCC---cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRW-QQQSIVLSGVGTG---EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~-~~~~~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.|.+. .+++....|.|..|.... .+.|......... ...--........++.|+|++. ++.+-+.
T Consensus 153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~----------qistl~~ 221 (558)
T KOG0882|consen 153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA----------QISTLNP 221 (558)
T ss_pred ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC----------cccccCc
Confidence 99875 456788889999998762 1222221100000 0000012244567899999988 6888889
Q ss_pred CCeEEEEe
Q 019258 293 DGILAVVE 300 (343)
Q Consensus 293 dg~i~~~~ 300 (343)
|..|++..
T Consensus 222 DrkVR~F~ 229 (558)
T KOG0882|consen 222 DRKVRGFV 229 (558)
T ss_pred ccEEEEEE
Confidence 99988755
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.34 E-value=0.00055 Score=68.93 Aligned_cols=236 Identities=12% Similarity=0.004 Sum_probs=141.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCC-CCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---C
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDAD-SPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---S 91 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~-~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---d 91 (343)
..+.-..|.|.. |+.+||+.+.+...+ .-.+++|+-++.... .. -+-.+--.+++|. .++++++... .
T Consensus 208 ~dd~~~~ISWRG----DG~yFAVss~~~~~~~~R~iRVy~ReG~L~s--tS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 208 WDDGRVRISWRG----DGEYFAVSSVEPETGSRRVIRVYSREGELQS--TS-EPVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred cCCCceEEEECC----CCcEEEEEEEEcCCCceeEEEEECCCceEEe--cc-ccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 455677899999 999999999876655 456899998542111 11 1233344577887 6777777654 3
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCCCccceEEEEeCC-
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~- 167 (343)
..|..|+-+..+.-.+.-........|..+.|+ +..|+..-.|. |.+|-..+-. ...+.+.......+..+.|+|
T Consensus 281 ~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 466667655222111111111245689999999 66666655554 9999988753 222223323322456699999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee--
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS-- 244 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~-- 244 (343)
+..|...+.++.+..+++.- ....+. ...|++..++++ =+..++++-+++..--|
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~-------~v~~s~--------------~~~~~D~g~vaV-IDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAW-------DVSRSP--------------GSSPNDNGTVAV-IDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEE-------EEEecC--------------CCCccCceEEEE-EeCCeEEEecccccCCCch
Confidence 66788888778888877644 001100 011222222222 22235777777664332
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
..... -.....|.+++|++++. .++.-..||.|.+|..
T Consensus 418 Ms~~~---------l~~~~~v~~vaf~~~~~----------~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 418 MSSYE---------LELPSPVNDVAFSPSNS----------RFAVLTSDGSLSIYEW 455 (928)
T ss_pred HhceE---------EcCCCCcEEEEEeCCCC----------eEEEEECCCCEEEEEe
Confidence 22221 12467899999999876 5888899999888774
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.7e-05 Score=75.75 Aligned_cols=179 Identities=13% Similarity=0.153 Sum_probs=125.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
+..++-|+....+..+|+++.+ ..+...-... .+.-++.+ +..+.+|...|+|.+-|+++ .+.+.++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~-~v~imR~N-nr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs--- 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSAS-GVTIMRYN-NRNLFCGDTRGTVFLRDPNS---FETIHTFDAHS--- 217 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCC-ceEEEEec-CcEEEeecccceEEeecCCc---Cceeeeeeccc---
Confidence 4566777777778888988874 3333322222 46666644 45688888899999999999 88999999887
Q ss_pred CCcccCeEEEEEcCCCCeEEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 205 GKASGMIHSVDIHPSRKHTCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+.|..++.+- +++++++. |.-|++||+|..+....+. .+.++ .=+.|+|.-.
T Consensus 218 ----~siSDfDv~G---NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-----------~~~~P-~flrf~Psl~ 278 (1118)
T KOG1275|consen 218 ----GSISDFDVQG---NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-----------FPYGP-QFLRFHPSLT 278 (1118)
T ss_pred ----cceeeeeccC---CeEEEeecccccccccccchhhhhhhhhhhccCCcc-----------cccCc-hhhhhccccc
Confidence 6788777653 45566664 5568999999865433322 12222 3478899888
Q ss_pred CCcCCCCCccceEEEecCCeEEEEec---CCCc-cccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQ---GEEP-FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~---~~~~-~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .++.+|..|.....+. ...+ ...+.+ ..-+.+||+++ +|+.++-|...+.|.+|.
T Consensus 279 t---------~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 T---------RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c---------eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeec
Confidence 7 8999999999888773 2221 122222 34499999999 679999999999999985
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=0.00021 Score=67.46 Aligned_cols=256 Identities=12% Similarity=0.118 Sum_probs=155.1
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc---------
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS--------- 80 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~--------- 80 (343)
.+..-++...-+++.|+| +.++|-||.. .+-+-|. -....+..++ |...|+.+.|.
T Consensus 8 tlpG~l~~sN~~A~Dw~~-----~GLiAygshs------lV~VVDs---~s~q~iqsie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSP-----SGLIAYGSHS------LVSVVDS---RSLQLIQSIELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred cCCCCCCcccccccccCc-----cceEEEecCc------eEEEEeh---hhhhhhhccccCccceeEEEeccCCCchhcc
Confidence 444555556688999999 5577777654 2223333 1122333444 45789999997
Q ss_pred C-C---CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----C-CEEEEEeCCCcEEEEECCCCceEEE
Q 019258 81 H-Q---SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----G-SECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 81 ~-~---~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~-~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
. + -+|+++.-.|.|.+||.... ....+...|..++-.++|. . ..++.-....++.+|+..+|.+..+
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 1 1 13566666899999998732 2223334577888888886 2 5677778888999999999865544
Q ss_pred EEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccC-CCCCeeEEecccCCCC-------C-----------ccc
Q 019258 151 VYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAG-SGGPVLQFKGNFGSQG-------K-----------ASG 209 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~-------~-----------~~~ 209 (343)
.-..+. ...|+.+.| ...+..-+..|.+.+-+.-... +..+.+.+.-...+.. . ...
T Consensus 151 ~~ys~~--iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 151 YDYSHE--ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred cccCCc--ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 433343 477899988 5566666777877777653311 1112222211110000 0 000
Q ss_pred ---CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 210 ---MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 210 ---~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..-.++|+|.-+++++. .....+.++|++- ++..... ..-.+.+.=+.+-|+.+. + .
T Consensus 229 fity~a~faf~p~~rn~lfi-~~prellv~dle~-~~~l~vv----------pier~~akfv~vlP~~~r-----d---~ 288 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFI-TFPRELLVFDLEY-ECCLAVV----------PIERGGAKFVDVLPDPRR-----D---A 288 (1062)
T ss_pred HHHHHHhhhcChhhhceEEE-EeccceEEEcchh-hceeEEE----------EeccCCcceeEeccCCCc-----c---e
Confidence 01135678887777654 5567899999976 4444433 223455556777776543 1 5
Q ss_pred eEEEecCCeEEEEecCCCc
Q 019258 287 AMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~~~~ 305 (343)
|+..=.||.+.+|...+++
T Consensus 289 LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEEecCCeEEEEEeeccC
Confidence 6777899999999776544
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=3.5e-06 Score=49.31 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=30.0
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~----------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGN----------FLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSS----------EEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccc----------cceeeCCCCEEEEEC
Confidence 67999999999999977 899999999999997
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.25 E-value=0.001 Score=67.08 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=156.5
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC------CCCCeeEEEcc-CCCeEEEEcC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT------PPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~------~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
...+...+|.+. .+.-++++++... ...+.+...........+.+++ ..+.|.++.|. +...++.+..
T Consensus 21 ~~~~~~~~~d~~--sd~i~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~ 95 (928)
T PF04762_consen 21 DLPITATAFDSD--SDSIYFVLGPNEI---DYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALA 95 (928)
T ss_pred ccccceEEEecC--CCeEEEEECCCCc---ceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEEC
Confidence 346777788882 1233344443321 1223344332222122233332 34689999998 8888999999
Q ss_pred CCcEEEEEccC---ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC------------C-C-ceEE--
Q 019258 91 SGSLHVLSSAM---QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI------------G-G-GEFK-- 149 (343)
Q Consensus 91 dg~v~v~~~~~---~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~------------~-~-~~~~-- 149 (343)
+|.|.++.... ...+.+. ..-...|.+++|+ ++.++.+..++++.+.+-. . + .+..
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred CceEEEEEccCCCCCceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 99999994321 1112221 1234689999999 7778888888888775420 0 0 0000
Q ss_pred ------EEEcC------------------------CCccceEEEEeCC-CCEEEEEeC------CCcEEEEEccccCCCC
Q 019258 150 ------RVYDG------------------------NGLVGFNCVKWAS-PTEFVTGGF------GYGLQWWDLRRAGSGG 192 (343)
Q Consensus 150 ------~~~~~------------------------~~~~~v~~~~~~~-~~~l~t~~~------d~~i~iwd~~~~~~~~ 192 (343)
..+.+ .+. .-..++|-. +.+|+..+. -+.+|+|+-. +.
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd-~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----G~ 247 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD-GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----GE 247 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCC-CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----ce
Confidence 00000 111 345677877 666666654 2678999853 22
Q ss_pred CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec---CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 193 PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS---SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.-..-+... +--.+++|-|.|. ++|+.-. ...|.+|. |++-..-.+.- . .......|..|+
T Consensus 248 L~stSE~v~-------gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l-~------~~~~~~~v~~l~ 311 (928)
T PF04762_consen 248 LQSTSEPVD-------GLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTL-R------FDPEEEKVIELA 311 (928)
T ss_pred EEeccccCC-------CccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEec-C------CCCCCceeeEEE
Confidence 222222111 4455889999986 4444332 23466665 34332222210 0 012456799999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCC----ccccc-ccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE----PFELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~----~~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
|++++. .|+..-.|. |.+|-.+.- ..++. .....+..+.|||.+...|...+.++.+..+
T Consensus 312 Wn~ds~----------iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 312 WNSDSE----------ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred ECCCCC----------EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 999987 455554444 877754321 11222 2234456699999888888888876666543
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.00012 Score=69.05 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=151.8
Q ss_pred CCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--------C------CEEEEEeCCCc
Q 019258 71 PTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--------G------SECVSVGEDGR 136 (343)
Q Consensus 71 ~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~------~~~~s~s~dg~ 136 (343)
+..-.++.|+.+.+++-|+.+ .|.+-|...-+.++..+ .|+..|+.+.|. . -.++++...|.
T Consensus 15 ~sN~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHS-LVSVVDSRSLQLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred cccccccccCccceEEEecCc-eEEEEehhhhhhhhccc---cCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 334667888877777776654 57777876555554443 588999999996 1 14667778899
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEEeCC----C-CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS----P-TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
|.+||..... +...+..+.. ++..++|-+ . ..+++-....+|.+|+..+ ++...+..... ...
T Consensus 91 Iil~d~~~~s-~~~~l~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt---G~k~Wk~~ys~-------~iL 158 (1062)
T KOG1912|consen 91 IILVDFVLAS-VINWLSHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT---GEKFWKYDYSH-------EIL 158 (1062)
T ss_pred EEEEEehhhh-hhhhhcCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEccC---CceeeccccCC-------cce
Confidence 9999998874 3444444444 789999976 2 5677777899999999988 77776655443 668
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEccC---CceeeeeecCCCC--c------------ccccCCcc----ccEEEEEE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLRW---QQQSIVLSGVGTG--E------------AVTHSLSE----SEVWEVQY 270 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~~---~~~~~~~~~~~~~--~------------~~~~~~h~----~~v~~v~~ 270 (343)
.|+.++|....-+..-+..|.+.+-+.-. +..|.+..++... + ..+...-. .-...++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 88999998743333345567777776422 1222222211100 0 00000000 01134667
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccc---ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELL---AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~---~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|+-. .++...--..|+++|..-+. .-.. ....++-++--.| .-+.|.|.-.+|.+.+|.|
T Consensus 239 ~p~~r----------n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~-~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 239 SPHWR----------NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP-RRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred Chhhh----------ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC-CcceEEEEecCCeEEEEEe
Confidence 77765 35666667777887764321 1111 1234555555555 3488999999999999865
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.21 E-value=0.0034 Score=64.46 Aligned_cols=213 Identities=10% Similarity=0.090 Sum_probs=122.5
Q ss_pred eeEEEcc-CCCeEEE-EcCCCcEEEEEccCceeeeeecc-------CCc-----c-ccCeEEEEec---CCEEEEEeCCC
Q 019258 74 ISSLSTS-HQSLVAA-STLSGSLHVLSSAMQVLLSVDEN-------SGF-----H-VGPISGVDLT---GSECVSVGEDG 135 (343)
Q Consensus 74 v~~v~~~-~~~~l~~-~s~dg~v~v~~~~~~~~~~~~~~-------~~~-----h-~~~v~~~~~~---~~~~~s~s~dg 135 (343)
...+++. +++.|++ -..++.|++++........+... ..+ . ...-.++.++ +..+++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 5677777 5565444 44567888888764332111110 000 0 0112456665 55677888899
Q ss_pred cEEEEECCCCceEEEEEcC-------------CCccceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEec-
Q 019258 136 RVNLVSVIGGGEFKRVYDG-------------NGLVGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKG- 199 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~- 199 (343)
.|++||..++. ....... ........+++++ ++ .+++-+.++.|++||+.. +.. ..+.+
T Consensus 706 ~I~v~d~~~g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~-~~~~gg 780 (1057)
T PLN02919 706 QIWEYNISDGV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGS-RLLAGG 780 (1057)
T ss_pred eEEEEECCCCe-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcE-EEEEec
Confidence 99999998763 3222100 0011356788888 44 566667789999999876 221 11100
Q ss_pred ----------ccCCCCC----cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC---CcccccCCcc
Q 019258 200 ----------NFGSQGK----ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT---GEAVTHSLSE 262 (343)
Q Consensus 200 ----------~~~~~~~----~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~h~ 262 (343)
.....+. .-..-..++++|++. ++++.+.+++|++||..+.. ...+.+.+. .+.....+.-
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR-VTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-EEEEeccCCcCCCCCccccccc
Confidence 0000000 001245889999875 77888899999999987642 233322110 0000001122
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.....|++++++. .+++-+.+++|++|+...
T Consensus 859 ~~P~GIavd~dG~----------lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 859 SEPAGLALGENGR----------LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCceEEEEeCCCC----------EEEEECCCCEEEEEECCC
Confidence 3467899999876 678888999999998754
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.0021 Score=58.91 Aligned_cols=223 Identities=14% Similarity=0.074 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcc--ccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcC-C-C
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH--VGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDG-N-G 156 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~-~-~ 156 (343)
.++.+++++.+|.+..+|..+++.+-........ .....+-...+..++.++.+|.+...|..+++...+.... . .
T Consensus 159 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 159 SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 3567888888999999998866544222111000 0000111112456777788899999999887532221100 0 0
Q ss_pred cc---ceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LV---GFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~---~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
.. ....+...| .+.++.++.++.+..+|..+ ++.+.+.... . ...+... +..+ ..++.+
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t---G~~~W~~~~~--------~-~~~~~~~--~~~v-y~~~~~ 303 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS---GQIVWKREYG--------S-VNDFAVD--GGRI-YLVDQN 303 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC---CCEEEeecCC--------C-ccCcEEE--CCEE-EEEcCC
Confidence 00 011112233 56777788899999999988 6655443211 1 1122222 2344 457789
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
|.+..+|..+++........ .+ ......... +. .++.++.||.|+.++.... ..+..
T Consensus 304 g~l~ald~~tG~~~W~~~~~---------~~-~~~~sp~v~--~g----------~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDL---------LH-RLLTAPVLY--NG----------YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CeEEEEECCCCcEEEccccc---------CC-CcccCCEEE--CC----------EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999887554432200 00 111111122 23 6888999999999887543 22222
Q ss_pred cc-cccc-ceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 310 AE-PCAI-NSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 310 ~~-~~~i-~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.- ...+ .+-.+.. ..|+.+++++.++.+++|
T Consensus 362 ~~~~~~~~s~P~~~~---~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 362 KVDSSGFLSEPVVAD---DKLLIQARDGTVYAITRP 394 (394)
T ss_pred EcCCCcceeCCEEEC---CEEEEEeCCceEEEEeCC
Confidence 11 1222 2223343 578888899999999987
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.0001 Score=67.64 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=78.8
Q ss_pred CccCCCCCCeeEEEcc--CCCeEEEE----cCCCcE----EEEEccCc--eeeeeeccCCccccCeEEEEec--CCEEEE
Q 019258 65 HSQWTPPTRISSLSTS--HQSLVAAS----TLSGSL----HVLSSAMQ--VLLSVDENSGFHVGPISGVDLT--GSECVS 130 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~--~~~~l~~~----s~dg~v----~v~~~~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s 130 (343)
++...-+....++.|+ .+..+.+- +.+|.+ .+|++..+ +.+.+... .....|.+++++ .+.++.
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi--pL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI--PLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE--ecCCcceEEecCcccceEEE
Confidence 3444445556777787 44444443 224432 45665533 22222222 366788899988 889999
Q ss_pred EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 131 VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
|+.||+|.+||...+. ..... .. ...+.++|+| +..++.|+..|.+.+||..-
T Consensus 277 GC~DgSiiLyD~~~~~--t~~~k-a~-~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGV--TLLAK-AE-FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCCeEEEEEcCCCe--eeeee-ec-ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999997763 22222 22 2588999999 88899999999999999865
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.5e-05 Score=69.30 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=76.0
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
|++.+..+-+ ...+...+.. .|.+++|+| ..++..++.+++|+|.|+++ ...+..+..+ .++.++
T Consensus 175 v~~l~~~~fk-ssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet---~~~vssy~a~--------~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFK-SSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLET---SCVVSSYIAY--------NQIWSC 241 (463)
T ss_pred eEEeccCCcc-hhhcccccch-hhhhhccCccccceeeeeccCceEEEEeccc---ceeeeheecc--------CCceee
Confidence 5555544432 2333334444 799999999 44789999999999999998 5555555544 569999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+|+-+..+.+.+|-.+|.|.+||+|.++.+...+
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 9999999999999999999999999988776654
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.001 Score=60.03 Aligned_cols=273 Identities=7% Similarity=-0.007 Sum_probs=149.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC---
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG--- 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg--- 92 (343)
..-.+..++|+| .+.+|++.... -+.+|.-+... .+..+.| ..|..+.|+ .+.+|.+-+..+
T Consensus 31 ~~~p~~~~~~SP----~G~~l~~~~~~------~V~~~~g~~~~---~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 31 ENWPVAYVSESP----LGTYLFSEHAA------GVECWGGPSKA---KLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred cCcchhheeecC----cchheehhhcc------ceEEccccchh---heeeeec-CCceecccCcccceeeeeccCCccC
Confidence 445688899999 78888765433 26688875432 2333333 468888888 777777765544
Q ss_pred ------------cEEEEEccCceeeeeeccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCCceEEEE-EcCCC
Q 019258 93 ------------SLHVLSSAMQVLLSVDENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV-YDGNG 156 (343)
Q Consensus 93 ------------~v~v~~~~~~~~~~~~~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~-~~~~~ 156 (343)
.+.+||...+.-+........ ..... -+.|+ +.+.+-. -...+.++++ ++. .... +..-.
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n-~~~~p~~~lr 172 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN-IEEHPFKNLR 172 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec-CCc-cccCchhhcc
Confidence 388999875543322221111 10122 34444 4444433 2235889986 321 1111 01111
Q ss_pred ccceEEEEeCCC---CEEEE-----EeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 157 LVGFNCVKWASP---TEFVT-----GGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 157 ~~~v~~~~~~~~---~~l~t-----~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
...+...+|+|. ..|+. .+....+++|.+.. ...+.+ ++. ..-..+.|++.|..+++-
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk---------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFK---------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEe---------ecccEEEEecCCceEEEE
Confidence 125888888882 22232 35578888888865 444443 332 224567888888765432
Q ss_pred Ee----------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 227 GG----------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 227 g~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
.- .+..+++++++....+... .-.++|.+.+|.|++.. + .+++|-.+..+
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~------------~~~~pVhdf~W~p~S~~-------F-~vi~g~~pa~~ 300 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK------------DLKDPVHDFTWEPLSSR-------F-AVISGYMPASV 300 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec------------cccccceeeeecccCCc-------e-eEEecccccce
Confidence 11 1345788888765544442 24789999999998773 1 23333455566
Q ss_pred EEEecCCCcccccccccccceeeecCCCCCeeEE-ccCC--ceEEEEe
Q 019258 297 AVVEQGEEPFELLAEPCAINSFDIDPQNPSDVIC-SLEW--ESIAIVS 341 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~-~~~~--~~i~~~~ 341 (343)
-+++..... ..+.-..+=|.+-++|. +.+++. |-++ +.|.+|.
T Consensus 301 s~~~lr~Nl-~~~~Pe~~rNT~~fsp~-~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 301 SVFDLRGNL-RFYFPEQKRNTIFFSPH-ERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred eecccccce-EEecCCcccccccccCc-ccEEEEecCCccccceEEec
Confidence 666654432 22222344555666663 344443 2222 4555554
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.14 E-value=0.0048 Score=55.40 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=107.7
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC-cEEEEEccCceeeeeec
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG-SLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg-~v~v~~~~~~~~~~~~~ 109 (343)
.+++++++.|..+ .-+.+..+ ...-.+++.+.|.-..+. +++.++.|..|| .+-||+....+.-.+.
T Consensus 330 ~~Gd~ia~VSRGk------aFi~~~~~----~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e- 398 (668)
T COG4946 330 VNGDYIALVSRGK------AFIMRPWD----GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE- 398 (668)
T ss_pred CCCcEEEEEecCc------EEEECCCC----CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-
Confidence 3567777777642 11222211 113356777888777777 777899999999 8999999855422222
Q ss_pred cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC----CCcEEE
Q 019258 110 NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF----GYGLQW 182 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~----d~~i~i 182 (343)
..-+.|.++..+ |+.++.+-....+-+.|++++. +...-..... -|+.+.|+| +..++-+-- ...|++
T Consensus 399 ---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 399 ---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 345688999888 6778888888889999999984 4444333333 799999999 544544432 556899
Q ss_pred EEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 183 WDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+|... ..+....... +.=.+-+|.|+++++.
T Consensus 474 ydm~~----~Kiy~vTT~t-------a~DfsPaFD~d~ryLY 504 (668)
T COG4946 474 YDMDG----GKIYDVTTPT-------AYDFSPAFDPDGRYLY 504 (668)
T ss_pred EecCC----CeEEEecCCc-------ccccCcccCCCCcEEE
Confidence 99866 3444433222 3334557788877654
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.12 E-value=1.4e-05 Score=46.64 Aligned_cols=36 Identities=19% Similarity=0.512 Sum_probs=31.6
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd 184 (343)
+...+..|.. .|.+++|+| +..|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 4556677766 899999999 89999999999999998
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=0.0028 Score=57.90 Aligned_cols=273 Identities=9% Similarity=0.017 Sum_probs=144.2
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---------
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL--------- 90 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~--------- 90 (343)
-+-++|+| .|.+|+|=-.- | |.+|.=+. ...+..+.|+ .|.-+.|+ .+.+|++-+.
T Consensus 213 etyv~wSP----~GTYL~t~Hk~---G---I~lWGG~~---f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 213 ETYVRWSP----KGTYLVTFHKQ---G---IALWGGES---FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeeEEecC----CceEEEEEecc---c---eeeecCcc---HHHHHhccCC-CceeeecCCccceEEEecCCccccCccc
Confidence 45689999 89999875322 2 66886533 3334455665 46778888 7788888764
Q ss_pred --CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 91 --SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 91 --dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
...+.|||+.++...............---+.|+ +++++.-..+ +|.+++...- .+.... .-.-.+|...+|+
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~K-slki~gIr~Fsws 355 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKK-SLKISGIRDFSWS 355 (698)
T ss_pred CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeeccc-ccCCccccCcccC
Confidence 2578999998665443222211111111123455 7777766665 5999987653 121111 1112268888999
Q ss_pred C-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE---------EecCC
Q 019258 167 S-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA---------GGSSG 231 (343)
Q Consensus 167 ~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s---------g~~dg 231 (343)
| ++.|+.=.- -..+.+-.+.+ .+.+.+...+. -.=..+-|-.+|.++.+- ++.=-
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCc---cceeeecccee-------eeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 9 443332111 11122222222 11111100000 001122333334333211 11122
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC--eEEEEec--CCCccc
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG--ILAVVEQ--GEEPFE 307 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--~i~~~~~--~~~~~~ 307 (343)
.+.|+-+|...-|+... .-...|...+|-|.+.. +.+-.+.+. ++..+.. ......
T Consensus 426 n~eIfrireKdIpve~v-----------elke~vi~FaWEP~gdk---------F~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVV-----------ELKESVIAFAWEPHGDK---------FAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred eEEEEEeeccCCCceee-----------ecchheeeeeeccCCCe---------EEEEEccccccceeEEEeecCCCchh
Confidence 46677788776676665 23578999999999874 333333333 4555543 222223
Q ss_pred cccc--ccccceeeecCCCCCeeEEccC---CceEEEEe
Q 019258 308 LLAE--PCAINSFDIDPQNPSDVICSLE---WESIAIVS 341 (343)
Q Consensus 308 ~~~~--~~~i~s~~~~~~~~~~l~~~~~---~~~i~~~~ 341 (343)
+... ....|.+-|+| .|++|+.++- .+.+++++
T Consensus 486 lVk~~dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSP-KGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hhhhhcccccceEEEcC-CCcEEEEEEecccccceEEEe
Confidence 3332 25689999999 6788887653 35555553
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.0046 Score=52.69 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=125.0
Q ss_pred EEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 76 SLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 76 ~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
+..|. ++.++++-...+.|..|+........ ... ....++.+. +..++.+..++ +.++|..+++ ...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-----~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~-~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-----PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGK-VTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-----SSEEEEEEECTTSEEEEEETTC-EEEEETTTTE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-----CCCceEEEEccCCEEEEEEcCc-eEEEecCCCc-EEEE
Confidence 45565 45666666678889888887544322 211 114555555 67777777666 5555988873 4333
Q ss_pred EcC---C-CccceEEEEeCC-CCEEEEEeCC--------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 152 YDG---N-GLVGFNCVKWAS-PTEFVTGGFG--------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 152 ~~~---~-~~~~v~~~~~~~-~~~l~t~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
... . .......+++.+ ++..++.... +.|..++.. ..+..+...- ...+.++|+|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~~~~~~~~~-------~~pNGi~~s~ 143 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GKVTVVADGL-------GFPNGIAFSP 143 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SEEEEEEEEE-------SSEEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----CeEEEEecCc-------ccccceEECC
Confidence 322 1 334688999999 6666655543 335555543 2222222111 4578999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCce----eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQ----SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
++..++++-+..+.|..+|+..... +..+... ..-.+..-.+++..++. ..++.-..+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~g~pDG~~vD~~G~----------l~va~~~~~ 205 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF--------PGGPGYPDGLAVDSDGN----------LWVADWGGG 205 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---------SSSSCEEEEEEEBTTS-----------EEEEEETTT
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEc--------CCCCcCCCcceEcCCCC----------EEEEEcCCC
Confidence 9988888888899999999864332 1112100 11123467899988776 455556788
Q ss_pred eEEEEecCCCcccccccc-cccceeeecC
Q 019258 295 ILAVVEQGEEPFELLAEP-CAINSFDIDP 322 (343)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~-~~i~s~~~~~ 322 (343)
.|.+++...+....+.-+ ..+.+++|.+
T Consensus 206 ~I~~~~p~G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEETTSCEEEEEE-SSSSEEEEEEES
T ss_pred EEEEECCCccEEEEEcCCCCCEEEEEEEC
Confidence 999999876555544444 4577777753
No 303
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.10 E-value=8.4e-07 Score=81.30 Aligned_cols=210 Identities=12% Similarity=0.044 Sum_probs=128.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcC---
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTL--- 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~--- 90 (343)
...+.+.+++|.-.. +...++.|+.++. |-+-.+..+..-.-...-++....++++|. +.+.|++|-.
T Consensus 54 sdtqy~kcva~~y~~--d~cIlavG~atG~-----I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGN--DRCILAVGSATGN-----ISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred ccCCCceeehhhcCC--chhhhhhccccCc-----eEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhc
Confidence 344667888888721 3367778887754 225555322211123334566789999999 7788888853
Q ss_pred -CCcEEEEEccCc--eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 91 -SGSLHVLSSAMQ--VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 91 -dg~v~v~~~~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|..+.|||+... .+.....+...--....+++|. .+.+++|.....+.++|++... .... .-... .+..+..
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~-svnTk-~vqG~tV 203 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVS-SVNTK-YVQGITV 203 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhh-hhhhh-hccccee
Confidence 778999999743 1111111111122345577777 5667778888899999998642 1111 11111 3666677
Q ss_pred CC-CCEEEEEeCCCcEEEEE-ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-cCCcEEEEEccC
Q 019258 166 AS-PTEFVTGGFGYGLQWWD-LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-SSGTVFAWDLRW 240 (343)
Q Consensus 166 ~~-~~~l~t~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~dg~v~iwd~~~ 240 (343)
.| ....++...|+.|.+|| .+. ...++..+..... .....+..++|.|....++++.. +.++|+++|++.
T Consensus 204 dp~~~nY~cs~~dg~iAiwD~~rn--ienpl~~i~~~~N---~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNSDGDIAIWDTYRN--IENPLQIILRNEN---KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccccCceeeccchhh--hccHHHHHhhCCC---CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77 33344455699999999 555 3344444332221 11145999999998877777665 467899999865
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.09 E-value=0.0041 Score=52.34 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=65.2
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccC---CccccCeEEEEec--------CCEEEEEeCCCcEEEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENS---GFHVGPISGVDLT--------GSECVSVGEDGRVNLV 140 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~---~~h~~~v~~~~~~--------~~~~~s~s~dg~v~~w 140 (343)
+=..++|+ +..+||.+.+.|+|++||+...+...+.... ..-...|.++.|. ...++.-..+|.++-+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45689999 8899999999999999999754433222211 1112456667665 2367777888888877
Q ss_pred ECCCC--c---eEEE-EEcCCCccceEEEEeCC-CCEEEEEeC
Q 019258 141 SVIGG--G---EFKR-VYDGNGLVGFNCVKWAS-PTEFVTGGF 176 (343)
Q Consensus 141 d~~~~--~---~~~~-~~~~~~~~~v~~~~~~~-~~~l~t~~~ 176 (343)
-+..+ + .... .+..+....|.++.|+| .++|+.||.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 65321 1 1111 11223233699999999 566666654
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00089 Score=64.06 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=120.1
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCc-----EEEEEccccCC
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYG-----LQWWDLRRAGS 190 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~-----i~iwd~~~~~~ 190 (343)
.+.+++-++..++.|+.+|.|.+.+-.- +..+-+......-+..+.... .+.|++.+.|++ |++||+..-.+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6777776688999999999988776332 232333333331233333333 467888888665 99999986222
Q ss_pred CC-C--ee--EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE--c-cCCceeeeeecCCCCcccccCCcc
Q 019258 191 GG-P--VL--QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD--L-RWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 191 ~~-~--~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd--~-~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
.. | +. .+..+. ....+.++.+++.+.+- ..+|+|..||.|..+- + |.......+. ..-.
T Consensus 105 n~sP~c~~~~ri~~~~--np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~----------~~~~ 171 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIK--NPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYS----------HRGK 171 (933)
T ss_pred CCCcceeeeeeeeccC--CCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeee----------ccCC
Confidence 23 2 21 122211 12234789999999874 5678999999999994 2 3222223333 3347
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccc-ccccccceeeecCCCCCeeEEccCCceEEE
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELL-AEPCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.+|+++.+.-++.. ++.+..-..|.++...... ..++ .+..++++-.+++.. ..++|++ .+.+++
T Consensus 172 ~pITgL~~~~d~~s----------~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~f 239 (933)
T KOG2114|consen 172 EPITGLALRSDGKS----------VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYF 239 (933)
T ss_pred CCceeeEEecCCce----------eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEE
Confidence 89999999877663 2444444445555433222 3323 346788888888743 4467776 447888
Q ss_pred EeC
Q 019258 340 VSR 342 (343)
Q Consensus 340 ~~~ 342 (343)
|..
T Consensus 240 Y~s 242 (933)
T KOG2114|consen 240 YDS 242 (933)
T ss_pred EcC
Confidence 764
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=8.9e-05 Score=65.62 Aligned_cols=199 Identities=16% Similarity=0.050 Sum_probs=131.9
Q ss_pred ccccCeEEEEec-CCEEEEEeCCCcEEEEECCC--CceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccc
Q 019258 113 FHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG--GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~ 187 (343)
.|...|+.+... .+.+.+++.||.++.|.-.. +......+..|-. .+.+++-+. +-++.|.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEeec
Confidence 488888888888 99999999999999998654 2223333333333 466666566 666777777 99999999987
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v 265 (343)
..-+..++...- ++.+..+ .+|.. ..+.++..++|.+.++|-+...++.... ...|..+|
T Consensus 86 ---~DminmiKL~~l-----Pg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---------kklH~sPV 147 (558)
T KOG0882|consen 86 ---FDMINMIKLVDL-----PGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---------KKLHFSPV 147 (558)
T ss_pred ---cchhhhcccccC-----CCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---------cccccCce
Confidence 333322322110 0222222 12221 2344555679999999988766555544 16799999
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC------C--ccccccc---------ccccceeeecCCCCCee
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE------E--PFELLAE---------PCAINSFDIDPQNPSDV 328 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~------~--~~~~~~~---------~~~i~s~~~~~~~~~~l 328 (343)
..+.+++.+. .++|....|.|..|.... . ..++.++ ..-..++.++| ++..+
T Consensus 148 ~~i~y~qa~D----------s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qi 216 (558)
T KOG0882|consen 148 KKIRYNQAGD----------SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQI 216 (558)
T ss_pred EEEEeecccc----------ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcc
Confidence 9999999887 477878889999998653 1 1121121 13478999999 56777
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
..-++|..|+++.
T Consensus 217 stl~~DrkVR~F~ 229 (558)
T KOG0882|consen 217 STLNPDRKVRGFV 229 (558)
T ss_pred cccCcccEEEEEE
Confidence 7777888888763
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.00076 Score=62.08 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=56.1
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
.+.+.+++| ...++.|+.||.|.+||... + +..+.... -..+.++|||+|. ++++|++.|.+.+||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~--~t~~~ka~-------~~P~~iaWHp~ga-i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTR---G--VTLLAKAE-------FIPTLIAWHPDGA-IFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCC---C--eeeeeeec-------ccceEEEEcCCCc-EEEEEcCCceEEEEE
Confidence 699999999 88999999999999999866 2 22322221 4478899999985 678899999999999
Q ss_pred ccCC
Q 019258 238 LRWQ 241 (343)
Q Consensus 238 ~~~~ 241 (343)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 8654
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.0038 Score=56.45 Aligned_cols=280 Identities=13% Similarity=0.061 Sum_probs=150.9
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCC---C-------CCCceeeeeCCCCCCCCCCccCCCCCCee-EEEcc
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTD---A-------DSPSLETHSISLPASLTPHSQWTPPTRIS-SLSTS 80 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~---~-------~~~~l~~w~~~~~~~~~~~~~~~~~~~v~-~v~~~ 80 (343)
+.+++|. .|.-+.++| .+.+|+|=+...- . ++-.+.+||...............+.-.. -+.|+
T Consensus 66 l~~~~~~-~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s 140 (561)
T COG5354 66 LVRFRHP-DVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS 140 (561)
T ss_pred eeeeecC-CceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeee
Confidence 3444443 366677777 8888888775432 0 11135688875432111111112221233 56677
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEE-----EEeCCCcEEEEECCCCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECV-----SVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~-----s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
-.+.+++--....++|+++... +........-...+..+.++ +..|+ ..+.++++++|.+..++.....
