Query 019260
Match_columns 343
No_of_seqs 147 out of 1240
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.1E-85 2.3E-90 632.6 22.2 309 30-342 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.1E-48 2.4E-53 358.7 22.8 251 26-334 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 1.1E-08 2.4E-13 99.6 20.4 245 44-341 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.8 1.1E-07 2.3E-12 91.2 15.3 158 29-206 29-217 (314)
5 COG3867 Arabinogalactan endo-1 98.7 4.9E-07 1.1E-11 85.7 13.8 245 44-341 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.4 0.00012 2.7E-09 76.9 25.7 255 29-339 294-584 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.00017 3.7E-09 67.2 16.7 208 28-272 9-251 (281)
8 smart00633 Glyco_10 Glycosyl h 97.9 0.002 4.4E-08 60.4 19.2 212 67-340 20-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.5 0.0036 7.7E-08 58.4 15.2 164 113-336 64-232 (239)
10 TIGR03356 BGL beta-galactosida 97.0 0.17 3.6E-06 51.4 21.5 44 46-89 58-120 (427)
11 PF02836 Glyco_hydro_2_C: Glyc 97.0 0.049 1.1E-06 52.1 16.6 96 29-124 17-132 (298)
12 PF02449 Glyco_hydro_42: Beta- 96.7 0.21 4.6E-06 49.4 18.9 80 45-124 13-138 (374)
13 PF00232 Glyco_hydro_1: Glycos 95.0 0.015 3.2E-07 59.3 2.5 279 45-339 61-442 (455)
14 PRK10340 ebgA cryptic beta-D-g 94.6 1.8 3.8E-05 48.8 17.8 98 29-126 336-452 (1021)
15 cd02875 GH18_chitobiase Chitob 88.8 4 8.6E-05 40.4 10.6 134 55-207 55-191 (358)
16 PRK09525 lacZ beta-D-galactosi 87.9 45 0.00097 37.9 19.2 97 29-125 352-464 (1027)
17 cd02874 GH18_CFLE_spore_hydrol 86.9 6.5 0.00014 37.7 10.6 125 66-207 48-181 (313)
18 PF03662 Glyco_hydro_79n: Glyc 86.0 2.8 6E-05 41.0 7.4 174 68-272 114-300 (319)
19 COG3934 Endo-beta-mannanase [C 84.9 2.6 5.6E-05 43.3 6.8 179 101-340 125-312 (587)
20 PRK13511 6-phospho-beta-galact 83.2 1.9 4.1E-05 44.4 5.2 70 258-334 369-445 (469)
21 PLN02998 beta-glucosidase 79.3 2.6 5.6E-05 43.7 4.6 75 255-335 390-466 (497)
22 PF01229 Glyco_hydro_39: Glyco 79.2 81 0.0018 32.4 17.5 245 50-337 48-350 (486)
23 PLN02814 beta-glucosidase 79.1 2.7 5.8E-05 43.7 4.7 74 255-335 385-461 (504)
24 PLN02849 beta-glucosidase 76.7 3.5 7.5E-05 42.8 4.7 75 255-335 383-461 (503)
25 PF02055 Glyco_hydro_30: O-Gly 75.6 33 0.00072 35.6 11.5 62 101-162 209-283 (496)
26 cd02872 GH18_chitolectin_chito 73.8 20 0.00043 35.1 9.0 115 75-207 69-192 (362)
27 cd00598 GH18_chitinase-like Th 73.3 11 0.00024 33.4 6.5 83 67-150 53-142 (210)
28 PRK09593 arb 6-phospho-beta-gl 73.0 7.4 0.00016 40.2 5.9 72 258-335 369-448 (478)
29 PRK09589 celA 6-phospho-beta-g 72.0 10 0.00022 39.2 6.6 72 258-335 368-447 (476)
30 COG4782 Uncharacterized protei 67.3 20 0.00043 35.7 7.2 58 234-294 124-185 (377)
31 PF00925 GTP_cyclohydro2: GTP 67.2 6.4 0.00014 34.7 3.5 37 48-84 132-168 (169)
32 PRK15014 6-phospho-beta-glucos 66.6 8.1 0.00018 39.9 4.6 72 258-335 369-448 (477)
33 PF12876 Cellulase-like: Sugar 66.1 15 0.00032 28.6 5.0 48 111-160 7-64 (88)
34 PRK09852 cryptic 6-phospho-bet 66.1 17 0.00037 37.5 6.8 72 258-335 366-444 (474)
35 cd02876 GH18_SI-CLP Stabilin-1 65.4 78 0.0017 30.4 11.0 126 67-207 55-191 (318)
36 cd06545 GH18_3CO4_chitinase Th 64.4 21 0.00046 33.2 6.7 81 67-150 50-133 (253)
37 smart00481 POLIIIAc DNA polyme 63.7 25 0.00053 25.5 5.6 45 41-85 14-63 (67)
38 TIGR01233 lacG 6-phospho-beta- 61.4 10 0.00022 39.0 4.2 72 258-335 368-444 (467)
39 PRK09936 hypothetical protein; 61.2 59 0.0013 31.5 9.0 62 26-87 18-96 (296)
40 PF05990 DUF900: Alpha/beta hy 55.1 34 0.00074 31.6 6.3 41 251-294 43-87 (233)
41 PF00704 Glyco_hydro_18: Glyco 54.2 92 0.002 29.6 9.3 118 73-207 70-196 (343)
42 smart00636 Glyco_18 Glycosyl h 53.4 55 0.0012 31.4 7.7 124 69-207 57-188 (334)
43 PF06117 DUF957: Enterobacteri 53.3 33 0.00072 25.5 4.6 42 95-148 10-55 (65)
44 PRK00393 ribA GTP cyclohydrola 53.1 21 0.00046 32.3 4.4 33 48-80 134-166 (197)
45 PF13547 GTA_TIM: GTA TIM-barr 52.7 25 0.00054 33.9 4.9 86 112-211 17-115 (299)
46 TIGR00505 ribA GTP cyclohydrol 52.6 22 0.00048 32.0 4.4 33 48-80 131-163 (191)
47 PF04909 Amidohydro_2: Amidohy 47.9 53 0.0011 29.7 6.3 53 135-202 84-137 (273)
48 TIGR01579 MiaB-like-C MiaB-lik 47.8 2.9E+02 0.0063 27.6 12.1 138 41-208 166-330 (414)
49 KOG0626 Beta-glucosidase, lact 46.9 48 0.001 34.6 6.3 81 252-339 402-498 (524)
50 PRK14326 (dimethylallyl)adenos 43.7 3.4E+02 0.0075 28.1 12.1 144 30-205 176-346 (502)
51 PRK14334 (dimethylallyl)adenos 43.0 3.1E+02 0.0068 27.7 11.5 135 42-206 167-327 (440)
52 PF14587 Glyco_hydr_30_2: O-Gl 42.8 3.7E+02 0.008 27.1 12.3 93 67-163 108-229 (384)
53 cd02879 GH18_plant_chitinase_c 42.6 3.1E+02 0.0067 26.2 11.4 74 74-148 64-142 (299)
54 cd00641 GTP_cyclohydro2 GTP cy 42.2 39 0.00085 30.4 4.4 36 48-83 133-168 (193)
55 PRK14332 (dimethylallyl)adenos 41.0 4.1E+02 0.0089 27.1 12.7 192 41-267 182-397 (449)
56 PF14871 GHL6: Hypothetical gl 41.0 68 0.0015 27.2 5.4 43 44-86 2-67 (132)
57 PF06180 CbiK: Cobalt chelatas 40.7 3.3E+02 0.0071 25.9 11.1 140 40-208 56-208 (262)
58 PRK12485 bifunctional 3,4-dihy 40.4 34 0.00074 34.2 4.0 33 48-81 331-363 (369)
59 PRK14336 (dimethylallyl)adenos 39.8 4.1E+02 0.0088 26.8 14.2 137 41-207 152-315 (418)
60 PF00331 Glyco_hydro_10: Glyco 38.3 31 0.00068 33.5 3.3 217 66-339 62-312 (320)
61 COG0621 MiaB 2-methylthioadeni 37.7 1.3E+02 0.0027 30.9 7.6 62 127-207 275-336 (437)
62 PRK14019 bifunctional 3,4-dihy 37.2 42 0.0009 33.6 4.0 35 48-83 328-362 (367)
63 PRK09318 bifunctional 3,4-dihy 36.9 48 0.001 33.4 4.4 37 48-84 320-356 (387)
64 COG1433 Uncharacterized conser 36.4 76 0.0016 26.7 4.8 39 46-84 56-94 (121)
65 PRK08815 GTP cyclohydrolase; P 36.2 50 0.0011 33.1 4.4 37 48-84 305-341 (375)
66 PRK09314 bifunctional 3,4-dihy 35.4 50 0.0011 32.7 4.2 33 48-80 301-334 (339)
67 PRK09311 bifunctional 3,4-dihy 34.0 57 0.0012 33.0 4.5 36 48-83 339-374 (402)
68 PLN02831 Bifunctional GTP cycl 33.7 57 0.0012 33.6 4.4 37 48-84 373-409 (450)
69 PRK09319 bifunctional 3,4-dihy 33.1 59 0.0013 34.3 4.4 37 48-84 343-379 (555)
70 cd01543 PBP1_XylR Ligand-bindi 32.8 3.6E+02 0.0077 24.2 9.3 100 45-163 98-210 (265)
71 cd06548 GH18_chitinase The GH1 32.7 4.5E+02 0.0098 25.2 11.1 118 74-208 82-214 (322)
72 TIGR03632 bact_S11 30S ribosom 32.4 1.1E+02 0.0025 24.9 5.2 36 46-81 51-91 (108)
73 PF14488 DUF4434: Domain of un 31.0 3E+02 0.0065 24.1 8.1 20 67-86 69-88 (166)
74 PRK14338 (dimethylallyl)adenos 30.5 6E+02 0.013 25.9 12.2 135 42-206 184-345 (459)
75 cd04743 NPD_PKS 2-Nitropropane 29.3 4.6E+02 0.01 25.7 9.7 58 27-85 55-112 (320)
76 cd02873 GH18_IDGF The IDGF's ( 29.2 5.2E+02 0.011 26.0 10.5 59 130-208 167-225 (413)
77 PRK14339 (dimethylallyl)adenos 28.8 4.9E+02 0.011 26.2 10.2 58 130-206 263-320 (420)
78 KOG0078 GTP-binding protein SE 28.7 1.3E+02 0.0028 27.7 5.4 63 57-125 61-128 (207)
79 COG4213 XylF ABC-type xylose t 28.6 99 0.0021 30.4 4.8 76 66-160 175-251 (341)
80 PF13377 Peripla_BP_3: Peripla 27.8 2.4E+02 0.0053 23.0 6.8 92 49-161 2-105 (160)
81 PF14903 WG_beta_rep: WG conta 27.6 47 0.001 20.5 1.7 16 327-342 1-16 (35)
82 PF02579 Nitro_FeMo-Co: Dinitr 26.5 2.8E+02 0.0061 20.8 6.5 46 43-89 41-86 (94)
83 COG0807 RibA GTP cyclohydrolas 26.2 1.2E+02 0.0027 27.5 4.8 39 48-86 133-171 (193)
84 PRK13347 coproporphyrinogen II 26.2 1.5E+02 0.0032 30.2 6.0 95 45-151 152-282 (453)
85 TIGR03628 arch_S11P archaeal r 25.9 1.7E+02 0.0036 24.4 5.1 37 45-81 53-102 (114)
86 PF02811 PHP: PHP domain; Int 25.5 1.7E+02 0.0038 24.4 5.5 46 40-85 14-64 (175)
87 PRK13586 1-(5-phosphoribosyl)- 24.6 4.4E+02 0.0096 24.3 8.4 70 42-127 30-108 (232)
88 PRK07198 hypothetical protein; 24.3 66 0.0014 32.5 2.9 37 48-84 338-375 (418)
89 PF00411 Ribosomal_S11: Riboso 24.2 1.5E+02 0.0033 24.1 4.7 35 47-81 52-91 (110)
90 CHL00041 rps11 ribosomal prote 23.5 2E+02 0.0044 23.8 5.3 34 47-80 65-103 (116)