T Consensus 141 ~~D~y~ARvv~~sl~i~e~t~n--~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 141 IDDKYVARVVGSSLYIHEITDN--IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred ecchhhhhhccCeEEEEecCCc--cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 2333333335567999997421 11111111112356777776 22333 2467888999998765422221
Q ss_pred EcCCCccceEEEEeCC-CCEEEEE--e---------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTG--G---------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~--~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
.-..- .=..+.|++ +..++.- . ....+.|++++. ..-++. .... ++|+..+|.|.
T Consensus 219 ~lfk~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~--~~~~-------~pVhdf~W~p~ 285 (561)
T COG5354 219 NLFKV--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVE--KDLK-------DPVHDFTWEPL 285 (561)
T ss_pred eeEee--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--ccccee--cccc-------ccceeeeeccc
Confidence 11111 123466766 4433211 1 125577777765 111211 1212 88999999998
Q ss_pred CCeE-EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---Ce
Q 019258 220 RKHT-CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GI 295 (343)
Q Consensus 220 ~~~~-~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~ 295 (343)
+... +++|-.+-.+.++|++.. . .... -++.=+.+.|+|... +++.++-| |.
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N-l-~~~~------------Pe~~rNT~~fsp~~r----------~il~agF~nl~gn 341 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN-L-RFYF------------PEQKRNTIFFSPHER----------YILFAGFDNLQGN 341 (561)
T ss_pred CCceeEEecccccceeecccccc-e-EEec------------CCcccccccccCccc----------EEEEecCCccccc
Confidence 7543 445567889999999874 2 2221 245556788999887 67776665 46
Q ss_pred EEEEecCCCcccc-cccccccceeeecCCCCCeeEEccCCce
Q 019258 296 LAVVEQGEEPFEL-LAEPCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 296 i~~~~~~~~~~~~-~~~~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
+-+|+....-... ........-.+|+| +++++....+.++
T Consensus 342 i~i~~~~~rf~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k 382 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEK 382 (561)
T ss_pred eEEeccCCceEEEEEeecCCceEeeccC-CceEEEecCCCcc
Confidence 8888875543322 22234455668888 5677777665544
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00054 Score=65.00 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 019258 70 PPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 70 ~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
....++|++++ +..|+.|+-+|.|++++......... .|... ...|++++|||.||+|.+-.+-+.+ -.
T Consensus 38 ~~D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~~~~~-----~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-~~ 106 (846)
T KOG2066|consen 38 QNDAISCCAVH-DKFFALGTHRGAVYLTTCQGNPKTNF-----DHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-EI 106 (846)
T ss_pred hhhHHHHHHhh-cceeeeccccceEEEEecCCcccccc-----ccccc----ccCCceEEEecCCCcEEEeeccCCc-cc
Confidence 34557777776 78999999999999998873211111 23222 2239999999999999999887764 33
Q ss_pred EEEcCCCccceEEEEeCC------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 150 RVYDGNGLVGFNCVKWAS------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
..+..+. ++.+++++| ...+++||..| +.++.-+- .+.. .....+.+ . ++|+++.|.- ++
T Consensus 107 ~~~df~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w--lgnk-~~v~l~~~-e----G~I~~i~W~g---~l 172 (846)
T KOG2066|consen 107 TQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW--LGNK-DSVVLSEG-E----GPIHSIKWRG---NL 172 (846)
T ss_pred eeEecCC--cceeEEeccchhhhhhhheeecCcce-EEEehhhh--hcCc-cceeeecC-c----cceEEEEecC---cE
Confidence 3344444 588899887 46799999988 88876554 1221 12222221 1 8999999975 35
Q ss_pred EEEEecCCcEEEEEccCCc
Q 019258 224 CLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~ 242 (343)
+|=++++ -|++||....+
T Consensus 173 IAWand~-Gv~vyd~~~~~ 190 (846)
T KOG2066|consen 173 IAWANDD-GVKVYDTPTRQ 190 (846)
T ss_pred EEEecCC-CcEEEeccccc
Confidence 5555554 58999987643
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.01 Score=50.01 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=119.2
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
+|.|..||..+++.+-.........+.+......++.+++++.++.|..||..+++...+.......... .....+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccc
Confidence 5778888886655543332211122222222224788888899999999999998644444322221111 1122667
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
++.++.++.|..+|.++ ++.+.+. ......... .......+. +. .++.+..++.|..+|+++++.......
T Consensus 79 v~v~~~~~~l~~~d~~t---G~~~W~~~~~~~~~~~~--~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKT---GKVLWSIYLTSSPPAGV--RSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEEETTSEEEEEETTT---SCEEEEEEE-SSCTCST--B--SEEEEE--TT-EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred cccccceeeeEecccCC---cceeeeecccccccccc--ccccCceEe--cC-EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 77787889999999888 7777773 322110101 112223333 33 345677799999999999876655542
Q ss_pred CCCCcccccCCc-ccc------E-EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccce-ee
Q 019258 250 VGTGEAVTHSLS-ESE------V-WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINS-FD 319 (343)
Q Consensus 250 ~~~~~~~~~~~h-~~~------v-~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s-~~ 319 (343)
. ... ... + ..+.+. +. .++.++.+|.+..++..... .+... ...+.+ +.
T Consensus 151 -~-------~~~~~~~~~~~~~~~~~~~~~--~~----------~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~ 209 (238)
T PF13360_consen 151 -G-------EPRGSSPISSFSDINGSPVIS--DG----------RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPS 209 (238)
T ss_dssp -S-------TT-SS--EEEETTEEEEEECC--TT----------EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEE
T ss_pred -C-------CCCCCcceeeecccccceEEE--CC----------EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCce
Confidence 1 000 011 1 122222 12 46777777764444654332 22111 223333 44
Q ss_pred ecCCCCCeeEEccCCceEEEEeC
Q 019258 320 IDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 320 ~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+ +..|++++.++.+++++.
T Consensus 210 ~~---~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 210 VD---GGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp CC---CTEEEEEETTTEEEEEET
T ss_pred ee---CCEEEEEeCCCEEEEEEC
Confidence 44 378888888899999874
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.01 Score=54.79 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=107.4
Q ss_pred ceeeEEecCCCCCCCCe-EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEE-EcCC--CcE
Q 019258 20 YIDAVRWLPPLSPLSKL-AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAA-STLS--GSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~-l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~-~s~d--g~v 94 (343)
.+..-+|+| +++. ++..++++. ...|+++++.... ...+. ..++......|+ ++..|+. .+.+ ..|
T Consensus 189 ~~~~p~wSp----DG~~~i~y~s~~~~--~~~Iyv~dl~tg~-~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWAN----KEQTAFYYTSYGER--KPTLYKYNLYTGK-KEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECC----CCCcEEEEEEccCC--CCEEEEEECCCCc-EEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 566789999 7764 666666631 2357888885432 22222 345566677898 7765544 4434 456
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.++++...+...+.. +.+......|+ |+.++-.+ ..+ .|.+.|+.++. ..++...... ...|+| +
T Consensus 260 y~~dl~~g~~~~LT~----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~~----~~~~SPDG 330 (419)
T PRK04043 260 YLYDTNTKTLTQITN----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGKN----NSSVSTYK 330 (419)
T ss_pred EEEECCCCcEEEccc----CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCCc----CceECCCC
Confidence 666765443322221 22222334576 76666555 333 57777887764 4444322211 237899 6
Q ss_pred CEEEEEeCC---------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEE
Q 019258 169 TEFVTGGFG---------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWD 237 (343)
Q Consensus 169 ~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd 237 (343)
..++..... ..|.+.|+.. + ....+... +......|+|+|..++.+....+. +.+.+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~---g-~~~~LT~~--------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNS---D-YIRRLTAN--------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCC---C-CeEECCCC--------CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 666666543 2577778766 3 33444322 122357899999887776555444 55556
Q ss_pred ccC
Q 019258 238 LRW 240 (343)
Q Consensus 238 ~~~ 240 (343)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 543
No 312
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.85 E-value=0.0047 Score=55.50 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC-cEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG-RVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg-~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
++++++..|. |...|.+...+..+++ +|.+.|.-..+. ++.++.|..|| .+-++|.+++ .+.+....-.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e~kr~e~~lg- 402 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-EVKRIEKDLG- 402 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-eEEEeeCCcc-
Confidence 6777776654 4566666554444433 366677777666 77889999999 8999999998 4666655554
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec----CCc
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS----SGT 232 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~----dg~ 232 (343)
.|.+++.++ +..++.+.....|.+.|+.+ +. +..+..... +.|..++|||+++++ |-+-- -..
T Consensus 403 -~I~av~vs~dGK~~vvaNdr~el~vididn---gn-v~~idkS~~------~lItdf~~~~nsr~i-AYafP~gy~tq~ 470 (668)
T COG4946 403 -NIEAVKVSPDGKKVVVANDRFELWVIDIDN---GN-VRLIDKSEY------GLITDFDWHPNSRWI-AYAFPEGYYTQS 470 (668)
T ss_pred -ceEEEEEcCCCcEEEEEcCceEEEEEEecC---CC-eeEeccccc------ceeEEEEEcCCceeE-EEecCcceeeee
Confidence 599999999 67788888888999999988 33 333332221 779999999998765 44444 446
Q ss_pred EEEEEccCC
Q 019258 233 VFAWDLRWQ 241 (343)
Q Consensus 233 v~iwd~~~~ 241 (343)
|+++|+...
T Consensus 471 Iklydm~~~ 479 (668)
T COG4946 471 IKLYDMDGG 479 (668)
T ss_pred EEEEecCCC
Confidence 999999863
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0024 Score=61.18 Aligned_cols=117 Identities=22% Similarity=0.314 Sum_probs=85.7
Q ss_pred cCCcccceeeE-EecCCCCCCCCeEEEEeecCC-CCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 14 RFPQSKYIDAV-RWLPPLSPLSKLAVLAIYDTD-ADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 14 ~~~~~~~i~~v-~w~p~~~~~~~~l~t~s~D~~-~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
.|+..+.++++ .|+| ..++|+.++.-.+ .+ ++.|+--.+ ++......+-.+++++|+ ..-.|+.|-.
T Consensus 10 E~~Dsdavsti~SWHP----sePlfAVA~fS~er~G--SVtIfadtG----EPqr~Vt~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHP----SEPLFAVASFSPERGG--SVTIFADTG----EPQRDVTYPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ecccccccccccccCC----CCceeEEEEecCCCCc--eEEEEecCC----CCCcccccceehhhhccChHHHHHhhccc
Confidence 34555555554 8999 7889999987654 23 344554332 234455666778899999 5556778888
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
-|.+.+|..+..+.-.+.. .|..+|..++|+ |..++++..-|.|.+|..+
T Consensus 80 ~g~~~v~~~~~~e~htv~~---th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVE---THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeecc---CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999987544333332 599999999999 9999999999999999875
No 314
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.022 Score=52.56 Aligned_cols=178 Identities=8% Similarity=0.002 Sum_probs=103.0
Q ss_pred CeEEEEec--CCE-EEEEeC---CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCC--CcEEEEEcc
Q 019258 117 PISGVDLT--GSE-CVSVGE---DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFG--YGLQWWDLR 186 (343)
Q Consensus 117 ~v~~~~~~--~~~-~~s~s~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d--~~i~iwd~~ 186 (343)
......|+ ++. ++..+. +..|.++|+.+++ ...+..... ......|+| +..++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKIASSQG--MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEEecCCC--cEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56778888 653 554443 3468888998874 555544333 356678999 54444 44434 567777875
Q ss_pred ccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCcccc
Q 019258 187 RAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
. + ....+.... +......|+|+|..++++....| .|++.|+..++...... .+.
T Consensus 266 ~---g-~~~~LT~~~-------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~----------~g~--- 321 (419)
T PRK04043 266 T---K-TLTQITNYP-------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF----------HGK--- 321 (419)
T ss_pred C---C-cEEEcccCC-------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc----------CCC---
Confidence 5 3 344444322 22234579999988877765555 57777886643322111 111
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEe-cC--------CeEEEEecCCCcccccccccccceeeecCCCCCeeEEccC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCS-ED--------GILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s-~d--------g~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
....|+|++.. ++..+ .. ..|++.+........+.......+..|+| +|+.|+....
T Consensus 322 -~~~~~SPDG~~----------Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SP-DG~~I~f~~~ 387 (419)
T PRK04043 322 -NNSSVSTYKNY----------IVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSS-DGGSIMFIKY 387 (419)
T ss_pred -cCceECCCCCE----------EEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECC-CCCEEEEEEc
Confidence 12489999884 44443 32 25788776544334444433445688999 5676666553
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.75 E-value=0.0041 Score=45.00 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=64.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.+.|+.|+.|..|++|+-+. ....+.+ .+ .+.++.......|+.+-.+|+|-+|+-. ..+...+..
T Consensus 15 ~~eLlvGs~D~~IRvf~~~e--~~~Ei~e-~~--~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-----~RlWRiKSK---- 80 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGDE--IVAEITE-TD--KVTSLCSLGGGRFAYALANGTVGVYDRS-----QRLWRIKSK---- 80 (111)
T ss_pred cceEEEecCCcEEEEEeCCc--EEEEEec-cc--ceEEEEEcCCCEEEEEecCCEEEEEeCc-----ceeeeeccC----
Confidence 37899999999999999664 2344433 33 4888888788889999999999999853 334445432
Q ss_pred CCcccCeEEEEE---cCCCCeEEEEEecCCcEE
Q 019258 205 GKASGMIHSVDI---HPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 205 ~~~~~~i~~v~~---~p~~~~~~~sg~~dg~v~ 234 (343)
..+.++++ .-+|..-+++|-.+|.|-
T Consensus 81 ----~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 ----NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22445443 334445678999999874
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0089 Score=57.53 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=110.6
Q ss_pred EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCC-eeEEEccCC-CeEEEEcCCC-----cEEE
Q 019258 25 RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTR-ISSLSTSHQ-SLVAASTLSG-----SLHV 96 (343)
Q Consensus 25 ~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~-v~~v~~~~~-~~l~~~s~dg-----~v~v 96 (343)
+|++ .+..+|.|+.|+. +|-++..- .....++ ++.. |.-+.-.++ .+|++-+.|+ .+++
T Consensus 30 c~~s----~~~~vvigt~~G~-------V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 30 CCSS----STGSVVIGTADGR-------VVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred EEcC----CCceEEEeecccc-------EEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEE
Confidence 4566 7788899998865 55553221 1111111 2222 333322233 5676666554 5899
Q ss_pred EEccCc---e---ee---eeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC--CCceEEEEEcCCCccceEE
Q 019258 97 LSSAMQ---V---LL---SVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI--GGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 97 ~~~~~~---~---~~---~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~--~~~~~~~~~~~~~~~~v~~ 162 (343)
|+++.. + .+ .+.. .......++.+++++ -+.++.|-.+|.|..+.-+ ..+-.+..+......+|+.
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 999721 1 11 1111 111134578888887 6778888899999988542 2212233344444448999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+.+.. +..++-+.....|.+|.+.. ..|......+.+ ..++|..+++..+.++.++ +..+.+||...
T Consensus 177 L~~~~d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G------~~lnCss~~~~t~qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 177 LALRSDGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNG------ISLNCSSFSDGTYQFICAG--SEFLYFYDSDG 244 (933)
T ss_pred eEEecCCceeEEEEecceeEEEEecC---CCcceeeeccCC------ccceeeecCCCCccEEEec--CceEEEEcCCC
Confidence 99877 44434444567889999876 223333232322 6799999998655454333 34799998764
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.72 E-value=0.015 Score=53.36 Aligned_cols=224 Identities=10% Similarity=-0.005 Sum_probs=120.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
.++.++.++.+|.+..+|..+++.+=.... .+.+.+ ....+..++.+..++.+..+|..+++..-+.........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV----AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC----CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 467788888999999999876554321111 112211 122366777788899999999999864433322111000
Q ss_pred eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC--CCCeEEEEEecCCcEE
Q 019258 160 FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP--SRKHTCLAGGSSGTVF 234 (343)
Q Consensus 160 v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~~~sg~~dg~v~ 234 (343)
... .-.| .+.++.++.++.+...|..+ ++...+.................+...| .+..+ ..++.+|.+.
T Consensus 195 ~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~---G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v-y~~~~~g~l~ 269 (394)
T PRK11138 195 LRG-ESAPATAFGGAIVGGDNGRVSAVLMEQ---GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV-YALAYNGNLV 269 (394)
T ss_pred ccC-CCCCEEECCEEEEEcCCCEEEEEEccC---ChhhheeccccCCCccchhcccccCCCcEEECCEE-EEEEcCCeEE
Confidence 000 0122 45677788899999999887 6655443311100000000011111122 12334 4567889999
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc--
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE-- 311 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~-- 311 (343)
.+|.++++...... .. ....+.. .+. .++.++.+|.|+.++.... ..+....
T Consensus 270 ald~~tG~~~W~~~----------~~---~~~~~~~--~~~----------~vy~~~~~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 270 ALDLRSGQIVWKRE----------YG---SVNDFAV--DGG----------RIYLVDQNDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred EEECCCCCEEEeec----------CC---CccCcEE--ECC----------EEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence 99998876554432 11 1111222 223 5777888999888876432 2221111
Q ss_pred ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 ~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.....+-.+.+ ..|+.++.++.+++++
T Consensus 325 ~~~~~sp~v~~---g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 325 HRLLTAPVLYN---GYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCcccCCEEEC---CEEEEEeCCCEEEEEE
Confidence 11233333443 5677777788888765
No 318
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0018 Score=46.87 Aligned_cols=101 Identities=9% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
++|.-+|.+-|++|++|..|++|+-.. ...... -.+.|..++-...+ .++.+-++
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~------------e~~~v~~L~~~~~~-----------~F~Y~l~N 62 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT------------ETDKVTSLCSLGGG-----------RFAYALAN 62 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe------------cccceEEEEEcCCC-----------EEEEEecC
Confidence 345556667788999999999997542 222222 34678788777653 68999999
Q ss_pred CeEEEEecCCCccccccc--ccccceeeecCCCCCeeEEccCCceEEE
Q 019258 294 GILAVVEQGEEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 294 g~i~~~~~~~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
|+|-+++.....-...+. +.++..+|++.+.-..||+|=.+|+|.+
T Consensus 63 GTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 63 GTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CEEEEEeCcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 999998875544322232 3457777887766678999999998864
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=7.1e-05 Score=71.54 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=103.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC-cEEEEECC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG-RVNLVSVI 143 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg-~v~~wd~~ 143 (343)
.+....+|++|+ +.++|++|+..|.|++|++..+... ...+.|..+|+.+..+ |...++.+ ... ...+|++.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 355678999999 8899999999999999999855432 2234699999999988 66555444 333 46799987
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
.--.++..+. .-.+++|+. ...-+.|.......+||+.+ +.++.++. .....+ ..-+++.|+|...
T Consensus 1176 s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT---~~~l~tylt~~~~~~----y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQT---CSPLQTYLTDTVTSS----YSNNLAHFSPCDT 1243 (1516)
T ss_pred cccCcccccc-----ccceeehhhhHHHHHhcccccceEEEeccc---CcHHHHhcCcchhhh----hhccccccCCCcc
Confidence 6323333332 356788877 22333344557788999998 77776633 211111 3347888999875
Q ss_pred eEEEEEecCCcEEEEEccCCce
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
.++ .|| .+||.|.++.
T Consensus 1244 LIl----ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1244 LIL----NDG--VLWDVRIPEA 1259 (1516)
T ss_pred eEe----eCc--eeeeeccHHH
Confidence 433 456 4799988643
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.55 E-value=0.028 Score=49.99 Aligned_cols=147 Identities=9% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCeEEEEcC----------CCcEEEEEccCc----eeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 019258 82 QSLVAASTL----------SGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 82 ~~~l~~~s~----------dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
..+|++|+. .|.|.+|++.+. ..+..... ....++|+++...++.++.+. .+.|.+|++...+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc
Confidence 466777764 289999999863 23333222 135789999988855555444 47799999988652
Q ss_pred EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.......+....+.++... .+.++.|...+.+.++.... ....+..+.... ...+++++.+-+++. .++.+
T Consensus 120 l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~--~~~~l~~va~d~-----~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDE--ENNKLILVARDY-----QPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEET--TTE-EEEEEEES-----S-BEEEEEEEE-SSS-EEEEE
T ss_pred chhhheecceEEEEEEecc-ccEEEEEEcccCEEEEEEEc--cCCEEEEEEecC-----CCccEEEEEEecCCc-EEEEE
Confidence 3333222222246666544 56899999999999886554 223333332111 115588888886664 66788
Q ss_pred ecCCcEEEEEcc
Q 019258 228 GSSGTVFAWDLR 239 (343)
Q Consensus 228 ~~dg~v~iwd~~ 239 (343)
..+|.+.++...
T Consensus 191 D~~gnl~~l~~~ 202 (321)
T PF03178_consen 191 DKDGNLFVLRYN 202 (321)
T ss_dssp ETTSEEEEEEE-
T ss_pred cCCCeEEEEEEC
Confidence 999999999775
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.52 E-value=0.044 Score=46.33 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=117.8
Q ss_pred CCeEEEEcCCCcEEEEEccCc-eee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC--
Q 019258 82 QSLVAASTLSGSLHVLSSAMQ-VLL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-- 155 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~-~~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-- 155 (343)
...+++.-.|..|.|-...++ ..+ .-....+.-...=..++|+ +..++.+...|+|+++|+... ....+-...
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCccccc
Confidence 344455556666666554422 111 0011111111234678888 677888889999999999753 222221111
Q ss_pred ---CccceEEEEeCC-------CCEEEEEeCCCcEEEEEccc--cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 156 ---GLVGFNCVKWAS-------PTEFVTGGFGYGLQWWDLRR--AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 156 ---~~~~v~~~~~~~-------~~~l~t~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
-...|-.+.|.. ...|+.-.++|.++-|-+.. .+..+....|.....-. ..|.++.++|..+-+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp----~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP----HGINSAVYHPKHRLL 162 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC----CceeEEEEcCCCCEE
Confidence 112466666644 33688888999999887632 01122333333211101 459999999987666
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE------E
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL------A 297 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i------~ 297 (343)
++.|++...-..+ ++-...+.+=..-.+.+. +..++.++|+.. .
T Consensus 163 lVgG~~~~~~~~s----------------------~a~~~GLtaWRiL~~~Py--------yk~v~~~~~~~~~~~~~~~ 212 (282)
T PF15492_consen 163 LVGGCEQNQDGMS----------------------KASSCGLTAWRILSDSPY--------YKQVTSSEDDITASSKRRG 212 (282)
T ss_pred EEeccCCCCCccc----------------------cccccCceEEEEcCCCCc--------EEEccccCccccccccccc
Confidence 6555554321010 111222322222222232 011222222211 1
Q ss_pred EEecC-CCcccc-cccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 298 VVEQG-EEPFEL-LAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 298 ~~~~~-~~~~~~-~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+|+.. ...... ..+...|..|.++| +|..|+|-.-+|.|.+|.-|
T Consensus 213 ~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 213 LLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred eeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecC
Confidence 12211 001111 12345799999999 67999999999999999876
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0024 Score=60.78 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=93.3
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 160 v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
++|.+++ ...|+-|+.+|.|++.+... .+ .+...+. . . +..|.+ +++|+.||+|.|-.+-
T Consensus 42 is~~av~-~~~~~~GtH~g~v~~~~~~~----~~-~~~~~~s-------~-~-----~~~Gey-~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 42 ISCCAVH-DKFFALGTHRGAVYLTTCQG----NP-KTNFDHS-------S-S-----ILEGEY-VASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHhh-cceeeeccccceEEEEecCC----cc-ccccccc-------c-c-----ccCCce-EEEecCCCcEEEeecc
Confidence 4555544 45688899999999998743 44 3333332 1 1 445654 6899999999999887
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec----CCCccccccccccc
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ----GEEPFELLAEPCAI 315 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~----~~~~~~~~~~~~~i 315 (343)
+.+....+- ..-++..|+++|+-.. ..+. ++++|+.-| +.+.+. ......+....++|
T Consensus 102 ~~~~~~~~d------------f~rpiksial~Pd~~~--~~sk---~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 102 TDDEITQYD------------FKRPIKSIALHPDFSR--QQSK---QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred CCccceeEe------------cCCcceeEEeccchhh--hhhh---heeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 755433332 4578999999998110 0111 689999999 666543 22233344446899
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.++.|.+ .+++-++|. .|.|+..
T Consensus 164 ~~i~W~g---~lIAWand~-Gv~vyd~ 186 (846)
T KOG2066|consen 164 HSIKWRG---NLIAWANDD-GVKVYDT 186 (846)
T ss_pred EEEEecC---cEEEEecCC-CcEEEec
Confidence 9999997 688888766 5666654
No 323
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.41 E-value=0.087 Score=47.09 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=119.8
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEE-EEe---------CCCcEEEEECCCCceEEEEEcCCC-----
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECV-SVG---------EDGRVNLVSVIGGGEFKRVYDGNG----- 156 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-s~s---------~dg~v~~wd~~~~~~~~~~~~~~~----- 156 (343)
+.|.+.|....+.+.....- ..+-..++-.++.++ +.+ .+..|.+||+.+.+...++..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999998866555433321 112122333355555 445 588999999999865544432221
Q ss_pred ccceEEEEeCC-CCEEEEEe-C-CCcEEEEEccccCCCCCeeEEecccC----------------CCCCcc--------c
Q 019258 157 LVGFNCVKWAS-PTEFVTGG-F-GYGLQWWDLRRAGSGGPVLQFKGNFG----------------SQGKAS--------G 209 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~----------------~~~~~~--------~ 209 (343)
...-..+.+++ ++.++... . +..|.+.|+.. .+.+.++....+ +..... .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCC---CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 11234677788 55555554 3 78999999877 444433221110 000000 0
Q ss_pred CeEEEE--------------EcC-CCCeEEEEEecCCcEEEEEccCC----ceeeeeecCCCCcccccCCccccEEEEEE
Q 019258 210 MIHSVD--------------IHP-SRKHTCLAGGSSGTVFAWDLRWQ----QQSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 210 ~i~~v~--------------~~p-~~~~~~~sg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
.+.... +.+ ++..+++ ..+ |+|.+.|+... ..+......... ...-..+.+.-+++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v-s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWP-TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGWRPGGWQQVAY 255 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEE-ecC-CeEEEEecCCCcceecceeeecccccc---ccccCCCcceeEEE
Confidence 111111 122 5555543 333 99999996432 222222210000 00012333445999
Q ss_pred eecCCCCcCCCCCccceEEEe----------cCCeEEEEecCCC-cccccccccccceeeecCCCCC-eeEEcc-CCceE
Q 019258 271 DCHTKSSNISSSRVLPAMFCS----------EDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPS-DVICSL-EWESI 337 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s----------~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~-~l~~~~-~~~~i 337 (343)
+|++.. ++... ..++|+++|.... ....+.-...+.++.++++ ++ .|.... .++.|
T Consensus 256 ~~dg~~----------lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D-gkp~lyvtn~~s~~V 324 (352)
T TIGR02658 256 HRARDR----------IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD-AKPLLYALSTGDKTL 324 (352)
T ss_pred cCCCCE----------EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC-CCeEEEEeCCCCCcE
Confidence 998873 44321 2247889887532 2232333567899999994 56 666555 45667
Q ss_pred EEEe
Q 019258 338 AIVS 341 (343)
Q Consensus 338 ~~~~ 341 (343)
.+++
T Consensus 325 sViD 328 (352)
T TIGR02658 325 YIFD 328 (352)
T ss_pred EEEE
Confidence 7764
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.40 E-value=0.025 Score=50.36 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=120.7
Q ss_pred ccCCcccceeeEEecCCCC---CCCCeEEEEeecC--C---CCCCceeeeeCCCC----CCCCCCccCCCCCCeeEEEcc
Q 019258 13 HRFPQSKYIDAVRWLPPLS---PLSKLAVLAIYDT--D---ADSPSLETHSISLP----ASLTPHSQWTPPTRISSLSTS 80 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~---~~~~~l~t~s~D~--~---~~~~~l~~w~~~~~----~~~~~~~~~~~~~~v~~v~~~ 80 (343)
..++..+.+.+++-..-.. ...++++.|+.=. + ...-+|.++++.+. ...+.+.....+++|++++-.
T Consensus 18 ~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 18 FELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE
T ss_pred EECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh
Confidence 3445566666665444211 1357788776411 1 11125778888652 234555666778999999987
Q ss_pred CCCeEEEEcCCCcEEEEEccCce-eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEEcCCCcc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIG-GGEFKRVYDGNGLV 158 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~~~~~~ 158 (343)
.+ .|+++ .++.|.+|++...+ ........ ....++++...++.++.|.....+.++..+. ......+-......
T Consensus 98 ~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 98 NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred CC-EEEEe-ecCEEEEEEccCcccchhhheec--ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence 44 44444 45789999998655 23222221 2237888888888999999888888875543 21233332222233
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEcccc----CCCC-CeeE-EecccCCCCCcccCeEEE---EEcC--CCC-----
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRA----GSGG-PVLQ-FKGNFGSQGKASGMIHSV---DIHP--SRK----- 221 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~----~~~~-~~~~-~~~~~~~~~~~~~~i~~v---~~~p--~~~----- 221 (343)
.++++.+.+ .+.++.+..+|.+.++..... ..+. .+.. ..-+-+ ..|+++ .+.| .+.
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg------~~v~~~~~~~l~~~~~~~~~~~~ 247 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG------DIVNSFRRGSLIPRSGSSESPNR 247 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S------S-EEEEEE--SS--SSSS-TTEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC------CccceEEEEEeeecCCCCccccc
Confidence 688888874 558999999999999877520 0011 2222 222222 557777 5555 222
Q ss_pred eEEEEEecCCcEEEE
Q 019258 222 HTCLAGGSSGTVFAW 236 (343)
Q Consensus 222 ~~~~sg~~dg~v~iw 236 (343)
..++-++.+|.|...
T Consensus 248 ~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 248 PQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEETTS-EEEE
T ss_pred ceEEEEecCCEEEEE
Confidence 235678889998843
No 325
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.33 E-value=0.081 Score=45.00 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=121.8
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~ 100 (343)
..+.|.+ .++.++.+-...+ +|..|+..... ...+..++ ...+.+. .+..|+.+..++ +.++|..
T Consensus 3 Egp~~d~---~~g~l~~~D~~~~-----~i~~~~~~~~~----~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 3 EGPVWDP---RDGRLYWVDIPGG-----RIYRVDPDTGE----VEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEEET---TTTEEEEEETTTT-----EEEEEETTTTE----EEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETT
T ss_pred cceEEEC---CCCEEEEEEcCCC-----EEEEEECCCCe----EEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecC
Confidence 3567887 4566666643332 34455553321 11122333 6677776 567777776655 4556877
Q ss_pred CceeeeeeccC-Cc-cccCeEEEEec--CCEEEEEeCC--------CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 101 MQVLLSVDENS-GF-HVGPISGVDLT--GSECVSVGED--------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 101 ~~~~~~~~~~~-~~-h~~~v~~~~~~--~~~~~s~s~d--------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
..+...+.... .. .....+.+.+. |...++.... |.|..++.. + ........-. ....++|++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~~~~--~pNGi~~s~d 144 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVADGLG--FPNGIAFSPD 144 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEEEES--SEEEEEEETT
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEecCcc--cccceEECCc
Confidence 54333222221 11 34467888888 7766766544 456777766 4 3444443322 478999999
Q ss_pred CCEE-EEEeCCCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 168 PTEF-VTGGFGYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 168 ~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
++.| ++-+..+.|..+|+.. ....+.. +....... +..-.++++.+| ++.++....+.|.++|.+ ++.
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDA--DGGELSNRRVFIDFPGGP----GYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEET--TTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCE
T ss_pred chheeecccccceeEEEeccc--cccceeeeeeEEEcCCCC----cCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccE
Confidence 5544 5667789899999875 2332322 21111100 247789999987 466777788999999987 443
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEe
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
...+. .. ...+.+++|-
T Consensus 217 ~~~i~----------~p-~~~~t~~~fg 233 (246)
T PF08450_consen 217 LREIE----------LP-VPRPTNCAFG 233 (246)
T ss_dssp EEEEE-----------S-SSSEEEEEEE
T ss_pred EEEEc----------CC-CCCEEEEEEE
Confidence 33332 22 3478888884
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.006 Score=59.65 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=84.2
Q ss_pred eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC----C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCC
Q 019258 132 GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA----S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG 205 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 205 (343)
.....|.-.|+++++ ++..+..+...+|..+.-. . +...+.|-.++.|..||.|. .+..+..-..+....
T Consensus 501 ~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~--~~~k~v~~~~k~Y~~- 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL--SGNKLVDSQSKQYSS- 576 (794)
T ss_pred CCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCC--CCCceeecccccccc-
Confidence 456789999999995 7777776765445655432 1 34567788899999999998 333333211111101
Q ss_pred CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 206 KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
.....|++-..+| .+|.|+.+|.|++|| +.+......+ .+-..+|..|..+.++..
T Consensus 577 --~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~AKT~l----------p~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 577 --KNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRAKTAL----------PGLGDPIIGIDVTADGKW 632 (794)
T ss_pred --CCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhhhhcC----------CCCCCCeeEEEecCCCcE
Confidence 1447788877766 368999999999999 3333333333 456789999999999884
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.25 E-value=0.094 Score=44.10 Aligned_cols=190 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCC-Cccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-GLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-~~~~ 159 (343)
.++.+++++.++.+..||..+++.+-........... ....+..++.+..++.+..+|..+++...+..... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 5678888899999999998766544322221111112 23337778888888999999999986555532222 1101
Q ss_pred -eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc---ccCe-EEEEEcCCCCeEEEEEecCCcE
Q 019258 160 -FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA---SGMI-HSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 160 -v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~i-~~v~~~p~~~~~~~sg~~dg~v 233 (343)
........ ++.++.+..++.|..+|+++ ++.+............+ ...+ ..+.+. ++ .++ .++.+|.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~ 185 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKT---GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRV 185 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTT---TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEE-EECCTSSE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCC---CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEE-EEcCCCeE
Confidence 11112111 67788888899999999998 77777766532110000 0011 233333 33 444 55667754
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.-+|+++++... .. . ...+..+ ...++. .++.++.++.|..||...
T Consensus 186 ~~~d~~tg~~~w-~~----------~--~~~~~~~-~~~~~~----------~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 186 VAVDLATGEKLW-SK----------P--ISGIYSL-PSVDGG----------TLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEETTTTEEEE-EE----------C--SS-ECEC-EECCCT----------EEEEEETTTEEEEEETTT
T ss_pred EEEECCCCCEEE-Ee----------c--CCCccCC-ceeeCC----------EEEEEeCCCEEEEEECCC
Confidence 444999876443 22 1 1222221 233444 577777899999999753
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.18 E-value=0.075 Score=53.43 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=116.1
Q ss_pred cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEc----ccc
Q 019258 116 GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDL----RRA 188 (343)
Q Consensus 116 ~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~----~~~ 188 (343)
..|.++++. ...++.+..+|.|.+-|..+. .......-+. +|.+++|+| ...++-.+.+.++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~-GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~- 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDN-GISAASWSPDEELLALITGRQTLLFMTKDFEPIA- 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccC-ceEEEeecCCCcEEEEEeCCcEEEEEeccccchh-
Confidence 589999998 788888899999999988775 2333333333 799999999 777777777777766332 11
Q ss_pred CCCCCe-------------------eEEecccCCC-----CC---------cccCeEEEEEcCCCCeEEEEEe----cC-
Q 019258 189 GSGGPV-------------------LQFKGNFGSQ-----GK---------ASGMIHSVDIHPSRKHTCLAGG----SS- 230 (343)
Q Consensus 189 ~~~~~~-------------------~~~~~~~~~~-----~~---------~~~~i~~v~~~p~~~~~~~sg~----~d- 230 (343)
.+++ .+|.+..+.+ .. ....=.+|.|--+|.+ ||+.. .+
T Consensus 145 --E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 --EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGT 221 (1265)
T ss_pred --ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCc
Confidence 1111 1232222100 00 0012335888887764 44411 23
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE---ecCCeEEEEecCCCccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC---SEDGILAVVEQGEEPFE 307 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~---s~dg~i~~~~~~~~~~~ 307 (343)
+.|++||-. +. ..... ..-.+.-.+++|-|.+. .+++- ++|+.|..++.+.....
T Consensus 222 RkirV~drE-g~-Lns~s----------e~~~~l~~~LsWkPsgs----------~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 222 RKIRVYDRE-GA-LNSTS----------EPVEGLQHSLSWKPSGS----------LIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eeEEEeccc-ch-hhccc----------CcccccccceeecCCCC----------eEeeeeecCCCCcEEEEecCCcccc
Confidence 789999965 21 11111 22233345799999766 45543 45667888887543221
Q ss_pred -----ccccccccceeeecCCCCCeeEE---ccCCceEEEEe
Q 019258 308 -----LLAEPCAINSFDIDPQNPSDVIC---SLEWESIAIVS 341 (343)
Q Consensus 308 -----~~~~~~~i~s~~~~~~~~~~l~~---~~~~~~i~~~~ 341 (343)
...+..++..+.|+. +++.|+. ......|++|+
T Consensus 280 ~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEE
Confidence 111124499999997 4466665 55666799886
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.13 E-value=0.13 Score=51.71 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=109.2
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
++.|.++.+.. +.+-++.+..+++ +-+-+..+. .++.. -.-...|.+++|+ ++..++..+..+++.+
T Consensus 68 d~~i~s~~fl~----d~~~i~v~~~~G~-----iilvd~et~-~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFLA----DTNSICVITALGD-----IILVDPETL-ELEIV--GNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEec----ccceEEEEecCCc-----EEEEccccc-ceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 35777888877 4444555555544 223333221 11111 1234679999999 8899998888888876
Q ss_pred EEcc----Cceee-----------ee--------eccCCc---------cc---------cCeEEEEec--CCEEEEEe-
Q 019258 97 LSSA----MQVLL-----------SV--------DENSGF---------HV---------GPISGVDLT--GSECVSVG- 132 (343)
Q Consensus 97 ~~~~----~~~~~-----------~~--------~~~~~~---------h~---------~~v~~~~~~--~~~~~s~s- 132 (343)
-... ..+.+ .+ .+...+ |. ..=+.+.|- |++|+...
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 6541 00011 00 000000 00 011347787 66776632
Q ss_pred ---CC-CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe---CCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 133 ---ED-GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG---FGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 133 ---~d-g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.+ ..+++||-+ + .....-..... .-.+++|-| +..+++-. .|+.|.+|.-. +..-..|.......
T Consensus 216 ~~~~~~RkirV~drE-g-~Lns~se~~~~-l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN----GL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-G-ALNSTSEPVEG-LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN----GLRHGEFVLPFPLD 288 (1265)
T ss_pred eccCCceeEEEeccc-c-hhhcccCcccc-cccceeecCCCCeEeeeeecCCCCcEEEEecC----CccccccccCCccc
Confidence 33 789999977 3 23333222222 456889999 55555543 36678888642 22111222111111
Q ss_pred CCcccCeEEEEEcCCCCeEEEE---EecCCcEEEEEccCC
Q 019258 205 GKASGMIHSVDIHPSRKHTCLA---GGSSGTVFAWDLRWQ 241 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~s---g~~dg~v~iwd~~~~ 241 (343)
..++..++|+.++. +++. ..+...|++|-+.+-
T Consensus 289 ---e~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 289 ---EKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ---ccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 14489999998865 5555 445555999988663
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0039 Score=57.92 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=69.6
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE-EEEEcCCCCeEEEEEecCCcEEEE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH-SVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.+.-+.|+| -..++++..+|.|.+.-+.- +.+.++.-+. ..++ +++|.|+|. ++|.|-.||+|++-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~----qRlwtip~p~-------~~v~~sL~W~~DGk-llaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW----QRLWTIPIPG-------ENVTASLCWRPDGK-LLAVGFKDGTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc----ceeEeccCCC-------CccceeeeecCCCC-EEEEEecCCeEEEE
Confidence 588999999 88999999999999887644 5556665333 3344 999999974 77999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
|..++....... -.-+..|..+.|.|
T Consensus 90 Dve~~~~l~~~~----------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFL----------FSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccc----------cccccchheeeccc
Confidence 999876554432 12356777888864
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.31 Score=46.38 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=86.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce---eeeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV---LLSVD 108 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~---~~~~~ 108 (343)
..++++.|+.-+. |.+++-......+..... -.+.+..+..+ .+.+.++|+..|.|.++.++... .+.+.
T Consensus 44 t~~~l~~GsS~G~-----lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 44 TEEYLAMGSSAGS-----VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred CCceEEEecccce-----EEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 5677888775543 557766443222111111 22333344444 67888899999999999987422 22333
Q ss_pred ccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc----eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEE
Q 019258 109 ENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG----EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQW 182 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~i 182 (343)
+....|...|+++.|+ +..+.+|...|+|.+-.++... ....+.. -++ .|-.+.+.....|++... +. .+
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds-~IVQlD~~q~~LLVStl~-r~-~L 193 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDS-EIVQLDYLQSYLLVSTLT-RC-IL 193 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCc-ceEEeecccceehHhhhh-hh-he
Confidence 3444578899999999 8899999999999988776611 1122222 222 577777665544444433 32 34
Q ss_pred EEccc
Q 019258 183 WDLRR 187 (343)
Q Consensus 183 wd~~~ 187 (343)
++.+.
T Consensus 194 c~tE~ 198 (726)
T KOG3621|consen 194 CQTEA 198 (726)
T ss_pred eecch
Confidence 55544
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.0086 Score=56.37 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=92.6
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
..+|++ .....++.|++-|.+.+|.-.. .....++... ..+.+..+..+++. +++|+|+..|.|.++-+
T Consensus 37 ~lTc~d-st~~~l~~GsS~G~lyl~~R~~----~~~~~~~~~~-----~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 37 KLTCVD-ATEEYLAMGSSAGSVYLYNRHT----GEMRKLKNEG-----ATGITCVRSVSSVE-YLVAAGTASGRVSVFQL 105 (726)
T ss_pred EEEEee-cCCceEEEecccceEEEEecCc----hhhhcccccC-----ccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence 345554 2267899999999999998644 3333333211 11556677778875 67889999999999987
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC------Ccccccccc
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE------EPFELLAEP 312 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~------~~~~~~~~~ 312 (343)
.. +.|..+.-+.. .+..|...|++++|++++- .+++|-.-|.|-.-+.+. ...+++..+
T Consensus 106 ~~-~~p~~~~~~t~----~d~~~~~rVTal~Ws~~~~----------k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 106 NK-ELPRDLDYVTP----CDKSHKCRVTALEWSKNGM----------KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hc-cCCCcceeecc----ccccCCceEEEEEeccccc----------EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 66 33332221111 1134788999999999987 799999999986654432 234566667
Q ss_pred cccceeeecC
Q 019258 313 CAINSFDIDP 322 (343)
Q Consensus 313 ~~i~s~~~~~ 322 (343)
.+|-.+|...
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 8888898875
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.89 E-value=0.35 Score=44.57 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=94.8
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeecc---CCccccCeEEEEecCC
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDEN---SGFHVGPISGVDLTGS 126 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~ 126 (343)
.|++++..+.... ...+.. +.|.++.|.+...|+.-..||.+++|++.......+... .......+....+.+.
T Consensus 62 ~I~iys~sG~ll~--~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGKLLS--SIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCCEeE--EEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 4788888654322 122334 799999999777788888999999999863221111110 0011122222222212
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEEcCCCc-------cceEE-EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 127 ECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGL-------VGFNC-VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~-------~~v~~-~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
-++.-..++.+.+-.--... .......-... ..... ..+.. ....+....++.+.+-+-.. .++
T Consensus 139 GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~---~~~--- 212 (410)
T PF04841_consen 139 GIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS---FKQ--- 212 (410)
T ss_pred CEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc---ccc---
Confidence 23333334444433221111 11111110100 00111 11122 23334444445555333222 111
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+. .. +++..++++|+++.+ |.-..+|.+.+.+..-.+....+. ..-.....+|.|+.++.
T Consensus 213 i~-~~-------~~i~~iavSpng~~i-Al~t~~g~l~v~ssDf~~~~~e~~----------~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ID-SD-------GPIIKIAVSPNGKFI-ALFTDSGNLWVVSSDFSEKLCEFD----------TDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cc-CC-------CCeEEEEECCCCCEE-EEEECCCCEEEEECcccceeEEee----------cCcCCCCcEEEEECCCc
Confidence 11 11 679999999998754 666788999888754332222222 12234566888886543
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.85 E-value=0.36 Score=44.11 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=119.8
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceee----------------------------------------eeeccC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLL----------------------------------------SVDENS 111 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~----------------------------------------~~~~~~ 111 (343)
.|+.+.|. +..-|++|..+|.|-||+...++.. ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888 6677999999999999987521110 000001
Q ss_pred CccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE-cC-----CCccceEEEEeCC---------CCEEEEEe
Q 019258 112 GFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY-DG-----NGLVGFNCVKWAS---------PTEFVTGG 175 (343)
Q Consensus 112 ~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~-----~~~~~v~~~~~~~---------~~~l~t~~ 175 (343)
....++|++++.+ -..++.|..+|.+.+.|++.+..+.... .. ...+.+++++|.- .-.++.|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 1235789999998 7788899999999999998764322211 11 2234688888852 34688999
Q ss_pred CCCcEEEEEccccCCCCCeeEEeccc-CCCCCcccCeEEEE-EcCC--------------------CCeEEEEEecCCcE
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNF-GSQGKASGMIHSVD-IHPS--------------------RKHTCLAGGSSGTV 233 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~-~~p~--------------------~~~~~~sg~~dg~v 233 (343)
..|.+.+|.+.-...+.-...+.... ... ++|..+. ++.+ .+.+++ ...+..+
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~----~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~i 237 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHD----SPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDI 237 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS--------EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEE
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCC----CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccce
Confidence 99999999886200111111222111 111 4444444 2111 112333 3456789
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee----cCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC----HTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL 309 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p----~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~ 309 (343)
+++..-+.....+.. . ..-....+.+-+ .... .|+.-..+|.++++....-. ++.
T Consensus 238 rv~~~~~~k~~~K~~----------~-~~~~~~~~~vv~~~~~~~~~---------~Lv~l~~~G~i~i~SLP~Lk-ei~ 296 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF----------D-DPFLCSSASVVPTISRNGGY---------CLVCLFNNGSIRIYSLPSLK-EIK 296 (395)
T ss_dssp EEE-TT---EEEEE-----------S-S-EEEEEEEEEEEE-EEEEE---------EEEEEETTSEEEEEETTT---EEE
T ss_pred EEEeCCCCcccceee----------c-cccccceEEEEeecccCCce---------EEEEEECCCcEEEEECCCch-Hhh
Confidence 999887654433333 1 112223334421 1222 57777999999998875421 111
Q ss_pred c-------cccccceeeecCCCCCeeEEccCCc
Q 019258 310 A-------EPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 310 ~-------~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
. +...+....+.+ +|+.+.-.+..+
T Consensus 297 ~~~l~~~~d~~~~~~ssis~-~Gdi~~~~gpsE 328 (395)
T PF08596_consen 297 SVSLPPPLDSRRLSSSSISR-NGDIFYWTGPSE 328 (395)
T ss_dssp EEE-SS---HHHHTT-EE-T-TS-EEEE-SSSE
T ss_pred cccCCCccccccccccEECC-CCCEEEEeCccc
Confidence 1 112345556665 567766666554
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.84 E-value=0.045 Score=53.76 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=91.1
Q ss_pred CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-------CCEEEEEeCCCcEEEEECCCCc-eEEEE
Q 019258 81 HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-------GSECVSVGEDGRVNLVSVIGGG-EFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~-~~~~~ 151 (343)
+..+|+.-- ....++-.|+..+.-+ .+|......+|..+.-. ....+.|-.+..+..||.+-.. .+...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV--~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVV--EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEE--EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 334444433 3466777777755433 34432333457777653 4456677778889999997632 22211
Q ss_pred --EcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 152 --YDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 152 --~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
..........|++-...+.++.|+.+|.||+||- . +..-++ +.+.. .||..|+...+|.++++|+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~---g~~AKT~lp~lG-------~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-L---GKRAKTALPGLG-------DPIIGIDVTADGKWILATC- 637 (794)
T ss_pred cccccccCCCceEEEecCCceEEEEeCCCcEEeecc-c---chhhhhcCCCCC-------CCeeEEEecCCCcEEEEee-
Confidence 1111223578887667889999999999999993 3 332223 43333 8899999999999988764
Q ss_pred cCCcEEEEEc
Q 019258 229 SSGTVFAWDL 238 (343)
Q Consensus 229 ~dg~v~iwd~ 238 (343)
+..+.++|.
T Consensus 638 -~tyLlLi~t 646 (794)
T PF08553_consen 638 -KTYLLLIDT 646 (794)
T ss_pred -cceEEEEEE
Confidence 457778875
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.81 E-value=0.16 Score=47.14 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=86.4
Q ss_pred eEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEE-EccccCCCCCee
Q 019258 118 ISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWW-DLRRAGSGGPVL 195 (343)
Q Consensus 118 v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iw-d~~~~~~~~~~~ 195 (343)
...++++ ...++..+.||.-.++.....+ .... + .-....|.+.+.+++-...++|+++ ++.. ....
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~r-~k~~--G----~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~----~~~k 103 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWR-NKAF--G----SGLSFVWSSRNRYAVLESSSTIKIYKNFKN----EVVK 103 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTTE-EEEE--E----E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-----TT-
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCCc-cccc--C----ceeEEEEecCccEEEEECCCeEEEEEcCcc----ccce
Confidence 4667777 4455555778888888844332 2211 1 2446678887788888889999996 4433 3323
Q ss_pred EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+... ..+..+- + |.- +... .++.|.+||..+......+. ..+|..|.|++++.
T Consensus 104 ~i~~~--------~~~~~If--~-G~L-L~~~-~~~~i~~yDw~~~~~i~~i~-------------v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 104 SIKLP--------FSVEKIF--G-GNL-LGVK-SSDFICFYDWETGKLIRRID-------------VSAVKYVIWSDDGE 157 (443)
T ss_dssp ----S--------S-EEEEE----SSS-EEEE-ETTEEEEE-TTT--EEEEES-------------S-E-EEEEE-TTSS
T ss_pred EEcCC--------cccceEE--c-CcE-EEEE-CCCCEEEEEhhHcceeeEEe-------------cCCCcEEEEECCCC
Confidence 33311 1122332 2 553 3333 44589999998854433332 34599999999876
Q ss_pred CCcCCCCCccceEEEecCCeEEEEecCCC------------ccccccc-ccccceeeecCCCCCeeEEccCC
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQGEE------------PFELLAE-PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~~~~------------~~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+++-.+ +..+++++...+ ..++..+ ...|.|..|.. +.++..+..
T Consensus 158 ----------~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~---d~fiYtT~~ 215 (443)
T PF04053_consen 158 ----------LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE---DCFIYTTSN 215 (443)
T ss_dssp ----------EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET---TEEEEE-TT
T ss_pred ----------EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc---CEEEEEcCC
Confidence 566665 446777776655 6677777 67899999887 344444433
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.81 E-value=0.0036 Score=34.95 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=24.6
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
..+.++.++|.+ .++++++.|+.+++||
T Consensus 13 ~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 679999999977 4678999999999996
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.43 Score=43.97 Aligned_cols=49 Identities=35% Similarity=0.444 Sum_probs=38.3
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.|++|+.. +..+....+.. +.+.++.|+ .+.|+....||+++++|+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCC-CCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 48888876 33454455542 799999999 889999999999999998644
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0031 Score=60.82 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=94.1
Q ss_pred ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC-cEEEEEccc
Q 019258 113 FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY-GLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~-~i~iwd~~~ 187 (343)
.|...-+|++|+ .+.++.|+..|.|+++++.++. ....+.+|.+ .++-+.-+. +..+++.+. .. -..+|++..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~S-avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQS-AVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcc-cccccccccc-ccccccccCCcceeeeeccccCchHHHhcccc
Confidence 466778999999 7789999999999999999984 6666677877 888887665 555555444 33 578999977
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.+.+.++|.. -.++.|+..-..- +.|+.-..+.+||+.+......++... -+..-.=+.
T Consensus 1177 --~~~~~Hsf~e-----------d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~-------~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1177 --TGGPRHSFDE-----------DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDT-------VTSSYSNNL 1235 (1516)
T ss_pred --ccCccccccc-----------cceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcc-------hhhhhhccc
Confidence 4555555542 3477777653332 456666789999998865544433111 011112266
Q ss_pred EEEeecCC
Q 019258 268 VQYDCHTK 275 (343)
Q Consensus 268 v~~~p~~~ 275 (343)
..|+|++.
T Consensus 1236 a~FsP~D~ 1243 (1516)
T KOG1832|consen 1236 AHFSPCDT 1243 (1516)
T ss_pred cccCCCcc
Confidence 78888876
No 340
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.13 Score=49.42 Aligned_cols=193 Identities=17% Similarity=0.109 Sum_probs=96.4
Q ss_pred CCCeEEEEeec-CCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCc-----EEEEEccCceeee
Q 019258 33 LSKLAVLAIYD-TDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGS-----LHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D-~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~-----v~v~~~~~~~~~~ 106 (343)
.+.++++|++| +.....+++.+|...+. +..+..+..+..=.+++-.++.+.++|+.||. +..||...++--.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 45788999999 44333455677765544 43344444433333444447888999999874 5555554322111
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCCc------EEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCc-
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDGR------VNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYG- 179 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~------v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~- 179 (343)
..... ..........+.+...+.||.++. +..||..+++ -...-.-...-.-..++...+...+.||.|+.
T Consensus 411 va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 411 VAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred cCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-eeecCCcccccccceEEEECCEEEEECCccCCC
Confidence 11111 111122223333778888886653 5567776653 11111111100122244344667777877763
Q ss_pred ----EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-----EEEEEcc
Q 019258 180 ----LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-----VFAWDLR 239 (343)
Q Consensus 180 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-----v~iwd~~ 239 (343)
|..||.+. .....+......+ ..+..+.+ +..+++.|+.||. |..||..
T Consensus 489 ~~~~VE~ydp~~----~~W~~v~~m~~~r----s~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 489 ALSSVERYDPET----NQWTMVAPMTSPR----SAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred ccceEEEEcCCC----CceeEcccCcccc----ccccEEEE---CCEEEEEecccCccccceeEEcCCC
Confidence 67788766 2232222111001 22222222 3467788887774 4455543
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.68 E-value=0.0048 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..|...|.++.|++... .+++++.||.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~----------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGK----------YLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCC----------EEEEecCCCeEEEcC
Confidence 45778999999999875 799999999999985
No 342
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.55 E-value=0.46 Score=41.31 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=113.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCe--eEEEcc-CCCeEEEEc----
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRI--SSLSTS-HQSLVAAST---- 89 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v--~~v~~~-~~~~l~~~s---- 89 (343)
-+.+-..++.+| ..+..++.+-..++ .+.++|.........+ ...++.- ---.|+ ++++|++.=
T Consensus 3 lP~RgH~~a~~p---~~~~avafaRRPG~----~~~v~D~~~g~~~~~~--~a~~gRHFyGHg~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 3 LPARGHGVAAHP---TRPEAVAFARRPGT----FALVFDCRTGQLLQRL--WAPPGRHFYGHGVFSPDGRLLYTTENDYE 73 (305)
T ss_pred CCccccceeeCC---CCCeEEEEEeCCCc----EEEEEEcCCCceeeEE--cCCCCCEEecCEEEcCCCCEEEEeccccC
Confidence 344566777777 34555666654443 3456666433222111 1111211 134577 788888863
Q ss_pred -CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe------------------CCCcEEEEECCCCceE
Q 019258 90 -LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG------------------EDGRVNLVSVIGGGEF 148 (343)
Q Consensus 90 -~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s------------------~dg~v~~wd~~~~~~~ 148 (343)
..|.|-|||... ....+-++...--+| ..+.+. ++.|+.+- .+-.+...|..+++..
T Consensus 74 ~g~G~IgVyd~~~-~~~ri~E~~s~GIGP-Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 74 TGRGVIGVYDAAR-GYRRIGEFPSHGIGP-HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred CCcEEEEEEECcC-CcEEEeEecCCCcCh-hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 468999999982 122223332211122 333333 43444432 2334444555665423
Q ss_pred EEEEc--CCCccceEEEEeCCCCEEEEEeC-CCc-------EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 149 KRVYD--GNGLVGFNCVKWASPTEFVTGGF-GYG-------LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 149 ~~~~~--~~~~~~v~~~~~~~~~~l~t~~~-d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.+..- .....++.-+++.+...++.+.. .+. |-+++ . ++++..+.........-.+.+-+|++++
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--R---GGALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--C---CCcceeccCChHHHHhhCCceEEEEEeC
Confidence 22211 22222577777776444443432 211 11221 1 2222222211100000016799999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
++..+.+|+=.-+.+.+||..+++...... -..+..|+-.++
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-------------l~D~cGva~~~~ 268 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVP-------------LPDACGVAPTDD 268 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeeccc-------------cCceeeeeecCC
Confidence 988777777778899999998865433322 345667766654
No 343
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.19 Score=48.34 Aligned_cols=195 Identities=6% Similarity=-0.057 Sum_probs=90.6
Q ss_pred CCCeEEEEeecC-CCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDT-DADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~-~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~ 106 (343)
++..++.|+.+. ....-.++.++...+. +..+..++.+-.-.+++..++.+.+.|+.++ .+..||...+.-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 446677777642 1111235566654432 2333333332222233333677778887754 47778876443222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCC-----------------------cEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDG-----------------------RVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg-----------------------~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
..... ........+...+...+.||.++ .+..||..+.+ -...-.......-.++
T Consensus 382 ~~~mp-~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMP-IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCC-cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCcccccCcE
Confidence 22111 11111122233477777777653 36667776652 2111111110001122
Q ss_pred EeCCCCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEE
Q 019258 164 KWASPTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFA 235 (343)
Q Consensus 164 ~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~i 235 (343)
....+...+.||.+ ..+..||.+. ......+......+ .....+.+ +..+++.|+.|| .+..
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~---~~~W~~~~~m~~~r----~~~~~~~~---~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNT---YNGWELITTTESRL----SALHTILH---DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCC---CCCeeEccccCccc----ccceeEEE---CCEEEEEeeecceeehhh
Confidence 22335566667654 2356788754 12232222111101 22233333 246888999888 6777
Q ss_pred EEccC
Q 019258 236 WDLRW 240 (343)
Q Consensus 236 wd~~~ 240 (343)
||..+
T Consensus 530 yd~~~ 534 (557)
T PHA02713 530 FNVYT 534 (557)
T ss_pred cCccc
Confidence 77765
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.0068 Score=58.30 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=77.7
Q ss_pred EEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 161 NCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
+-.+|+| ...|+.++. .|.|.||-- + ++|-....-. -.+++++|||. ..+++.|-+-|.+.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-t---GEPqr~Vt~P--------~hatSLCWHpe-~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-T---GEPQRDVTYP--------VHATSLCWHPE-EFVLAQGWEMGVSDV 85 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-C---CCCCcccccc--------eehhhhccChH-HHHHhhccccceeEE
Confidence 3457888 666665543 677888742 2 4443333211 23668999997 467889999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
|.....+. .... ..|..+|..+.|++++. .++++..-|.+..|...
T Consensus 86 ~~~~~~e~-htv~----------~th~a~i~~l~wS~~G~----------~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTET-HTVV----------ETHPAPIQGLDWSHDGT----------VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCcee-eeec----------cCCCCCceeEEecCCCC----------eEEEcCCCceeEEEEee
Confidence 98766333 2333 56999999999999988 79999999999999865
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.49 Score=39.78 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=75.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
..+++.++..+.++--|..+++...+.+-+. .+-+-+.--++.++.|.+.|.+.+.+..+ +..+..+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~---RiE~sa~vvgdfVV~GCy~g~lYfl~~~t---Gs~~w~f~~~~--- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV---RIECSAIVVGDFVVLGCYSGGLYFLCVKT---GSQIWNFVILE--- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc---eeeeeeEEECCEEEEEEccCcEEEEEecc---hhheeeeeehh---
Confidence 4567888899999988988885443333222 23333333477899999999999999998 77777766443
Q ss_pred CCcccCeE-EEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 205 GKASGMIH-SVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 205 ~~~~~~i~-~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.|. .....+++ .++..|+.|++.+..|.++.....+..
T Consensus 94 -----~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 -----TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -----hhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecc
Confidence 122 23345555 467899999999999999866655543
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.27 E-value=0.89 Score=41.61 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=88.8
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc-CCCCCcccCeEEEEEcC-----CC--CeEEEEEecC
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-GSQGKASGMIHSVDIHP-----SR--KHTCLAGGSS 230 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p-----~~--~~~~~sg~~d 230 (343)
.|++++.+.-..++.|..+|.+.+.|+|. ...+.+-.... ...+.....++++.|.- ++ .-++++|+..
T Consensus 88 ~vtal~~S~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 88 PVTALKNSDIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp SEEEEEE-BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cEeEEecCCCcEEEEEecCCcEEEEECCC---CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 78999987777788888899999999987 55555422111 01112225688887762 11 2467889999
Q ss_pred CcEEEEEccC-Cc--eeeeeecCCCCcccccCCccccEEEEE-EeecCCCC----------cCCCCCccceEEEecCCeE
Q 019258 231 GTVFAWDLRW-QQ--QSIVLSGVGTGEAVTHSLSESEVWEVQ-YDCHTKSS----------NISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 231 g~v~iwd~~~-~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~~----------~~~~~~~~~l~s~s~dg~i 296 (343)
|.+.+|.+-- .. ....+.... ..+.+.|..|. ++.+.... ...+..+..++....+..+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred CCEEEEEEecCCCCceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 9999998742 11 222222100 23566776666 33332211 0111122234555557778
Q ss_pred EEEecCCC--cccccccccccceeeec----CCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEE--PFELLAEPCAINSFDID----PQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~--~~~~~~~~~~i~s~~~~----~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+++..... .......+....+..+- ...+..|+|=..++.|+++.-|
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 88776432 12222222222222221 1134789999999999999866
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.27 Score=45.38 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=81.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--------CCEEEEEeCCCcEEEEEccccCCCC-CeeEE
Q 019258 127 ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--------PTEFVTGGFGYGLQWWDLRRAGSGG-PVLQF 197 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~ 197 (343)
.+.++.....++-.|++.++ +...+..+.. |.-+.+.| ...-+.|-+|+.|.-||.|- .+. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GK-IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv--~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV--QGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccce-eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccc--cCcceeeee
Confidence 34566666778888999995 6666666665 55555544 12234466788899999997 333 22222
Q ss_pred ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 198 KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 198 ~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
.++....+ .-..|.+-..+| .+++|+.+|.|++||- .+......+ ++...+|..|..+.++..
T Consensus 423 q~kqy~~k---~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAl----------PgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 423 QSKQYSTK---NNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTAL----------PGLGDAIKHVDVTADGKW 485 (644)
T ss_pred eccccccc---cccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcc----------cccCCceeeEEeeccCcE
Confidence 22221111 235566655554 4688999999999994 333333333 556788999999988873
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.88 E-value=1.1 Score=41.64 Aligned_cols=139 Identities=8% Similarity=0.022 Sum_probs=73.4
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
....+.++ +++.+++ ..||...||.....+. ...+....+.|. .+.++.-...++|.++.--+......
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--------EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--------cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 46788888 5555555 7888888887432211 123455677787 67788888889999963322211112
Q ss_pred EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 151 VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
+ .... .+..+- ++..|... .++.|.+||..+ ++.+.++.. .+|..|.|++++..+.+. + +
T Consensus 105 i-~~~~--~~~~If--~G~LL~~~-~~~~i~~yDw~~---~~~i~~i~v---------~~vk~V~Ws~~g~~val~-t-~ 164 (443)
T PF04053_consen 105 I-KLPF--SVEKIF--GGNLLGVK-SSDFICFYDWET---GKLIRRIDV---------SAVKYVIWSDDGELVALV-T-K 164 (443)
T ss_dssp ----SS---EEEEE---SSSEEEE-ETTEEEEE-TTT-----EEEEESS----------E-EEEEE-TTSSEEEEE---S
T ss_pred E-cCCc--ccceEE--cCcEEEEE-CCCCEEEEEhhH---cceeeEEec---------CCCcEEEEECCCCEEEEE-e-C
Confidence 2 1111 233332 24445544 455899999988 777777762 238999999998765443 4 4
Q ss_pred CcEEEEEccC
Q 019258 231 GTVFAWDLRW 240 (343)
Q Consensus 231 g~v~iwd~~~ 240 (343)
..+.+++...
T Consensus 165 ~~i~il~~~~ 174 (443)
T PF04053_consen 165 DSIYILKYNL 174 (443)
T ss_dssp -SEEEEEE-H
T ss_pred CeEEEEEecc
Confidence 4777877543
No 349
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.72 E-value=1 Score=42.44 Aligned_cols=155 Identities=8% Similarity=0.109 Sum_probs=89.9
Q ss_pred CeEEEEec-CCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-----CCEEEEEeCCCcEEEEEccc
Q 019258 117 PISGVDLT-GSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-----PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 117 ~v~~~~~~-~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~t~~~d~~i~iwd~~~ 187 (343)
++.+++|. |+.++-.. ..|.+++=| . .+...++ .|..+.|.| ...+++.-..+.|.+|.+-.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s-~viGqFE-----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---S-KVIGQFE-----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---c-cEeeccc-----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 89999998 76665432 344444322 1 2333332 489999988 23688899999999999863
Q ss_pred cCC--CCCeeE--EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccc
Q 019258 188 AGS--GGPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 188 ~~~--~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 263 (343)
... .+.+.. .+..+. -+---..+-|||... +++.=.....=.+++.+....++..- -.-.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~----~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaD----------i~~~G 156 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREP----FPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKAD----------IKTSG 156 (671)
T ss_pred CccccccceeeeeeeccCC----cccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEe----------ccCCc
Confidence 000 111111 111000 001133567999875 44444443333566776654444432 22357
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-|.+.+|.+|++. .+++.+..=.-++||...+
T Consensus 157 ~IhCACWT~DG~R---------LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 157 LIHCACWTKDGQR---------LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEEecCcCCE---------EEEEeCCeEEEEEecCchh
Confidence 7999999999985 4555555445689998655
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.69 E-value=0.042 Score=33.29 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=29.3
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~ 100 (343)
.-..+.+|..++|+ ..++||.++.+|.|.+|+++
T Consensus 7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 33455679999999 88999999999999999985
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.64 E-value=1.3 Score=38.23 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=115.0
Q ss_pred CCCeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-------
Q 019258 81 HQSLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR------- 150 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~------- 150 (343)
.++.|+.|+.+| +.+|++. ......+. +..+|..+... -+.++.-+ |+.+.++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 578899999999 8999883 22222222 33348888887 34444444 49999999876321110
Q ss_pred -------EEcCCCccceEEEE---eCCCCEEEEEeCCCcEEEEEccccC-CC-CCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 151 -------VYDGNGLVGFNCVK---WASPTEFVTGGFGYGLQWWDLRRAG-SG-GPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 151 -------~~~~~~~~~v~~~~---~~~~~~l~t~~~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
...... .+...+ -......+.....++|.+|...... .. ....++... ..+..++|.+
T Consensus 79 ~~~~~~~~~~~~~--~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--------~~~~~i~~~~ 148 (275)
T PF00780_consen 79 KSRSLPTKLPETK--GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--------DPPSSIAFLG 148 (275)
T ss_pred ccccccccccccC--CeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--------CCcEEEEEeC
Confidence 111111 344444 1124555666667799999886610 11 233444432 5688999985
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc-c-ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA-V-THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+ . ++.|.. ....+.|+.++ .+..+........ . .......++..+... ++ .++-|-++-.+
T Consensus 149 ~--~-i~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------e~Ll~~~~~g~ 211 (275)
T PF00780_consen 149 N--K-ICVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-----------EFLLCYDNIGV 211 (275)
T ss_pred C--E-EEEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-----------eEEEEecceEE
Confidence 3 3 445554 45889999863 3333321110000 0 000011223333332 22 23334444344
Q ss_pred EEEecCCCcc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 297 AVVEQGEEPF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 297 ~~~~~~~~~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+=..+.... ..+.=.....++.+.. .||++-+++ .|.|++
T Consensus 212 fv~~~G~~~r~~~i~W~~~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWSSAPQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEcCCCCcCcccEEEcCCchhEEEEEC---CEEEEECCC-EEEEEE
Confidence 4433332222 1111134667888876 688888765 588875
No 352
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.52 E-value=1.8 Score=41.75 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=98.0
Q ss_pred CCCeEEEEeecCC-CCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-C-----cEEEEEccCceee
Q 019258 33 LSKLAVLAIYDTD-ADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-G-----SLHVLSSAMQVLL 105 (343)
Q Consensus 33 ~~~~l~t~s~D~~-~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-g-----~v~v~~~~~~~~~ 105 (343)
.+.+++.|++++. ...-.++.+|...+ .+..+..++.+..-.+++..++.++++|+.| | ++..||...++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4567788888752 11123556666543 2444555555555566666677888999888 3 4556666544433
Q ss_pred eeeccCCccccCeEEEEecCCEEEEEeCCCc-----EEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCC--
Q 019258 106 SVDENSGFHVGPISGVDLTGSECVSVGEDGR-----VNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGY-- 178 (343)
Q Consensus 106 ~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~-----v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~-- 178 (343)
...... ............|...+.||.||. +-.||..+.+ -...-.....-.-.+++-..+...+.||.++
T Consensus 363 ~~a~M~-~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMN-TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCcc-CccccceeEEECCEEEEEeccccccccccEEEecCCCCc-ccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 322211 111111222223788889998864 5567766542 1111000000011122222356677777543
Q ss_pred ----cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-----EEEEEccC
Q 019258 179 ----GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-----VFAWDLRW 240 (343)
Q Consensus 179 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-----v~iwd~~~ 240 (343)
.+..||.++ ............+ ... .++.-. ..|++.|+.||. |..||.++
T Consensus 441 ~~l~sve~YDP~t----~~W~~~~~M~~~R----~~~-g~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 441 NCLNSVECYDPET----NTWTLIAPMNTRR----SGF-GVAVLN--GKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cccceEEEEcCCC----CceeecCCccccc----ccc-eEEEEC--CEEEEECCccCCCccceEEEEcCCC
Confidence 456677765 2222222111111 112 233322 468888998873 67777765
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.22 Score=45.89 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=87.2
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-------eEEEEEecCCcEEEEEccCCc
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-------HTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-------~~~~sg~~dg~v~iwd~~~~~ 242 (343)
.+.++.....|+-.|++. ++.+...+.+. -|+-+.+.|+.. .. +.|=+|..|+-||+|-..