91 PRK14330 (dimethylallyl)adenos 23.0 7.8E+02 0.017 24.7 14.5 75 115-208 250-332 (434)
92 PF00977 His_biosynth: Histidi 22.6 2.3E+02 0.0049 26.0 6.0 72 42-129 29-110 (229)
93 cd06542 GH18_EndoS-like Endo-b 22.5 1.7E+02 0.0037 26.9 5.3 77 67-147 55-143 (255)
94 cd06547 GH85_ENGase Endo-beta- 22.2 98 0.0021 30.5 3.7 83 64-151 47-141 (339)
95 cd04723 HisA_HisF Phosphoribos 22.1 4E+02 0.0087 24.4 7.6 69 43-127 36-113 (233)
96 TIGR03822 AblA_like_2 lysine-2 22.1 5.3E+02 0.011 24.9 8.7 21 66-86 187-207 (321)
97 PRK12581 oxaloacetate decarbox 21.9 1.3E+02 0.0028 31.2 4.6 38 48-85 111-154 (468)
98 COG2159 Predicted metal-depend 21.6 4.9E+02 0.011 24.9 8.3 95 136-272 113-209 (293)
99 PRK15321 putative type III sec 21.6 2.2E+02 0.0048 23.2 4.8 46 243-301 39-84 (120)
100 COG2730 BglC Endoglucanase [Ca 21.6 5.6E+02 0.012 25.7 9.1 103 45-149 76-219 (407)
101 PRK09607 rps11p 30S ribosomal 21.5 2.2E+02 0.0048 24.3 5.1 37 45-81 60-109 (132)
102 cd01421 IMPCH Inosine monophos 21.3 69 0.0015 29.0 2.2 17 194-210 91-107 (187)
103 TIGR00612 ispG_gcpE 1-hydroxy- 21.3 7.7E+02 0.017 24.5 9.5 101 53-209 91-199 (346)
104 cd02071 MM_CoA_mut_B12_BD meth 20.9 1.7E+02 0.0038 23.8 4.4 39 44-82 39-87 (122)
105 TIGR01162 purE phosphoribosyla 20.5 1.5E+02 0.0033 26.0 4.1 47 39-85 9-62 (156)
106 TIGR03820 lys_2_3_AblA lysine- 20.4 4.6E+02 0.01 26.7 8.1 35 55-90 186-229 (417)
107 PRK05309 30S ribosomal protein 20.4 2.5E+02 0.0054 23.7 5.3 34 47-80 69-107 (128)
108 PRK13587 1-(5-phosphoribosyl)- 20.4 4.2E+02 0.0092 24.4 7.4 70 42-127 31-111 (234)
109 PRK09989 hypothetical protein; 20.2 6.7E+02 0.015 22.9 10.2 51 30-81 4-58 (258)
110 cd06549 GH18_trifunctional GH1 20.1 4.3E+02 0.0094 25.1 7.6 94 89-207 80-173 (298)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.1e-85 Score=632.57 Aligned_cols=309 Identities=53% Similarity=0.962 Sum_probs=255.8
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhccccc
Q 019260 30 IGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNF 109 (343)
Q Consensus 30 ~Gv~Yg~~~~~~ps~~~v~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 109 (343)
+|||||+.++|+|+++++++++|+++|++||||++|+++|+|++++||.|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecccccCCCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHH
Q 019260 110 ANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 189 (343)
Q Consensus 110 ~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~ 189 (343)
+|.++|+.|+||||++...... .|+|+|+++|++|.+.||+++|||+|+++++++..+||||+|.|++++.++|+|+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999754333 899999999999999999988999999999999999999999999998899999999
Q ss_pred HHhhcCCcceecccccccccCC-CCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEecccCC
Q 019260 190 FLNENRSPLLLNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWP 268 (343)
Q Consensus 190 fL~~~~d~~~vN~yPff~~~~~-~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWP 268 (343)
||.++++|+|+|+||||.+.++ ..++|+||+|++.+... |+++.|+|+||+|+|++++||+|+|+++++|+|||||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999988 88999999999876666 889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeeecCCCCeeeeccc
Q 019260 269 TAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 342 (343)
Q Consensus 269 S~G~~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf~~d~~~ky~~~~ 342 (343)
|+|+.+ ++++||+.|++++++++.+|||+||+.++++||||||||+||+++++|||||||++||+|||+|+|
T Consensus 239 s~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 239 SAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999977 999999999999999999999999988999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-48 Score=358.69 Aligned_cols=251 Identities=20% Similarity=0.335 Sum_probs=203.1
Q ss_pred CCceeeEEecCCCCC--CCCHHHHHHHHHh-CCCC-EEEEecCC----hHHHHHHhcCCCEEEEecCCCchhhhhhcHHH
Q 019260 26 SGAQIGVCYGMLGNN--LPSKRDVIALYNQ-NNIR-RMRLYDPN----REALEALRGSNIEVMLGLPNNDLRRIASNQAE 97 (343)
Q Consensus 26 ~~~~~Gv~Yg~~~~~--~ps~~~v~~ll~s-~~~~-~VRlY~~d----~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~ 97 (343)
..++.||||+++.++ |||.+++..+|.. ..++ .||+|++| .+|++|+...|+||.||||..+..+-+ .+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~--~~- 118 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA--VE- 118 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh--HH-
Confidence 456799999999875 8999999765543 2333 99999988 468899999999999999986533322 22
Q ss_pred HHHHHHhcccccCCCceEEEEEecccccCCCc-hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc
Q 019260 98 ANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN-FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF 176 (343)
Q Consensus 98 a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~-~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f 176 (343)
.-+..++.+++.++.|++|+||||.|+|++ ++++|+.+|..||++|+.+|++ .||+|+++|.+|.+.
T Consensus 119 --~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 119 --KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred --HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC--------
Confidence 123467888888999999999999999987 7899999999999999999997 599999999988752
Q ss_pred ccCccchhhhHHHHHhhcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCC
Q 019260 177 KQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGG 256 (343)
Q Consensus 177 ~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~ 256 (343)
|. ||+++||+|+|.||||+.+. ...+.+ .++..|+.-++++ +| .
T Consensus 187 ---------p~---l~~~SDfia~N~~aYwd~~~----------------~a~~~~----~f~~~q~e~vqsa---~g-~ 230 (305)
T COG5309 187 ---------PE---LCQASDFIAANAHAYWDGQT----------------VANAAG----TFLLEQLERVQSA---CG-T 230 (305)
T ss_pred ---------hH---Hhhhhhhhhcccchhccccc----------------hhhhhh----HHHHHHHHHHHHh---cC-C
Confidence 33 88999999999999999862 122333 4554557666654 34 4
Q ss_pred CccEEEecccCCCCCC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCC--CCCCeeeeecC
Q 019260 257 SLGIVISESGWPTAGG-DG-ALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGP--EIERHWGLFAP 332 (343)
Q Consensus 257 ~~~vvItETGWPS~G~-~~-~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~--~~E~~wGlf~~ 332 (343)
+|+++|+||||||.|. .| .+||++||+.|+++++|.++ . .+.++|+||+|||+||..+ ++|+|||++..
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~------~-~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~s 303 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR------S-CGYDVFVFEAFDDDWKADGSYGVEKYWGVLSS 303 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh------c-cCccEEEeeeccccccCccccchhhceeeecc
Confidence 5999999999999998 22 27999999999999999884 2 4899999999999999864 69999999998
Q ss_pred CC
Q 019260 333 TR 334 (343)
Q Consensus 333 d~ 334 (343)
++
T Consensus 304 ~~ 305 (305)
T COG5309 304 DR 305 (305)
T ss_pred CC
Confidence 75
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.10 E-value=1.1e-08 Score=99.59 Aligned_cols=245 Identities=16% Similarity=0.280 Sum_probs=125.5
Q ss_pred HHHHHHHHHhCCCCEEEEe---cC------C-hHHH---HHHhcCCCEEEEecCCCchhh----------hhh-cHHHH-
Q 019260 44 KRDVIALYNQNNIRRMRLY---DP------N-REAL---EALRGSNIEVMLGLPNNDLRR----------IAS-NQAEA- 98 (343)
Q Consensus 44 ~~~v~~ll~s~~~~~VRlY---~~------d-~~vl---~A~~~~gi~V~lGv~~~~~~~----------~a~-~~~~a- 98 (343)
..++.++||..|++.||+= ++ | ..++ +.+++.||+|+|-.-.+|-.+ ... +.+++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3678999999999887765 11 2 2344 456689999999988764221 111 11111
Q ss_pred ---HHHHHhccccc-CCCceEEEEEecccccCC-----C--chhHHHHHHHHHHHHHHHHcCCCCceEEeeeeecccccc
Q 019260 99 ---NTWVQNNVRNF-ANNVKFKYIAVGNEAKPG-----D--NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGE 167 (343)
Q Consensus 99 ---~~wv~~~v~~~-~~~~~I~~I~VGNE~l~~-----~--~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~ 167 (343)
.++.++-+... .-+..++.|.||||.-.. + ...+.+...++...+++|+.+- ++||-.-. ..
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~-----~~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHL-----AN 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEE-----S-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEE-----CC
Confidence 11211111111 014668899999996432 1 2456778888888888887543 35543321 11
Q ss_pred ccCCCCcccccCccchhhhHHHHHh---hcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhhHHHHHHH
Q 019260 168 SFPPSRGSFKQDYRPILDPLIRFLN---ENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILD 244 (343)
Q Consensus 168 ~~pPs~g~f~~~~~~~~~p~l~fL~---~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vd 244 (343)
|-.. ...+-..+.|. -.-|+++++.||||...- +.+...++
T Consensus 179 --~~~~--------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l--------------------------~~l~~~l~ 222 (332)
T PF07745_consen 179 --GGDN--------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL--------------------------EDLKNNLN 222 (332)
T ss_dssp --TTSH--------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H--------------------------HHHHHHHH
T ss_pred --CCch--------HHHHHHHHHHHhcCCCcceEEEecCCCCcchH--------------------------HHHHHHHH
Confidence 0000 01111222222 245999999999998630 22333344
Q ss_pred HHHHHHHHcCCCCccEEEecccCCCCCC-----C----------CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEE
Q 019260 245 AVYAALEKTGGGSLGIVISESGWPTAGG-----D----------GALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYI 309 (343)
Q Consensus 245 av~~a~~k~g~~~~~vvItETGWPS~G~-----~----------~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~ 309 (343)
.+. ++. +|+|+|.|||||..-. . +.-+|++.|+.|++++++.+. ..|. +.+..+||
T Consensus 223 ~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~-~~p~--~~g~GvfY 293 (332)
T PF07745_consen 223 DLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVK-NVPN--GGGLGVFY 293 (332)
T ss_dssp HHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHH-TS----TTEEEEEE
T ss_pred HHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHH-Hhcc--CCeEEEEe
Confidence 332 333 4799999999999822 0 113689999999999999885 2222 24778887
Q ss_pred EE-eecCCC-----CCCCCCCCeeeeecCCCCeeeecc
Q 019260 310 FA-MFDENG-----KTGPEIERHWGLFAPTRQPRYQIN 341 (343)
Q Consensus 310 F~-~FDe~w-----K~g~~~E~~wGlf~~d~~~ky~~~ 341 (343)
-| ..-..+ ..|...|.. +||+.+|++--.|+
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 76 222222 122235544 89999998765543
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.83 E-value=1.1e-07 Score=91.20 Aligned_cols=158 Identities=25% Similarity=0.326 Sum_probs=85.0
Q ss_pred eeeEEecCCCCC--------CCCHHHH---HHHHHhCCCCEEEEecCCh-----HHHHHHhcCCCEEEEecCCCchhhhh
Q 019260 29 QIGVCYGMLGNN--------LPSKRDV---IALYNQNNIRRMRLYDPNR-----EALEALRGSNIEVMLGLPNNDLRRIA 92 (343)
Q Consensus 29 ~~Gv~Yg~~~~~--------~ps~~~v---~~ll~s~~~~~VRlY~~d~-----~vl~A~~~~gi~V~lGv~~~~~~~~a 92 (343)
..||.|-|-++. |-.++.- +.+||+.|++.||+|+.|| .-+.+|++.||-|++.|.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 379999987652 2222221 4588999999999998873 578999999999999998752 1121
Q ss_pred h-cH------HHHHHHHHhcccccCCCceEEEEEecccccCCC---chhHHHHHHHHHHHHHHHHcCCCCceEEeeeeec
Q 019260 93 S-NQ------AEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIET 162 (343)
Q Consensus 93 ~-~~------~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~---~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~ 162 (343)
. ++ ....+ ...-|..+..=+++-+..+|||++... ..++.+-.+++++|+-+++.++. .|||+-+-.-
T Consensus 108 r~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 108 RSDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TTS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 1 11 11122 112233332336889999999999764 25778899999999999999885 4999865321
Q ss_pred cccccccCCCCcccccCccchhhhHHHHHh-----hcCCcceecccccc
Q 019260 163 GALGESFPPSRGSFKQDYRPILDPLIRFLN-----ENRSPLLLNLYPYF 206 (343)
Q Consensus 163 ~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~-----~~~d~~~vN~yPff 206 (343)
+ ...-.++.++|. +..||+++|.|-+=
T Consensus 186 -~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 186 -D----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE----
T ss_pred -C----------------hhHHHHHHHHhcCCCcccccceeeeccceec
Confidence 0 111234455554 36699999998753
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=4.9e-07 Score=85.66 Aligned_cols=245 Identities=19% Similarity=0.343 Sum_probs=135.2
Q ss_pred HHHHHHHHHhCCCCEEEEe------cCC-----------hH---HHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHH
Q 019260 44 KRDVIALYNQNNIRRMRLY------DPN-----------RE---ALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQ 103 (343)
Q Consensus 44 ~~~v~~ll~s~~~~~VRlY------~~d-----------~~---vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~ 103 (343)
+++..++||..|+..|||- ++| .. +-+.+++.||||++-.-.+|..+=.+-+..-.+|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 5677889999999888774 333 12 333456789999999877653321111111122321
Q ss_pred h-------ccccc--------C-CCceEEEEEecccccCC-----Cc--hhHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 019260 104 N-------NVRNF--------A-NNVKFKYIAVGNEAKPG-----DN--FAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 160 (343)
Q Consensus 104 ~-------~v~~~--------~-~~~~I~~I~VGNE~l~~-----~~--~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~ 160 (343)
- .|-.| . -...+..|-||||.-.. ++ .-+.+...++.--++++.. +.+|+|-.-
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEEE-
Confidence 1 11111 0 13456789999997531 22 2344555555555555553 235666543
Q ss_pred eccccccccCCCCcccccCccchhhhHHHHHhh---cCCcceecccccccccCCCCCCccccccccCcceeccCCcchhh
Q 019260 161 ETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS 237 (343)
Q Consensus 161 ~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~---~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n 237 (343)
+.+.-. .+.|+ -+.+.|.+ .-|.++.-.||||.+.-+ |
T Consensus 222 ----la~g~~--n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~-------------------------n 262 (403)
T COG3867 222 ----LAEGEN--NSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN-------------------------N 262 (403)
T ss_pred ----ecCCCC--Cchhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-------------------------H
Confidence 222211 22332 12222222 337899999999998511 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccEEEecccC--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 019260 238 LFDAILDAVYAALEKTGGGSLGIVISESGW--------------PTAGGD-GALTNVDNARTYNNNLIQHVKRGSPKRPG 302 (343)
Q Consensus 238 ~~da~vdav~~a~~k~g~~~~~vvItETGW--------------PS~G~~-~~vas~~na~~y~~~l~~~~~~gtp~rp~ 302 (343)
+ ...++.+ .. --+|.|+|.||+. |+.+.. +.-.++.-|.+|.+.+++.+. ..|..
T Consensus 263 L-~~nl~di----a~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~-- 332 (403)
T COG3867 263 L-TTNLNDI----AS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKS-- 332 (403)
T ss_pred H-HhHHHHH----HH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCC--
Confidence 1 1112221 11 1356999999999 666642 224778899999999999986 22222
Q ss_pred CCccEEEEE------------------ee-cCCCCCCCCCCCeeeeecCCCCeeeecc
Q 019260 303 RPIETYIFA------------------MF-DENGKTGPEIERHWGLFAPTRQPRYQIN 341 (343)
Q Consensus 303 ~~~~~f~F~------------------~F-De~wK~g~~~E~~wGlf~~d~~~ky~~~ 341 (343)
++..+|+.| .| .|+|+.|..++.. -||+-+|.|--+|+
T Consensus 333 ~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 333 NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 245555554 12 2556554333333 68888887765543
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.42 E-value=0.00012 Score=76.95 Aligned_cols=255 Identities=14% Similarity=0.094 Sum_probs=139.7
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHhcCCCEEEEecCCC--------------
Q 019260 29 QIGVCYGMLGN---NLPSKRDV---IALYNQNNIRRMRLYD--PNREALEALRGSNIEVMLGLPNN-------------- 86 (343)
Q Consensus 29 ~~Gv~Yg~~~~---~~ps~~~v---~~ll~s~~~~~VRlY~--~d~~vl~A~~~~gi~V~lGv~~~-------------- 86 (343)
..|+|+-.... ..++.+.+ ++++|..|++.||+-. .++..+.+|-..||-|+.=++.-
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 46888753221 12455544 4578999999999943 35789999999999888544210
Q ss_pred -chhhhh------hcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHHHHHHHHHHHHcCCCCceEEeee
Q 019260 87 -DLRRIA------SNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTA 159 (343)
Q Consensus 87 -~~~~~a------~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~ 159 (343)
+..... ...+....-+++-|..+..--.|..=++|||.-...+.. ...++.+.+.+++.. ++=+|+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~~~~---~~~~~~l~~~~k~~D--ptR~vt~~ 448 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASREQGA---REYFAPLAELTRKLD--PTRPVTCV 448 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccchhH---HHHHHHHHHHHHhhC--CCCceEEE
Confidence 000000 001111122344455543334577899999974322222 233344444444433 33366665
Q ss_pred eeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhhHH
Q 019260 160 IETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLF 239 (343)
Q Consensus 160 ~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~ 239 (343)
.... . +|. .+ .+.+..|+++.|.|+=|-.... +. . .....+
T Consensus 449 ~~~~---~--~~~----~~-----------~~~~~~Dv~~~N~Y~~wy~~~~-~~--------------~----~~~~~~ 489 (604)
T PRK10150 449 NVMF---A--TPD----TD-----------TVSDLVDVLCLNRYYGWYVDSG-DL--------------E----TAEKVL 489 (604)
T ss_pred eccc---C--Ccc----cc-----------cccCcccEEEEcccceecCCCC-CH--------------H----HHHHHH
Confidence 4211 0 010 00 0223459999999863321100 00 0 001222
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEecccCCCCCC-----CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeec
Q 019260 240 DAILDAVYAALEKTGGGSLGIVISESGWPTAGG-----DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFD 314 (343)
Q Consensus 240 da~vdav~~a~~k~g~~~~~vvItETGWPS~G~-----~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FD 314 (343)
+..++.. .+ .+ ++|++++|.|+.+.-+ +. .-|.+.|..|++...+.+. .+|. -...|+..+||
T Consensus 490 ~~~~~~~----~~-~~-~kP~~isEyg~~~~~~~h~~~~~-~~~ee~q~~~~~~~~~~~~----~~p~-~~G~~iW~~~D 557 (604)
T PRK10150 490 EKELLAW----QE-KL-HKPIIITEYGADTLAGLHSMYDD-MWSEEYQCAFLDMYHRVFD----RVPA-VVGEQVWNFAD 557 (604)
T ss_pred HHHHHHH----HH-hc-CCCEEEEccCCccccccccCCCC-CCCHHHHHHHHHHHHHHHh----cCCc-eEEEEEEeeec
Confidence 2222221 11 12 7899999999876322 12 2578888888887777664 2453 56789999999
Q ss_pred CCCCCCC--CCCCeeeeecCCCCeeee
Q 019260 315 ENGKTGP--EIERHWGLFAPTRQPRYQ 339 (343)
Q Consensus 315 e~wK~g~--~~E~~wGlf~~d~~~ky~ 339 (343)
-....+. --..+.||++.||+||-.
T Consensus 558 ~~~~~g~~~~~g~~~Gl~~~dr~~k~~ 584 (604)
T PRK10150 558 FATSQGILRVGGNKKGIFTRDRQPKSA 584 (604)
T ss_pred cCCCCCCcccCCCcceeEcCCCCChHH
Confidence 6554331 123478999999999964
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.11 E-value=0.00017 Score=67.18 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=114.3
Q ss_pred ceeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHHhcCCCEEEEecCCCc
Q 019260 28 AQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDP-------------N-------REALEALRGSNIEVMLGLPNND 87 (343)
Q Consensus 28 ~~~Gv~Yg~~~~~~ps~~~v~~ll~s~~~~~VRlY~~-------------d-------~~vl~A~~~~gi~V~lGv~~~~ 87 (343)
...|+|-. +.+.. ..++..+.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566665 22112 6778889999999999999721 1 2578889999999999887631
Q ss_pred h----hhhhhcHHHHHHHHHh---ccc-ccCCCceEEEEEecccccCCCc-------hhHHHHHHHHHHHHHHHHcCCCC
Q 019260 88 L----RRIASNQAEANTWVQN---NVR-NFANNVKFKYIAVGNEAKPGDN-------FAQYLVPAMRNIQNAINAAGLGN 152 (343)
Q Consensus 88 ~----~~~a~~~~~a~~wv~~---~v~-~~~~~~~I~~I~VGNE~l~~~~-------~~~~Lv~~m~~vr~~L~~~gl~~ 152 (343)
. ...........+|+++ .+. .|.....|.++-+.||+..... ....+.+.++.+-.++++.+-+.