T Consensus 348 il~~~~~~~~l~klDIE~---GKIVeEWk~~~--------di~mv~~t~d~K~~Ql~~e~T-lvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIER---GKIVEEWKFED--------DINMVDITPDFKFAQLTSEQT-LVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeeccc---ceeeeEeeccC--------CcceeeccCCcchhccccccc-EEeecCCceEEecccccC
Confidence 344555567777788888 77777766553 266677776532 12 347789999999998643
Q ss_pred e-eeeeecCCCCcccccCCcc----ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCccccccc-cccc
Q 019258 243 Q-SIVLSGVGTGEAVTHSLSE----SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAE-PCAI 315 (343)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~-~~~i 315 (343)
. .+... +.|. .-..+.+-..++ +++.||.+|.|++++.- ....+.++. ..+|
T Consensus 416 ~~kl~~~----------q~kqy~~k~nFsc~aTT~sG-----------~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 416 KNKLAVV----------QSKQYSTKNNFSCFATTESG-----------YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred cceeeee----------eccccccccccceeeecCCc-----------eEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 3 11111 1121 112233333222 79999999999999873 334455555 6789
Q ss_pred ceeeecCCCCCeeEEccCCceEE
Q 019258 316 NSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
.-++++. +|.+++|.++.--+.
T Consensus 475 ~hVdvta-dGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 475 KHVDVTA-DGKWILATCKTYLLL 496 (644)
T ss_pred eeEEeec-cCcEEEEecccEEEE
Confidence 9999998 789999999774433
No 354
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.38 E-value=0.88 Score=42.80 Aligned_cols=148 Identities=13% Similarity=0.099 Sum_probs=85.5
Q ss_pred CCeeEEEccCCCeEEEEc---CCCcEEEEEccCceeeeeeccCCccccCeEEEEec------CCEEEEEeCCCcEEEEEC
Q 019258 72 TRISSLSTSHQSLVAAST---LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT------GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 72 ~~v~~v~~~~~~~l~~~s---~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~s~s~dg~v~~wd~ 142 (343)
.+|..++|.+++.++... .+|.++.=|- ..+ +...-|.++.|. ...+++.-....|.+|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 478899999776655432 1333222111 111 233467888887 236777788888999998
Q ss_pred CC-----CceE-EEEEcCCCccc--eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeE
Q 019258 143 IG-----GGEF-KRVYDGNGLVG--FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIH 212 (343)
Q Consensus 143 ~~-----~~~~-~~~~~~~~~~~--v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 212 (343)
.- ++.. .+..+-.+..+ -...-|+| ...|..-.....-.+++++. ....++. ++. + +.|+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~--d~srVkaDi~~----~----G~Ih 159 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC--DSSRVKADIKT----S----GLIH 159 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee--CCceEEEeccC----C----ceEE
Confidence 52 2211 12211111111 24567899 44443334444445677777 2333322 332 2 7799
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 213 SVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
|.+|.++|+.++++-++.=.-++||-.
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 999999998887777766678899853
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.24 E-value=1.7 Score=37.02 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=98.8
Q ss_pred cCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC-CCcEEEEEccccCCC
Q 019258 116 GPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF-GYGLQWWDLRRAGSG 191 (343)
Q Consensus 116 ~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~ 191 (343)
..+.++.|+ .+ .++.....+.|.-.+.. ++ +.+.+......-.-.+++..++.++.... ++.+.++++.. ..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~--~~ 97 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD--DT 97 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec--cc
Confidence 458999998 34 55566677888777865 43 44444333222588889888666666654 89999999854 12
Q ss_pred CC--ee---EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC--CceeeeeecCCCCcccccCCcccc
Q 019258 192 GP--VL---QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW--QQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 192 ~~--~~---~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
.. .. ++....... ....+-.++|+|.+..+++ +-+..-..+|.++. ........... ...........
T Consensus 98 ~~~~~~~~~~~~l~~~~~--~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d 172 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNK--GNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQ--DLDDDKLFVRD 172 (248)
T ss_dssp TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-H--HHH-HT--SS-
T ss_pred cccchhhceEEecccccC--CCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeecccc--ccccccceecc
Confidence 21 21 122111101 1144889999998777665 45555556666543 11111110000 00000223456
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc----------cccceeeecCCCCCeeEEccCC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP----------CAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~----------~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+.+++++|.... .++-..+...|..++....+...+.-. ..-=.+++++ +|..-|++ +.
T Consensus 173 ~S~l~~~p~t~~---------lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-Ep 241 (248)
T PF06977_consen 173 LSGLSYDPRTGH---------LLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-EP 241 (248)
T ss_dssp --EEEEETTTTE---------EEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-TT
T ss_pred ccceEEcCCCCe---------EEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-CC
Confidence 789999998775 555555666777777655443333221 1234556666 33333333 45
Q ss_pred ceEEEE
Q 019258 335 ESIAIV 340 (343)
Q Consensus 335 ~~i~~~ 340 (343)
.-+|+|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555555
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.23 E-value=1.7 Score=37.00 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=89.2
Q ss_pred CCCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEe-CCCcEEEEECCCCc
Q 019258 71 PTRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVG-EDGRVNLVSVIGGG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s-~dg~v~~wd~~~~~ 146 (343)
...++++.|. +.+ ++++....+.|..++.. ++.+...... -.+..-+|.+. +..++... .++.+.+.++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3469999999 444 56666667777666654 3334333332 23466778777 55565555 58899998884311
Q ss_pred ------eEEEE-Ec-C-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcccCeEEE
Q 019258 147 ------EFKRV-YD-G-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 147 ------~~~~~-~~-~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~v 214 (343)
..... +. . .....+-.++|.+ .+.|+.+-...-.+++.+........+.. ...... ......-+.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l 176 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGL 176 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccce
Confidence 11111 11 1 1223689999999 78888887777777777653000111111 111110 01111448899
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
+++|...++++-..++..+..+|..
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT
T ss_pred EEcCCCCeEEEEECCCCeEEEECCC
Confidence 9999988888888899999999943
No 357
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.23 E-value=0.029 Score=45.89 Aligned_cols=142 Identities=8% Similarity=-0.027 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
..|...+.+|.|+-++++.-. +.. +.+..|... .... +..++.|+.+|.|.+|................. .+
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k-~s~-rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-~i 104 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHK-ESC-RSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-SI 104 (238)
T ss_pred hhhccccCCcccccchhhhhh-hhh-hhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccc-cc
Confidence 446667788888888876211 000 001112211 1111 788999999999999988642222222222222 23
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--ecCCcEEEE
Q 019258 161 NCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--GSSGTVFAW 236 (343)
Q Consensus 161 ~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--~~dg~v~iw 236 (343)
.+.--.. ..+..+++.|+.|+.|.... .+.+-..-.|.. .++........+.. ++.. +.|..++.|
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p---~k~~g~~g~h~~------~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKP---NKVLGYVGQHNF------ESGEELIVVGSDEF-LKIADTSHDRVLKKW 174 (238)
T ss_pred eeccccccccceeEEeccCCceeeecccc---CceeeeeccccC------CCcceeEEecCCce-EEeeccccchhhhhc
Confidence 3322122 45788899999999999865 333322222221 22223333333332 3344 556666777
Q ss_pred EccC
Q 019258 237 DLRW 240 (343)
Q Consensus 237 d~~~ 240 (343)
++..
T Consensus 175 ~ve~ 178 (238)
T KOG2444|consen 175 NVEK 178 (238)
T ss_pred chhh
Confidence 6654
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.14 E-value=2.2 Score=37.79 Aligned_cols=246 Identities=15% Similarity=0.123 Sum_probs=123.1
Q ss_pred EEecCCCCCCCCeEEEEe--ecCCC---CCCceeeeeCCCCCCCCCCccCCCCC--CeeEEEccCCCeEEEEcCCCcEEE
Q 019258 24 VRWLPPLSPLSKLAVLAI--YDTDA---DSPSLETHSISLPASLTPHSQWTPPT--RISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s--~D~~~---~~~~l~~w~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
+..+| +++.+.+++ +.+-. +.--|.+||..+ ..+..++..+. +...+. ....+.....+..+.+
T Consensus 41 ~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~EI~iP~k~R~~~~~--~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 41 VALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGEIEIPPKPRAQVVP--YKNMFALSADGKFLYV 111 (342)
T ss_dssp EEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEEEEETTS-B--BS----GGGEEE-TTSSEEEE
T ss_pred eeECC----CCCEEEEEEEEEeccccccceeEEEEEecCc---CcccceEecCCcchheecc--cccceEEccCCcEEEE
Confidence 44555 777776654 21100 111368999844 22222222222 222211 1233444444455556
Q ss_pred EEccCceeeeeeccCC------ccccCeEEEEec-CCEEEEEeCCCcEEEEECCC-CceEEE---EEcCCCccce-EEEE
Q 019258 97 LSSAMQVLLSVDENSG------FHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG-GGEFKR---VYDGNGLVGF-NCVK 164 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~------~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~-~~~~~~---~~~~~~~~~v-~~~~ 164 (343)
|++.....+.+.-... .-...|..+--. ...|.+-|.||++.-..++. ++...+ .+..... ++ ..-.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d-p~f~~~~ 190 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD-PLFEHPA 190 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS--B-S--E
T ss_pred EccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc-ccccccc
Confidence 6655333333322110 011234444333 67899999999999998874 432221 2222222 22 2223
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecc---cCCCCCcccCeEEEEEcCCCCeEEEEEe-------cCC
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGN---FGSQGKASGMIHSVDIHPSRKHTCLAGG-------SSG 231 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~i~~v~~~p~~~~~~~sg~-------~dg 231 (343)
+.. ...++-.+..|.|+--|+.. ..+ ...+... +.+.+.+++-..-+++|+....+++--. .|+
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg---~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSG---DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETT---SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred eECCCCeEEEEecCCEEEEEeccC---CcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 333 55677789999999988876 221 1122211 1112344455666888876555544311 122
Q ss_pred --cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEecCC
Q 019258 232 --TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQGE 303 (343)
Q Consensus 232 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~~~ 303 (343)
.|-++|+.+.+....+. -+.++.+|+.+.+..- .|++.+ .++.|.++|...
T Consensus 268 gteVWv~D~~t~krv~Ri~------------l~~~~~Si~Vsqd~~P---------~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIP------------LEHPIDSIAVSQDDKP---------LLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEEE------------EEEEESEEEEESSSS----------EEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECCCCeEEEEEe------------CCCccceEEEccCCCc---------EEEEEcCCCCeEEEEeCcC
Confidence 26666887754433332 2457889999987664 676654 578999999753
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.11 Score=51.60 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
...++.|++.|.+...|.+. . +..+ +.+.... ++|++++|+.+|. +++.|-.+|.|.+||+...
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~---n--L~~~--~~ne~v~--~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG---N--LGPL--HQNERVQ--GPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc---c--cchh--hcCCccC--CcceeeEecCCCc-eeccccCCCcEEEEEccCC
Confidence 45688899999999999877 2 2211 2221222 8899999999886 5678999999999999773
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.05 E-value=0.076 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCC
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS 57 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~ 57 (343)
++..-....+|..++|+| ..+++|.|+.|++ |.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P----~mdLiA~~t~~g~-----v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCP----TMDLIALGTEDGE-----VLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECC----CCCEEEEEECCCe-----EEEEECC
Confidence 344445567799999999 7899999999875 6688873
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.24 Score=46.58 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..|.-+.|+ .-+++|.+..+|.+.+++++-. .+-... .|..+++ +++|. |+.++.|-.||+|++.|.+.+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccc-eeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34567788888 7789999999999999998733 232222 2444555 99998 899999999999999999987
Q ss_pred ceEEEEEcCCCccceEEEEeCC
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
............ .|.++-|.+
T Consensus 95 ~~l~~~~~s~e~-~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVET-DISKGIWDR 115 (665)
T ss_pred Cceecccccccc-chheeeccc
Confidence 534332111222 577777754
No 362
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=4.2 Score=39.57 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=111.3
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeecc-CCccccCeEEEEecCCEE
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDEN-SGFHVGPISGVDLTGSEC 128 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~ 128 (343)
.|+|++..+..-. ...+.| +++-.+.|++..-|+.-..+|++++|++... .+..... ...-...|..+.+..+-+
T Consensus 65 ~I~If~~sG~lL~--~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNISGQLLG--RILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEeccccchH--HHHhcC-CCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 3778888653221 112333 4888999997778888899999999998621 1111000 001112344443332223
Q ss_pred EEEeCCCcEEEE-ECCCCceEEEEEcCCCc-cceEEEEeCCC----CEEEEEeCCCcEEEEEccccCCCCCeeEEecccC
Q 019258 129 VSVGEDGRVNLV-SVIGGGEFKRVYDGNGL-VGFNCVKWASP----TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG 202 (343)
Q Consensus 129 ~s~s~dg~v~~w-d~~~~~~~~~~~~~~~~-~~v~~~~~~~~----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (343)
+.-..+|.+.+- +.+.. ...+..+-+.. ....|-...++ ..++-...--...++.... .......+....
T Consensus 141 avlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~--~~~q~~~~~~~~- 216 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE--SRVQLHALSWPN- 216 (829)
T ss_pred EEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec--ccccccccCCCC-
Confidence 333334444432 22221 11222110111 01122221221 1111111001111222222 011111121111
Q ss_pred CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 203 SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 203 ~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
..+..+..+|+.+++ +-=.++|.|.+-+....+....+.. ..| ..-.+++|+....
T Consensus 217 ------~~~~ki~VS~n~~~l-aLyt~~G~i~~vs~D~~~~lce~~~---------~~~-~~p~qm~Wcgnda------- 272 (829)
T KOG2280|consen 217 ------SSVVKISVSPNRRFL-ALYTETGKIWVVSIDLSQILCEFNC---------TDH-DPPKQMAWCGNDA------- 272 (829)
T ss_pred ------ceEEEEEEcCCcceE-EEEecCCcEEEEecchhhhhhccCC---------CCC-CchHhceeecCCc-------
Confidence 457888999988765 4557889888887654333222220 112 2223788885432
Q ss_pred CccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEcc
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
++++.+..|.+.........++.+..++-+..+++ -.+++.+
T Consensus 273 -----Vvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~DG---VRI~t~t 314 (829)
T KOG2280|consen 273 -----VVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVDG---VRIITST 314 (829)
T ss_pred -----eEEEEeeeEEEEcCCCCccccccCCCceeeeccCe---eEEeccc
Confidence 56666666766666555545555444444444333 4555444
No 363
>PHA03098 kelch-like protein; Provisional
Probab=94.40 E-value=5 Score=38.49 Aligned_cols=193 Identities=7% Similarity=-0.025 Sum_probs=84.9
Q ss_pred CCeEEEEeecCCCC-CCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeeee
Q 019258 34 SKLAVLAIYDTDAD-SPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLSV 107 (343)
Q Consensus 34 ~~~l~t~s~D~~~~-~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~~ 107 (343)
+..++.|+.+.... ...++.++..... +..+..++.+-.-.++...++.+++.|+.++ .+..||.....-...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 45677777654321 1135566664432 2222233322111222222667777777652 456676653322111
Q ss_pred eccCCccccCeEEEEecCCEEEEEeCC------CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC----
Q 019258 108 DENSGFHVGPISGVDLTGSECVSVGED------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG---- 177 (343)
Q Consensus 108 ~~~~~~h~~~v~~~~~~~~~~~s~s~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d---- 177 (343)
....... .........+..++.||.+ ..+..||..+.+ -...........-.++....+..++.||.+
T Consensus 374 ~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 1111011 1112222336666777632 357788887653 222111111001112222335556666643
Q ss_pred ----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccC
Q 019258 178 ----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRW 240 (343)
Q Consensus 178 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~ 240 (343)
..+..||... .....+......+ .....+.+ +..+++.|+.+ ..|..||..+
T Consensus 452 ~~~~~~v~~yd~~~----~~W~~~~~~~~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 452 IKVYNIVESYNPVT----NKWTELSSLNFPR----INASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CcccceEEEecCCC----CceeeCCCCCccc----ccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2378888866 2222222111001 11112222 23567777754 4677888765
No 364
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.34 E-value=0.17 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.5
Q ss_pred cCeEEEEEcCCCC--eEEEEEecCCcEEEEEccC
Q 019258 209 GMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 209 ~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~ 240 (343)
+.+.++.|+|... .+++-.-.-|.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998654 6788878889999999995
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.29 E-value=4.5 Score=37.51 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEE--EccccCCCCCeeEEecccCCCCCcccC
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWW--DLRRAGSGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (343)
..+.++|+.+++... +..... .-..-+|+| ...+++...|+...|| |+.. +....+.... +.
T Consensus 218 ~~i~~~~l~~g~~~~-i~~~~g--~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~----~~~~~Lt~~~-------gi 283 (425)
T COG0823 218 PRIYYLDLNTGKRPV-ILNFNG--NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG----KNLPRLTNGF-------GI 283 (425)
T ss_pred ceEEEEeccCCccce-eeccCC--ccCCccCCCCCCEEEEEECCCCCccEEEEcCCC----CcceecccCC-------cc
Confidence 458899998874332 222222 234557778 4455555567765555 6655 2233333222 22
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEE--EEEccC
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVF--AWDLRW 240 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~--iwd~~~ 240 (343)
-..=.|+|+|..++.+.+..|.-. +.|...
T Consensus 284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 235578999999988888888744 445544
No 366
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.26 E-value=1.2 Score=40.62 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=56.5
Q ss_pred CcEEEEECCCCceEEEEEcCC-CccceEEEEeCC----CCEEEEEeCCCcEEEEEccccCCC----CCeeEEeccc--CC
Q 019258 135 GRVNLVSVIGGGEFKRVYDGN-GLVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRRAGSG----GPVLQFKGNF--GS 203 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~----~~~~~~~~~~--~~ 203 (343)
.++.+||+.+.+ ..+.+.-. +......+.|.. ..-|+.+....+|-.|--.. .+ +.+.++.... +.
T Consensus 222 ~~l~vWD~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeeeeEEEECCCcccCcc
Confidence 679999999985 55555433 332355666643 23366666666666664422 11 1222222110 00
Q ss_pred C--------CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 204 Q--------GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 204 ~--------~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
. +.-+.-|+.|..+.+.+++.++.--.|.|+.||+..+..|...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0 0001458999999999999999999999999999887776554
No 367
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=3.6 Score=35.51 Aligned_cols=178 Identities=17% Similarity=0.055 Sum_probs=104.4
Q ss_pred eeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEE
Q 019258 52 ETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSV 131 (343)
Q Consensus 52 ~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 131 (343)
.+|+.+......++.....++-+.++.++ +++...+..+.-++|+|+.............. .+--.++..+|++...+
T Consensus 67 ditn~~~~t~~~l~~~i~~~~l~~Dv~vs-e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVa 144 (370)
T COG5276 67 DITNVSLQTHDVLLSVINARDLFADVRVS-EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVA 144 (370)
T ss_pred cccCcccccCcceEEEEehhhhhheeEec-ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEe
Confidence 35555433334445555666778888888 55566666666799999985544433332211 13446677778888888
Q ss_pred eCCCcEEEEECCCCce--EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 132 GEDGRVNLVSVIGGGE--FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
..|.-+.+.|+.+... +...+..... ....++.+ +++-..+..|+-+.+-|+.. +..|...-.-.+ . .
T Consensus 145 dlddgfLivdvsdpssP~lagrya~~~~-d~~~v~IS-Gn~AYvA~~d~GL~ivDVSn--p~sPvli~~~n~--g----~ 214 (370)
T COG5276 145 DLDDGFLIVDVSDPSSPQLAGRYALPGG-DTHDVAIS-GNYAYVAWRDGGLTIVDVSN--PHSPVLIGSYNT--G----P 214 (370)
T ss_pred eccCcEEEEECCCCCCceeeeeeccCCC-CceeEEEe-cCeEEEEEeCCCeEEEEccC--CCCCeEEEEEec--C----C
Confidence 8666688889877432 2333333322 23445444 45566667899999999988 555543322222 1 3
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
.+.++..+++.. + ++-. +.-+.+-|...+..|
T Consensus 215 g~~sv~vsdnr~-y-~vvy-~egvlivd~s~~ssp 246 (370)
T COG5276 215 GTYSVSVSDNRA-Y-LVVY-DEGVLIVDVSGPSSP 246 (370)
T ss_pred ceEEEEecCCee-E-EEEc-ccceEEEecCCCCCc
Confidence 588888887643 2 3322 334666666554433
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.02 E-value=0.26 Score=40.49 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
....++.|+.+|.|.+|..+..... ......-...|.++-.. +....+++.||.++.|.+.-.+ .......|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchH--HHhhhcccccceeccccccccceeEEeccCCceeeeccccCc-eeeeeccccC
Confidence 4577999999999999988721111 00000112234444344 4477788999999999997764 3433333431
Q ss_pred cceEEEEeCC-CCEEEEE--eCCCcEEEEEccc
Q 019258 158 VGFNCVKWAS-PTEFVTG--GFGYGLQWWDLRR 187 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~--~~d~~i~iwd~~~ 187 (343)
..+..+.... ...+..+ +.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1222222222 3334444 5566666666544
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.47 Score=47.51 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=67.9
Q ss_pred eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 118 ISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 118 v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
+.+.+.-+..++.|+..|.+...|..+.-.+.. ...+...+|++++|+. +..++.|-.+|.|.+||... +++++.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~-~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~---~k~l~~ 167 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLH-QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR---AKILKV 167 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhh-cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC---Ccceee
Confidence 344443367788899999999988876422211 1223334799999999 66666666699999999988 566665
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
+.-+.. .+ ..+--+.+..++. .++++..-|. +|.+
T Consensus 168 i~e~~a-p~---t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGA-PV---TGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCC-cc---ceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 554331 11 2233344444333 5667666665 4544
No 370
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=3.8 Score=35.38 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=107.7
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEE
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVS 130 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 130 (343)
|++.|++.++.+.++..+...+--.++..+ ++...++..|.-+.+.|+.+.+...+........+.-..+..+|++-..
T Consensus 108 L~IvDIS~P~sP~~~~~lnt~gyaygv~vs-Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYv 186 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNTDGYAYGVYVS-GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYV 186 (370)
T ss_pred eEEEeccCCCCcceeccccCCceEEEEEec-CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEE
Confidence 889999887777767666665555555555 7888887766667788998554443332222233445677888999999
Q ss_pred EeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 131 VGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
+..|+-+++-|+.+...+. ..+.... .+..+..+++.-++ .-.+-.+.+-|... ...+..+-..+. +..
T Consensus 187 A~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~sv~vsdnr~y~-vvy~egvlivd~s~---~ssp~~~gsyet-~~p-- 257 (370)
T COG5276 187 AWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYSVSVSDNRAYL-VVYDEGVLIVDVSG---PSSPTVFGSYET-SNP-- 257 (370)
T ss_pred EEeCCCeEEEEccCCCCCeEEEEEecCC--ceEEEEecCCeeEE-EEcccceEEEecCC---CCCceEeecccc-CCc--
Confidence 9999999999998754332 2222222 47777766644344 44556667777765 232222222211 111
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..+..+...- .. ....-.+.-+.+-|+.++..|.-
T Consensus 258 ~~~s~v~Vs~--~~-~Yvadga~gl~~idisnp~spfl 292 (370)
T COG5276 258 VSISTVPVSG--EY-AYVADGAKGLPIIDISNPPSPFL 292 (370)
T ss_pred ccccceeccc--ce-eeeeccccCceeEeccCCCCCch
Confidence 2233334432 22 22334555667778777655443
No 371
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=4.3 Score=35.05 Aligned_cols=209 Identities=14% Similarity=0.139 Sum_probs=108.7
Q ss_pred ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC-CCcEEEEEccccCCC
Q 019258 115 VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF-GYGLQWWDLRRAGSG 191 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~ 191 (343)
...+.++.|+ .+.+++......-.++=..++. +.+.+.-..-...-.++|..++.++.+.. ++++.++.+.. .
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~---~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA---D 160 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC---C
Confidence 3458999999 6777777777777776555564 44443322211355677777666666655 88888887765 2
Q ss_pred CCeeE-----EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee--ecCCCCcccccCCcccc
Q 019258 192 GPVLQ-----FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL--SGVGTGEAVTHSLSESE 264 (343)
Q Consensus 192 ~~~~~-----~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~h~~~ 264 (343)
..+.. +..-.. .+ .+.-.-.++|+|.+..+++ +=+-.=+.||-.......... ....... ....-..
T Consensus 161 t~~~~~~~~~i~L~~~-~k-~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~---~~~f~~D 234 (316)
T COG3204 161 TTVISAKVQKIPLGTT-NK-KNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTAD---RDLFVLD 234 (316)
T ss_pred ccEEeccceEEecccc-CC-CCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccc---cceEeec
Confidence 22111 111110 00 1244778999998766654 344344555544332211111 1000000 0112345
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
|.++.|++.... .++-.-+++.|.-.+...++.+.+.-....+.+..+-.. --=|+-.+++.|||..-|
T Consensus 235 vSgl~~~~~~~~---------LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipq-aEGiamDd~g~lYIvSEP 303 (316)
T COG3204 235 VSGLEFNAITNS---------LLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQ-AEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cccceecCCCCc---------EEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCC-cceeEECCCCCEEEEecC
Confidence 788999987774 555555666666666665555555443222222222100 122334455667766543
No 372
>PHA02790 Kelch-like protein; Provisional
Probab=93.59 E-value=6.7 Score=37.10 Aligned_cols=111 Identities=7% Similarity=-0.060 Sum_probs=52.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC--CcEEEEEccCceeeeeecc
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS--GSLHVLSSAMQVLLSVDEN 110 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d--g~v~v~~~~~~~~~~~~~~ 110 (343)
++.+++.|+.++......++.++...+. +..+..++.+-.-.++...++.+.+.|+.+ ..+..|+...+.-......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 4566788887643222234556654322 222333332221122222366777777754 3567777653322222221
Q ss_pred CCccccCeEEEEecCCEEEEEeCCC---cEEEEECCCC
Q 019258 111 SGFHVGPISGVDLTGSECVSVGEDG---RVNLVSVIGG 145 (343)
Q Consensus 111 ~~~h~~~v~~~~~~~~~~~s~s~dg---~v~~wd~~~~ 145 (343)
. ............+...+.||.++ .+..||.+++
T Consensus 350 ~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 350 L-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred C-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 1 11111122333377777777654 4667887765
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.28 E-value=7.6 Score=36.81 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCc---cccCe--EEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGF---HVGPI--SGVDLTG-SECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~---h~~~v--~~~~~~~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
++.++.++.++.+..+|..+++.+-....... ....+ ..+...+ ..++.++.+|.|.-+|.++++..-+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 56777888889999999875543311111000 00111 1122334 788888999999999999986444332211
Q ss_pred CccceEEEEeCC---CCEEEEEe---------CCCcEEEEEccccCCCCCeeEEecccCCCCCc------------c-cC
Q 019258 156 GLVGFNCVKWAS---PTEFVTGG---------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA------------S-GM 210 (343)
Q Consensus 156 ~~~~v~~~~~~~---~~~l~t~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~-~~ 210 (343)
....-..+.-.| ...++.++ .++.+..+|..+ ++.+.++.......... . ..
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET---GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC---CceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 100001122222 34555554 367888889888 77766654321100000 0 00
Q ss_pred e-EEEEEcCCCCeEEEEEecCC------------------cEEEEEccCCceeeeee
Q 019258 211 I-HSVDIHPSRKHTCLAGGSSG------------------TVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 211 i-~~v~~~p~~~~~~~sg~~dg------------------~v~iwd~~~~~~~~~~~ 248 (343)
+ .+.++++.+. +++.++.++ .|.-+|+++++....+.
T Consensus 218 vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 218 SWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred ccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1 1234444443 445666665 79999999888777664
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.24 E-value=10 Score=38.20 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=47.3
Q ss_pred cccceeeEEecCC--CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC---CCeeEEEcc-CCCeEEEEcC
Q 019258 17 QSKYIDAVRWLPP--LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP---TRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 17 ~~~~i~~v~w~p~--~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~---~~v~~v~~~-~~~~l~~~s~ 90 (343)
....|.|+..+|. .+...++++.|.|+.. ...+--+++. ...+...+.-+ -.|.-..|- +..+|+++..
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~----~~~l~~~pd~-~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg 603 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDI----SMILTFLPDL-ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG 603 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecce----EEEEEECCCc-ceeeeeccCCCccchheeeEEeeccceEEEEEcC
Confidence 4467999999995 2223468999999865 2334444331 11112222222 223333333 5788999999
Q ss_pred CCcEEEEEcc
Q 019258 91 SGSLHVLSSA 100 (343)
Q Consensus 91 dg~v~v~~~~ 100 (343)
||.+.-|.+.
T Consensus 604 dG~l~~fv~d 613 (1096)
T KOG1897|consen 604 DGALLYFVLD 613 (1096)
T ss_pred CceEEEEEEE
Confidence 9999877664
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.16 E-value=4.9 Score=34.31 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=103.0
Q ss_pred cccCCccc--ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCe--eEEEccCCCeEEE
Q 019258 12 VHRFPQSK--YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRI--SSLSTSHQSLVAA 87 (343)
Q Consensus 12 ~~~~~~~~--~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~l~~ 87 (343)
+.++||+. ..-.+.+.+ ++.++-+.+.- ++.+|+.+++.... .......+... -.+...++.+...
T Consensus 36 v~~ypHd~~aFTQGL~~~~----~g~LyESTG~y---G~S~l~~~d~~tg~---~~~~~~l~~~~FgEGit~~~d~l~qL 105 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLD----DGTLYESTGLY---GQSSLRKVDLETGK---VLQSVPLPPRYFGEGITILGDKLYQL 105 (264)
T ss_dssp EEEEE--TT-EEEEEEEEE----TTEEEEEECST---TEEEEEEEETTTSS---EEEEEE-TTT--EEEEEEETTEEEEE
T ss_pred EEECCCCCcccCccEEecC----CCEEEEeCCCC---CcEEEEEEECCCCc---EEEEEECCccccceeEEEECCEEEEE
Confidence 44445443 234445544 56666655443 34568888885532 22222222222 2344445556666
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~~ 164 (343)
.-.++...+||..+.+.+..... .+.=..++..++.++.......+..+|..+.+....+...... ..+.-+.
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-----SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EecCCeEEEEccccceEEEEEec----CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 66789999999986655544432 2455777777777777777778999998775433333221111 1355566
Q ss_pred eCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecc--------cCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 165 WASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN--------FGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 165 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
|..+...+-.=....|..-|..+ ++....+... ...+.....-.+.|+++|....++++|
T Consensus 182 ~i~G~IyANVW~td~I~~Idp~t---G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 YINGKIYANVWQTDRIVRIDPET---GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTEEEEEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEcCEEEEEeCCCCeEEEEeCCC---CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 65544334333455555666655 4433332110 000000125699999999988888886
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.12 E-value=4 Score=39.30 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=63.7
Q ss_pred CCcEEEEEcccc-CCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 177 GYGLQWWDLRRA-GSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 177 d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
+++|.+.|.+.+ +.+..+..+.... ...+.++++|+|.++++++..+.+|.+.|+.+....+.-. +...+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~~~ 366 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPRDA 366 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCccce
Confidence 456778887651 0012222222111 4578899999999999999999999999998744211000 000000
Q ss_pred cccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 256 VTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 256 ~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
++-+. -...-...+|.+++. ...|...|..|--|+...
T Consensus 367 vvaevevGlGPLHTaFDg~G~----------aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPELGLGPLHTAFDGRGN----------AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeeccCCCcceEEECCCCC----------EEEeEeecceeEEEehHH
Confidence 00000 011224677888765 577888899999998543
No 377
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.94 E-value=5.7 Score=36.82 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=74.7
Q ss_pred ceEEEEeCC-CCEEEEEeC---C-CcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 159 GFNCVKWAS-PTEFVTGGF---G-YGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~---d-~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.+..-+|++ ...++.... . ..+.++|+.. ++. +.++. +.-..-+|+|+|+.++++...||
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~---g~~~~i~~~~----------g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT---GKRPVILNFN----------GNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccC---CccceeeccC----------CccCCccCCCCCCEEEEEECCCC
Confidence 466667777 444333322 2 4588899987 332 22333 33446689999999999988888
Q ss_pred c--EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe--EEEEecCCCccc
Q 019258 232 T--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--LAVVEQGEEPFE 307 (343)
Q Consensus 232 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--i~~~~~~~~~~~ 307 (343)
. |++.|+.....+. +. .-.+.-..=.|+|++.. .+++.+..|. |++.+.......