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 0 0001111112222221 232 2323445779999999987532 24778899999999999998754
Q ss_pred ceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccccccCCCCCCccccccccCcceeccCC
Q 019260 153 QIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGS 232 (343)
Q Consensus 153 ~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~ 232 (343)
.|-|+... |.... .. .....|. .....+.+.+|.|+.+....... . ..
T Consensus 167 ~i~~~~~~----~~~~~-------~~--~~~~~P~---~~~~~~~~~~H~Y~~~~~~~~~~-------------~---~~ 214 (281)
T PF00150_consen 167 LIIVGGGG----WGADP-------DG--AAADNPN---DADNNDVYSFHFYDPYDFSDQWN-------------P---GN 214 (281)
T ss_dssp EEEEEEHH----HHTBH-------HH--HHHHSTT---TTTTSEEEEEEEETTTCHHTTTS-------------T---CS
T ss_pred eeecCCCc----ccccc-------ch--hhhcCcc---cccCceeEEeeEeCCCCcCCccc-------------c---cc
Confidence 23333221 21100 00 0000110 13456778888888665432100 0 00
Q ss_pred cchhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCC
Q 019260 233 LSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG 272 (343)
Q Consensus 233 ~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~ 272 (343)
....+.....++.....+.+ .++||+|+|.|+++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~---~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 215 WGDASALESSFRAALNWAKK---NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTSEEEEEEEESSTTTS
T ss_pred chhhhHHHHHHHHHHHHHHH---cCCeEEEeCcCCcCCCC
Confidence 00112333344444444444 34699999999995543
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.87 E-value=0.002 Score=60.44 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=110.4
Q ss_pred HHHHHHhcCCCEEEE--ecCCCchhhhhh------cHHHHHHHHHhcccccCCCceEEEEEecccccCCCc------hhH
Q 019260 67 EALEALRGSNIEVML--GLPNNDLRRIAS------NQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN------FAQ 132 (343)
Q Consensus 67 ~vl~A~~~~gi~V~l--Gv~~~~~~~~a~------~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~------~~~ 132 (343)
.+++.+++.||+|-- -+|....+.... ......+++.+.+..| ...|..+-|.||++..+. ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 356666777777522 245443333222 1344566677666666 356899999999986431 111
Q ss_pred HHH--HHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhc---CCcceeccccccc
Q 019260 133 YLV--PAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNEN---RSPLLLNLYPYFA 207 (343)
Q Consensus 133 ~Lv--~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~---~d~~~vN~yPff~ 207 (343)
..+ .+|...-++.+++. +++++-.-+ .++.. ++. - ...+..+++.|.+. .|-+++..|-+.+
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~~---~~~---k----~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTEE---PNA---K----RQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCcC---ccH---H----HHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 111 33444444444433 235554432 11111 100 0 11233445445443 3444443332110
Q ss_pred ccCCCCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCCCCCCCCHHHHHHHHH
Q 019260 208 IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNN 287 (343)
Q Consensus 208 ~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~~~~vas~~na~~y~~ 287 (343)
. . + ++.+...|++++-.++||+|||.+-|.. ++.+.|+.|++
T Consensus 165 ~----------------------~-----~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~------~~~~~qA~~~~ 206 (254)
T smart00633 165 S----------------------P-----N-----IAEIRAALDRFASLGLEIQITELDISGY------PNPQAQAADYE 206 (254)
T ss_pred C----------------------C-----C-----HHHHHHHHHHHHHcCCceEEEEeecCCC------CcHHHHHHHHH
Confidence 0 0 1 1222233333333478999999999864 34478889999
Q ss_pred HHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeeeecCCCCeeeec
Q 019260 288 NLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGLFAPTRQPRYQI 340 (343)
Q Consensus 288 ~l~~~~~~gtp~rp~~~~~~f~F~~FDe-~wK~g~~~E~~wGlf~~d~~~ky~~ 340 (343)
.++..+.+ . |. ...+++..+.|. .|..+ .+-|||+.|++||-.+
T Consensus 207 ~~l~~~~~-~---p~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 207 EVFKACLA-H---PA-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHc-C---CC-eeEEEEeCCccCCcccCC----CCceeECCCCCCChhh
Confidence 99888852 2 21 233445555553 45442 4679999999998543
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.53 E-value=0.0036 Score=58.44 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=96.0
Q ss_pred ceEEEEEecccccCCCc---hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHH
Q 019260 113 VKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 189 (343)
Q Consensus 113 ~~I~~I~VGNE~l~~~~---~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~ 189 (343)
..++.|..=||+=...+ ++++.+....+..+.|+.. .+++..+.....-. . +|+ -.+.+...++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~~~~-~-~~~-------g~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GVKLGSPAVAFTNG-G-TPG-------GLDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----CcEEECCeecccCC-C-CCC-------ccHHHHHHHH
Confidence 46788888899865432 5667777777766666642 37877764211000 0 011 0123444444
Q ss_pred HHh--hcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEecccC
Q 019260 190 FLN--ENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGW 267 (343)
Q Consensus 190 fL~--~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGW 267 (343)
-+. ...|++.+|.| ... + .-|...++.++ ++.| +||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~----~----------------------~~~~~~i~~~~---~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGD----A----------------------DDFKDYIDDLH---NRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC---CcC----H----------------------HHHHHHHHHHH---HHhC---CCEEEEeecc
Confidence 322 26788887777 110 0 12233344443 3433 7999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeeecCCCCe
Q 019260 268 PTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQP 336 (343)
Q Consensus 268 PS~G~~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf~~d~~~ 336 (343)
.. +... .+.+.++.|.+..+..+. .++. --.++||...++ +. .....-.|++.+|++
T Consensus 176 ~~-~~~~--~~~~~~~~fl~~~~~~ld----~~~~-VeryawF~~~~~-~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WN-GGSQ--GSDEQQASFLRQALPWLD----SQPY-VERYAWFGFMND-GS---GVNPNSALLDADGSL 232 (239)
T ss_pred cC-CCCC--CCHHHHHHHHHHHHHHHh----cCCC-eeEEEecccccc-cC---CCccccccccCCCCc
Confidence 87 2233 788999999999999986 1232 345788883332 22 245566778878754
No 10
>TIGR03356 BGL beta-galactosidase.
Probab=96.99 E-value=0.17 Score=51.39 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCCEEEEec------------CC-------hHHHHHHhcCCCEEEEecCCCchh
Q 019260 46 DVIALYNQNNIRRMRLYD------------PN-------REALEALRGSNIEVMLGLPNNDLR 89 (343)
Q Consensus 46 ~v~~ll~s~~~~~VRlY~------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~ 89 (343)
+-+++|++.|++++|+== .+ .++|.++.+.||++++.+..-+++
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 446788999999988631 12 358899999999999999654443
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.95 E-value=0.049 Score=52.09 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=53.4
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHhcCCCEEEEecCCCc--hhh-h------
Q 019260 29 QIGVCYGMLGNN---LPSKRDV---IALYNQNNIRRMRLYD--PNREALEALRGSNIEVMLGLPNND--LRR-I------ 91 (343)
Q Consensus 29 ~~Gv~Yg~~~~~---~ps~~~v---~~ll~s~~~~~VRlY~--~d~~vl~A~~~~gi~V~lGv~~~~--~~~-~------ 91 (343)
..|||+...... .++.+.+ ++++|+.|++.||+.. .++..+.++-..||-|+.-++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998875432 3555555 3478899999999964 347899999999999998765510 000 0
Q ss_pred hh---cHHHHHHHHHhcccccCCCceEEEEEecccc
Q 019260 92 AS---NQAEANTWVQNNVRNFANNVKFKYIAVGNEA 124 (343)
Q Consensus 92 a~---~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~ 124 (343)
.. ..+.+..-+++.|..+..--.|..=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 00 1122222344455544332347788899998
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=96.66 E-value=0.21 Score=49.45 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCCEEEEec--C-----C---------hHHHHHHhcCCCEEEEecCCCchhhhh----------------
Q 019260 45 RDVIALYNQNNIRRMRLYD--P-----N---------REALEALRGSNIEVMLGLPNNDLRRIA---------------- 92 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY~--~-----d---------~~vl~A~~~~gi~V~lGv~~~~~~~~a---------------- 92 (343)
++.+++++..|++.|||-. - . ..+|..+++.||+|+|+++....+..-
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 3456788889999999732 1 1 358888899999999999743211100
Q ss_pred ----------h-c---HHHHHHHHHhcccccCCCceEEEEEecccc
Q 019260 93 ----------S-N---QAEANTWVQNNVRNFANNVKFKYIAVGNEA 124 (343)
Q Consensus 93 ----------~-~---~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~ 124 (343)
- + .+.+.+.+.+-+..|...-.|.++.|+||.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~ 138 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEP 138 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCST
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecccc
Confidence 0 0 223444444444555444579999999995
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=94.95 E-value=0.015 Score=59.33 Aligned_cols=279 Identities=20% Similarity=0.261 Sum_probs=130.9
Q ss_pred HHHHHHHHhCCCCEEEEe--------cC-----C-------hHHHHHHhcCCCEEEEecCCCchhhhhh------cHHHH
Q 019260 45 RDVIALYNQNNIRRMRLY--------DP-----N-------REALEALRGSNIEVMLGLPNNDLRRIAS------NQAEA 98 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY--------~~-----d-------~~vl~A~~~~gi~V~lGv~~~~~~~~a~------~~~~a 98 (343)
+|-+++|++.|++..|+= +. | .++|..+...||+.+|.+..-+++..-. +...
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~- 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET- 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH-
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH-
Confidence 345788999999998875 11 1 3688999999999999999766554211 1111
Q ss_pred HHHHHhc----ccccCCCceEEEEEecccccCC-------C------ch-------hHHHHHHHHHHHHHHHHcCCCCce
Q 019260 99 NTWVQNN----VRNFANNVKFKYIAVGNEAKPG-------D------NF-------AQYLVPAMRNIQNAINAAGLGNQI 154 (343)
Q Consensus 99 ~~wv~~~----v~~~~~~~~I~~I~VGNE~l~~-------~------~~-------~~~Lv~~m~~vr~~L~~~gl~~~I 154 (343)
..++.+. +..+ .+.|+.-+.=||+..- + .. ...++-+-..+.+++++..- +.