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt-----------~~~gi~~~Ps~spdG~~---------ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LT-----------NGFGINTSPSWSPDGSK---------IVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccEEEEcCCCCccee-cc-----------cCCccccCccCCCCCCE---------EEEEeCCCCCcceEEECCCCCcee
Confidence 7 5666777655333 21 01111225568899884 3344444555 444444332222
Q ss_pred ccccc-cccceeeecCCCCCeeEEc
Q 019258 308 LLAEP-CAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 308 ~~~~~-~~i~s~~~~~~~~~~l~~~ 331 (343)
.+... ..-..-.++|+....++++
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEe
Confidence 23222 1111445667443444444
No 378
>PHA02713 hypothetical protein; Provisional
Probab=92.88 E-value=2.2 Score=41.10 Aligned_cols=152 Identities=4% Similarity=-0.104 Sum_probs=74.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC--------------------
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-------------------- 92 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-------------------- 92 (343)
++...+.|+.++.....+++.|+...+. +..+..++.+-.-.++.-.++.+++.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4567777877654322346778775432 3333333332221222222577777777543
Q ss_pred ---cEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCC------cEEEEECCC-CceEEEEEcCCCccceEE
Q 019258 93 ---SLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDG------RVNLVSVIG-GGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 93 ---~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg------~v~~wd~~~-~~~~~~~~~~~~~~~v~~ 162 (343)
.+..||...++-..+....... .....+...+...+.||.++ .+..||.++ .+ -.....-.......+
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccce
Confidence 3666776544322222211111 11122333367777777542 356788876 42 221111111101223
Q ss_pred EEeCCCCEEEEEeCCC--cEEEEEccc
Q 019258 163 VKWASPTEFVTGGFGY--GLQWWDLRR 187 (343)
Q Consensus 163 ~~~~~~~~l~t~~~d~--~i~iwd~~~ 187 (343)
+....+...+.||.++ .+..||..+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCccc
Confidence 3333467888888888 667777765
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.68 E-value=9.3 Score=36.22 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=85.4
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccc---cCe-EEEEecCCEEEEEe---------CCCcEEEEECCCCceEE
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHV---GPI-SGVDLTGSECVSVG---------EDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~---~~v-~~~~~~~~~~~s~s---------~dg~v~~wd~~~~~~~~ 149 (343)
+.++.++.+|.|..+|..+++.+-..... .+. ..+ .+..+.+..++.++ .+|.+...|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 78888999999999998866544222111 110 001 11112244444443 46788999998886443
Q ss_pred EEEcCCCc------------------cce-EEEEeCC-CCEEEEEeCCC------------------cEEEEEccccCCC
Q 019258 150 RVYDGNGL------------------VGF-NCVKWAS-PTEFVTGGFGY------------------GLQWWDLRRAGSG 191 (343)
Q Consensus 150 ~~~~~~~~------------------~~v-~~~~~~~-~~~l~t~~~d~------------------~i~iwd~~~~~~~ 191 (343)
+....... ..+ ....+.+ ...++.++.++ .|.-.|..+ +
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t---G 266 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT---G 266 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC---C
Confidence 33211110 001 1123333 45677776554 688888888 7
Q ss_pred CCeeEEecccCCC---CCccc-CeEEEE-EcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 192 GPVLQFKGNFGSQ---GKASG-MIHSVD-IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 192 ~~~~~~~~~~~~~---~~~~~-~i~~v~-~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+...++....... ..... .+..+. .+-....+++.++.+|.+...|.++++.....
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 7766654221000 00000 111111 11111235678889999999999998766554
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.32 E-value=6.3 Score=38.22 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=62.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEcc-----ccCC-CCCe
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLR-----RAGS-GGPV 194 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~-----~~~~-~~~~ 194 (343)
++..+.-+....+.+||.+.+.. ....+...+ .|.++.|.. ++.+++.|..+.|.++--. .+.+ -.++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~--~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDD--PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCC--ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 33333334455789999988631 112222233 699999976 7789999999999998542 1011 1233
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.++.-... .+.+|....|.++|..+ +|+ +..+.++|-
T Consensus 119 ~~i~i~~~----T~h~Igds~Wl~~G~Lv--V~s-GNqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSH----TPHPIGDSIWLKDGTLV--VGS-GNQLFVFDK 155 (631)
T ss_pred EEEEeecC----CCCCccceeEecCCeEE--EEe-CCEEEEECC
Confidence 33322111 11568999999987533 333 346888874
No 381
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.22 E-value=11 Score=36.07 Aligned_cols=113 Identities=16% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCC-ccccCe-------EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSG-FHVGPI-------SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~-~h~~~v-------~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
++.+++++.++.|.-+|..+++.+=...... ....+. ..+.+.+..++.++.|+.|.-.|.++++.+-+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 5678888888888888887655442211100 000010 12334466788888999999999999865443321
Q ss_pred CCCccceEEEEeCC---CCEEEEEeC------CCcEEEEEccccCCCCCeeEEe
Q 019258 154 GNGLVGFNCVKWAS---PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 154 ~~~~~~v~~~~~~~---~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.... .-..+.-.| .+.++.+.. ++.|.-+|.++ ++.+.++.
T Consensus 149 ~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T---G~~lW~~~ 198 (527)
T TIGR03075 149 GDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT---GKLVWRRY 198 (527)
T ss_pred cccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC---CceeEecc
Confidence 1110 011122223 455666543 68899999988 77666544
No 382
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.33 E-value=8.3 Score=32.75 Aligned_cols=106 Identities=15% Similarity=0.038 Sum_probs=65.3
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceE
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN 161 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 161 (343)
.+++.|+-.+.+..-|...+... |+..-...+.+-..- ++.++.|+..|.+.+.+.+++.+...... -+...+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~----We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI----WEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE----eehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccc
Confidence 55666666666666565533311 111111233333333 88899999999999999999854444332 2221343
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE
Q 019258 162 CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
... .+ ...+-.++.|++....|.++ ...+.+.
T Consensus 99 a~~-d~~~glIycgshd~~~yalD~~~---~~cVyks 131 (354)
T KOG4649|consen 99 AQC-DFDGGLIYCGSHDGNFYALDPKT---YGCVYKS 131 (354)
T ss_pred eEE-cCCCceEEEecCCCcEEEecccc---cceEEec
Confidence 333 34 77888899999999999988 5666553
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=9.4 Score=33.03 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEE-eCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSV-GEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~-s~dg~v~~wd~~~~ 145 (343)
+....++++.|+ +.+.|++....+.-.|+=..+++.+........| .--.+.+. ++.++.+ =.++.+.+..+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445569999999 7777888777776655543355555444433222 23455665 5555444 36777777766443
Q ss_pred ceEE-------EEEc-CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCe--eEEecccCCCCCcccCeEEE
Q 019258 146 GEFK-------RVYD-GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPV--LQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 146 ~~~~-------~~~~-~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v 214 (343)
.... .+-. .+...+.-.++|.+ ...|..+-..+=+.||.... ....+ .....+...++.--..+.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~--~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ--SPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec--CCcccccccccCcccccceEeeccccc
Confidence 2111 1111 12234789999999 78888888888888888765 11111 11111111111111448889
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
.|++...++++-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 99987778888888999988888764
No 384
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.33 E-value=13 Score=33.43 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=107.2
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC--cEEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG--SLHVL 97 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg--~v~v~ 97 (343)
-..+.|+| +++.||....|.. .++.+.+..-.... ..-..+..+.+- .+. .+. .+.|+
T Consensus 103 ~~~~~WSp----d~~~la~~~~d~~----~v~~~~~~~~~~~~-----~~yp~~~~~~YPk~G~------~np~v~l~v~ 163 (353)
T PF00930_consen 103 RSAVWWSP----DSKYLAFLRFDER----EVPEYPLPDYSPPD-----SQYPEVESIRYPKAGD------PNPRVSLFVV 163 (353)
T ss_dssp SBSEEE-T----TSSEEEEEEEE-T----TS-EEEEEEESSST-----ESS-EEEEEE--BTTS---------EEEEEEE
T ss_pred ccceEECC----CCCEEEEEEECCc----CCceEEeeccCCcc-----ccCCcccccccCCCCC------cCCceEEEEE
Confidence 46899999 8999999988854 13344331100000 011245566655 221 112 35566
Q ss_pred EccCceee--eeeccCCccccCeEEEEec--CCEEEEE--eCCC---cEEEEECCCCceEEEEEcCCCc--cceEEEEeC
Q 019258 98 SSAMQVLL--SVDENSGFHVGPISGVDLT--GSECVSV--GEDG---RVNLVSVIGGGEFKRVYDGNGL--VGFNCVKWA 166 (343)
Q Consensus 98 ~~~~~~~~--~~~~~~~~h~~~v~~~~~~--~~~~~s~--s~dg---~v~~wd~~~~~~~~~~~~~~~~--~~v~~~~~~ 166 (343)
++..++.. ........-..-+..+.|. +..++.. .++. .+.+.|..++..-....+.... .......+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 164 DLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL 243 (353)
T ss_dssp ESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-
T ss_pred ECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc
Confidence 77644322 2221001123467888887 4424433 3333 3556677665321111111111 012344444
Q ss_pred -C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE-EEEcCCCCeEEEEEecCC----cEEEEEc
Q 019258 167 -S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS-VDIHPSRKHTCLAGGSSG----TVFAWDL 238 (343)
Q Consensus 167 -~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~p~~~~~~~sg~~dg----~v~iwd~ 238 (343)
+ ...+.....+|.-+|+-+.. .+..+..+.... -.|.. +.+++++..++.++..++ .++.-++
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~--~~~~~~~lT~G~-------~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDL--DGGKPRQLTSGD-------WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEET--TSSEEEESS-SS-------S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcc--cccceeccccCc-------eeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 4 34444445678777776655 233344443221 33644 678888888887877633 5666666
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
..+..+..+.. ..+.-..+.|+|++.. .+.+|+.-
T Consensus 315 ~~~~~~~~LT~-----------~~~~~~~~~~Spdg~y---------~v~~~s~~ 349 (353)
T PF00930_consen 315 DSGGEPKCLTC-----------EDGDHYSASFSPDGKY---------YVDTYSGP 349 (353)
T ss_dssp TETTEEEESST-----------TSSTTEEEEE-TTSSE---------EEEEEESS
T ss_pred CCCCCeEeccC-----------CCCCceEEEECCCCCE---------EEEEEcCC
Confidence 62244444431 1111168999999886 66677654
No 385
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.17 E-value=13 Score=33.00 Aligned_cols=112 Identities=10% Similarity=-0.061 Sum_probs=51.0
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCCCCCCeeEEEccCCCeEEEEcC-----CCcEEEEEccCceee
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWTPPTRISSLSTSHQSLVAASTL-----SGSLHVLSSAMQVLL 105 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~l~~~s~-----dg~v~v~~~~~~~~~ 105 (343)
+.+++.|+.+.......++.+++..... ...+..++.+-.-.++...++.+++.|+. ...+..||....+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566666665432222455566544321 12233333322212233335666666664 235677777644322
Q ss_pred eeeccCCccccCeEEEEecCCEEEEEeCCCc----EEEEECCCC
Q 019258 106 SVDENSGFHVGPISGVDLTGSECVSVGEDGR----VNLVSVIGG 145 (343)
Q Consensus 106 ~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~----v~~wd~~~~ 145 (343)
.+......-......+...++.++.|+.++. +..||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2211110001111222334777777876643 457888765
No 386
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.93 E-value=13 Score=32.61 Aligned_cols=226 Identities=13% Similarity=0.016 Sum_probs=108.6
Q ss_pred CeEEEEcCCC-cEEEEEccCceeeeeec-cCCccccCeEEEEecCCEEEEEe-----CCCcEEEEECCCCceEEEEEcCC
Q 019258 83 SLVAASTLSG-SLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLTGSECVSVG-----EDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 83 ~~l~~~s~dg-~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~s~s-----~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
..++.+-.-| ...+||....+...... ...-|...--.++-.|+.|++.= ..|.|-+||...+-.-...+..+
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 3344444433 33567776554443322 12223332233333377777763 45889999998432233333334
Q ss_pred CccceEEEEeCC-CCEEEEEe------------------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 156 GLVGFNCVKWAS-PTEFVTGG------------------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~~l~t~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.- .-..+.+.| +..|+.+- .+-.+.+-|.++ ++.+.+..... ..+.-.|.-+++
T Consensus 98 GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s---G~ll~q~~Lp~---~~~~lSiRHLa~ 170 (305)
T PF07433_consen 98 GI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS---GALLEQVELPP---DLHQLSIRHLAV 170 (305)
T ss_pred Cc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC---CceeeeeecCc---cccccceeeEEe
Confidence 33 566677777 43555442 122233344444 44444432211 111145888888
Q ss_pred cCCCCeEEEEEec-CCc-------EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 217 HPSRKHTCLAGGS-SGT-------VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 217 ~p~~~~~~~sg~~-dg~-------v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
.++|. ++.|.+ .|. |.+++... . .......... ...-.+.+=+|++++++.. ..+
T Consensus 171 ~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~---------ia~ 233 (305)
T PF07433_consen 171 DGDGT--VAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAPEEQ---WRRLNGYIGSIAADRDGRL---------IAV 233 (305)
T ss_pred cCCCc--EEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCChHH---HHhhCCceEEEEEeCCCCE---------EEE
Confidence 88764 333332 111 22332221 1 1111000000 0123467889999998874 456
Q ss_pred EEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC
Q 019258 289 FCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 289 s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
|+-.-|.+.+|+.......-...-..+..++..+ + .++++++..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~-~-~f~~ssG~G 277 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTD-D-GFLVSSGQG 277 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCceeeeeecC-C-ceEEeCCCc
Confidence 6666778999987544322122212233444443 2 466666643
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.65 E-value=12 Score=31.98 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=98.5
Q ss_pred CccCCCCCC--eeEEEcc-CCCeEEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEE
Q 019258 65 HSQWTPPTR--ISSLSTS-HQSLVAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVN 138 (343)
Q Consensus 65 ~~~~~~~~~--v~~v~~~-~~~~l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~ 138 (343)
+..++|... -..+.|. ++.++-+.+.-| .|+.+++.+++............+ -.+... +..+.-.-.++...
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--EGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--EGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E--EEEEEETTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc--eeEEEECCEEEEEEecCCeEE
Confidence 444555433 4577884 666666666666 777788776554433332211222 334444 44555677889999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
+||..+-+... .+.-.. .=..++.. +..|+......+|.++|... .+...++....+.+.. ..++-+.+..
T Consensus 114 ~yd~~tl~~~~-~~~y~~--EGWGLt~d-g~~Li~SDGS~~L~~~dP~~---f~~~~~i~V~~~g~pv--~~LNELE~i~ 184 (264)
T PF05096_consen 114 VYDPNTLKKIG-TFPYPG--EGWGLTSD-GKRLIMSDGSSRLYFLDPET---FKEVRTIQVTDNGRPV--SNLNELEYIN 184 (264)
T ss_dssp EEETTTTEEEE-EEE-SS--S--EEEEC-SSCEEEE-SSSEEEEE-TTT----SEEEEEE-EETTEE-----EEEEEEET
T ss_pred EEccccceEEE-EEecCC--cceEEEcC-CCEEEEECCccceEEECCcc---cceEEEEEEEECCEEC--CCcEeEEEEc
Confidence 99999875443 333222 24555533 45566666688999999877 5555555544321211 3355565552
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeee--ecCCCC--cccccCCccccEEEEEEeecCCC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVL--SGVGTG--EAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~--~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
| .+.|=--..-.|...|..++...-.+ .++... .......-.+-.+.|+|+|....
T Consensus 185 -G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 185 -G-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp -T-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred -C-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 2 34444444445555555554321111 000000 00000112456899999998875
No 388
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=2.9 Score=42.57 Aligned_cols=123 Identities=9% Similarity=-0.049 Sum_probs=73.7
Q ss_pred cCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 209 GMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
-++..+...++.....+. .+.+-.|..||++.-...............+.........++.|+|.-+. ..
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~---------n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL---------NS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc---------hh
Confidence 456666666665433333 33344689999987433221110000000000112234578899998775 77
Q ss_pred EEEecCCeEEEEecCCCcccccc--cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGEEPFELLA--EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~~~~~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.+..|+.|++.........+.. -.....++.|+| .|..++.|-.+|.+.-|.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEee
Confidence 88999999988665433322222 235689999999 679999999889887664
No 389
>PHA03098 kelch-like protein; Provisional
Probab=89.40 E-value=16 Score=34.98 Aligned_cols=150 Identities=9% Similarity=0.022 Sum_probs=68.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC------CcEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS------GSLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d------g~v~v~~~~~~~~~~ 106 (343)
++.+++.|+.++....-.++.|+...+. +.....++.+..-.++...++..++.|+.+ ..+..||..+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 4566777777643222345677765432 333333333322222332356666776632 357788876433222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCC--------cEEEEECCCCceEEEEEc--CCCccceEEEEeCCCCEEEEEeC
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDG--------RVNLVSVIGGGEFKRVYD--GNGLVGFNCVKWASPTEFVTGGF 176 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg--------~v~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~t~~~ 176 (343)
......... ....+...+..++.||.+. .+..||..+++ -...-. .... ....+.+ .+..++.||.
T Consensus 421 ~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~ 496 (534)
T PHA03098 421 GSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRI-NASLCIF-NNKIYVVGGD 496 (534)
T ss_pred cCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccc-cceEEEE-CCEEEEEcCC
Confidence 211111111 1122333366666666432 37788887653 222111 0111 1112222 3455666665
Q ss_pred C-----CcEEEEEccc
Q 019258 177 G-----YGLQWWDLRR 187 (343)
Q Consensus 177 d-----~~i~iwd~~~ 187 (343)
+ +.+..||...
T Consensus 497 ~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 497 KYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcccceeEEEeCCC
Confidence 3 4677777755
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.25 E-value=17 Score=35.40 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=56.3
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee--cCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC--HTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++.+...++.|||.+......... -...+.|.++.|.. +++ .+++.+-...|.++-+.
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~----------f~~~~~I~dLDWtst~d~q----------siLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEES----------FSEDDPIRDLDWTSTPDGQ----------SILAVGFPHHVLLYTQL 104 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeee----------ecCCCceeeceeeecCCCC----------EEEEEEcCcEEEEEEcc
Confidence 333444569999998765333322 12368899999964 444 57888889988886542
Q ss_pred C------Cccccc--------ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 E------EPFELL--------AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~------~~~~~~--------~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. .+.+.. ..+.+|.+..|-+ +|..+|.++ + -++|+.+
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG-N-qlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG-N-QLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC-C-EEEEECC
Confidence 1 111110 1145788888887 444444443 3 4666654
No 391
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.40 E-value=26 Score=34.06 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred CCCcEEEEECCC----CceEEEEEcCCCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccCCCCC------------e
Q 019258 133 EDGRVNLVSVIG----GGEFKRVYDGNGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAGSGGP------------V 194 (343)
Q Consensus 133 ~dg~v~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~------------~ 194 (343)
.++.|.+.|..+ +..+...+.-.. ....+.++| +.++ +++..+.++.+.|+.. .+. .
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k---~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRK---LDDLFDGKIKPRDAVV 368 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChh---hhhhhhccCCccceEE
Confidence 367899999987 323444443333 488899999 5554 4455599999999977 332 1
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
.+.+. +. +|. -.+|.++|. .+.+-.-|..|..||+..
T Consensus 369 aevev-----Gl--GPL-HTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-----GL--GPL-HTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-----CC--Ccc-eEEECCCCC-EEEeEeecceeEEEehHH
Confidence 12221 11 333 346788774 667788899999999865
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.17 E-value=1.7 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.6
Q ss_pred ceEEEEeCC--C--CEEEEEeCCCcEEEEEccc
Q 019258 159 GFNCVKWAS--P--TEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 159 ~v~~~~~~~--~--~~l~t~~~d~~i~iwd~~~ 187 (343)
.+.+++|+| . .+|+-+-.-+.|.++|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 589999997 3 5788888899999999995
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.14 E-value=16 Score=31.38 Aligned_cols=173 Identities=10% Similarity=0.067 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE------
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF------ 197 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~------ 197 (343)
++.++.|..+| +.+++........+..... .|..+...+ -+.++.- .|+++.++++.. -.+....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~---~I~ql~vl~~~~~llvL-sd~~l~~~~L~~---l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLS---SITQLSVLPELNLLLVL-SDGQLYVYDLDS---LEPVSTSAPLAFP 78 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecc---eEEEEEEecccCEEEEE-cCCccEEEEchh---hcccccccccccc
Confidence 77888998888 9999984432344443222 388888888 4444444 469999999976 2222210
Q ss_pred eccc-CCCCCcccCeEEEE--EcCCCCeEEEEEecCCcEEEEEccCCce----eeeeecCCCCcccccCCccccEEEEEE
Q 019258 198 KGNF-GSQGKASGMIHSVD--IHPSRKHTCLAGGSSGTVFAWDLRWQQQ----SIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 198 ~~~~-~~~~~~~~~i~~v~--~~p~~~~~~~sg~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
+... ...-.....+...+ -.+.+...++ .....+|.+|....... ..... .-...+..++|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~-----------~lp~~~~~i~~ 146 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEI-----------SLPDPPSSIAF 146 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEE-----------EcCCCcEEEEE
Confidence 0000 00000002244444 2233333433 44456898888765321 11211 13477889999
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccc-------------cccccceeeecCCCCCeeEEcc
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLA-------------EPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~-------------~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+ . .++.+..++ ..+.+.. ....++.. ...++..+.+.. +.+|+|-.
T Consensus 147 ~~--~----------~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~Ll~~~ 207 (275)
T PF00780_consen 147 LG--N----------KICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD--NEFLLCYD 207 (275)
T ss_pred eC--C----------EEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC--ceEEEEec
Confidence 83 2 456665555 3444443 22233321 124566777764 37888753
No 394
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.11 E-value=13 Score=30.48 Aligned_cols=182 Identities=8% Similarity=0.012 Sum_probs=83.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeec
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASL--TPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~ 109 (343)
+++++.+.+.- +...|+.|++...... ..+.. .-+...++.+ .+......-.+|.-..||..+.+++-...
T Consensus 55 ~g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeec---cceEEEEEeccceeEEEChHHhhhhcccc
Confidence 45666665443 3346889999642211 01110 0011112222 23334444567777788877544432222
Q ss_pred cCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCc---eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 019258 110 NSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGG---EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLR 186 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~ 186 (343)
..+.=..+...++.++.+....++..-|.++-. .+.-..++..-..+.-+.|-.+...+-.=.+..|..-|..
T Consensus 129 ----y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 129 ----YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ----cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCC
Confidence 234456666665556666555566666655422 1222222221112344444433333322223333333443
Q ss_pred ccCCCCCeeEEeccc-----CCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 187 RAGSGGPVLQFKGNF-----GSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
+ ++.+..+.... .....+..-.+.|++.|++..++++|
T Consensus 205 s---GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 S---GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred C---CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3 33222221110 00111124578999999887777775
No 395
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=23 Score=32.30 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=75.0
Q ss_pred eEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEE
Q 019258 160 FNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFA 235 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~i 235 (343)
-..+..++ ...+++...++.|.+.|... .........- ..-..+++.|++..+.++-. .++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc---cceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEE
Confidence 44566666 44666666789999999766 3333333211 23668999999988887766 4788999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|-.+........ .-..+ ..+++.|++.. ..++-+.+++|.+.+...
T Consensus 145 id~~t~~~~~~~~-----------vG~~P-~~~a~~p~g~~---------vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 145 IDAATNKVTATIP-----------VGNTP-TGVAVDPDGNK---------VYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EeCCCCeEEEEEe-----------cCCCc-ceEEECCCCCe---------EEEEecCCCeEEEEeCCC
Confidence 9987754444422 11234 88999999884 344446888999988543
No 396
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.02 E-value=31 Score=33.57 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=84.6
Q ss_pred CeEEEEec--CCEEEEEe------CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCc-EEEEEcc
Q 019258 117 PISGVDLT--GSECVSVG------EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYG-LQWWDLR 186 (343)
Q Consensus 117 ~v~~~~~~--~~~~~s~s------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~-i~iwd~~ 186 (343)
.+.+.+++ ++.++..- .|..-.+|-...+.....+.... ....-.|+| +..+.+...... +++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~---~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH---SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC---CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 45666666 66665544 34444455332222233333322 367778888 566666654322 2222211
Q ss_pred ccCCCCCeeEEecccCCCC-CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc-cCCceeeeeecCCCCcccccCCcccc
Q 019258 187 RAGSGGPVLQFKGNFGSQG-KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL-RWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
. ...+..+....+... ...+.|..+.|+|+|..+.+.. +|+|++=-+ |.......+.... ... ..-...
T Consensus 428 ~---~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~--~l~--~~l~~~ 498 (591)
T PRK13616 428 A---TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPR--EVG--PGLGDT 498 (591)
T ss_pred C---CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccE--Eee--cccCCc
Confidence 1 112221111000000 0015699999999998776654 477776322 1111111220000 000 122334
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCC--eEEEEecCCCccccccc---ccccceeeecC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDG--ILAVVEQGEEPFELLAE---PCAINSFDIDP 322 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--~i~~~~~~~~~~~~~~~---~~~i~s~~~~~ 322 (343)
+.++.|.+++. |+.+..++ .++..+.+.....++.. ..++.+++-++
T Consensus 499 ~~~l~W~~~~~-----------L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 499 AVSLDWRTGDS-----------LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred cccceEecCCE-----------EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 57899998765 33333333 35554544333333222 35666777665
No 397
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.50 E-value=12 Score=35.11 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=71.7
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--------CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 128 CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 128 ~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+..++....+.-.|++.++ +...+..++. + -+.|.| ...-+.|-++..|---|.|. .+..+.....
T Consensus 483 ~~dg~~~~kLykmDIErGk-vveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~--~gNKi~v~es 556 (776)
T COG5167 483 YLDGGERDKLYKMDIERGK-VVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA--RGNKIKVVES 556 (776)
T ss_pred EecCCCcccceeeecccce-eeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccc--cCCceeeeee
Confidence 3456666677777888884 6666666665 3 455555 12234455566666678887 4444433221
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
..... . ....|..-..+ ..+|+|+..|.|++||- -+......+ ++....|..|....++..
T Consensus 557 KdY~t-K--n~Fss~~tTes--GyIa~as~kGDirLyDR-ig~rAKtal----------P~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 557 KDYKT-K--NKFSSGMTTES--GYIAAASRKGDIRLYDR-IGKRAKTAL----------PGLGDAIKHIDVTANGKH 617 (776)
T ss_pred hhccc-c--ccccccccccC--ceEEEecCCCceeeehh-hcchhhhcC----------cccccceeeeEeecCCcE
Confidence 11000 0 11223333333 35688999999999993 222222222 445677888888887774
No 398
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.13 E-value=7 Score=32.58 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=42.4
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE------EcC------CCccceEEEEeCC-CCEEEEEeCCCcEEEE
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV------YDG------NGLVGFNCVKWAS-PTEFVTGGFGYGLQWW 183 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~l~t~~~d~~i~iw 183 (343)
++..+...++++++...+|.+.+||+.+.+....- +.. .....|..+.... +..+++- .+|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEe
Confidence 55667777999999999999999999887532221 110 1112455555555 3334433 34556666
Q ss_pred Eccc
Q 019258 184 DLRR 187 (343)
Q Consensus 184 d~~~ 187 (343)
|...
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 6544
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.05 E-value=24 Score=31.20 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=57.1
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
..-+.|+|+|++..++++-+..+.|.-|++.....+..-. ...+......+.--.++...++. ++
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----~~~~~~~~~~G~PDG~~vDadG~-----------lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----RGFVDFDEEPGLPDGMAVDADGN-----------LW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----ceEEEccCCCCCCCceEEeCCCC-----------EE
Confidence 4467899999998888888888889988875311000000 00000011223333444444433 44
Q ss_pred EEecC-C-eEEEEecCCCcccccccc-cccceeeecCCCCCeeEEcc
Q 019258 289 FCSED-G-ILAVVEQGEEPFELLAEP-CAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 289 s~s~d-g-~i~~~~~~~~~~~~~~~~-~~i~s~~~~~~~~~~l~~~~ 332 (343)
++... | .|..++...+......-| ..+.++.+-+.+.+.|...+
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 33333 2 777777765444444445 55677777654334444333
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.15 E-value=14 Score=27.92 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=64.9
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccC-----CCCCeeEEecccCCCCCcccCeEEEEEcCC----CCeEEEEEecCCc
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAG-----SGGPVLQFKGNFGSQGKASGMIHSVDIHPS----RKHTCLAGGSSGT 232 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~----~~~~~~sg~~dg~ 232 (343)
-+|.. ...|+.++..++|.|++..... ...++..+... ..|++++-.|- ++.+|+.|+. -.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--------~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--------QEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC--------CceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 35555 5578888899999999876400 01223333221 45777765542 3566777665 58
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+..||..+...... +.-...|.++.+-.-+.. .. .++..+.+-.|.-+|.
T Consensus 75 llaYDV~~N~d~Fy------------ke~~DGvn~i~~g~~~~~----~~---~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 75 LLAYDVENNSDLFY------------KEVPDGVNAIVIGKLGDI----PS---PLVIVGGNCSIQGFDY 124 (136)
T ss_pred EEEEEcccCchhhh------------hhCccceeEEEEEecCCC----CC---cEEEECceEEEEEeCC
Confidence 99999976543222 234577888887533221 00 4666666666666654
No 401
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=19 Score=33.29 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=74.8
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeee-ccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVD-ENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~-~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~ 144 (343)
....|+|.+++|+ +...|++--.+.+|.+++....+..... .........|.++.|. ...++.....| +-+|....
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence 3456799999999 8889999999999999988533332221 1112233468999998 77788777777 77777655
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCE-EEEEe-CCCcEEEEEccc
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTE-FVTGG-FGYGLQWWDLRR 187 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~t~~-~d~~i~iwd~~~ 187 (343)
.+...+....+.. .|.=..|.+ .+. +++.+ ..+++.-+.+++
T Consensus 142 ekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 142 EKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEEee
Confidence 4444455444444 565555665 332 33333 355555555554
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.98 E-value=44 Score=33.38 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=50.8
Q ss_pred CeEEEEec--CCEEEEEeCCCcEEEEECCC----------Cc---eEEEE------EcCCCccceEEEEeCC----CCEE
Q 019258 117 PISGVDLT--GSECVSVGEDGRVNLVSVIG----------GG---EFKRV------YDGNGLVGFNCVKWAS----PTEF 171 (343)
Q Consensus 117 ~v~~~~~~--~~~~~s~s~dg~v~~wd~~~----------~~---~~~~~------~~~~~~~~v~~~~~~~----~~~l 171 (343)
.|..+..+ |..++..|..| |.+..+.. ++ .++.. +.......|..+.|+| +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 57888888 88888888876 44444421 11 11111 1122234689999999 4678
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEE
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
+.=..|+++|+||+.. +..+...+
T Consensus 165 ~vLtsdn~lR~y~~~~--~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD--PQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCC--CCCCeEEE
Confidence 8899999999999976 44554443
No 403
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.75 E-value=28 Score=30.99 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCcEEEEEcc-Cceeeeee-ccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcC
Q 019258 81 HQSLVAASTLSGSLHVLSSA-MQVLLSVD-ENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDG 154 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~-~~~~~~~~-~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~ 154 (343)
.++.|.+-+.||.+.-..+. .+++.... +....-..++. .-.+. +..++-.+.+|.|+--|+.... .....+.-
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 45678899999999888887 33332111 11111122222 22222 5677778899999888887643 11111111
Q ss_pred CC---------ccceEEEEeCC-CCEEEEEeC--------CC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 155 NG---------LVGFNCVKWAS-PTEFVTGGF--------GY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 155 ~~---------~~~v~~~~~~~-~~~l~t~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
.. -....-+++++ .++|..--. |+ .|-++|+.+ .+.+.++... .++.+|
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t---~krv~Ri~l~--------~~~~Si 294 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT---HKRVARIPLE--------HPIDSI 294 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT---TEEEEEEEEE--------EEESEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC---CeEEEEEeCC--------CccceE
Confidence 00 01344566666 444443322 22 356667777 6667666532 457789
Q ss_pred EEcCCCCeEEEE-EecCCcEEEEEccCCceeeeee
Q 019258 215 DIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 215 ~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.++.+...+|.+ ...++.+.+||..+++.....-
T Consensus 295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 998776555544 4568999999999975554444
No 404
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.72 E-value=31 Score=31.37 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCEEEEEe-CCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 125 GSECVSVG-EDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 125 ~~~~~s~s-~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
|+.|+.++ .||. +.+.|+.++ ...++.+.... .......++ .+.++-......|+-.|+++
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~-~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATG-EITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT
T ss_pred CCEEEEEeccCCCcceEEEEcccC-EEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCc
Confidence 55555544 4554 555688888 46777665433 222334456 66666666677888889887
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.34 E-value=47 Score=33.19 Aligned_cols=89 Identities=18% Similarity=0.120 Sum_probs=51.3
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccc-cCC------CCC-e--eEEeccc-CCCCCcccCeEEEEEcCCC---CeE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRR-AGS------GGP-V--LQFKGNF-GSQGKASGMIHSVDIHPSR---KHT 223 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~-~~~------~~~-~--~~~~~~~-~~~~~~~~~i~~v~~~p~~---~~~ 223 (343)
.|..+..++ +..++..|. ..|.|-.+.. .+. +.. + ..+.... -........|..+.|||.+ .++
T Consensus 86 ~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 578888888 666666665 4455555532 000 111 1 1111000 0000112569999999985 444
Q ss_pred EEEEecCCcEEEEEccCCceeeeeec
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+.=++|+++++||+.....|.....
T Consensus 165 -~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 -VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred -EEEecCCEEEEEecCCCCCCeEEEE
Confidence 5668899999999988777666543
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.26 E-value=25 Score=34.71 Aligned_cols=113 Identities=8% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCcEEEEEccc-------c--CC--------CCCeeEEecccCCCCCcccCeEEEEEc--CCCCeEEEEEe
Q 019258 168 PTEFVTGGFGYGLQWWDLRR-------A--GS--------GGPVLQFKGNFGSQGKASGMIHSVDIH--PSRKHTCLAGG 228 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~-------~--~~--------~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~~~sg~ 228 (343)
...|+.+.+||.|.+|-++. . .. -+|...+.. .....+++++ .. ..++|+++
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v--------~~SaWGLdIh~~~~-~rlIAVSs 184 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV--------GASAWGLDIHDYKK-SRLIAVSS 184 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec--------CCceeEEEEEecCc-ceEEEEec
Confidence 66788999999999997631 0 00 001111111 1568899998 54 45778888
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
....|.+|-+........... ...|..-|.+|.|-++..... +. ..|++++-.|.+++|+-
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~--------s~~~~hNIP~VSFl~~~~d~~--G~--v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVP--------SHQHSHNIPNVSFLDDDLDPN--GH--VKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEecccccccccc--------ccccccCCCeeEeecCCCCCc--cc--eEEEEEeccCcEEEEEE
Confidence 878888886543211111100 023556788999998763211 11 16888999999988665
No 407
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.11 E-value=32 Score=31.00 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=123.7
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC----------------CCCeeEEEcc-
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP----------------PTRISSLSTS- 80 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~----------------~~~v~~v~~~- 80 (343)
...+....|+| +++.+|-.. +++ |++.++.... ...++.-+. -+.-.++-|+
T Consensus 42 ~~~~~~~~~sP----~g~~~~~v~-~~n-----ly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp 110 (353)
T PF00930_consen 42 PPKLQDAKWSP----DGKYIAFVR-DNN-----LYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP 110 (353)
T ss_dssp ETTBSEEEE-S----SSTEEEEEE-TTE-----EEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T
T ss_pred ccccccceeec----CCCeeEEEe-cCc-----eEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECC
Confidence 46799999999 788877664 333 6677764331 111111110 1223567788
Q ss_pred CCCeEEEEcC-CCcEEEEEccCceeeeeeccCCccc--cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-EEEc-
Q 019258 81 HQSLVAASTL-SGSLHVLSSAMQVLLSVDENSGFHV--GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK-RVYD- 153 (343)
Q Consensus 81 ~~~~l~~~s~-dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~-~~~~- 153 (343)
++..|+.... +..|+.+.+. .....+. ..+..+.+- |..-.. -.+.++|+.+++... ....
T Consensus 111 d~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 111 DSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HH
T ss_pred CCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccc
Confidence 6666655443 4455555443 1100000 122333322 222211 136678887764221 1110
Q ss_pred -CCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc-CCCCeEEE
Q 019258 154 -GNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH-PSRKHTCL 225 (343)
Q Consensus 154 -~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~~~ 225 (343)
......+..+.|.+ +..|+..-. ...+.+.|..+ +..-..+.... .+.- ..-....+. +++..++.
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t---g~~~~~~~e~~--~~Wv-~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST---GETRVVLEETS--DGWV-DVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---TTCEEEEEEES--SSSS-SSSSEEEE-TTTSSEEEE
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---CceeEEEEecC--Ccce-eeecccccccCCCCEEEE
Confidence 12222688899988 442443322 22355566655 33221122111 1000 112244544 66666666
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE-EEEeecCCCCcCCCCCccceEEEecCC----eEEEEe
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-VQYDCHTKSSNISSSRVLPAMFCSEDG----ILAVVE 300 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~~~~~~~l~s~s~dg----~i~~~~ 300 (343)
....||--.||-+.........+ ....-.|.. +.+++++.. ..+++..++ .|+..+
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~l----------T~G~~~V~~i~~~d~~~~~---------iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQL----------TSGDWEVTSILGWDEDNNR---------IYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEES----------S-SSS-EEEEEEEECTSSE---------EEEEESSGGTTSBEEEEEE
T ss_pred EEEcCCCcEEEEEcccccceecc----------ccCceeecccceEcCCCCE---------EEEEecCCCCCceEEEEEE
Confidence 66688865555433322222232 223445644 667777664 444555433 466666
Q ss_pred cC-CCcccccccccccc-eeeecCCCCCeeEEcc
Q 019258 301 QG-EEPFELLAEPCAIN-SFDIDPQNPSDVICSL 332 (343)
Q Consensus 301 ~~-~~~~~~~~~~~~i~-s~~~~~~~~~~l~~~~ 332 (343)
.. ....+.+....... ++.++| ++++++-..
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Sp-dg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSP-DGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-T-TSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECC-CCCEEEEEE
Confidence 66 55566666654444 999999 567766443
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.62 E-value=18 Score=35.69 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=67.3
Q ss_pred CeEEEEec----CCEEEEEeCCCcEEEEECCC-------C----ce------EEEEEcCCCccceEEEEeC--C-CCEEE
Q 019258 117 PISGVDLT----GSECVSVGEDGRVNLVSVIG-------G----GE------FKRVYDGNGLVGFNCVKWA--S-PTEFV 172 (343)
Q Consensus 117 ~v~~~~~~----~~~~~s~s~dg~v~~wd~~~-------~----~~------~~~~~~~~~~~~v~~~~~~--~-~~~l~ 172 (343)
.|+.+.+. .+.|+.|.+||.|.+|.+++ . .. +...+...-...+++++++ . .+.++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 35555444 56788899999999997622 0 00 0001111111258999998 6 55666
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--C---eEEEEEecCCcEEEEEc
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--K---HTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~---~~~~sg~~dg~v~iwd~ 238 (343)
.++....|.+|-... ..........+ +.. .-|.+|+|-++. + ..+++++=.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l--~~~r~~~~~s~---~~~--hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFAL--VDERFYHVPSH---QHS--HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEec--ccccccccccc---ccc--cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 666677888876654 11111011000 111 448899987754 2 25667788999999988
No 409
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.38 E-value=37 Score=31.23 Aligned_cols=198 Identities=13% Similarity=-0.011 Sum_probs=95.0
Q ss_pred eeeEEecCCCCCCCCeEEEE-eecCCCCCCceeeeeCCCCCCCCCCccCCCCCC-eeEEEcc-CCCeEEEEcCCC-----
Q 019258 21 IDAVRWLPPLSPLSKLAVLA-IYDTDADSPSLETHSISLPASLTPHSQWTPPTR-ISSLSTS-HQSLVAASTLSG----- 92 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~-s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~-v~~v~~~-~~~~l~~~s~dg----- 92 (343)
+...+++| +++++|-+ +..+. ....|++.|+..... +.. ..... ...+.|. ++..|+-...+.
T Consensus 126 ~~~~~~Sp----dg~~la~~~s~~G~-e~~~l~v~Dl~tg~~---l~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSP----DGKRLAYSLSDGGS-EWYTLRVFDLETGKF---LPD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETT----TSSEEEEEEEETTS-SEEEEEEEETTTTEE---EEE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECC----CCCEEEEEecCCCC-ceEEEEEEECCCCcC---cCC-cccccccceEEEeCCCCEEEEEEeCcccccc
Confidence 34567777 88888765 33332 234578999965321 111 11111 2238888 555555544332
Q ss_pred ------cEEEEEccCcee--eeeeccCCccccCeEEEEec--CCEEEE-EeCC---CcEEEEECCCC----ceEEEEEcC
Q 019258 93 ------SLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT--GSECVS-VGED---GRVNLVSVIGG----GEFKRVYDG 154 (343)
Q Consensus 93 ------~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~--~~~~~s-~s~d---g~v~~wd~~~~----~~~~~~~~~ 154 (343)
.|+.|++.+... ..+.+.. .+......+..+ +++++. .... ..+.+.|+..+ ..+..+...
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeec-CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 256666653321 2333221 111124566666 666553 3332 34677787763 234444433
Q ss_pred CCccceEEEEeCCCCEEEEEeC---CCcEEEEEccccCCCCC--ee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 155 NGLVGFNCVKWASPTEFVTGGF---GYGLQWWDLRRAGSGGP--VL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 155 ~~~~~v~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
... ....+.......++.... .+.|.-.++.. ... .. .+..+.. . ..+..+... +.++++.-.
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~---~~~~~~~~~l~~~~~-~----~~l~~~~~~--~~~Lvl~~~ 344 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD---PSPAEWWTVLIPEDE-D----VSLEDVSLF--KDYLVLSYR 344 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTS---TSGGGEEEEEE--SS-S----EEEEEEEEE--TTEEEEEEE
T ss_pred CCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccc---cccccceeEEcCCCC-c----eeEEEEEEE--CCEEEEEEE
Confidence 332 234444343333433322 56666677766 222 22 2332220 1 235555543 457888877
Q ss_pred cCCc--EEEEEcc
Q 019258 229 SSGT--VFAWDLR 239 (343)
Q Consensus 229 ~dg~--v~iwd~~ 239 (343)
.++. |+++|+.
T Consensus 345 ~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 345 ENGSSRLRVYDLD 357 (414)
T ss_dssp ETTEEEEEEEETT
T ss_pred ECCccEEEEEECC
Confidence 7775 7888887
No 410
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.35 E-value=22 Score=34.67 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=59.3
Q ss_pred cCeEEEEEcCCCCeEEEEEe-----cCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCC
Q 019258 209 GMIHSVDIHPSRKHTCLAGG-----SSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~-----~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
..+...+++|++..+.++.. .|. .+.+++... ....+. .+ .....-.|+|++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt----------~g--~~~t~PsWspDG~------ 409 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVL----------EG--HSLTRPSWSLDAD------ 409 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeee----------cC--CCCCCceECCCCC------
Confidence 34788999999987766652 233 455556532 222222 11 2367788999876
Q ss_pred CCccceEEEecC------------CeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEE
Q 019258 282 SRVLPAMFCSED------------GILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 282 ~~~~~l~s~s~d------------g~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.+++.+.. +.+++.......... .....|.++.|+| +|..++.-.+ +.+++
T Consensus 410 ----~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSp-DG~RiA~i~~-g~v~V 472 (591)
T PRK13616 410 ----AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSR-DGVRAAMIIG-GKVYL 472 (591)
T ss_pred ----ceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECC-CCCEEEEEEC-CEEEE
Confidence 45555432 333332221111111 2245799999999 6787777653 57776
No 411
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.04 E-value=60 Score=33.41 Aligned_cols=123 Identities=14% Similarity=0.031 Sum_probs=74.4
Q ss_pred CCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEE
Q 019258 60 ASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNL 139 (343)
Q Consensus 60 ~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~ 139 (343)
+..+++...+.++.|.+++--.+ .+++ +....+++|++...+.+...+.. .-...|+.+++.+..++.|...-.|.+
T Consensus 924 ~~lellh~T~~~~~v~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt~~~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen 924 DKLELLHKTEIPGPVGAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQTYGARIVVGDIQESVHF 1000 (1205)
T ss_pred ceeeeeeccCCCccceEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhc-cCceEEEEEeecceEEEEeeccceEEE
Confidence 34556777778888988886533 4444 45668999999865544333321 124578899999777777766556766
Q ss_pred EECCCC-ceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 019258 140 VSVIGG-GEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 140 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~ 187 (343)
+..+.. .+...+.+..-.-.++++.+...+.++.+..-|.+ |=+|.
T Consensus 1001 ~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi--~~vR~ 1047 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNI--AVVRI 1047 (1205)
T ss_pred EEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcE--EEEEC
Confidence 555442 23444443332225777777665556656555544 44444
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=82.06 E-value=47 Score=31.46 Aligned_cols=146 Identities=10% Similarity=-0.022 Sum_probs=65.2
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC---cEEEEEccCceeeeeec
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG---SLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg---~v~v~~~~~~~~~~~~~ 109 (343)
++...+.|+.++. .+++.|+... ..+.....++.+-.-.++.-.++.+.+.|+.++ .+..||...+.-.....
T Consensus 318 ~~~iYviGG~~~~---~sve~ydp~~-n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNP---TSVERWFHGD-AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCC---CceEEEECCC-CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 4456667766532 2456776533 223333344432222223323677777777653 46677766433222211
Q ss_pred cCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC-----CcEEEEE
Q 019258 110 NSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG-----YGLQWWD 184 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d-----~~i~iwd 184 (343)
.. ........+.+.+...+.| |.+..||.++++ -...........-.++....+...+.||.+ ..+..||
T Consensus 394 m~-~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~-W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 394 TY-YPHYKSCALVFGRRLFLVG---RNAEFYCESSNT-WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CC-CccccceEEEECCEEEEEC---CceEEecCCCCc-EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 11 1111112223335555555 357788887653 222211111001112222335566667654 3455566
Q ss_pred ccc
Q 019258 185 LRR 187 (343)
Q Consensus 185 ~~~ 187 (343)
...
T Consensus 469 ~~~ 471 (480)
T PHA02790 469 NRT 471 (480)
T ss_pred CCC
Confidence 544
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.48 E-value=49 Score=31.30 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=26.6
Q ss_pred ccEEEEEEeecC--CCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 263 SEVWEVQYDCHT--KSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 263 ~~v~~v~~~p~~--~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
-.+.+++|||+. .. .|..-+.|+.|++++...
T Consensus 166 ltl~Qa~WHP~S~~D~---------hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDP---------HLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeeeccccCCccCCc---------eEEEEecCcEEEEEecCC
Confidence 457889999987 44 788889999999998754
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.77 E-value=7.1 Score=39.98 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=64.0
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
-...++.|.|.. ...++....|.. |++..+... ......++....+++++|+ .+..++.|-.+|++.-|
T Consensus 156 vf~~~~~wnP~v---p~n~av~l~dls-----l~V~~~~~~--~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 156 VFQLKNVWNPLV---PLNSAVDLSDLS-----LRVKSTKQL--AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred cccccccccCCc---cchhhhhccccc-----hhhhhhhhh--hhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 457789999953 344555556643 445554221 1224446777889999999 89999999999999888
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSV 131 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~ 131 (343)
.-.-.....+.+-...-...|.+|.|. ...++..
T Consensus 226 ~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 226 EPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 665221111111111124689999998 4444433
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.74 E-value=22 Score=33.31 Aligned_cols=133 Identities=21% Similarity=0.225 Sum_probs=83.3
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-------eEEEEEecCCcEEEEEccCCce
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-------HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-------~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+..++.-..+.--|++. ++.+.....+. .+ -+.+.|... .. +.|-++..|.-.|.|....
T Consensus 483 ~~dg~~~~kLykmDIEr---GkvveeW~~~d--------dv-vVqy~p~~kf~qmt~eqt-lvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 483 YLDGGERDKLYKMDIER---GKVVEEWDLKD--------DV-VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred EecCCCcccceeeeccc---ceeeeEeecCC--------cc-eeecCCchhHHhcCccce-EEeecccceEEecccccCC
Confidence 44555566677777777 67666666543 13 556666421 22 3577788888889876443
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec-CCCccccccc-ccccceeeec
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ-GEEPFELLAE-PCAINSFDID 321 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~-~~~~~~~~~~-~~~i~s~~~~ 321 (343)
.+.... ....+..-.|+....+.++ +++.+|..|-|+++|. +....+.++. ...|--+++.
T Consensus 550 Ki~v~e-----------sKdY~tKn~Fss~~tTesG------yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 550 KIKVVE-----------SKDYKTKNKFSSGMTTESG------YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred ceeeee-----------ehhccccccccccccccCc------eEEEecCCCceeeehhhcchhhhcCcccccceeeeEee
Confidence 222210 1223333334432222122 8999999999999986 4445555555 5689999999
Q ss_pred CCCCCeeEEccCC
Q 019258 322 PQNPSDVICSLEW 334 (343)
Q Consensus 322 ~~~~~~l~~~~~~ 334 (343)
. +|.+++|.+..
T Consensus 613 a-~Gk~ilaTCk~ 624 (776)
T COG5167 613 A-NGKHILATCKN 624 (776)
T ss_pred c-CCcEEEEeecc
Confidence 8 78999999865
No 416
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.25 E-value=81 Score=33.07 Aligned_cols=159 Identities=9% Similarity=0.101 Sum_probs=90.7
Q ss_pred CCCCCCeeEEEcc----------CCCeEEEEcC---------CCcEEEEEccC-----ceeee---eec-cCCccccCeE
Q 019258 68 WTPPTRISSLSTS----------HQSLVAASTL---------SGSLHVLSSAM-----QVLLS---VDE-NSGFHVGPIS 119 (343)
Q Consensus 68 ~~~~~~v~~v~~~----------~~~~l~~~s~---------dg~v~v~~~~~-----~~~~~---~~~-~~~~h~~~v~ 119 (343)
++....|++++.. ...+|++|+. -|.++||++-+ +++.. +.. ....-+|+|.
T Consensus 1022 fq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVs 1101 (1366)
T KOG1896|consen 1022 FQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVS 1101 (1366)
T ss_pred cCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceE
Confidence 3444456666654 2457888864 58999999741 11111 000 1123567888
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 120 GVDLTGSECVSVGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 120 ~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
.++-...+|+++... .|.+|+++...... .+++. +++-.+... .+.++.|.--..|.+.-... ++. +
T Consensus 1102 avceV~G~l~~~~Gq-KI~v~~l~r~~~ligVaFiD~----~~yv~s~~~vknlIl~gDV~ksisfl~fqe----ep~-r 1171 (1366)
T KOG1896|consen 1102 AVCEVRGHLLSSQGQ-KIIVRKLDRDSELIGVAFIDL----PLYVHSMKVVKNLILAGDVMKSISFLGFQE----EPY-R 1171 (1366)
T ss_pred EEEEeccEEEEccCc-EEEEEEeccCCcceeeEEecc----ceeEEehhhhhhheehhhhhhceEEEEEcc----Cce-E
Confidence 887666666666554 49999995432232 33322 233333344 67788888788888766533 332 2
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeE-EEEEecCCcEEEEEc
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHT-CLAGGSSGTVFAWDL 238 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~-~~sg~~dg~v~iwd~ 238 (343)
+.... ++...-.++++.|--+|.++ |+++..||.|.+|-.
T Consensus 1172 lsL~s--rd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1172 LSLLS--RDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred EEEee--cCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 22111 11111347888887666544 566778999888854
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.23 E-value=0.45 Score=46.83 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=61.7
Q ss_pred CCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEcc--Cce---eeeeeccCCccccCeEEEEec----CC-EEEEEeCCCc
Q 019258 69 TPPTRISSLSTS--HQSLVAASTLSGSLHVLSSA--MQV---LLSVDENSGFHVGPISGVDLT----GS-ECVSVGEDGR 136 (343)
Q Consensus 69 ~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~--~~~---~~~~~~~~~~h~~~v~~~~~~----~~-~~~s~s~dg~ 136 (343)
.++|.|..+.|. +-..+. -.-|.+.||++. .++ .+.+... ......+.-+.|. .+ ++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~-~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPI-TPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeec-CcCCCCcceeeecccccccceeeeccCCCc
Confidence 356778888886 222222 334678899986 211 1111111 1122234555565 33 3344456778
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEE-----------eCC-CCEEEEEeCCCcEEEEEccc
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVK-----------WAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
+++...++.. +.++..|.. .+..++ .+| +..|+++..||.++.|.+--
T Consensus 207 i~lL~~~ra~--~~l~rsHs~-~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 207 IRLLNINRAL--RSLFRSHSQ-RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eeEeeechHH--HHHHHhcCC-CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 8887765532 122333332 233222 356 78899999999999998754
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.83 E-value=33 Score=28.34 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=62.8
Q ss_pred eeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC------cEEEE---EC
Q 019258 74 ISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG------RVNLV---SV 142 (343)
Q Consensus 74 v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg------~v~~w---d~ 142 (343)
...++....+.|+.+.....|.+|++..........+. --+.|..+.++ |+++++-=.+. .+++| +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 34444444367767688889999999833322223332 33788999998 99999874322 45554 32
Q ss_pred C--CCceEE-EE-------------------EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 143 I--GGGEFK-RV-------------------YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 143 ~--~~~~~~-~~-------------------~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
. ....+. ++ .+-+-.....+++..| .+.|+.|+ ++.+.+|-+..
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 2 111111 11 1111112466777777 44455444 67788888765
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.51 E-value=18 Score=30.16 Aligned_cols=74 Identities=23% Similarity=0.105 Sum_probs=43.8
Q ss_pred CCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeee----eccCC-------ccccCeEEEEec--CCEEEEEeCCCc
Q 019258 70 PPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSV----DENSG-------FHVGPISGVDLT--GSECVSVGEDGR 136 (343)
Q Consensus 70 ~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~----~~~~~-------~h~~~v~~~~~~--~~~~~s~s~dg~ 136 (343)
.+.++..+.. .+.+|++-+.+|.+++||+.....+.. ..... .....|..+.++ |.-+++-+ +|.
T Consensus 11 Lgs~~~~l~~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 11 LGSPVSFLEC-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred cCCceEEEEe-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 3445555554 478899999999999999985433211 11111 233456666665 55555544 356
Q ss_pred EEEEECCCC
Q 019258 137 VNLVSVIGG 145 (343)
Q Consensus 137 v~~wd~~~~ 145 (343)
...|+.+-+
T Consensus 89 ~y~y~~~L~ 97 (219)
T PF07569_consen 89 SYSYSPDLG 97 (219)
T ss_pred EEEeccccc
Confidence 677776544
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.46 E-value=53 Score=30.44 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=87.1
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCCCccCCCCCCeeEEEcc-----CCCeEEEEcCCCcEEEEEccC--c
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPAS--LTPHSQWTPPTRISSLSTS-----HQSLVAASTLSGSLHVLSSAM--Q 102 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~~~~~~~~~~v~~v~~~-----~~~~l~~~s~dg~v~v~~~~~--~ 102 (343)
.+.+.++.||+.+. |+|++-..... ..++-+.+...+|..+..- .+...++.---..+.||.+.. +
T Consensus 35 ~~~d~IivGS~~G~-----LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 35 SGSDKIIVGSYSGI-----LRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CCccEEEEeccccE-----EEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 45688999999874 78888744321 1344555667888888754 233344445667888888841 1
Q ss_pred e-----eeeeeccCCcccc--CeEEEEec-------CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 103 V-----LLSVDENSGFHVG--PISGVDLT-------GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 103 ~-----~~~~~~~~~~h~~--~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
. ...+... ..|.= ....+.+- .+.+..-+.||++.+++-+.- ...+.+.. ..-...+.|.+
T Consensus 110 ~~~~g~~~~L~~~-yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~--~llPgPl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELI-YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD--FLLPGPLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEE-EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC--CCCCcCeEEeec
Confidence 1 1111110 01221 12222221 246677899999999998764 23333322 21345577777
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 019258 168 PTEFVTGGFGYGLQWWDL 185 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~ 185 (343)
.+.|++++.+..+.-|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 788999999999999865
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.81 E-value=17 Score=33.44 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=34.9
Q ss_pred CeEEEEEcCC----------CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 210 MIHSVDIHPS----------RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 210 ~i~~v~~~p~----------~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
.|+++.+-|- +-.+++.|..+|.|++|... +...... ..|+.+|..|.+..
T Consensus 58 ~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q-----------~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 58 CITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQ-----------LLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEecc-chHHHHH-----------hcCccceEEEEecc
Confidence 4666665543 13678999999999999863 3332222 45888998888864
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.79 E-value=41 Score=28.30 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=57.2
Q ss_pred eeEEEcc--CCCeEEEEcCCCcEEEEEcc--Cce-----ee-eeeccC-Ccccc-CeEEEEecCCEEEEEeCCCcEEEEE
Q 019258 74 ISSLSTS--HQSLVAASTLSGSLHVLSSA--MQV-----LL-SVDENS-GFHVG-PISGVDLTGSECVSVGEDGRVNLVS 141 (343)
Q Consensus 74 v~~v~~~--~~~~l~~~s~dg~v~v~~~~--~~~-----~~-~~~~~~-~~h~~-~v~~~~~~~~~~~s~s~dg~v~~wd 141 (343)
-+.++|. ...+.+.-+.+-+|.-||.. .+. .+ .+.... ..|.- .=.+++-.|..++++-.-++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 4567777 33445566667788788854 211 11 111100 01111 1233444489999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWASP 168 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (343)
..+++....+.-+.. .+++++|-..
T Consensus 240 p~tGK~L~eiklPt~--qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTP--QITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCC--ceEEEEecCC
Confidence 999976666655544 5999999773
No 423
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.10 E-value=22 Score=34.29 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCCcEEEEEccC----ceeeeeec------------cC-------CccccCeEEEEe-----c-CCEEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAM----QVLLSVDE------------NS-------GFHVGPISGVDL-----T-GSECVSV 131 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~----~~~~~~~~------------~~-------~~h~~~v~~~~~-----~-~~~~~s~ 131 (343)
++..|+.+..||.+....... +....... .. ..-...+..+.+ + ...+++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 577888888999888887653 11110000 00 000122333322 2 6788899
Q ss_pred eCCCcEEEEECCCCce
Q 019258 132 GEDGRVNLVSVIGGGE 147 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~ 147 (343)
+.|+++|+||+.++..
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999854
No 424
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.98 E-value=13 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCce
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|++..++++...+++|.++|..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 56677887777889999999976543
No 425
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=74.76 E-value=87 Score=31.73 Aligned_cols=106 Identities=10% Similarity=0.036 Sum_probs=63.7
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEcc--ccCCCCCeeEEecccCCC---CCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLR--RAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
+..+++|+| ...|+.....|...+||+. .+.....+.......+.- .........|.|.++...+++ +...
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv--~~r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV--CNRS 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE--EcCC
Confidence 578899999 6789999999999999992 200111111111111100 000134568889877666554 4556
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+.++|++.......+.. ......|.++.-+|.++
T Consensus 225 ~l~~~d~~~~~~~~~l~~---------~~~~~~IlDv~~~~~~~ 259 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVT---------AKTWSWILDVKRSPDNP 259 (765)
T ss_pred ceEEEECCCCCccchhcc---------CCChhheeeEEecCCcc
Confidence 899999987544221210 23456788888888755
No 426
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.22 E-value=59 Score=28.31 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc------CCCcEEEEEccCceeeeeeccC-CccccCeEE
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST------LSGSLHVLSSAMQVLLSVDENS-GFHVGPISG 120 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s------~dg~v~v~~~~~~~~~~~~~~~-~~h~~~v~~ 120 (343)
..|++||........+-. ...|.|++|.|. +..++++|. ....+..||.....-..+.... ..-.++|+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 357899986544332222 266899999998 556666664 3456778887744321222111 123468888
Q ss_pred EEec
Q 019258 121 VDLT 124 (343)
Q Consensus 121 ~~~~ 124 (343)
+.+.
T Consensus 94 ~~~~ 97 (281)
T PF12768_consen 94 LTFI 97 (281)
T ss_pred EEee
Confidence 8774
No 427
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.10 E-value=13 Score=20.85 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.6
Q ss_pred cCeEEEEEcCCCCeEEEEEecC--CcEEEE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSS--GTVFAW 236 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~d--g~v~iw 236 (343)
+.-....|+|+|..++.+...+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4577889999999998888877 766665
No 428
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=73.08 E-value=75 Score=29.01 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=92.7
Q ss_pred EEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C-CEEEEEe--CCCcEEEEEccccCCC
Q 019258 119 SGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P-TEFVTGG--FGYGLQWWDLRRAGSG 191 (343)
Q Consensus 119 ~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~t~~--~d~~i~iwd~~~~~~~ 191 (343)
..+..+ +. .++....+..|.+.|+.+.+.......+. ....+.+.+ . ...++-. .++++.+.|... .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---~ 150 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---N 150 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCC---C
Confidence 344444 44 66677778999999987764333332222 366778888 4 3444444 368888888766 5
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
..+.....-. .+ ..+++.|++..++++-..++.|.+.|....... . ...+.. ..-...-..+.+.
T Consensus 151 ~~~~~~~vG~-------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~-~-~~~~~~-----~~~~~~P~~i~v~ 215 (381)
T COG3391 151 KVTATIPVGN-------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV-R-GSVGSL-----VGVGTGPAGIAVD 215 (381)
T ss_pred eEEEEEecCC-------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee-c-cccccc-----cccCCCCceEEEC
Confidence 5555533221 34 889999999888877778999999997653221 1 000000 0011233578888
Q ss_pred ecCCCCcCCCCCccceEEEec--CCeEEEEecCC
Q 019258 272 CHTKSSNISSSRVLPAMFCSE--DGILAVVEQGE 303 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~--dg~i~~~~~~~ 303 (343)
|++.. ..++... ++.+...+...
T Consensus 216 ~~g~~---------~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 216 PDGNR---------VYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred CCCCE---------EEEEeccCCCceEEEEeCCC
Confidence 88873 3333333 36777777643
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.80 E-value=65 Score=29.80 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=49.4
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC--------------CCeE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS--------------RKHT 223 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--------------~~~~ 223 (343)
.+.++..+| +.+.++...-|.|.++|+.. +..+...++...++ .+++....-... ...+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~---~~vvrmWKGYRdAq---c~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR---GIVVRMWKGYRDAQ---CGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCC---ChhhhhhccCccce---EEEEEeecccccccccccccCCCCcceEEE
Confidence 477888889 66666666689999999988 66666677665322 122222211111 0122
Q ss_pred EEEEecCCcEEEEEccCCceeee
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
++=.-.-|.|.+|.++++.....
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEE
Confidence 23345678899999988654433
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.07 E-value=67 Score=27.98 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=55.1
Q ss_pred cCCCCCCeeEEEcc--CCCeEEEEcCCCc-EEEEEccCceeeeee-ccCCccccCeEEEEecCCEEEEEeCC-----CcE
Q 019258 67 QWTPPTRISSLSTS--HQSLVAASTLSGS-LHVLSSAMQVLLSVD-ENSGFHVGPISGVDLTGSECVSVGED-----GRV 137 (343)
Q Consensus 67 ~~~~~~~v~~v~~~--~~~~l~~~s~dg~-v~v~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~s~s~d-----g~v 137 (343)
....+..-..|.|+ -+.-++.+-.-|+ ..++|.+..+.+... .-..-|...--.++.+|.++...-+| |.|
T Consensus 63 ~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 63 ATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred eeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence 33444555666666 3444555544443 467888754443332 22223433323333336666665433 678
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEE
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t 173 (343)
-+||.+.+-+-..-+..+.. .-..+.+.+ +..++.
T Consensus 143 GvYd~r~~fqrvgE~~t~Gi-GpHev~lm~DGrtlvv 178 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGI-GPHEVTLMADGRTLVV 178 (366)
T ss_pred EEEecccccceecccccCCc-CcceeEEecCCcEEEE
Confidence 89999864222223334443 567777777 444443
No 431
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.90 E-value=89 Score=28.97 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCce-e--eeeeccCCccccCeEEEEec------CCEEEEEeCCCcEEEEECCC--Cc---
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQV-L--LSVDENSGFHVGPISGVDLT------GSECVSVGEDGRVNLVSVIG--GG--- 146 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~-~--~~~~~~~~~h~~~v~~~~~~------~~~~~s~s~dg~v~~wd~~~--~~--- 146 (343)
+.+.+++|+.+|.++||+-...+ . -.+.+. .-..||..+..- ....++.=.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE--ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 45789999999999999886221 1 111111 134577777653 22333334455677776621 11
Q ss_pred ----eEEEEEcCCCccceEEEEeC---C---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 147 ----EFKRVYDGNGLVGFNCVKWA---S---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 147 ----~~~~~~~~~~~~~v~~~~~~---~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.....++++=......+.+- . ...+..-+.||.+.+++-+. .....+.... ---..+.+
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~----~~f~~~lp~~-------llPgPl~Y 182 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES----FAFSRFLPDF-------LLPGPLCY 182 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc----EEEEEEcCCC-------CCCcCeEE
Confidence 12222322211123333332 2 35677788899999999755 1111111111 11224555
Q ss_pred cCCCCeEEEEEecCCcEEEEEc
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.|.-. .|++++.+..+.-|..
T Consensus 183 ~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 183 CPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred eecCC-EEEEecCceeEEEecH
Confidence 55533 4567888888888865
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.74 E-value=1.4e+02 Score=30.29 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccC-C-----ccccCeEEEEe------------------cCCEEEEEeCCCcE
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENS-G-----FHVGPISGVDL------------------TGSECVSVGEDGRV 137 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~-~-----~h~~~v~~~~~------------------~~~~~~s~s~dg~v 137 (343)
++.|+.++.++.|.-.|..+++.+=..... . .| ..+..+.+ ++..++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 567777777787777777655443111100 0 01 01222222 24478888899999
Q ss_pred EEEECCCCceEEEEEcCCCc-----------cceEEEEeCC---CCEEEEEeC----------CCcEEEEEccccCCCCC
Q 019258 138 NLVSVIGGGEFKRVYDGNGL-----------VGFNCVKWAS---PTEFVTGGF----------GYGLQWWDLRRAGSGGP 193 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~---~~~l~t~~~----------d~~i~iwd~~~~~~~~~ 193 (343)
.-.|.++++.+..+ ..... .....+.-.| .+.++.++. +|.|+-+|.++ ++.
T Consensus 273 iALDA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T---Gkl 348 (764)
T TIGR03074 273 IALDADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT---GAL 348 (764)
T ss_pred EEEECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC---CcE
Confidence 99999998655432 11110 0011122233 567777753 68899999999 777
Q ss_pred eeEEe
Q 019258 194 VLQFK 198 (343)
Q Consensus 194 ~~~~~ 198 (343)
+..+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 76654
No 433
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.11 E-value=21 Score=24.77 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=26.9
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
...+.|.++|++..++++....+.|.+|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45778999999999998888899999997653
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.94 E-value=78 Score=26.74 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=60.4
Q ss_pred EEEEec--C-CEEEEEeCCCcEEEEEC--CCCc-----eEEEEEc--CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEc
Q 019258 119 SGVDLT--G-SECVSVGEDGRVNLVSV--IGGG-----EFKRVYD--GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDL 185 (343)
Q Consensus 119 ~~~~~~--~-~~~~s~s~dg~v~~wd~--~~~~-----~~~~~~~--~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~ 185 (343)
+.++|+ . ...+.=+.+-+|.-||. .++. .+..+.. ..+...--.++... +++++++-..++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 567777 3 34456677888888883 3321 1111111 11111122334444 778888888999999999
Q ss_pred cccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 186 RRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
.+ ++.+.+++... ..|+|++|--..-.++.+
T Consensus 241 ~t---GK~L~eiklPt-------~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 241 TT---GKILLEIKLPT-------PQITSCCFGGKNLDILYV 271 (310)
T ss_pred CC---CcEEEEEEcCC-------CceEEEEecCCCccEEEE
Confidence 99 88888887665 669999997543334433
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.85 E-value=1.4e+02 Score=29.69 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=36.7
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~ 144 (343)
.--.|+||++. ++.+...-+ ..+++..+.|+ ...+++...||++.++++..
T Consensus 62 a~~~I~If~~s-G~lL~~~~w---~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQLLGRILW---KHGELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cceeEEEEecc-ccchHHHHh---cCCCeeeecccCCceEEEEeccceEEEeecch
Confidence 34457777775 333322223 23488999999 89999999999999999865
No 436
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.01 E-value=95 Score=27.43 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=86.7
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe-CCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc
Q 019258 129 VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW-ASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA 207 (343)
Q Consensus 129 ~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (343)
.+--..+.|.-|+..+++ .+.+..+.. +.++.. .....|+++.. .+.++++.. +..+..+..... +..
T Consensus 41 w~DI~~~~i~r~~~~~g~--~~~~~~p~~--~~~~~~~d~~g~Lv~~~~--g~~~~~~~~---~~~~t~~~~~~~--~~~ 109 (307)
T COG3386 41 WVDILGGRIHRLDPETGK--KRVFPSPGG--FSSGALIDAGGRLIACEH--GVRLLDPDT---GGKITLLAEPED--GLP 109 (307)
T ss_pred EEeCCCCeEEEecCCcCc--eEEEECCCC--cccceeecCCCeEEEEcc--ccEEEeccC---CceeEEeccccC--CCC
Confidence 333455667777766552 222223332 444433 33555665543 345666644 333233322221 111
Q ss_pred ccCeEEEEEcCCCCeEEEEEe----------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 208 SGMIHSVDIHPSRKHTCLAGG----------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
....+.+..+|+|...+-+-+ .-|.|+.+|.. .....+. ..+-..-+.|+|+|++..
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~----------~~~~~~~NGla~SpDg~t- 176 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLL----------DDDLTIPNGLAFSPDGKT- 176 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEee----------cCcEEecCceEECCCCCE-
Confidence 144677888888865443222 01334444431 1122222 223344578999999985
Q ss_pred cCCCCCccceEEEecCCeEEEEecCC---Cc---c--ccc-ccccccceeeecCCCCCeeEEccCCc-eEEEEe
Q 019258 278 NISSSRVLPAMFCSEDGILAVVEQGE---EP---F--ELL-AEPCAINSFDIDPQNPSDVICSLEWE-SIAIVS 341 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~~~~~---~~---~--~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~-~i~~~~ 341 (343)
+.++=+..+.|+.++... .. . ... .++...-.+.++. +|.+-+++..++ .|.+|+
T Consensus 177 --------ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 177 --------LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred --------EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEEC
Confidence 455556668887765532 00 0 111 1134455566665 334444554443 676664
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=64.28 E-value=58 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.8
Q ss_pred cCeEEEEEcCCC-----CeEEEEEecCCcEEEEEccC
Q 019258 209 GMIHSVDIHPSR-----KHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 209 ~~i~~v~~~p~~-----~~~~~sg~~dg~v~iwd~~~ 240 (343)
..+.+++|+|.| +-+|++-+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 469999999964 45788889999999997543
No 438
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=64.12 E-value=1.8e+02 Score=29.98 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=128.5
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC--CCeeEEE--cc--CCCeEEEEcCCC
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP--TRISSLS--TS--HQSLVAASTLSG 92 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~--~~v~~v~--~~--~~~~l~~~s~dg 92 (343)
-+|..+.---...+.+.-++|++.-...+ +|++..-.-. ..-+...+.+ ..++.++ +. .+++|+.+-.+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdg--SLRiiRngi~--I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~- 428 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDG--SLRIIRNGIG--IDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFIS- 428 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCC--cEEEEecccc--cceeeEeecCCccceeEeeccccccCCcEEEEEecc-
Confidence 35666665554333455566665433323 5777765322 1112333333 4567777 44 33455554443
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (343)
.-++..+... +....-. +-......+..+ ++.++=...+ .|++++-. + .+..+.......+..+..+ ..