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 1111111 2233 4567777778886531 1 01 12244444444555666553 35
Q ss_pred EEeeeeecccccc--ccCCCC--c---------------ccccCccchhh--------------hHHHHHhhcCCcceec
Q 019260 155 KVSTAIETGALGE--SFPPSR--G---------------SFKQDYRPILD--------------PLIRFLNENRSPLLLN 201 (343)
Q Consensus 155 ~VsT~~~~~~~~~--~~pPs~--g---------------~f~~~~~~~~~--------------p~l~fL~~~~d~~~vN 201 (343)
+|+.++......- ..|+.. + .+..++...|. ..+..|....||+++|
T Consensus 216 ~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiN 295 (455)
T PF00232_consen 216 KIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGIN 295 (455)
T ss_dssp EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEE
T ss_pred EEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhc
Confidence 7777665432210 000110 0 01111111121 2234456789999999
Q ss_pred ccccccccCC--CCCCcccc---cccc---CcceeccCCcc-hhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCC
Q 019260 202 LYPYFAIAGN--RQISLDYA---LFRS---QQTVVSDGSLS-YRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG 272 (343)
Q Consensus 202 ~yPff~~~~~--~~i~~~~a---lf~~---~~~~~~d~~~~-y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~ 272 (343)
-|.=---... ......+. .+.. +.....+.++. |-.-+..++.-++ + -++++||+|||.|++....
T Consensus 296 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~--~Y~~~pI~ITENG~~~~~~ 370 (455)
T PF00232_consen 296 YYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---D--RYGNPPIYITENGIGDPDE 370 (455)
T ss_dssp ESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---H--HHTSSEEEEEEE---EETT
T ss_pred cccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---c--ccCCCcEEEeccccccccc
Confidence 9863322211 11111111 1100 00011222221 2222222232221 2 2467899999999998765
Q ss_pred C--CCC---CCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeeecCC------CCeeee
Q 019260 273 D--GAL---TNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPT------RQPRYQ 339 (343)
Q Consensus 273 ~--~~v---as~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf~~d------~~~ky~ 339 (343)
. +.+ .-+.--+.+++.+.+.++.|.+.+ .+|..++.| ++--..+..+.|||++-| |+||-+
T Consensus 371 ~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~-----GY~~WSl~D-n~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 371 VDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVR-----GYFAWSLLD-NFEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp CTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEE-----EEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccccCcCcHHHHHHHHHHHHHHHhhhccCCCee-----eEeeecccc-ccccccCccCccCceEEcCCCCcCeeeccH
Confidence 2 100 112223455555555554564432 467777777 333333589999999999 777754
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.62 E-value=1.8 Score=48.80 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=57.8
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEecC--ChHHHHHHhcCCCEEEEecCCCc--------hhhhh
Q 019260 29 QIGVCYGMLGN---NLPSKRDV---IALYNQNNIRRMRLYDP--NREALEALRGSNIEVMLGLPNND--------LRRIA 92 (343)
Q Consensus 29 ~~Gv~Yg~~~~---~~ps~~~v---~~ll~s~~~~~VRlY~~--d~~vl~A~~~~gi~V~lGv~~~~--------~~~~a 92 (343)
..|+|+-.... ...+++++ ++++|+.|++.||+-.. ++..+.+|-..||-|+--+.... ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 57898764322 23456655 45789999999998642 46789999999998887542110 00011
Q ss_pred hcH---HHHHHHHHhcccccCCCceEEEEEecccccC
Q 019260 93 SNQ---AEANTWVQNNVRNFANNVKFKYIAVGNEAKP 126 (343)
Q Consensus 93 ~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 126 (343)
.++ ++..+-+++.|.....--.|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 111 1112224445555433345778889999754
No 15
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.80 E-value=4 Score=40.41 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=76.9
Q ss_pred CCCEEEEecC-ChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCC--Cchh
Q 019260 55 NIRRMRLYDP-NREALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG--DNFA 131 (343)
Q Consensus 55 ~~~~VRlY~~-d~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~--~~~~ 131 (343)
.++.|-+|+. +++++..+...|++|++..-.. ...+ ++++....+++. +..+.....+.+|-+==|-... .+..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCCCcchH
Confidence 3688888864 6789999999999999875322 2222 233333334332 2222222245566665554432 1235
Q ss_pred HHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 132 QYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 132 ~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
..++.-|+++|++|++.+.. ..+|.+..+. |+....+ . --+..|++.+|++.+-.|=|..
T Consensus 132 ~~~t~llkelr~~l~~~~~~--~~Lsvav~~~-------p~~~~~~----~---yd~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 132 YALTELVKETTKAFKKENPG--YQISFDVAWS-------PSCIDKR----C---YDYTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC--cEEEEEEecC-------ccccccc----c---cCHHHHHhhCCEeeEEeecccC
Confidence 67889999999999987543 2344433211 2111100 0 0123477888999999988754
No 16
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=87.86 E-value=45 Score=37.86 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHhcCCCEEEEecCCCc-----hhhhhhcH
Q 019260 29 QIGVCYGMLGN---NLPSKRDV---IALYNQNNIRRMRLYD--PNREALEALRGSNIEVMLGLPNND-----LRRIASNQ 95 (343)
Q Consensus 29 ~~Gv~Yg~~~~---~~ps~~~v---~~ll~s~~~~~VRlY~--~d~~vl~A~~~~gi~V~lGv~~~~-----~~~~a~~~ 95 (343)
..|+|+-.... ...+++++ ++++|..|++.||+-. .++..+..|-..||-|+--.+... ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 57898764322 23566665 4577899999999953 357899998899998886654310 00111111
Q ss_pred ---HHHHHHHHhcccccCCCceEEEEEeccccc
Q 019260 96 ---AEANTWVQNNVRNFANNVKFKYIAVGNEAK 125 (343)
Q Consensus 96 ---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 125 (343)
++..+-+++.|.....--.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 111222334455443334577899999974
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=86.95 E-value=6.5 Score=37.74 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=68.5
Q ss_pred hHHHHHHhcCCCEEEEecCCCc--------hhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHH
Q 019260 66 REALEALRGSNIEVMLGLPNND--------LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPA 137 (343)
Q Consensus 66 ~~vl~A~~~~gi~V~lGv~~~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~ 137 (343)
+.++.++++.|+||++.|.+.. ...+.++++.....+ +++..+.....+.+|.+-=|.+. .+....++..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVP-PEDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHH
Confidence 6788888888999999887532 233444443222222 23332222224556666556543 2345668899
Q ss_pred HHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccc-cCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 138 MRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFK-QDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 138 m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~-~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
|+.+|.+|.+.|+ .++++.. |...... ..+.. .--+..|++.+|++.+-.|=|..
T Consensus 126 l~~lr~~l~~~~~----~lsv~~~---------p~~~~~~~~~~~~--~~~~~~l~~~vD~v~lm~YD~~~ 181 (313)
T cd02874 126 LRELSDRLHPAGY----TLSTAVV---------PKTSADQFGNWSG--AYDYAAIGKIVDFVVLMTYDWHW 181 (313)
T ss_pred HHHHHHHhhhcCc----EEEEEec---------Ccccccccccccc--ccCHHHHHhhCCEEEEEEeccCC
Confidence 9999999987764 3333211 1100000 00000 00123477888999988887654
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=86.01 E-value=2.8 Score=41.03 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred HHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccc---c--CCCceEEEEEecccccCCC---c-hhHHHHHHH
Q 019260 68 ALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRN---F--ANNVKFKYIAVGNEAKPGD---N-FAQYLVPAM 138 (343)
Q Consensus 68 vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~---~--~~~~~I~~I~VGNE~l~~~---~-~~~~Lv~~m 138 (343)
+.+-+.++|++|+.|+..-.-.........-..|=.+|.+. | -..-.|.+-=.|||.--.+ . .+.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 44445689999999987421111011113335576666443 3 1234577788999965332 1 567888888
Q ss_pred HHHHHHHHHc---CCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhh-cCCcceecccccccccCCCCC
Q 019260 139 RNIQNAINAA---GLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE-NRSPLLLNLYPYFAIAGNRQI 214 (343)
Q Consensus 139 ~~vr~~L~~~---gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~-~~d~~~vN~yPff~~~~~~~i 214 (343)
..+|+.|+.. .+.+ -.|.-|... |. ...+++.|+-..+ ..|.+.-|.|+. ....++.
T Consensus 194 ~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d---~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPG-PLVVGPGGF-------------FD---ADWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEES-------------S----GGGHHHHHHHTTTT--SEEEEEEEEE---TT-TT-
T ss_pred HHHHHHHHHHHhcCCCC-CeEECCCCC-------------CC---HHHHHHHHHhcCCCccCEEEEEecCC-CCCchHH-
Confidence 8888887763 1111 235544421 11 1234555554444 378888888863 2221110
Q ss_pred CccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCC
Q 019260 215 SLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG 272 (343)
Q Consensus 215 ~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~ 272 (343)
+-..+ .++ .|-+.+..++..+...+++.+ ++++++++|||=...|+
T Consensus 255 -l~~~~--------l~p--~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 255 -LIEDF--------LNP--SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp --HHHH--------TS----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred -HHHHh--------cCh--hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 00011 111 122333333444444444444 77899999999777666
No 19
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=84.94 E-value=2.6 Score=43.27 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=97.7
Q ss_pred HHHhcccccCCCceEEEEEecccccCCC-chhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccC
Q 019260 101 WVQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQD 179 (343)
Q Consensus 101 wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~ 179 (343)
.+..-|.+|.-...|.+-..-||.|.+. .....++.....+.+-++..+=++-|.|+ |...-|.. |.|-.+
T Consensus 125 yvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~-~~pyN~----- 196 (587)
T COG3934 125 YVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQ-YAPYNA----- 196 (587)
T ss_pred HHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccc-cCCccc-----
Confidence 3444555664455677778889987743 36777888888888888876654434444 43222322 112111
Q ss_pred ccchhhhHHHHHhhcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhh-HHHHHHHHHHHHHHHcCCCCc
Q 019260 180 YRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS-LFDAILDAVYAALEKTGGGSL 258 (343)
Q Consensus 180 ~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n-~~da~vdav~~a~~k~g~~~~ 258 (343)
-.++||-.-|+||+|+..- ++.. +.+|-. .+ |-- ..+| -+
T Consensus 197 ------------r~~vDya~~hLY~hyd~sl-------~~r~----------s~~yg~~~l----~i~----~~~g--~~ 237 (587)
T COG3934 197 ------------RFYVDYAANHLYRHYDTSL-------VSRV----------STVYGKPYL----DIP----TIMG--WQ 237 (587)
T ss_pred ------------ceeeccccchhhhhccCCh-------hhee----------eeeecchhh----ccc----hhcc--cc
Confidence 1256899999999877531 1110 111111 11 100 1222 36
Q ss_pred cEEEecccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCC-CCC------CCCCCeeeeec
Q 019260 259 GIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENG-KTG------PEIERHWGLFA 331 (343)
Q Consensus 259 ~vvItETGWPS~G~~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~w-K~g------~~~E~~wGlf~ 331 (343)
||+.-|-|-|++-+ .+|.+.|+--....+.. +.+-=+|-.|++-- -+. ..-|-.|||.+
T Consensus 238 pV~leefGfsta~g------~e~s~ayfiw~~lal~~--------ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIr 303 (587)
T COG3934 238 PVNLEEFGFSTAFG------QENSPAYFIWIRLALDT--------GGDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIR 303 (587)
T ss_pred eeeccccCCccccc------ccccchhhhhhhhHHhh--------cCCceEEEEecCCccCCCCCCCccccccceeeeec
Confidence 99999999997633 23334443333222221 11222455555332 111 23788899999
Q ss_pred CCCCeeeec
Q 019260 332 PTRQPRYQI 340 (343)
Q Consensus 332 ~d~~~ky~~ 340 (343)
.|+.+|++.
T Consensus 304 adgpek~~a 312 (587)
T COG3934 304 ADGPEKIDA 312 (587)
T ss_pred CCCchhhhH
Confidence 999999863
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=83.17 E-value=1.9 Score=44.36 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=42.2
Q ss_pred ccEEEecccCCCCCC---CCCC---CCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeeee
Q 019260 258 LGIVISESGWPTAGG---DGAL---TNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGLF 330 (343)
Q Consensus 258 ~~vvItETGWPS~G~---~~~v---as~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe-~wK~g~~~E~~wGlf 330 (343)
.||+|||.|+..... .+.+ -=+.--+.|++.+.+.++.|.+.+ .+|.-++.|- .|.. +.++.|||+
T Consensus 369 ~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~-----GY~~WSl~DnfEW~~--Gy~~RfGl~ 441 (469)
T PRK13511 369 KKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVK-----GYFIWSLMDVFSWSN--GYEKRYGLF 441 (469)
T ss_pred CCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeecccccccchhc--CccCccceE
Confidence 489999999975432 1100 112234444555544444576544 3777777773 3443 489999999
Q ss_pred cCCC
Q 019260 331 APTR 334 (343)
Q Consensus 331 ~~d~ 334 (343)
+-|.
T Consensus 442 ~VD~ 445 (469)
T PRK13511 442 YVDF 445 (469)
T ss_pred EECC
Confidence 8874
No 21
>PLN02998 beta-glucosidase
Probab=79.26 E-value=2.6 Score=43.75 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=44.3
Q ss_pred CCCccEEEecccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeeecC
Q 019260 255 GGSLGIVISESGWPTAGG--DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAP 332 (343)
Q Consensus 255 ~~~~~vvItETGWPS~G~--~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf~~ 332 (343)
+++.||+|||-|+....+ ....-=++--+.+++.+.+.+..|.+.+ .+|.-++.| ++.-..+.++.|||++-
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~-----GY~~WSl~D-nfEW~~Gy~~RfGLv~V 463 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVK-----GYFQWSLMD-VFELFGGYERSFGLLYV 463 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchh-hhchhccccCccceEEE
Confidence 334489999999987531 1100123344555555555555565543 366667776 33322348999999988
Q ss_pred CCC
Q 019260 333 TRQ 335 (343)
Q Consensus 333 d~~ 335 (343)
|..
T Consensus 464 D~~ 466 (497)
T PLN02998 464 DFK 466 (497)
T ss_pred CCC
Confidence 753
No 22
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=79.16 E-value=81 Score=32.44 Aligned_cols=245 Identities=15% Similarity=0.218 Sum_probs=110.6
Q ss_pred HHHhCCCCEEEEecC---C--------------------hHHHHHHhcCCCEEEEecCCCchhhhh--------------
Q 019260 50 LYNQNNIRRMRLYDP---N--------------------REALEALRGSNIEVMLGLPNNDLRRIA-------------- 92 (343)
Q Consensus 50 ll~s~~~~~VRlY~~---d--------------------~~vl~A~~~~gi~V~lGv~~~~~~~~a-------------- 92 (343)
+.+..||++||+... | ..++..+.+.||+-++-+-... ..++
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p-~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP-MALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-S
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech-hhhcCCCCccccccCCcC
Confidence 334578999998731 1 2578888899998876554210 0111
Q ss_pred --hcH----HHHHHHHHhcccccCCCceEE--EEEecccccCCC----chhHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 019260 93 --SNQ----AEANTWVQNNVRNFANNVKFK--YIAVGNEAKPGD----NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 160 (343)
Q Consensus 93 --~~~----~~a~~wv~~~v~~~~~~~~I~--~I~VGNE~l~~~----~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~ 160 (343)
.+. +.+.++++.-+.+|. ...|+ ..=|=||+=... ....+-...-+....+||+.. +.++|+-+-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~ 203 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPA 203 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcc
Confidence 111 122333333333331 11111 344688864321 234556777788888888864 358998771
Q ss_pred eccccccccCCCCcccccCccchhhhHHHHHhh---cCCcceecccccccccCCCCCCccccccccCcceeccCCcchhh
Q 019260 161 ETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS 237 (343)
Q Consensus 161 ~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~---~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n 237 (343)
.. +. . ...+...++|+.+ .-||++.|.||+=..... .-.. ..... ....
T Consensus 204 ~~--~~--~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~---~~~~------~~~~~----~~~~ 255 (486)
T PF01229_consen 204 FA--WA--Y-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDI---NENM------YERIE----DSRR 255 (486)
T ss_dssp EE--TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE----SS-E------EEEB------HHH
T ss_pred cc--cc--H-----------HHHHHHHHHHHhcCCCCCCEEEEEeccccccccc---chhH------Hhhhh----hHHH
Confidence 10 10 0 1234555565543 459999999996332110 0000 00000 0112
Q ss_pred HHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCCCCC--CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEE----
Q 019260 238 LFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDGA--LTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFA---- 311 (343)
Q Consensus 238 ~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~~~~--vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~---- 311 (343)
+++. +..+...+...+.+++++.+|| |.+.-.+.. --|.-+|.-..+++++... ..++.|-+-
T Consensus 256 ~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~sywt~sD 324 (486)
T PF01229_consen 256 LFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYWTFSD 324 (486)
T ss_dssp HHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES-SBS
T ss_pred HHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhccchhh
Confidence 2222 2222233455677899999999 887654210 1344555555555666542 123333322
Q ss_pred eecCCCCCCCCCCCeeeeecCCCCee
Q 019260 312 MFDENGKTGPEIERHWGLFAPTRQPR 337 (343)
Q Consensus 312 ~FDe~wK~g~~~E~~wGlf~~d~~~k 337 (343)
.|.|.--+....-.-|||+..+|-+|
T Consensus 325 ~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 325 RFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp ---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hhhccCCCCCceecchhhhhccCCCc
Confidence 23333222223556699999998666
No 23
>PLN02814 beta-glucosidase
Probab=79.05 E-value=2.7 Score=43.67 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCCccEEEecccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeeeec
Q 019260 255 GGSLGIVISESGWPTAGG--DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGLFA 331 (343)
Q Consensus 255 ~~~~~vvItETGWPS~G~--~~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe-~wK~g~~~E~~wGlf~ 331 (343)
+++.||+|||-|++...+ ....-=++--+.+++.+.+.+..|.|.+ .+|.-++.|- .|.. +.++.|||++
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~-----GY~~WSllDnfEW~~--Gy~~RfGLvy 457 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTR-----GYFVWSMIDLYELLG--GYTTSFGMYY 457 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhchhc--cccCccceEE
Confidence 345589999999975432 1100112334445555555554576554 3777777772 3433 4899999998
Q ss_pred CCCC
Q 019260 332 PTRQ 335 (343)
Q Consensus 332 ~d~~ 335 (343)
-|..
T Consensus 458 VD~~ 461 (504)
T PLN02814 458 VNFS 461 (504)
T ss_pred ECCC
Confidence 8654
No 24
>PLN02849 beta-glucosidase
Probab=76.66 E-value=3.5 Score=42.85 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCCccEEEecccCCCCCC-CCC---CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeee
Q 019260 255 GGSLGIVISESGWPTAGG-DGA---LTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLF 330 (343)
Q Consensus 255 ~~~~~vvItETGWPS~G~-~~~---vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf 330 (343)
+++.||+|||-|++.... .+. .-=++--+.+++.+.+.+..|.+.+ .+|.-++.| ++.-..+.++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~-----GY~~WSl~D-nfEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTR-----GYFVWSFMD-LYELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchh-hhchhccccCccceE
Confidence 344489999999986542 110 0112334455555555554565543 367777777 433323489999999
Q ss_pred cCCCC
Q 019260 331 APTRQ 335 (343)
Q Consensus 331 ~~d~~ 335 (343)
+-|..
T Consensus 457 ~VD~~ 461 (503)
T PLN02849 457 SVNFS 461 (503)
T ss_pred EECCC
Confidence 88654
No 25
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=75.62 E-value=33 Score=35.62 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHhcccccCC-CceEEEEEecccccCC------Cc----hhHHHHHHHHH-HHHHHHHcCCCCceEEee-eeec
Q 019260 101 WVQNNVRNFAN-NVKFKYIAVGNEAKPG------DN----FAQYLVPAMRN-IQNAINAAGLGNQIKVST-AIET 162 (343)
Q Consensus 101 wv~~~v~~~~~-~~~I~~I~VGNE~l~~------~~----~~~~Lv~~m~~-vr~~L~~~gl~~~I~VsT-~~~~ 162 (343)
.+.+-|+.|.. +-.|-+|++.||+... .+ +++++...|++ ++-+|++.|++.++|+=. .|.+
T Consensus 209 Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 209 YFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 34445555532 5679999999999852 12 57788888886 999999999855688744 4443
No 26
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=73.82 E-value=20 Score=35.10 Aligned_cols=115 Identities=13% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCEEEEecC--CC---chhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCC-C---chhHHHHHHHHHHHHHH
Q 019260 75 SNIEVMLGLP--NN---DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-D---NFAQYLVPAMRNIQNAI 145 (343)
Q Consensus 75 ~gi~V~lGv~--~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-~---~~~~~Lv~~m~~vr~~L 145 (343)
.++||++.|- .. ....++++.+.....++ ++..+.....+.+|.+==|-... + +....++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5799998874 22 23344444433333222 22222111234455554343221 1 23567899999999999
Q ss_pred HHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 146 NAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 146 ~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
++.+- ...++.+.... ...+...+ -+.-|++..|++.+-.|-|..