T Consensus 429 eTrvl~i~~e--~ee~~~~-gf~~~~~Tif~S~i~g~~lvQvTs~-~iRl~ss~-~--~~~~W~~p~~~ti~~~~~n-~s 500 (1096)
T KOG1897|consen 429 ETRVLNISEE--VEETEDP-GFSTDEQTIFCSTINGNQLVQVTSN-SIRLVSSA-G--LRSEWRPPGKITIGVVSAN-AS 500 (1096)
T ss_pred ceEEEEEccc--eEEeccc-cccccCceEEEEccCCceEEEEecc-cEEEEcch-h--hhhcccCCCceEEEEEeec-ce
Confidence 3456666522 1111100 011111222222 4443333332 36666644 1 1222223333123333222 34
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC--CCe---EEEEEecCCcEEEEEccCCcee
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS--RKH---TCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~---~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
.++.++.++.+...+... .. +.....+. -...|.|++++|- +++ +++.|..+..+.+.-.-.....
T Consensus 501 qVvvA~~~~~l~y~~i~~---~~-l~e~~~~~-----~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIED---GG-LREVSHKE-----FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEEecCccEEEEEEeec---cc-eeeeeehe-----ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 577777778888777766 22 22222111 1166999999976 344 7888887666554432211111
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe--cCCCc------ccccccccccc
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE--QGEEP------FELLAEPCAIN 316 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~--~~~~~------~~~~~~~~~i~ 316 (343)
....... . +.-...|.-..|-.+.. +|+.+..||.+..+. ..... ..+=..|....
T Consensus 572 ~~~~~l~-~-----~~iPRSIl~~~~e~d~~----------yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr 635 (1096)
T KOG1897|consen 572 ITHEQLS-G-----EIIPRSILLTTFEGDIH----------YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR 635 (1096)
T ss_pred eeeeccC-C-----CccchheeeEEeeccce----------EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE
Confidence 1111000 0 11122333334433333 799999999986643 32211 11112234455
Q ss_pred eeeecCCCCCeeEEccCCce
Q 019258 317 SFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~ 336 (343)
.|... .+..++|-+|-..
T Consensus 636 ~f~sk--~~t~vfa~sdrP~ 653 (1096)
T KOG1897|consen 636 TFSSK--SRTAVFALSDRPT 653 (1096)
T ss_pred EEeeC--CceEEEEeCCCCE
Confidence 55554 3578887776653
No 439
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=62.62 E-value=97 Score=26.33 Aligned_cols=146 Identities=8% Similarity=0.008 Sum_probs=67.3
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC---CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF---GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH 212 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (343)
-.+||+.+++ .+.+....+. -+.+-.+.+ +..+.+|+. ...+++++.-..+........... .. ...+=.
T Consensus 48 s~~yD~~tn~-~rpl~v~td~-FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~---m~-~~RWYp 121 (243)
T PF07250_consen 48 SVEYDPNTNT-FRPLTVQTDT-FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND---MQ-SGRWYP 121 (243)
T ss_pred EEEEecCCCc-EEeccCCCCC-cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc---cc-CCCccc
Confidence 3588998873 4443222221 233334556 777777776 345777775320001111111100 00 003334
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEccC-CceeeeeecCCCCcccccCCccccE-EEEEEeecCCCCcCCCCCccceEEE
Q 019258 213 SVDIHPSRKHTCLAGGSSGTVFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEV-WEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
++..-|+|+.+++.|...-+..+|+-+. ...+..+..... +. ....... --+...|++. .++.+
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~---~~-~~~~~nlYP~~~llPdG~----------lFi~a 187 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ---TS-DTLPNNLYPFVHLLPDGN----------LFIFA 187 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh---hh-ccCccccCceEEEcCCCC----------EEEEE
Confidence 5555678876665555555566666532 122222110000 00 0000111 2355677776 67777
Q ss_pred ecCCeEEEEecC
Q 019258 291 SEDGILAVVEQG 302 (343)
Q Consensus 291 s~dg~i~~~~~~ 302 (343)
..+..|+.++.+
T Consensus 188 n~~s~i~d~~~n 199 (243)
T PF07250_consen 188 NRGSIIYDYKTN 199 (243)
T ss_pred cCCcEEEeCCCC
Confidence 777777766654
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=62.59 E-value=14 Score=37.01 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=59.5
Q ss_pred CCCCeeEEEcc----CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEe-------------cCCEEEEEe
Q 019258 70 PPTRISSLSTS----HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL-------------TGSECVSVG 132 (343)
Q Consensus 70 ~~~~v~~v~~~----~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~-------------~~~~~~s~s 132 (343)
....+.-+.|+ +.-.+..+-.+|.+++...++... .+. +.|...++.+++ .|..|+.++
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF---RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH---HhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 33445555555 566777778899999988763221 111 235554444433 366777777
Q ss_pred CCCcEEEEECC-CCc---eEEEEEcCCCccceEEEEeCC----------CCEEEEEeC-CCcEEEEEccc
Q 019258 133 EDGRVNLVSVI-GGG---EFKRVYDGNGLVGFNCVKWAS----------PTEFVTGGF-GYGLQWWDLRR 187 (343)
Q Consensus 133 ~dg~v~~wd~~-~~~---~~~~~~~~~~~~~v~~~~~~~----------~~~l~t~~~-d~~i~iwd~~~ 187 (343)
.||.++.|.+- +++ .+......|+.-+-.|.-++. -..++++++ ...+++|....
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 77777776652 111 122223334421223322332 123444444 77788887644
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=62.34 E-value=67 Score=24.41 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=56.8
Q ss_pred Ecc-CCCeEEEEcCCCcEEEEEccCce--------eeeeeccCCccccCeEEEEec------CCEEEEEeCCCcEEEEEC
Q 019258 78 STS-HQSLVAASTLSGSLHVLSSAMQV--------LLSVDENSGFHVGPISGVDLT------GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 78 ~~~-~~~~l~~~s~dg~v~v~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~------~~~~~s~s~dg~v~~wd~ 142 (343)
+|. ....|++++..|+|.|++..... .+.... -...|+++.-- +..++..+....+..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 454 34578888899999999765221 112221 12356666443 233444444556999999
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC----CCEEEEEeCCCcEEEEEccc
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~ 187 (343)
.+...+... +-++ .+.++.+-. ...++..+.+..|.-||..-
T Consensus 81 ~~N~d~Fyk-e~~D--Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDLFYK-EVPD--GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ccCchhhhh-hCcc--ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 876432221 1223 466665532 34455555567777776543
No 442
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=61.07 E-value=63 Score=27.64 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=44.4
Q ss_pred ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecC---CCCCeeEEccCCce
Q 019258 261 SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDP---QNPSDVICSLEWES 336 (343)
Q Consensus 261 h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~---~~~~~l~~~~~~~~ 336 (343)
+...|++|.--+.+.. ..+.+-.|+.|.++|.|++.|...- ......-+.....+..++ +-...++.++.|+.
T Consensus 175 ~~t~ITcm~tikk~~~---d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 175 RQTVITCMATIKKSSA---DEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGK 251 (257)
T ss_pred cCceeEEeeeeccccc---CCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCE
Confidence 3456777666443221 1112227999999999999998542 211111122111222222 01256788889999
Q ss_pred EEEEeC
Q 019258 337 IAIVSR 342 (343)
Q Consensus 337 i~~~~~ 342 (343)
||+.+|
T Consensus 252 iy~irr 257 (257)
T PF14779_consen 252 IYTIRR 257 (257)
T ss_pred EEEEeC
Confidence 999986
No 443
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.64 E-value=1.2e+02 Score=26.75 Aligned_cols=281 Identities=12% Similarity=0.081 Sum_probs=116.5
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCc-cCCC--CCCeeEEEccCCCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHS-QWTP--PTRISSLSTSHQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~-~~~~--~~~v~~v~~~~~~~l~ 86 (343)
+....|....+..|.|.. ..+-++.|++. . ++...+. ..+.... .... .-...++.|.++..++
T Consensus 9 ~~v~l~t~~~l~dV~F~d----~~~G~~VG~~g-~-------il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 9 QQVSLPTDKPLLDVAFVD----PNHGWAVGAYG-T-------ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp EEEE-S-SS-EEEEEESS----SS-EEEEETTT-E-------EEEESSTTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred EEeecCCCCceEEEEEec----CCEEEEEecCC-E-------EEEECCCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 445567778899999996 45556666543 1 3333221 1121111 1111 1246778887555555
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+|. .|. .+.....++.-........-.+....+... ......++..|.|.. ..+.++.-..+...... .+..+.-
T Consensus 77 vG~-~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~g-s~~~~~r 152 (302)
T PF14870_consen 77 VGE-PGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVVSETSG-SINDITR 152 (302)
T ss_dssp EEE-TTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE-S-----EEEEEE
T ss_pred EcC-Cce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcccCCcc-eeEeEEE
Confidence 553 442 222222222222111100111222333333 445554555554332 22233323333333333 5888877
Q ss_pred CCCCEEEEEeCCCc-EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee
Q 019258 166 ASPTEFVTGGFGYG-LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 166 ~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
.+...+++.+..|. +.-||.-. ........... ..|..+.|.|++. +.+ ....|.|++=|.......
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~----~~w~~~~r~~~------~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQ----TTWQPHNRNSS------RRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-----SS-EEEE--SS------S-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEE
T ss_pred CCCCcEEEEECcccEEEEecCCC----ccceEEccCcc------ceehhceecCCCC-EEE-EeCCcEEEEccCCCCccc
Confidence 77444555555554 45677533 22222222111 6699999999865 333 347888888772221111
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc----cccccccccceeee
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF----ELLAEPCAINSFDI 320 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~----~~~~~~~~i~s~~~ 320 (343)
....... ...-.-.+..++|.+.+ .+..++..|.|+.=.-+-+.- ....-+..++.+.+
T Consensus 221 w~~~~~~------~~~~~~~~ld~a~~~~~-----------~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 221 WSEPIIP------IKTNGYGILDLAYRPPN-----------EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp E---B-T------TSS--S-EEEEEESSSS------------EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred cccccCC------cccCceeeEEEEecCCC-----------CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEE
Confidence 1111000 01122348999999774 467778888776632221111 11222456888888
Q ss_pred cCCCCCeeEEccCCceEE
Q 019258 321 DPQNPSDVICSLEWESIA 338 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~ 338 (343)
.+++ +-.+.| .++.+-
T Consensus 284 ~~~~-~gf~lG-~~G~ll 299 (302)
T PF14870_consen 284 VNPD-KGFVLG-QDGVLL 299 (302)
T ss_dssp EETT-EEEEE--STTEEE
T ss_pred cCCC-ceEEEC-CCcEEE
Confidence 6532 445555 455543
No 444
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=59.77 E-value=1.5e+02 Score=27.61 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=107.9
Q ss_pred cCCCCccccCCcccceeeEEecCCC-CCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCC--eeEEEc---
Q 019258 6 VRTPPQVHRFPQSKYIDAVRWLPPL-SPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTR--ISSLST--- 79 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~v~w~p~~-~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~--v~~v~~--- 79 (343)
+++|..-...|+.+-+...+..+.. ...+++|||-.-|.+..+..=-|..++-... --++-|.+- ..+ ++
T Consensus 7 y~SP~~A~~~p~E~l~YV~~~~~~~~~~~pD~LatVDvdP~S~tYgqVIhrl~mp~~---GDElHH~GWNaCSs-c~~~~ 82 (461)
T PF05694_consen 7 YASPLDAMKGPREKLLYVWCLYPGTGIDKPDYLATVDVDPDSPTYGQVIHRLPMPNR---GDELHHSGWNACSS-CHYGD 82 (461)
T ss_dssp -SSHHHHHTS---SEEEEEEE-TTTT-----EEEEEE--TTSTTTTSEEEEEE-SSS------B---EES--GG-STT--
T ss_pred CCCHHHHhhCCCceEEEEEeecCCCCCCCCCeEEEEECCCCCCCcccEEEEEeCCCC---CCccccccCccccc-ccCCC
Confidence 3444433355666667777777742 2356899998888653221112333311100 012223221 111 22
Q ss_pred -c-CCCeEEEEc-CCCcEEEEEccC-ce---eeeeeccCCcc-----ccCeEEEEec-CCEEEEEe--CC----CcEEEE
Q 019258 80 -S-HQSLVAAST-LSGSLHVLSSAM-QV---LLSVDENSGFH-----VGPISGVDLT-GSECVSVG--ED----GRVNLV 140 (343)
Q Consensus 80 -~-~~~~l~~~s-~dg~v~v~~~~~-~~---~~~~~~~~~~h-----~~~v~~~~~~-~~~~~s~s--~d----g~v~~w 140 (343)
+ +-++|++.+ .++.|+|+|+.. .. ...+.+-...+ ..+-+.-+.- |+.++|+= .+ |.+.+.
T Consensus 83 ~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 83 PSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 1 335565555 688999999972 22 12222210011 1121222222 66777652 22 457777
Q ss_pred ECCCCceEEEEEcCCC--ccceEEEEeCC-CCEEEEEe--------------------CCCcEEEEEccccCCCCCeeEE
Q 019258 141 SVIGGGEFKRVYDGNG--LVGFNCVKWAS-PTEFVTGG--------------------FGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~l~t~~--------------------~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
|-++. .+....+... ...-+.+.|.| .+.++|.. +..++.+||+.. .+.++++
T Consensus 163 D~~tf-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~---r~~~Q~i 238 (461)
T PF05694_consen 163 DGETF-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST---RKLLQTI 238 (461)
T ss_dssp -TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT---TEEEEEE
T ss_pred cCccc-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC---CcEeeEE
Confidence 87765 3554444321 11345667777 66666652 467899999988 6666666
Q ss_pred ecccCCCCCcccCeEEEEE--cCCCCeEEEEEecCCcEEEEEc-cCCce-eeeeecCCCCcc----ccc-----CCcccc
Q 019258 198 KGNFGSQGKASGMIHSVDI--HPSRKHTCLAGGSSGTVFAWDL-RWQQQ-SIVLSGVGTGEA----VTH-----SLSESE 264 (343)
Q Consensus 198 ~~~~~~~~~~~~~i~~v~~--~p~~~~~~~sg~~dg~v~iwd~-~~~~~-~~~~~~~~~~~~----~~~-----~~h~~~ 264 (343)
..-.. .....-|.| +|...+-|+.+.-..+|..|-- ..++- ......+..... ... ..-..-
T Consensus 239 dLg~~-----g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 239 DLGEE-----GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp ES-TT-----EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred ecCCC-----CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 53321 023445555 4555555555555556666543 22110 001111000000 000 001244
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
|.+|..+.++.. +.+++=.+|.|+.+|-..
T Consensus 314 itDI~iSlDDrf---------LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 314 ITDILISLDDRF---------LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ---EEE-TTS-E---------EEEEETTTTEEEEEE-SS
T ss_pred eEeEEEccCCCE---------EEEEcccCCcEEEEecCC
Confidence 788889988875 666788899999999754
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=58.92 E-value=2.1e+02 Score=29.03 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCcc-------ceEEEEeCC-----------------CCEEEEEeCCCcE
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLV-------GFNCVKWAS-----------------PTEFVTGGFGYGL 180 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~-------~v~~~~~~~-----------------~~~l~t~~~d~~i 180 (343)
++.++.++.++.|.-.|..+++..-+. ...... ....+.+.. ..+++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~-d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKF-DPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEE-cCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 677777888888998998888643332 221110 122233321 3478888899999
Q ss_pred EEEEccccCCCCCeeEEecccC---CCCC--cccCeEEEEEcCC-CCeEEEEEec----------CCcEEEEEccCCcee
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFG---SQGK--ASGMIHSVDIHPS-RKHTCLAGGS----------SGTVFAWDLRWQQQS 244 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~---~~~~--~~~~i~~v~~~p~-~~~~~~sg~~----------dg~v~iwd~~~~~~~ 244 (343)
.-.|.++ ++.+..+..... .++. ....-..+.-.|- -...++.|+. +|.|+-+|.++++..
T Consensus 273 iALDA~T---Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 273 IALDADT---GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEECCC---CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999988 777766532110 0000 0000001111111 0123445542 688999999998876
Q ss_pred eeee
Q 019258 245 IVLS 248 (343)
Q Consensus 245 ~~~~ 248 (343)
....
T Consensus 350 W~~~ 353 (764)
T TIGR03074 350 WAWD 353 (764)
T ss_pred eEEe
Confidence 6654
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=58.35 E-value=65 Score=31.04 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=24.0
Q ss_pred cCeEEEEEcC---CCCeEEEEEecCCcEEEEEccCCce
Q 019258 209 GMIHSVDIHP---SRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 209 ~~i~~v~~~p---~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+....++.++ ++..++++-+.|+++++||+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 4455666665 2345677899999999999998766
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=57.61 E-value=40 Score=27.89 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=28.3
Q ss_pred eEEEEEecCCcEEEEEccCCcee-eeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQS-IVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+|+ +...+.|.+||+.....+ .... .--+.|..+.++..+.
T Consensus 30 ~Lfv-a~~g~~Vev~~l~~~~~~~~~~F-----------~Tv~~V~~l~y~~~GD 72 (215)
T PF14761_consen 30 ALFV-AASGCKVEVYDLEQEECPLLCTF-----------STVGRVLQLVYSEAGD 72 (215)
T ss_pred eEEE-EcCCCEEEEEEcccCCCceeEEE-----------cchhheeEEEeccccc
Confidence 4544 366788999999843333 2222 1347899999998877
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=57.37 E-value=0.83 Score=41.98 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
++.-++.++.+..+..||-........ .-.+....++|. ++ .++.+-..+.+.+||+.+.. ..++..+...
T Consensus 45 e~~nlavaca~tiv~~YD~agq~~le~-----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~~ 118 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKAGQVILEL-----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGTS 118 (615)
T ss_pred CCCceehhhhhhHHHhhhhhcceeccc-----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCcc
Confidence 444588888888888888763322211 134566777787 44 45567788999999998752 2222222211
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.-.-+.|++ ...++.+...+.+.++..+. .+.+...-.|. ..+.++++.+.+. .+.++.|..+.+
T Consensus 119 -s~sll~wsKg~~el~ig~~~gn~viynhgt---sR~iiv~Gkh~-------RRgtq~av~lEd~--vil~dcd~~L~v 184 (615)
T KOG2247|consen 119 -SKSLLAWSKGTPELVIGNNAGNIVIYNHGT---SRRIIVMGKHQ-------RRGTQIAVTLEDY--VILCDCDNTLSV 184 (615)
T ss_pred -hHHHHhhccCCccccccccccceEEEeccc---hhhhhhhcccc-------cceeEEEecccce--eeecCcHHHHHH
Confidence 122266777 56677777899999999876 33332222122 6689999999764 344555544433
No 449
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=56.02 E-value=1.7e+02 Score=26.92 Aligned_cols=204 Identities=16% Similarity=0.091 Sum_probs=102.0
Q ss_pred EEecCCCCCCCCeEEEEeecCCCC------CCceeeeeCCCCCCC-CCCccCCCCCC-eeEEEcc-CCCeEEEEcC-C--
Q 019258 24 VRWLPPLSPLSKLAVLAIYDTDAD------SPSLETHSISLPASL-TPHSQWTPPTR-ISSLSTS-HQSLVAASTL-S-- 91 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s~D~~~~------~~~l~~w~~~~~~~~-~~~~~~~~~~~-v~~v~~~-~~~~l~~~s~-d-- 91 (343)
+.|.+ ++..|+-...|.... ...++.|.+...... .++..-+.+.. ...+..+ ++.+|+..+. .
T Consensus 175 ~~W~~----d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 175 VSWSD----DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp EEECT----TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred EEEeC----CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 99999 777777666665322 345788888553221 12222222333 5567777 7777665443 2
Q ss_pred -CcEEEEEccCc-----eeeeeeccCCccccCeEEEEecCCEEEEEe----CCCcEEEEECCCCce--EE-EEEcCCCcc
Q 019258 92 -GSLHVLSSAMQ-----VLLSVDENSGFHVGPISGVDLTGSECVSVG----EDGRVNLVSVIGGGE--FK-RVYDGNGLV 158 (343)
Q Consensus 92 -g~v~v~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s----~dg~v~~wd~~~~~~--~~-~~~~~~~~~ 158 (343)
..+.+.++... ....+... ..+....+...+..|...+ ..+.|...++.+... .. .+.......
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 34666666642 12222211 1122333444455444333 345677777776531 22 333333322
Q ss_pred ceEEEEeCCCCEEEEEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec---CCcE
Q 019258 159 GFNCVKWASPTEFVTGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS---SGTV 233 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~---dg~v 233 (343)
.+..+......+++..-.++ .|+++|+.. +.....+..... +.|..+...+....++++-++ -+++
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~---~~~~~~~~~p~~------g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLDD---GKESREIPLPEA------GSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEETT----TEEEEEEESSSS------SEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred eEEEEEEECCEEEEEEEECCccEEEEEECCC---CcEEeeecCCcc------eEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 46666554455555555544 466777762 244444443321 446677666766666555443 4468
Q ss_pred EEEEccCCce
Q 019258 234 FAWDLRWQQQ 243 (343)
Q Consensus 234 ~iwd~~~~~~ 243 (343)
+.||+.+++.
T Consensus 399 y~~d~~t~~~ 408 (414)
T PF02897_consen 399 YRYDLATGEL 408 (414)
T ss_dssp EEEETTTTCE
T ss_pred EEEECCCCCE
Confidence 8888877543
No 450
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=55.92 E-value=29 Score=18.16 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred CeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 73 RISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 73 ~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
.|.+++-. +..++++++.+.+|+|
T Consensus 3 ~i~aia~g-~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAG-DSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEcc-CCEEEEEeCCCeEEec
Confidence 46666665 6788899999999987
No 451
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.22 E-value=1.9e+02 Score=25.55 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=99.1
Q ss_pred CCCCCCeeEEEccCC-CeEEEEcCCCcEEEEEccC-ceeeeee--ccCCccccCeEEEEecCCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTSHQ-SLVAASTLSGSLHVLSSAM-QVLLSVD--ENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~-~~l~~~s~dg~v~v~~~~~-~~~~~~~--~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~ 143 (343)
++....+.+|.|.++ .-+++| ..|. |+...+ ++.-... .....-.-...++.+.++....++..+ +.+...+
T Consensus 13 l~t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~D 88 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTD 88 (302)
T ss_dssp -S-SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESS
T ss_pred cCCCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecC
Confidence 344568999999944 445555 4454 344432 2211111 110000123566777754455556666 4444444
Q ss_pred CCceEEEEEc--CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYD--GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
.++.-.++.. .-.. ....+..........++..|. ||-... .++.-..+.... . +.+..+...+++.
T Consensus 89 gG~tW~~v~l~~~lpg-s~~~i~~l~~~~~~l~~~~G~--iy~T~D--gG~tW~~~~~~~--~----gs~~~~~r~~dG~ 157 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPG-SPFGITALGDGSAELAGDRGA--IYRTTD--GGKTWQAVVSET--S----GSINDITRSSDGR 157 (302)
T ss_dssp TTSS-EE----TT-SS--EEEEEEEETTEEEEEETT----EEEESS--TTSSEEEEE-S----------EEEEEE-TTS-
T ss_pred CCCCcEEeecCCCCCC-CeeEEEEcCCCcEEEEcCCCc--EEEeCC--CCCCeeEcccCC--c----ceeEeEEECCCCc
Confidence 4433333211 1111 233333333344444555564 443443 345544433221 1 6688888899886
Q ss_pred eEEEEEecCCcE-EEEEccCC-ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 222 HTCLAGGSSGTV-FAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 222 ~~~~sg~~dg~v-~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
. +++ +..|.+ .-||--.. =.|.. ..-...|..|.|.|++. |......|.|+.=
T Consensus 158 ~-vav-s~~G~~~~s~~~G~~~w~~~~------------r~~~~riq~~gf~~~~~-----------lw~~~~Gg~~~~s 212 (302)
T PF14870_consen 158 Y-VAV-SSRGNFYSSWDPGQTTWQPHN------------RNSSRRIQSMGFSPDGN-----------LWMLARGGQIQFS 212 (302)
T ss_dssp E-EEE-ETTSSEEEEE-TT-SS-EEEE--------------SSS-EEEEEE-TTS------------EEEEETTTEEEEE
T ss_pred E-EEE-ECcccEEEEecCCCccceEEc------------cCccceehhceecCCCC-----------EEEEeCCcEEEEc
Confidence 4 444 455665 46775321 12222 22357899999999865 4445588888876
Q ss_pred ecCCCccccc-------ccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 300 EQGEEPFELL-------AEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 300 ~~~~~~~~~~-------~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+......+.. ...--+..+++.++ +...++|+ .+.+++.
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg-~G~l~~S 258 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPP-NEIWAVGG-SGTLLVS 258 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSS-S-EEEEES-TT-EEEE
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCC-CCEEEEeC-CccEEEe
Confidence 6222111111 11123567777763 34444444 5566553
No 452
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.09 E-value=1.9e+02 Score=25.31 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=56.1
Q ss_pred eEEEEeCC--CCEEEEEeCCC-cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe----cCCc
Q 019258 160 FNCVKWAS--PTEFVTGGFGY-GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG----SSGT 232 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~----~dg~ 232 (343)
...+.++| +.-++.+-.-| ...++|... .+.+..+...++ + ..---=.|+|+|..+.++-. .-|.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~---~~~pv~~~s~~~-R----HfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG---AQEPVTLVSQEG-R----HFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC---CcCcEEEecccC-c----eeecccccCCCCcEEEeecCCCCCCCce
Confidence 44556676 44444444433 456788876 444444332221 1 11112368999988776633 2467
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
|-+||.+..-+.+... ..|.-.--+|.+.+|+..
T Consensus 142 iGvYd~r~~fqrvgE~----------~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 142 IGVYDAREGFQRVGEF----------STHGIGPHEVTLMADGRT 175 (366)
T ss_pred EEEEecccccceeccc----------ccCCcCcceeEEecCCcE
Confidence 9999998644333333 345555567888888773
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.71 E-value=2.4e+02 Score=26.44 Aligned_cols=146 Identities=10% Similarity=-0.039 Sum_probs=80.2
Q ss_pred CeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc--eE
Q 019258 73 RISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG--EF 148 (343)
Q Consensus 73 ~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~--~~ 148 (343)
+-+.+-|.+.+.++-+...|.+.-|.+.....-..........|+|.++.|+ .+.++.--.|++|.+.+..... ..
T Consensus 24 esngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 3456666644444444444556667665222111122222356799999999 5566777889999998873321 11
Q ss_pred EEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 149 KRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
...........|....|..+..++... +..+.+|.... ..+.+...+.+. ..|+--.|.|+-.-++++.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~p--ekrslRlVks~~-------~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLP--EKRSLRLVKSHN-------LNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEch--hhhhhhhhhhcc-------cCccEEEEccccceEeeecc
Confidence 111111222258888998765565554 44466666543 123333333332 45777778777655555544
No 454
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.11 E-value=2.1e+02 Score=25.22 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=30.6
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCceEEEEEcCCC-ccceEEEEeCCCCEEEEEeCCCc----EEEEEccc
Q 019258 125 GSECVSVGED-----GRVNLVSVIGGGEFKRVYDGNG-LVGFNCVKWASPTEFVTGGFGYG----LQWWDLRR 187 (343)
Q Consensus 125 ~~~~~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~t~~~d~~----i~iwd~~~ 187 (343)
+..++.|+.. ..+..||+.+.+ -..+-.... ...-.++....+..++.|+.++. +..||+++
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQE-WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCC-eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 6666777642 357778887653 222211111 10111222223566777776543 45778765
No 455
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=45.89 E-value=2.7e+02 Score=26.46 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCe-eEEecc-cCCCCCcccCeEEEEEcCCCCeEEEEEec--CCcEEEEEccCCce
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPV-LQFKGN-FGSQGKASGMIHSVDIHPSRKHTCLAGGS--SGTVFAWDLRWQQQ 243 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~v~~~p~~~~~~~sg~~--dg~v~iwd~~~~~~ 243 (343)
...++-+..+|.+....+.. .+..+ ....+. . ....++.+..++..+++.|++ |+.+..|.....+.
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~--~~~~i~i~~~g~~~-------~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~ 292 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDN--DGGSISITYLGTLC-------SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEV 292 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEE--EEEEEEEEEEEE---------S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEE
T ss_pred CCEEEEEeCCCeEEEEEEEE--CCCeEEEEEcCCcC-------ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEE
Confidence 67788899999999988766 12111 111111 1 446677776655335566776 44555555333222
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe---cCCeEEEEecCCCcc--ccccc----ccc
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS---EDGILAVVEQGEEPF--ELLAE----PCA 314 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s---~dg~i~~~~~~~~~~--~~~~~----~~~ 314 (343)
...+. .-++|.+++.-+............-.+++|| .+|.|++++.+-+.. ..... ...
T Consensus 293 ~~~~~------------N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~ 360 (504)
T PF10433_consen 293 LDSLP------------NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTG 360 (504)
T ss_dssp EEEE----------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEE
T ss_pred EEecc------------CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceE
Confidence 22222 3578999999754321110000000355554 577999998876554 32222 234
Q ss_pred cceeeecCCCCCeeEEccCCceEE
Q 019258 315 INSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+..+.....+..+|+++..+++..
T Consensus 361 iW~l~~~~~~~~~lv~S~~~~T~v 384 (504)
T PF10433_consen 361 IWTLKLSSSDHSYLVLSFPNETRV 384 (504)
T ss_dssp EEEE-SSSSSBSEEEEEESSEEEE
T ss_pred EEEeeecCCCceEEEEEcCCceEE
Confidence 555554432247888888766543
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.79 E-value=1.6 Score=40.13 Aligned_cols=142 Identities=11% Similarity=0.170 Sum_probs=88.1
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.....|-+ +..++.++.+..+..||-.. +....... . +..-.++|+-+++.+++.+-..+.+.+||+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~n~-t-------g~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILELNP-T-------GKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc----ceecccCC-c-------hhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 33445556 55588888899999998643 32222211 1 445667788777777777888999999999
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccc-cccccc
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLA-EPCAIN 316 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~-~~~~i~ 316 (343)
.+. ....+- .+ ..|.... +.|++..+ .++-+-..|.+.+++.+-. ..-... +...+.
T Consensus 105 n~e-ytqqLE-~g-------g~~s~sl--l~wsKg~~----------el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 105 NSE-YTQQLE-SG-------GTSSKSL--LAWSKGTP----------ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred hhh-hHHHHh-cc-------CcchHHH--HhhccCCc----------cccccccccceEEEeccchhhhhhhccccccee
Confidence 763 222221 11 1233333 77888777 4666667888889887633 333444 346788
Q ss_pred eeeecCCCCCeeEEccCCce
Q 019258 317 SFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~ 336 (343)
.+++.++ ++++.++++..
T Consensus 164 q~av~lE--d~vil~dcd~~ 181 (615)
T KOG2247|consen 164 QIAVTLE--DYVILCDCDNT 181 (615)
T ss_pred EEEeccc--ceeeecCcHHH
Confidence 8999885 35555544443
No 457
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=45.03 E-value=48 Score=17.48 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.3
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~ 195 (343)
..++.++.++.+..+|.+. ++...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~---G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKT---GEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEccc---CcEEE
Confidence 4677888899999999877 55443
No 458
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=44.68 E-value=2.8e+02 Score=26.33 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEccCCC--eEEEEcCCCcEEEEEccCceeeeee
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTSHQS--LVAASTLSGSLHVLSSAMQVLLSVD 108 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~--~l~~~s~dg~v~v~~~~~~~~~~~~ 108 (343)
.++..++.+..++... ...+..+.....+..+.. ....+++.+.+.. +|+.|+..|.=.++.+... .+.+.
T Consensus 220 ~~~~~~lL~~e~G~l~-----~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~-~l~~~ 293 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLY-----LLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS-NLEVL 293 (504)
T ss_dssp TTSSEEEEEETTSEEE-----EEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE-SEEEE
T ss_pred CCCCEEEEEeCCCeEE-----EEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC-CcEEE
Confidence 4667788888887622 222211110001111222 3345666666566 9999998776666666522 22222
Q ss_pred ccCCccccCeEEEEec------CC------EEEEEe---CCCcEEEEE
Q 019258 109 ENSGFHVGPISGVDLT------GS------ECVSVG---EDGRVNLVS 141 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~------~~------~~~s~s---~dg~v~~wd 141 (343)
... ..-+||.++.+. .. .+++++ .+|.+++..
T Consensus 294 ~~~-~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 294 DSL-PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred Eec-cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 211 245789888874 22 666664 567888764
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=44.21 E-value=1.6e+02 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.6
Q ss_pred cCeEEEEec--------CCEEEEEeCCCcEEEEECCC
Q 019258 116 GPISGVDLT--------GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 116 ~~v~~~~~~--------~~~~~s~s~dg~v~~wd~~~ 144 (343)
..+.+++|+ +..|+....+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478889998 45788889999999998654
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=43.87 E-value=2.5e+02 Score=25.43 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=37.1
Q ss_pred cccEEEEEEeecCCCCcCCCCCccceEEEec------------------CCeEEEEecCCCcccccccc-cccceeeecC
Q 019258 262 ESEVWEVQYDCHTKSSNISSSRVLPAMFCSE------------------DGILAVVEQGEEPFELLAEP-CAINSFDIDP 322 (343)
Q Consensus 262 ~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~------------------dg~i~~~~~~~~~~~~~~~~-~~i~s~~~~~ 322 (343)
......+.|.|++.. ++..++. .|.|+.++......+++... ...+.+++++
T Consensus 123 ~~~~~~l~~gpDG~L---------Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~ 193 (367)
T TIGR02604 123 HHSLNSLAWGPDGWL---------YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS 193 (367)
T ss_pred cccccCceECCCCCE---------EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence 345778999998762 3322311 14566666655445555543 4467889988
Q ss_pred CCCCeeEEccCC
Q 019258 323 QNPSDVICSLEW 334 (343)
Q Consensus 323 ~~~~~l~~~~~~ 334 (343)
.|+..++-.++
T Consensus 194 -~G~l~~tdn~~ 204 (367)
T TIGR02604 194 -WGDVFFCDNDD 204 (367)
T ss_pred -CCCEEEEccCC
Confidence 55666554433
No 461
>PLN02193 nitrile-specifier protein
Probab=42.03 E-value=3e+02 Score=25.93 Aligned_cols=104 Identities=8% Similarity=0.038 Sum_probs=48.4
Q ss_pred CCCeEEEEcCC-----CcEEEEEccCceeeeeeccCC-ccccCeEEEE-ecCCEEEEEeCCC-----cEEEEECCCCceE
Q 019258 81 HQSLVAASTLS-----GSLHVLSSAMQVLLSVDENSG-FHVGPISGVD-LTGSECVSVGEDG-----RVNLVSVIGGGEF 148 (343)
Q Consensus 81 ~~~~l~~~s~d-----g~v~v~~~~~~~~~~~~~~~~-~h~~~v~~~~-~~~~~~~s~s~dg-----~v~~wd~~~~~~~ 148 (343)
++.+++.|+.+ ..+..||+...+-..+..... .....-.++. ..++.++.|+.++ .+..||+.+.+ -
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK-W 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE-E
Confidence 55666666654 357777776443222211100 0111112222 3366667776543 35677776652 2
Q ss_pred EEEEc-----CCCccceEEEEeCCCCEEEEEeCC----CcEEEEEccc
Q 019258 149 KRVYD-----GNGLVGFNCVKWASPTEFVTGGFG----YGLQWWDLRR 187 (343)
Q Consensus 149 ~~~~~-----~~~~~~v~~~~~~~~~~l~t~~~d----~~i~iwd~~~ 187 (343)
..... .... .. .+....+..++.++.+ ..+.+||+.+
T Consensus 307 ~~~~~~~~~~~~R~-~~-~~~~~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 307 FHCSTPGDSFSIRG-GA-GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EeCCCCCCCCCCCC-Cc-EEEEECCcEEEEECCCCCccCceEEEECCC
Confidence 22111 0111 11 1222235566666654 4578888866
No 462
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=41.58 E-value=2.6e+02 Score=24.92 Aligned_cols=66 Identities=8% Similarity=-0.054 Sum_probs=31.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCC-CCCCCCCCccCCCCCC-eeEEEccCCCeEEEEcCC-----------CcEEEEEc
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSIS-LPASLTPHSQWTPPTR-ISSLSTSHQSLVAASTLS-----------GSLHVLSS 99 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~-~~~~~~~~~~~~~~~~-v~~v~~~~~~~l~~~s~d-----------g~v~v~~~ 99 (343)
++.+++.|+.... .++.+++. ....+..+..++.... -.++...++.+.+.|+.+ ..+..||.