T Consensus 148 ~~~~~--~~~ls~av~~~---------~~~~~~~~------d~~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 148 EPEAP--RLLLTAAVSAG---------KETIDAAY------DIPEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HhhCc--CeEEEEEecCC---------hHHHhhcC------CHHHHhhhcceEEEecccCCC
Confidence 98731 13445443211 10111000 122367778999999988764
No 27
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=73.31 E-value=11 Score=33.39 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=44.6
Q ss_pred HHHHHHhcC--CCEEEEecCCCchh---hhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCc--hhHHHHHHHH
Q 019260 67 EALEALRGS--NIEVMLGLPNNDLR---RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN--FAQYLVPAMR 139 (343)
Q Consensus 67 ~vl~A~~~~--gi~V~lGv~~~~~~---~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~--~~~~Lv~~m~ 139 (343)
.-++.+++. |+||++.|...... .++++.....+.+ +++..+.....+.+|-+==|.....+ ....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345555554 99999998864322 1233333222221 22222211224555555444432211 3577999999
Q ss_pred HHHHHHHHcCC
Q 019260 140 NIQNAINAAGL 150 (343)
Q Consensus 140 ~vr~~L~~~gl 150 (343)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977643
No 28
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=73.03 E-value=7.4 Score=40.16 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=44.9
Q ss_pred ccEEEecccCCCCCCC---CC---CCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeecCCCCCCC-CCCCeeee
Q 019260 258 LGIVISESGWPTAGGD---GA---LTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDENGKTGP-EIERHWGL 329 (343)
Q Consensus 258 ~~vvItETGWPS~G~~---~~---vas~~na~~y~~~l~~~~~-~gtp~rp~~~~~~f~F~~FDe~wK~g~-~~E~~wGl 329 (343)
+||+|||-|....... +. .-=+.--+.|++.+.+.+. .|.+.+ .+|.-++.| ++.-.. +.++.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-----GY~~WSl~D-n~EW~~G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELL-----GYTTWGCID-LVSAGTGEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchH-hhcccCCCccCeece
Confidence 4899999999865431 10 0124445666666666663 565544 366677776 433222 38899999
Q ss_pred ecCCCC
Q 019260 330 FAPTRQ 335 (343)
Q Consensus 330 f~~d~~ 335 (343)
+.-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 988754
No 29
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=72.04 E-value=10 Score=39.17 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=44.4
Q ss_pred ccEEEecccCCCCCC---CCC---CCCHHHHHHHHHHHHHHH-hhcCCCCCCCCccEEEEEeecCCCCCCCC-CCCeeee
Q 019260 258 LGIVISESGWPTAGG---DGA---LTNVDNARTYNNNLIQHV-KRGSPKRPGRPIETYIFAMFDENGKTGPE-IERHWGL 329 (343)
Q Consensus 258 ~~vvItETGWPS~G~---~~~---vas~~na~~y~~~l~~~~-~~gtp~rp~~~~~~f~F~~FDe~wK~g~~-~E~~wGl 329 (343)
+||+|||-|...... .+. .-=+.--+.+++.+.+.+ +.|.+.+ .+|.-++.| ++.-..+ ..+.|||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~-----GY~~WSl~D-n~Ew~~G~y~~RfGl 441 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLM-----GYTPWGCID-LVSAGTGEMKKRYGF 441 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeE-----EEeeccccc-cccccCCccccceee
Confidence 589999999985442 110 011334555666666666 4565544 377777777 3333233 7899999
Q ss_pred ecCCCC
Q 019260 330 FAPTRQ 335 (343)
Q Consensus 330 f~~d~~ 335 (343)
++-|.+
T Consensus 442 v~VD~~ 447 (476)
T PRK09589 442 IYVDKD 447 (476)
T ss_pred EEEcCC
Confidence 988654
No 30
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.30 E-value=20 Score=35.73 Aligned_cols=58 Identities=17% Similarity=0.413 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCC-CC---CCCCHHHHHHHHHHHHHHHh
Q 019260 234 SYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG-DG---ALTNVDNARTYNNNLIQHVK 294 (343)
Q Consensus 234 ~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~-~~---~vas~~na~~y~~~l~~~~~ 294 (343)
.|.|-|++.+--.-..+...|....+|+.| |||.|. .+ ...|...++.-+.++++.+.
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 366777654433323334567788899998 999998 22 13667777777888888776
No 31
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=67.18 E-value=6.4 Score=34.75 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=26.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
+++|+..|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 6799999999999999999999999999999875443
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=66.57 E-value=8.1 Score=39.86 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=43.7
Q ss_pred ccEEEecccCCCCCC---CCC---CCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeee
Q 019260 258 LGIVISESGWPTAGG---DGA---LTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGL 329 (343)
Q Consensus 258 ~~vvItETGWPS~G~---~~~---vas~~na~~y~~~l~~~~~-~gtp~rp~~~~~~f~F~~FDe-~wK~g~~~E~~wGl 329 (343)
+||+|||-|...... .+. .-=++--+.+++.+.+.+. .|.+.+ .+|.-++.|- .|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-----GY~~WSl~DnfEw~~-G~y~~RfGl 442 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLM-----GYTPWGCIDCVSFTT-GQYSKRYGF 442 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhcccC-CCccCccce
Confidence 589999999986442 110 0123344555666666663 565544 3677777772 2433 348899999
Q ss_pred ecCCCC
Q 019260 330 FAPTRQ 335 (343)
Q Consensus 330 f~~d~~ 335 (343)
++-|.+
T Consensus 443 ~~VD~~ 448 (477)
T PRK15014 443 IYVNKH 448 (477)
T ss_pred EEECCC
Confidence 977543
No 33
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=66.15 E-value=15 Score=28.57 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=31.5
Q ss_pred CCceEEEEEeccc-ccCC--------Cc-hhHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 019260 111 NNVKFKYIAVGNE-AKPG--------DN-FAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 160 (343)
Q Consensus 111 ~~~~I~~I~VGNE-~l~~--------~~-~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~ 160 (343)
-..+|.+--|+|| .... ++ ..+.+.+.|+++-+.+++.. .+.|||+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d--P~~pvt~g~ 64 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD--PSQPVTSGF 64 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT---TTS-EE--B
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC--CCCcEEeec
Confidence 3578999999999 5521 11 35778999999999999865 457887653
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=66.09 E-value=17 Score=37.52 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=42.3
Q ss_pred ccEEEecccCCCCCC---CCCC---CCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCC-CCCCCeeeee
Q 019260 258 LGIVISESGWPTAGG---DGAL---TNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTG-PEIERHWGLF 330 (343)
Q Consensus 258 ~~vvItETGWPS~G~---~~~v---as~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g-~~~E~~wGlf 330 (343)
+||+|||-|...... .+.+ -=+.--+.+++.+.+.+..|.+.+ .+|.-++.| ++.-. ++..+.|||+
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~-----GY~~WSl~D-n~Ew~~G~y~~RfGLv 439 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLM-----GYTTWGCID-LVSASTGEMSKRYGFV 439 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEE-----EEEeecccc-cccccCCCccceeeeE
Confidence 489999999985542 1100 112234445555555544565543 366667776 44332 2378999999
Q ss_pred cCCCC
Q 019260 331 APTRQ 335 (343)
Q Consensus 331 ~~d~~ 335 (343)
+-|.+
T Consensus 440 ~VD~~ 444 (474)
T PRK09852 440 YVDRD 444 (474)
T ss_pred EECCC
Confidence 88754
No 35
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=65.40 E-value=78 Score=30.40 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=63.3
Q ss_pred HHHHHHhc--CCCEEE--E--ecCCCc-hhhhhhcHHHHHHHHHhcccccCCCceEEEEEecc-cccCC-C--chhHHHH
Q 019260 67 EALEALRG--SNIEVM--L--GLPNND-LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGN-EAKPG-D--NFAQYLV 135 (343)
Q Consensus 67 ~vl~A~~~--~gi~V~--l--Gv~~~~-~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-E~l~~-~--~~~~~Lv 135 (343)
..+.+++. .++||+ + |=|... ...++++++...+.++ ++..+.....+.+|-+=- |-... + +....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455554 579998 4 335432 4456666554444433 333332222455554421 11111 1 2346688
Q ss_pred HHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 136 PAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 136 ~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
..|+.+|.+|.+.|+. +-|+.+-.... .+....+. . --+..|++.+|++.+=.|=|..
T Consensus 134 ~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~----~---~d~~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 134 QLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFT----R---KDFEKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHhhcCCE--EEEEEcCcccc-----cccccccc----c---cCHHHHHhhccEEEEEeeccCC
Confidence 9999999999887652 33433211100 00000111 0 0123477888999988887654
No 36
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=64.41 E-value=21 Score=33.16 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCEEEEecCCCch---hhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHHHHHHHH
Q 019260 67 EALEALRGSNIEVMLGLPNNDL---RRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQN 143 (343)
Q Consensus 67 ~vl~A~~~~gi~V~lGv~~~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~ 143 (343)
..+++++..|+||++.|..... ..+..+.....+++ +++..+.....+.+|-+==|-... ....+...++.+|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi-~~lv~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALV-DKIINYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHH-HHHHHHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 4566777789999988865421 22333433333332 233222212234555554454321 13567788999999
Q ss_pred HHHHcCC
Q 019260 144 AINAAGL 150 (343)
Q Consensus 144 ~L~~~gl 150 (343)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987664
No 37
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=63.73 E-value=25 Score=25.52 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 019260 41 LPSKRDVIALYNQNNIRRMRLYDPN-----REALEALRGSNIEVMLGLPN 85 (343)
Q Consensus 41 ~ps~~~v~~ll~s~~~~~VRlY~~d-----~~vl~A~~~~gi~V~lGv~~ 85 (343)
.-+++++++..+.+|++.|=+=+-+ +...+.++..||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3467889999999999998887766 45566677899999999864
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=61.35 E-value=10 Score=38.97 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=41.6
Q ss_pred ccEEEecccCCCCCC--CCC---CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeeecC
Q 019260 258 LGIVISESGWPTAGG--DGA---LTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAP 332 (343)
Q Consensus 258 ~~vvItETGWPS~G~--~~~---vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~~FDe~wK~g~~~E~~wGlf~~ 332 (343)
.||+|||-|...... .+. .-=++--+.|++.+.+.+..|.+.+ .+|.-++.| ++.-..+..+.|||++-
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~-----GY~~WSl~D-n~Ew~~Gy~~RfGLv~V 441 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVK-----GYFIWSLMD-VFSWSNGYEKRYGLFYV 441 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchh-hhchhccccCccceEEE
Confidence 379999999986442 110 0122334455555555544554433 255555665 44433358999999988
Q ss_pred CCC
Q 019260 333 TRQ 335 (343)
Q Consensus 333 d~~ 335 (343)
|.+
T Consensus 442 D~~ 444 (467)
T TIGR01233 442 DFD 444 (467)
T ss_pred CCC
Confidence 653
No 39
>PRK09936 hypothetical protein; Provisional
Probab=61.22 E-value=59 Score=31.49 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=44.5
Q ss_pred CCceeeEEecCCCCC-CCCHHHHHH---HHHhCCCCEEEEe-----cCC--------hHHHHHHhcCCCEEEEecCCCc
Q 019260 26 SGAQIGVCYGMLGNN-LPSKRDVIA---LYNQNNIRRMRLY-----DPN--------REALEALRGSNIEVMLGLPNND 87 (343)
Q Consensus 26 ~~~~~Gv~Yg~~~~~-~ps~~~v~~---ll~s~~~~~VRlY-----~~d--------~~vl~A~~~~gi~V~lGv~~~~ 87 (343)
..+-.|+=|-|...+ --++++-.+ .++..|++.+=+= +.| .+.|+++.+.||+|.+|++.|.
T Consensus 18 ~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 18 SQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred hhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 445678889998766 356666654 5567888775442 222 4688888899999999999873
No 40
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=55.06 E-value=34 Score=31.60 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHcCCCCccEEEecccCCCCCCC-CC---CCCHHHHHHHHHHHHHHHh
Q 019260 251 EKTGGGSLGIVISESGWPTAGGD-GA---LTNVDNARTYNNNLIQHVK 294 (343)
Q Consensus 251 ~k~g~~~~~vvItETGWPS~G~~-~~---vas~~na~~y~~~l~~~~~ 294 (343)
..+++++.+|+.+ |||.|.. +. ..+...+...+..+++.+.
T Consensus 43 ~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3567777666665 9999972 11 2455556666677777664
No 41
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=54.22 E-value=92 Score=29.63 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=60.2
Q ss_pred hcCCCEEEEecCCC-----chhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCC---chhHHHHHHHHHHHHH
Q 019260 73 RGSNIEVMLGLPNN-----DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQNA 144 (343)
Q Consensus 73 ~~~gi~V~lGv~~~-----~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~---~~~~~Lv~~m~~vr~~ 144 (343)
+..|+||++.|... ....+..+.+.... +.++|..+.....+.+|-+==|-.... +....+...|+.+|.+
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 35699998877654 22233333221111 122222221112366666644554322 3567788999999999
Q ss_pred HHHcCCC-CceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 145 INAAGLG-NQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 145 L~~~gl~-~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
|++.+-. ....++.+....... .... .+..|.+.+|++.+-.|-|..