T Consensus 17 ~~~vyv~GG~~~~----~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~ 92 (346)
T TIGR03547 17 GDKVYVGLGSAGT----SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDP 92 (346)
T ss_pred CCEEEEEccccCC----eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEEC
Confidence 4566777765421 34555652 2223333444332111 122333367777777753 24566676
Q ss_pred cCc
Q 019258 100 AMQ 102 (343)
Q Consensus 100 ~~~ 102 (343)
..+
T Consensus 93 ~~~ 95 (346)
T TIGR03547 93 KKN 95 (346)
T ss_pred CCC
Confidence 543
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.47 E-value=3.3e+02 Score=26.14 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred eEEEEEcCCC--CeEEEEEecCCcEEEEEccCCcee
Q 019258 211 IHSVDIHPSR--KHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 211 i~~v~~~p~~--~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
+..++|||+. ..-+..-+.|..|++||+......
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 6678999976 223345678999999999875443
No 464
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=40.76 E-value=2.3e+02 Score=24.12 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=95.1
Q ss_pred CeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEE-ccccCCC
Q 019258 117 PISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWD-LRRAGSG 191 (343)
Q Consensus 117 ~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd-~~~~~~~ 191 (343)
.+.+.+++ +..++... .++.-.+|-...+.......... .+..-+|.+ +...+....+...+++- ... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~---~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~--g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG---SLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS--GT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC---ccccccccCCCCEEEEEcCCCceEEEEecCC--Cc
Confidence 56677776 66665554 33333444333332233332222 477778888 44444444466666663 222 11
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--ecCCcEEEEEccC-Cce-eeeeecCCCCcccccCCccccEEE
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--GSSGTVFAWDLRW-QQQ-SIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.....+..... . +.|..+.++|+|..+.+.. ..++.|.+=-+.. ... +..+...... .......+.+
T Consensus 100 ~~~~~v~~~~~-~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~----~~~~~~~v~~ 170 (253)
T PF10647_consen 100 GEPVEVDWPGL-R----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV----APPLLSDVTD 170 (253)
T ss_pred ceeEEeccccc-C----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe----cccccCccee
Confidence 11222222210 0 2699999999998776554 2356777765532 222 2222100000 0123467899
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEE-EecCCCccccc-cc--ccccceeeecCCCCCeeEEccCCceEE
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAV-VEQGEEPFELL-AE--PCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~-~~~~~~~~~~~-~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+.|.++... .++....++.+.. +.......+.+ .. ..++.+..-++ .. +...+++.+.
T Consensus 171 v~W~~~~~L---------~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~---~~-~~~t~~~~~~ 232 (253)
T PF10647_consen 171 VAWSDDSTL---------VVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASP---ST-VYVTDDGGVL 232 (253)
T ss_pred eeecCCCEE---------EEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCC---cE-EEEECCCcEE
Confidence 999988763 4445555555555 44332222222 21 23455555444 23 4444555544
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.76 E-value=2.5e+02 Score=24.51 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=47.9
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCC-CCCceeeeeCCCCCCCCCCcc--CCCCCCeeEEEcc--CC-CeEEEEc-CC
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDA-DSPSLETHSISLPASLTPHSQ--WTPPTRISSLSTS--HQ-SLVAAST-LS 91 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~-~~~~l~~w~~~~~~~~~~~~~--~~~~~~v~~v~~~--~~-~~l~~~s-~d 91 (343)
-.|+.|.|.. +.++++.|...-.. ....+..|++........... -..+++|..+.+. +. +..++|. .+
T Consensus 37 G~V~~l~~~~----~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 37 GTVTDLQWAS----NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred EEEEEEEEec----CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 4699999997 67888888643332 345688999866543222221 2456889999886 44 3444554 45
Q ss_pred CcEEEEEcc
Q 019258 92 GSLHVLSSA 100 (343)
Q Consensus 92 g~v~v~~~~ 100 (343)
|...|...+
T Consensus 113 g~~~l~~~d 121 (281)
T PF12768_consen 113 GSTFLMKYD 121 (281)
T ss_pred CCceEEEEc
Confidence 555555444
No 466
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=39.15 E-value=2.3e+02 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=22.7
Q ss_pred cCeEEEEEc------CCCCeEEEEEecCCcEEEEEccC
Q 019258 209 GMIHSVDIH------PSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 209 ~~i~~v~~~------p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
..|+|++-- ++....++.|+++|.|++.|-..
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a 214 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA 214 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh
Confidence 446665532 33446788999999999999765
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=38.96 E-value=2.8e+02 Score=24.68 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=36.2
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCC---CCeEEEEEe
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPS---RKHTCLAGG 228 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~~~sg~ 228 (343)
..++|+|.|...++.+...|.|++++... .. .++..+.... ..+. .-...++++|+ ...++++.+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g--~~~~~v~~~~~v~-~~~~--~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDG--SLKTPVADLPEVF-ADGE--RGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTT--EECEEEEE-TTTB-TSTT--BSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCC--cCcceeccccccc-cccc--CCcccceeccccCCCCEEEEEEE
Confidence 36789999955666677799999999322 11 1222221111 0111 55899999994 234555544
No 468
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=37.77 E-value=1.9e+02 Score=29.22 Aligned_cols=172 Identities=16% Similarity=0.086 Sum_probs=92.2
Q ss_pred CCCCccccCCcccceeeEEecCC-----C----CC--------CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc--
Q 019258 7 RTPPQVHRFPQSKYIDAVRWLPP-----L----SP--------LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-- 67 (343)
Q Consensus 7 ~~~~~~~~~~~~~~i~~v~w~p~-----~----~~--------~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-- 67 (343)
..|..+.-|+....+.++.+.|. . .+ .-.....|+.++ ++-++.-..+...++...
T Consensus 503 stP~~v~cf~~~~r~lcm~y~Ps~ee~~~sp~a~P~~~~~~as~~PTic~gtq~s-----sisissss~~s~ke~~~~~~ 577 (925)
T KOG3522|consen 503 STPNGVGCFSFGGRNLCMSYLPSLEELTQSPTAVPETPDTQASPHPTICLGTQTS-----SISISSSSLDSIKEVTSEPP 577 (925)
T ss_pred CCCCcccceeecccccchhhCcchhhccCCCCCCCCCcccccCCCCcccccCccc-----eeEEeeccCCcccceeccCC
Confidence 34556777777888888888882 0 01 112333343332 233544432222222222
Q ss_pred CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCce--eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQV--LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+....+.++.|+ ...+..|.-||++-.|--.... .............+|.+..+. +-++-++.+|.|.++...+.
T Consensus 578 spe~~~v~~l~~s-s~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~-ed~~was~gG~V~vi~~tt~ 655 (925)
T KOG3522|consen 578 SPEHESVKLLLFS-SGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQ-EDFVWASEGGCVHVIPSTTF 655 (925)
T ss_pred CCchhhhhhhhcc-ccccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhh-hceeeeecCCceEEEechhc
Confidence 2333456677666 3445566667777666432100 000011111233467766664 34566788999999988763
Q ss_pred ceEEE---EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 019258 146 GEFKR---VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 146 ~~~~~---~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~ 187 (343)
..... ..+.+. .|+++.+.....+++-.....+++++...
T Consensus 656 ~~~~~leahqee~~--~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 656 IRSWDLEAHQEEAH--SVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred cccchhHHHHhhcc--eEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 21111 112222 59999888877777777777788776654
No 469
>PLN02153 epithiospecifier protein
Probab=36.70 E-value=3.1e+02 Score=24.42 Aligned_cols=69 Identities=7% Similarity=-0.053 Sum_probs=31.9
Q ss_pred CCCeEEEEeecCCCC--CCceeeeeCCCCCCCCCCccCCC-CC-Ce--eEEEccCCCeEEEEcCC-----CcEEEEEccC
Q 019258 33 LSKLAVLAIYDTDAD--SPSLETHSISLPASLTPHSQWTP-PT-RI--SSLSTSHQSLVAASTLS-----GSLHVLSSAM 101 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~--~~~l~~w~~~~~~~~~~~~~~~~-~~-~v--~~v~~~~~~~l~~~s~d-----g~v~v~~~~~ 101 (343)
++.+++.|+.+.... .-.++.+|+..+.. ........ +. .. .++...++.+++.|+.+ ..+.+||...
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEE-EEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 356778887753211 12366777655332 22221111 11 00 11222255666666643 2567787764
Q ss_pred c
Q 019258 102 Q 102 (343)
Q Consensus 102 ~ 102 (343)
.
T Consensus 111 ~ 111 (341)
T PLN02153 111 N 111 (341)
T ss_pred C
Confidence 3
No 470
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.25 E-value=64 Score=18.14 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCeEEEEcCCCcEEEEEcc
Q 019258 81 HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~ 100 (343)
.++.++.++.||.++.+|..
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46789999999999998864
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=36.22 E-value=1.5e+02 Score=20.69 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
++.+..+|.+..||.++ +....+ .+. ..-+.|+++|++..++++=+.-.+|.-+
T Consensus 30 ~le~~~~GRll~ydp~t----~~~~vl~~~L--------~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPST----KETTVLLDGL--------YFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp HHHT---EEEEEEETTT----TEEEEEEEEE--------SSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred eecCCCCcCEEEEECCC----CeEEEehhCC--------CccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 33445578888899877 333332 222 4588999999999888775555554433
No 472
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=35.98 E-value=82 Score=17.57 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
.+..++.+|.|.-.|.++ ++.+.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~T---G~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKT---GKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTT---TSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCC---CCEEEeeeC
Confidence 456678899999999999 887777663
No 473
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=35.95 E-value=3.5e+02 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|.+|...+... .+++.+.+|.|.+|+...
T Consensus 190 ~~I~~v~~d~~r~----------~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR----------LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT----------EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC----------EEEEEeCCCcEEEEEEeC
Confidence 3488898887765 799999999999999754
No 474
>PRK13684 Ycf48-like protein; Provisional
Probab=35.87 E-value=3.2e+02 Score=24.39 Aligned_cols=152 Identities=10% Similarity=0.012 Sum_probs=78.3
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.+.++.+.+...++..+..|.+..- .+. .++......... . ..++++.+.|+++. ++. +..|.+.+=.-
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s-~~~--gg~tW~~~~~~~--~----~~l~~i~~~~~g~~-~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYST-WEP--GQTAWTPHQRNS--S----RRLQSMGFQPDGNL-WML-ARGGQIRFNDP 242 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEE-cCC--CCCeEEEeeCCC--c----ccceeeeEcCCCCE-EEE-ecCCEEEEccC
Confidence 5888998886667777777765531 112 123333333222 1 56899999998764 344 45676643212
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccc--c--ccc
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLA--E--PCA 314 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~--~--~~~ 314 (343)
..+ ......... ...-...+.++.+.|++ .++.++.+|.++.-....+..+... . +..
T Consensus 243 d~G-~sW~~~~~~------~~~~~~~l~~v~~~~~~-----------~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~ 304 (334)
T PRK13684 243 DDL-ESWSKPIIP------EITNGYGYLDLAYRTPG-----------EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSN 304 (334)
T ss_pred CCC-CccccccCC------ccccccceeeEEEcCCC-----------CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcc
Confidence 221 111111000 00012357788898854 3677888887765222111211111 1 234
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+.+.+..+ +..+..++.|.|--++
T Consensus 305 ~~~~~~~~~--~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 305 FYKIVFLDP--EKGFVLGQRGVLLRYV 329 (334)
T ss_pred eEEEEEeCC--CceEEECCCceEEEec
Confidence 666666542 3445556677776553
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.29 E-value=6e+02 Score=27.39 Aligned_cols=29 Identities=3% Similarity=-0.101 Sum_probs=25.4
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
+|..+.... .+.+.+-+..++|..||+..
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccC
Confidence 788998887 77788888999999999976
No 476
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.12 E-value=69 Score=16.52 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=12.7
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
...+++.++| .++++-+.+..|.+
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEE
Confidence 3456666554 34555555555554
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=34.34 E-value=4.8e+02 Score=25.96 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=105.6
Q ss_pred CCCccccCC--cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCC--C------CCCCCCCccCCCCCCeeEE
Q 019258 8 TPPQVHRFP--QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS--L------PASLTPHSQWTPPTRISSL 77 (343)
Q Consensus 8 ~~~~~~~~~--~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~--~------~~~~~~~~~~~~~~~v~~v 77 (343)
.|..+|.+| ....|.|+.-.-.. ...+..+.|-.++... ++-+-... . .........+.....|.++
T Consensus 59 TPKLiwsypi~pt~iV~~~dV~~~~-~~~~~~~~glt~rKk~--~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~I 135 (670)
T PF10395_consen 59 TPKLIWSYPISPTTIVECCDVLEKS-DGKKLYCVGLTERKKF--KLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGI 135 (670)
T ss_pred CcceeEeeccCcCceEEEEEeEecC-CCcEEEEEEEeeCCee--EEEEEEccCccccccccCccccceEEEEcccceEEE
Confidence 355677665 44567777554421 1246677776665422 22222222 0 0111112233456789999
Q ss_pred Ecc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccc------cCeEEEEec--CCEEEEEeC-C---CcEEEEEC--
Q 019258 78 STS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHV------GPISGVDLT--GSECVSVGE-D---GRVNLVSV-- 142 (343)
Q Consensus 78 ~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~------~~v~~~~~~--~~~~~s~s~-d---g~v~~wd~-- 142 (343)
.|. ++..+++...+|.|.+|+......-.+......+. .-|...... .+.+++.+. + -+.+++.+
T Consensus 136 k~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~ 215 (670)
T PF10395_consen 136 KFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSN 215 (670)
T ss_pred EEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEecc
Confidence 999 88999999999999999993211110001111122 223333321 344444443 2 24567777
Q ss_pred CCCceEEEEE--cCCCccceEE--EEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 143 IGGGEFKRVY--DGNGLVGFNC--VKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~v~~--~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
++. .+..+. ..... .... ++|..+.. . .=.+++|.+|++.. .+...++....--.+.. ..+.++.. |
T Consensus 216 ~~~-~~~El~s~~~e~~-~~~~s~f~Y~~G~L-Y-~l~~~~i~~ysip~---f~~~~tI~l~~ii~~~~-~~~vSl~~-~ 286 (670)
T PF10395_consen 216 ESS-SIFELSSTILENF-GLEDSKFCYQFGKL-Y-QLSKKTISSYSIPN---FQIQKTISLPSIIDKES-DDLVSLKP-P 286 (670)
T ss_pred CCc-ceEEeehheeccC-CcccceEEEeCCEE-E-EEeCCEEEEEEcCC---ceEEEEEEechhhcccc-ccceEeec-C
Confidence 222 222221 00110 1222 33333322 2 22788999999976 44444443221000000 12333332 2
Q ss_pred CCCeEEEEEecCCcEEEEEccC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+...+++ +.+.+|++.|+.-
T Consensus 287 s~nRvLL--s~~nkIyLld~~~ 306 (670)
T PF10395_consen 287 SPNRVLL--SVNNKIYLLDLKF 306 (670)
T ss_pred CCCeEEE--EcCCEEEEEeehh
Confidence 2234554 4567999999865
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=5.5e+02 Score=26.54 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCcEEEEEccCce---eeee----ecc-CCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCC
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQV---LLSV----DEN-SGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~---~~~~----~~~-~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~ 145 (343)
-++.+.+|+.+|.+.+|.+.+.. .... ... ...++.+|+.+... ...++-.-.|+.+.++++.+.
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 47899999999999999987321 1111 000 11245677777666 555555666777888888764
No 479
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=33.58 E-value=1e+02 Score=17.99 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=24.5
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
....+.+.++++..+..++-+.+.|+.+...+.
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDISNPSNPV 35 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEECCCCCCCE
Confidence 345666778888888777779999998865443
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=33.10 E-value=4e+02 Score=24.63 Aligned_cols=111 Identities=19% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce-----eeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEE
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV-----LLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd 141 (343)
+....+.++.|. ++.++++ +.+|.+..-+ .... .+...... .-...+.++.+. .+.++.++..|.+....
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~-g~~G~l~~S~-d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLL-TRGGGLYVSK-GTGLTEEDFDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST 354 (398)
T ss_pred CCccceeeeeEcCCCCEEEE-eCCceEEEec-CCCCcccccceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC
Confidence 445678899998 5555544 4666654322 2221 11111110 011357888887 77888889999776654
Q ss_pred CCCCceEEEEEc-CCCccceEEEEeCCCCEEEEEeCCCcEEEE
Q 019258 142 VIGGGEFKRVYD-GNGLVGFNCVKWASPTEFVTGGFGYGLQWW 183 (343)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~t~~~d~~i~iw 183 (343)
+.++.-..... ..-...++.+.|.+.+.....+.+|.|.-|
T Consensus 355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred -CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 34432222210 111125889998876666777788887655
No 481
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=32.12 E-value=1.7e+02 Score=29.57 Aligned_cols=142 Identities=9% Similarity=-0.017 Sum_probs=76.6
Q ss_pred CeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEE--------EECCCCceEEEEEc
Q 019258 83 SLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNL--------VSVIGGGEFKRVYD 153 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~--------wd~~~~~~~~~~~~ 153 (343)
..+.+|+.++.+.+|.-. ........+....-...+.++.+....+..|.-||++-+ ||.+ . .+.+
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~e-p--~~~~-- 622 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGE-P--NISI-- 622 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCC-C--cccc--
Confidence 457888889999998765 111111122221233456666665445555555665544 4443 1 1111
Q ss_pred CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 154 GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 154 ~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
..+..++....+. .-++-++.+|.|.++.... .........+..+. ..|+++.+..++-++.++ ..-.+
T Consensus 623 ~~g~lPvrsla~~--ed~~was~gG~V~vi~~tt---~~~~~~leahqee~----~~Vthm~~~~~gVwvafa--sG~~~ 691 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQ--EDFVWASEGGCVHVIPSTT---FIRSWDLEAHQEEA----HSVTHMLYLDNGVWVAFA--SGDEE 691 (925)
T ss_pred ccCCccccchhhh--hceeeeecCCceEEEechh---ccccchhHHHHhhc----ceEEEEEeeCCceEEEEc--CCCEE
Confidence 1222246665543 3477788999999999877 34444444443222 669999988776443222 22245
Q ss_pred EEEEccC
Q 019258 234 FAWDLRW 240 (343)
Q Consensus 234 ~iwd~~~ 240 (343)
++++..+
T Consensus 692 rlfhtet 698 (925)
T KOG3522|consen 692 RLFHTET 698 (925)
T ss_pred EEecccc
Confidence 5555444
No 482
>PLN02153 epithiospecifier protein
Probab=31.70 E-value=3.7e+02 Score=23.88 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=8.0
Q ss_pred CcEEEEECCCC
Q 019258 135 GRVNLVSVIGG 145 (343)
Q Consensus 135 g~v~~wd~~~~ 145 (343)
..+.+||..+.
T Consensus 217 ~~v~~yd~~~~ 227 (341)
T PLN02153 217 NAVQFFDPASG 227 (341)
T ss_pred CceEEEEcCCC
Confidence 35788888775
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=30.70 E-value=4.7e+02 Score=26.64 Aligned_cols=133 Identities=13% Similarity=0.005 Sum_probs=65.4
Q ss_pred EEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC-----cEEEE
Q 019258 24 VRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG-----SLHVL 97 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg-----~v~v~ 97 (343)
|.|.- +.++++.+.-....+ -.+++++-++... -.+-+..|.-..+.|- .+..+++-..|| .|..+
T Consensus 207 i~wrg----D~~y~~v~r~Ee~pr-ra~rvysreg~ld---s~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFf 278 (1243)
T COG5290 207 IFWRG----DTEYNLVGRSEERPR-RAFRVYSREGQLD---SASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFF 278 (1243)
T ss_pred EEEcc----Ccceeeecchhcccc-cceeeeccccccc---cccCCcccchhccccccCCceeeeeccCCCCCcceEEEE
Confidence 56766 666666665432211 1345665432111 0111223333445666 667777766544 34444
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.-+..+.-.. ....+....+..+.|+ ...+......+.+++|-..+-.-..+...... .+.-++|+|
T Consensus 279 ErNGLrHGef-~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip--~~s~vkwhp 346 (1243)
T COG5290 279 ERNGLRHGEF-DLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIP--GISYVKWHP 346 (1243)
T ss_pred ccCCcccCCc-cccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCC--Ccceeeecc
Confidence 4331100000 0001123456777887 55555566777899999877432222221122 477789998
No 484
>PLN02193 nitrile-specifier protein
Probab=30.18 E-value=4.7e+02 Score=24.64 Aligned_cols=151 Identities=12% Similarity=0.028 Sum_probs=67.1
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC---CCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeee
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQW---TPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLS 106 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~ 106 (343)
.+++.|+.+.....-.++.+|+.... +..+... +.+-.-.++...++.+++.|+.++ .+..||+.+.+-..
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 45566666543222245666665432 2222221 111111122222556666666543 35667765433221
Q ss_pred eecc--CCccccCeEEEEecCCEEEEEeCC----CcEEEEECCCCceEEEEEcC---CCccceEEEEeCCCCEEEEEeCC
Q 019258 107 VDEN--SGFHVGPISGVDLTGSECVSVGED----GRVNLVSVIGGGEFKRVYDG---NGLVGFNCVKWASPTEFVTGGFG 177 (343)
Q Consensus 107 ~~~~--~~~h~~~v~~~~~~~~~~~s~s~d----g~v~~wd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~t~~~d 177 (343)
+... ............+.++.++.++.+ ..+.++|+.+.+ -..+... +......++.......++.|+.+
T Consensus 309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 1110 000111112223347777777755 457888988763 2222111 11001222222235677777753
Q ss_pred --------------CcEEEEEccc
Q 019258 178 --------------YGLQWWDLRR 187 (343)
Q Consensus 178 --------------~~i~iwd~~~ 187 (343)
+.+.++|+.+
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred CCccccccCccceeccEEEEEcCc
Confidence 2467777765
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.94 E-value=5.3e+02 Score=24.83 Aligned_cols=113 Identities=16% Similarity=0.001 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE----------EEeCCCCEEEEEeCCCcEEEEEccccCCCCCe
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC----------VKWASPTEFVTGGFGYGLQWWDLRRAGSGGPV 194 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~----------~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 194 (343)
+..++.++.++.|.-.|..+++..-+....... .+.. +.+. ...++.++.|+.|.-.|.++ ++.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~T---Gk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKT---GKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCc-ccccccccccccccceEE-CCEEEEEcCCCEEEEEECCC---CCEE
Confidence 667777777888998999888544333211111 1111 1111 45677888899999999988 7777
Q ss_pred eEEecccCCCCCcccCeEE-EEEcCCCCeEEEEEe------cCCcEEEEEccCCceeeeee
Q 019258 195 LQFKGNFGSQGKASGMIHS-VDIHPSRKHTCLAGG------SSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~-v~~~p~~~~~~~sg~------~dg~v~iwd~~~~~~~~~~~ 248 (343)
.+......... ..+.+ -.+. + ..++ .+. .+|.|.-+|.++++......
T Consensus 144 W~~~~~~~~~~---~~~tssP~v~-~-g~Vi-vg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAG---YTITAAPLVV-K-GKVI-TGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eeccccccccc---ccccCCcEEE-C-CEEE-EeecccccCCCcEEEEEECCCCceeEecc
Confidence 66542210000 01111 1111 2 2333 443 26899999999887665544
No 486
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=28.01 E-value=4.3e+02 Score=23.45 Aligned_cols=11 Identities=27% Similarity=0.069 Sum_probs=7.3
Q ss_pred CCCeEEEEeec
Q 019258 33 LSKLAVLAIYD 43 (343)
Q Consensus 33 ~~~~l~t~s~D 43 (343)
++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~ 73 (346)
T TIGR03547 63 DGKLYVFGGIG 73 (346)
T ss_pred CCEEEEEeCCC
Confidence 45677777764
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=27.11 E-value=4.8e+02 Score=23.66 Aligned_cols=66 Identities=8% Similarity=-0.062 Sum_probs=30.4
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCC-CCCCCCCccCCCCCCe-eEEEccCCCeEEEEcCCC-----------cEEEEEc
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQWTPPTRI-SSLSTSHQSLVAASTLSG-----------SLHVLSS 99 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~-~~~~~~~~~~~~~~~v-~~v~~~~~~~l~~~s~dg-----------~v~v~~~ 99 (343)
++.+++.|+.+.. .++.+++.. ...+..+..++..... .++...++.+++.|+.+. .+..||.
T Consensus 38 ~~~iyv~gG~~~~----~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~ 113 (376)
T PRK14131 38 NNTVYVGLGSAGT----SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113 (376)
T ss_pred CCEEEEEeCCCCC----eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeC
Confidence 3566666655322 355666642 1223333333321121 122222566777776532 4666776
Q ss_pred cCc
Q 019258 100 AMQ 102 (343)
Q Consensus 100 ~~~ 102 (343)
...
T Consensus 114 ~~n 116 (376)
T PRK14131 114 KTN 116 (376)
T ss_pred CCC
Confidence 543
No 488
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=26.07 E-value=2.3e+02 Score=28.49 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.6
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~ 143 (343)
-++++.-+ .+..++.+..||.|.+|+........+.. -..|-..+.+...-+++...|..+.-|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~----~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE----EAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh----hcCCccceeeeccceEEEeccchhheeecc
Confidence 35566655 67789999999999999986322111111 112334455555557777777777777643
No 489
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=25.19 E-value=6e+02 Score=24.15 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCCeEEEEeecCCCCCCc--eeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCC------cEEEEEccCc
Q 019258 33 LSKLAVLAIYDTDADSPS--LETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSG------SLHVLSSAMQ 102 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~--l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg------~v~v~~~~~~ 102 (343)
.+.+++-|+.-....... |++.++.........+.-..+.+......+ +..+++-|+.+. .+..+|+.+.
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~ 149 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTR 149 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCC
Confidence 456666665433222223 556666543333222222222232222222 566777777774 7777877644
Q ss_pred eeeeeeccCC-ccccCeEEEEecCC-EEEEEeC------CCcEEEEECCCCceEEEEEc-CCCcc--ceEEEEeCCCCEE
Q 019258 103 VLLSVDENSG-FHVGPISGVDLTGS-ECVSVGE------DGRVNLVSVIGGGEFKRVYD-GNGLV--GFNCVKWASPTEF 171 (343)
Q Consensus 103 ~~~~~~~~~~-~h~~~v~~~~~~~~-~~~s~s~------dg~v~~wd~~~~~~~~~~~~-~~~~~--~v~~~~~~~~~~l 171 (343)
+-........ .....-+++...++ .++.|+. ...+.++|+.+.+ -.+... +..-. .-..+.......+
T Consensus 150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~-W~~~~~~g~~P~pR~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST-WSELDTQGEAPSPRYGHAMVVVGNKLL 228 (482)
T ss_pred cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccc-ceecccCCCCCCCCCCceEEEECCeEE
Confidence 3222221110 11112223333334 4445543 3457788887753 222211 11110 1122222335667
Q ss_pred EEEeCC-C-----cEEEEEccc
Q 019258 172 VTGGFG-Y-----GLQWWDLRR 187 (343)
Q Consensus 172 ~t~~~d-~-----~i~iwd~~~ 187 (343)
+.++.+ + -+.+.|+.+
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~ 250 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLST 250 (482)
T ss_pred EEeccccCCceecceEeeeccc
Confidence 777776 2 344555544
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.55 E-value=8.6e+02 Score=25.76 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=24.1
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCC
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTD 45 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~ 45 (343)
.-+.++..+.+.+.+++.| ...+++.|+..+.
T Consensus 27 ~~~~~~G~~~~~~~~afD~----~q~llai~t~tg~ 58 (993)
T KOG1983|consen 27 DKTNRHGFPSTPSALAFDP----TQGLLAIGTRTGA 58 (993)
T ss_pred ccceecCCCCCCcceeecc----ccceEEEEEeccc
Confidence 3445555666788888888 7889999998865
No 491
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=24.40 E-value=9.6e+02 Score=26.28 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=22.4
Q ss_pred CCccccCeEEEEec---------CCEEEEEeCCCcEEEEECC
Q 019258 111 SGFHVGPISGVDLT---------GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 111 ~~~h~~~v~~~~~~---------~~~~~s~s~dg~v~~wd~~ 143 (343)
..+|+.+|.|...+ ....+..+.||.+.+=|.+
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 34677777776665 2234567899999987764
No 492
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=9.8e+02 Score=25.92 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=48.4
Q ss_pred ccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC-------CCCe-----------eEEecccCCCCCcccCeEEEEEcC
Q 019258 157 LVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS-------GGPV-----------LQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 157 ~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-------~~~~-----------~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
...|.|+.+...++++-+|.|| .+|.+--... .+.+ .++.... +.+..+|..+..+.
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~---~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP---GSSKDPIRQITIDN 252 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC---CCCCCcceeeEecc
Confidence 3368999966666677777777 6676532000 0000 0011000 11126899999987
Q ss_pred CCCeEEEEEecCCcEEEEEccC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
. +.++.+=++.|+|..||+..
T Consensus 253 S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 S-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-cceeeeeccCceEEEEEccC
Confidence 5 56888889999999999976
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.99 E-value=8.1e+02 Score=24.90 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=78.0
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
.+.+.+|.-+| .+.-++++++|+. |.++++....+.+ ++.. ..+-..+.|. ..-|++.++|..+.-|
T Consensus 14 ~e~~~aiqshp----~~~s~v~~~~d~s-----i~lfn~~~r~qsk-i~~~--~~p~~nlv~t-nhgl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 14 DEFTTAIQSHP----GGQSFVLAHQDGS-----IILFNFIPRRQSK-ICEE--AKPKENLVFT-NHGLVTATSDRRALAW 80 (1636)
T ss_pred cceeeeeeecC----CCceEEEEecCCc-----EEEEeecccchhh-hhhh--cCCccceeee-ccceEEEeccchhhee
Confidence 45678888888 7788999999964 6788884432211 1211 1222334444 2335666666666666
Q ss_pred Ecc----------Cce--eeeeeccC-------CccccCeEEEEec------CCEE-EEEeCCCcEEEEECCCCceEEEE
Q 019258 98 SSA----------MQV--LLSVDENS-------GFHVGPISGVDLT------GSEC-VSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 98 ~~~----------~~~--~~~~~~~~-------~~h~~~v~~~~~~------~~~~-~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
.-. +.. ++...... ..--+.|..++.+ .+.| .+-=.-..|.+=|+.++.. ..
T Consensus 81 ~~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~tr--t~ 158 (1636)
T KOG3616|consen 81 KEDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTR--TN 158 (1636)
T ss_pred eccCcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCce--Ee
Confidence 432 111 11100000 0011334444433 1111 1111223466667766532 22
Q ss_pred EcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 019258 152 YDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~ 187 (343)
...|....|.-++.....+.+.+-...+|.+=|+.+
T Consensus 159 l~s~~g~aidelkilgkdryli~~ts~siii~d~es 194 (1636)
T KOG3616|consen 159 LISHKGLAIDELKILGKDRYLIAHTSESIIIADLES 194 (1636)
T ss_pred eeecCCcchhhhhhccccceEEeeccccEEEeeccc
Confidence 223443356666666655566676777888888876
No 494
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.10 E-value=6.2e+02 Score=23.26 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=46.6
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeC---CCc-EEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGF---GYG-LQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
+.|..-|+.++. ...++.... .+.-+.|+| +..+.-|-. +.. -|||-++. .+.....+..+.. .
T Consensus 168 ~~i~~idl~tG~-~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~~~-~---- 237 (386)
T PF14583_consen 168 CRIFTIDLKTGE-RKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRRME-G---- 237 (386)
T ss_dssp EEEEEEETTT---EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EESS---T-T----
T ss_pred ceEEEEECCCCc-eeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceeeecCCC-C----
Confidence 445666777773 555554443 477888999 555555433 332 47888877 3444444432221 1
Q ss_pred cCeEEEEEcCCCCeEEEEEe----cCCcEEEEEccCCc
Q 019258 209 GMIHSVDIHPSRKHTCLAGG----SSGTVFAWDLRWQQ 242 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~----~dg~v~iwd~~~~~ 242 (343)
..+.-=-|.|+|..+..-+. .+..|.-+|+.+.+
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 33444457788876655333 24456667777643
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.64 E-value=6.8e+02 Score=23.13 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=61.4
Q ss_pred cCeEEEEec-CCEEEEEeCCCcEEEEECCCCc-----eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccC
Q 019258 116 GPISGVDLT-GSECVSVGEDGRVNLVSVIGGG-----EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 116 ~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
..+.++.+. +..++.++.+|.+.. ....+. .............+.++.|.+.+.++.++..|.+....-
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D---- 355 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD---- 355 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC----
Confidence 467888887 555666667776544 333331 111111111222588899888777888888887776532
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.++............ ...+.+.|.+++. .+ ..+.+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~----~~ly~v~f~~~~~-g~-~~G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIA----ANLYSVKFFDDKK-GF-VLGNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCC----cceeEEEEcCCCc-eE-EEeCCcEEEEe
Confidence 233333322111101 5688999877544 33 34678887655
No 496
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=20.44 E-value=9.7e+02 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.2
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEee
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY 42 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~ 42 (343)
.+.+.+..+.+.++.++| .+.+++.|+.
T Consensus 901 p~k~~~~~Ktlqklvyh~----~~~~~~Vgsc 928 (1319)
T COG5161 901 PVKRTPKHKTLQKLVYHC----AGRYMVVGSC 928 (1319)
T ss_pred ceeeccccccccceeeec----cceEEEEEee
Confidence 566777889999999999 7788888874
Done!