T Consensus 149 l~~~~~~~~~~~ls~a~p~~~~~--------------~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKGYILSVAVPPSPDY--------------YDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHSTSEEEEEEECSHHH--------------HTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccceeEEeecccccccc--------------cccc--ccccccccccccccccccCCC
Confidence 9885110 013455442211110 0111 235577889999999888776
No 42
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=53.41 E-value=55 Score=31.45 Aligned_cols=124 Identities=14% Similarity=0.268 Sum_probs=63.0
Q ss_pred HHHHhc--CCCEEEEecCC----CchhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCC-chhHHHHHHHHHH
Q 019260 69 LEALRG--SNIEVMLGLPN----NDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNI 141 (343)
Q Consensus 69 l~A~~~--~gi~V~lGv~~----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~Lv~~m~~v 141 (343)
+.+++. .++||++.|-. +....+.++.+.....+ ++|..+.....+.+|-+==|..... +....++..|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 445554 48999998865 12334444433222222 2222222222466666644543221 2345688899999
Q ss_pred HHHHHHcCC-CCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 142 QNAINAAGL-GNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 142 r~~L~~~gl-~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
|+.|.+... .....++.+.. |....... ..+.+..|++.+|++.+-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v~---------~~~~~~~~-----~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAVP---------AGPDKIDK-----GYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEec---------CChHHHHh-----hhhhHHHHHhhCcEEEEeeeccCC
Confidence 999986410 01134444432 11111100 001024477888999988887765
No 43
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=53.34 E-value=33 Score=25.48 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccccCCCceEEEEEecccccCCCc----hhHHHHHHHHHHHHHHHHc
Q 019260 95 QAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAINAA 148 (343)
Q Consensus 95 ~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~----~~~~Lv~~m~~vr~~L~~~ 148 (343)
.+.+.+|+++||.- |++.+++++ ..+.|+|+++..++.++..
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45678899988753 556666442 4677999999999888653
No 44
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.14 E-value=21 Score=32.30 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=30.2
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEE
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVM 80 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~ 80 (343)
+++|+..|+++||+.+..+.-+.++.+.||.|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998877889999999997
No 45
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=52.75 E-value=25 Score=33.89 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=57.1
Q ss_pred CceEEEEEecccccC----CC---c--hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCc----cccc
Q 019260 112 NVKFKYIAVGNEAKP----GD---N--FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRG----SFKQ 178 (343)
Q Consensus 112 ~~~I~~I~VGNE~l~----~~---~--~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g----~f~~ 178 (343)
...|....+|+|.-- |. . .+..|...+.+||+.| +..+|||-+-.|+.+.. |.|.-| .|+
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~-~~p~dg~gd~~f~- 89 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFG-YQPADGSGDVYFH- 89 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcC-cCCCCCCCccccc-
Confidence 356889999999542 22 1 2467888888888886 23579999988887764 555544 444
Q ss_pred CccchhhhHHHHHhhcCCcceecccccccccCC
Q 019260 179 DYRPILDPLIRFLNENRSPLLLNLYPYFAIAGN 211 (343)
Q Consensus 179 ~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~ 211 (343)
|.|+. -..+.||++|+.|.=.+-..+
T Consensus 90 -----LDpLW--a~~~IDfIGID~Y~PLSDwrd 115 (299)
T PF13547_consen 90 -----LDPLW--ADPNIDFIGIDNYFPLSDWRD 115 (299)
T ss_pred -----Ccccc--cCCcCCEEEeecccccCCCCC
Confidence 23442 235679999998865544333
No 46
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.57 E-value=22 Score=31.98 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=29.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEE
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVM 80 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~ 80 (343)
+++|+..|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998878889999999987
No 47
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=47.86 E-value=53 Score=29.75 Aligned_cols=53 Identities=25% Similarity=0.427 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchh-hhHHHHHhhcCCcceecc
Q 019260 135 VPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPIL-DPLIRFLNENRSPLLLNL 202 (343)
Q Consensus 135 v~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~-~p~l~fL~~~~d~~~vN~ 202 (343)
-.+++.+.+.+...|+.+ |++.+..... ++ + .+.. .++++.+.+.+=++.+|+
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~-----~~--------~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGF-----DP--------D-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTC-----CT--------T-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcc-----cc--------c-cHHHHHHHHHHHHhhccceeeec
Confidence 367788888888888876 8776643111 11 1 1233 488898888887777774
No 48
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=47.80 E-value=2.9e+02 Score=27.59 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCHHHHHHHH---HhCCCCEEEEecCC--------------hHHHHHHhcC-CC-EEEEecCCCchhhhhhcHHHHHHH
Q 019260 41 LPSKRDVIALY---NQNNIRRMRLYDPN--------------REALEALRGS-NI-EVMLGLPNNDLRRIASNQAEANTW 101 (343)
Q Consensus 41 ~ps~~~v~~ll---~s~~~~~VRlY~~d--------------~~vl~A~~~~-gi-~V~lGv~~~~~~~~a~~~~~a~~w 101 (343)
.-++++|++.+ ...|++.|.+.+.+ .++++++... |+ .+-++--. ...+. .+.+ ..
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~--~ell-~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDID--EELL-EA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCC--HHHH-HH
Confidence 45678887644 44689999985421 2566666543 44 34444211 11111 1222 22
Q ss_pred HHhcccccCCCceEEEEEecccccCC--------CchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCC
Q 019260 102 VQNNVRNFANNVKFKYIAVGNEAKPG--------DNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSR 173 (343)
Q Consensus 102 v~~~v~~~~~~~~I~~I~VGNE~l~~--------~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~ 173 (343)
++++ ......|.+|=|-... +.+.++...+++.+|+.. .| +.+++..-. ++|
T Consensus 241 m~~~------~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P--- 300 (414)
T TIGR01579 241 IASE------KRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP--- 300 (414)
T ss_pred HHhc------CccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC---
Confidence 3221 0012345566554332 235567777777777632 12 556655321 244
Q ss_pred cccccCccchhhhHHHHHhhcCCcceecccccccc
Q 019260 174 GSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 208 (343)
Q Consensus 174 g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~ 208 (343)
.+-...+...++|+.+. .+-.+++|||--.
T Consensus 301 ----gET~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 ----GESEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred ----CCCHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 12223456677877653 4556677776443
No 49
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=46.93 E-value=48 Score=34.62 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=53.6
Q ss_pred HcCCCCccEEEecccCCCCCCC--------CCCCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeec-CCCCCCC
Q 019260 252 KTGGGSLGIVISESGWPTAGGD--------GALTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFD-ENGKTGP 321 (343)
Q Consensus 252 k~g~~~~~vvItETGWPS~G~~--------~~vas~~na~~y~~~l~~~~~-~gtp~rp~~~~~~f~F~~FD-e~wK~g~ 321 (343)
|-.++|.+|.|+|-|-+...+. ....=++..+.|++.+.+.+. .|+= -..+|..++-| =.|..
T Consensus 402 K~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvn-----v~GYf~WSLmDnfEw~~-- 474 (524)
T KOG0626|consen 402 KDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVN-----VKGYFVWSLLDNFEWLD-- 474 (524)
T ss_pred HhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCc-----eeeEEEeEcccchhhhc--
Confidence 3457899999999999986531 112345566777777777764 3432 33588888887 34444
Q ss_pred CCCCeeeeecC------CCCeeee
Q 019260 322 EIERHWGLFAP------TRQPRYQ 339 (343)
Q Consensus 322 ~~E~~wGlf~~------d~~~ky~ 339 (343)
+..-.|||++- .|.||-+
T Consensus 475 Gy~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 475 GYKVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred CcccccccEEEeCCCCCcCCchhH
Confidence 46788999984 4566643
No 50
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.69 E-value=3.4e+02 Score=28.12 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=69.5
Q ss_pred eeEEecCCCCCCCCHHHHHHHH---HhCCCCEEEEecCC--------------hHHHHHHhc-CCCE-EEEecCCCchhh
Q 019260 30 IGVCYGMLGNNLPSKRDVIALY---NQNNIRRMRLYDPN--------------REALEALRG-SNIE-VMLGLPNNDLRR 90 (343)
Q Consensus 30 ~Gv~Yg~~~~~~ps~~~v~~ll---~s~~~~~VRlY~~d--------------~~vl~A~~~-~gi~-V~lGv~~~~~~~ 90 (343)
+..-+|+.. --++++|++.+ ...|++.|.+.+.+ .++|+++.. .|++ +-++.... ..
T Consensus 176 ip~~rG~~r--sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p--~~ 251 (502)
T PRK14326 176 VPSLRGKEK--DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHP--AE 251 (502)
T ss_pred eeccCCCcc--cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccCh--hh
Confidence 333445443 34568887644 34688888776542 135565543 2442 33332211 11
Q ss_pred hhhcHHHHHHHHHhcccccCCCceEEEEEecccccC--------CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeec
Q 019260 91 IASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIET 162 (343)
Q Consensus 91 ~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~ 162 (343)
+ +.+.+ +.+++. + .....+.+|=|-.. ++.+.++...+++.+|++. . .+.|+|..
T Consensus 252 ~--~~ell-~~m~~~-----g-~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~-----~-~i~i~~~~-- 314 (502)
T PRK14326 252 F--TDDVI-EAMAET-----P-NVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAM-----P-DAAITTDI-- 314 (502)
T ss_pred C--CHHHH-HHHHhc-----C-CcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCeEEEEE--
Confidence 2 12222 222222 1 11345556655433 2235677777787777752 2 26677653
Q ss_pred cccccccCCCCcccccCccchhhhHHHHHhhcCCcceeccccc
Q 019260 163 GALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPY 205 (343)
Q Consensus 163 ~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPf 205 (343)
+. +|| .+-...+...++|+.+. -+-.+++++|
T Consensus 315 --Iv-GfP-------gET~edf~~Tl~~i~~~-~~~~~~~f~~ 346 (502)
T PRK14326 315 --IV-GFP-------GETEEDFQATLDVVREA-RFSSAFTFQY 346 (502)
T ss_pred --EE-ECC-------CCCHHHHHHHHHHHHHc-CCCEEEEEee
Confidence 22 344 12223456677877553 3444566664
No 51
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.98 E-value=3.1e+02 Score=27.73 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=65.6
Q ss_pred CCHHHHHHHH---HhCCCCEEEEec-------CC-------hHHHHHHhcCCC-EEEEecCCCchhhhhhcHHHHHHHHH
Q 019260 42 PSKRDVIALY---NQNNIRRMRLYD-------PN-------REALEALRGSNI-EVMLGLPNNDLRRIASNQAEANTWVQ 103 (343)
Q Consensus 42 ps~~~v~~ll---~s~~~~~VRlY~-------~d-------~~vl~A~~~~gi-~V~lGv~~~~~~~~a~~~~~a~~wv~ 103 (343)
-+.++|++.+ ...|++.|.+.+ .+ .++++.+...|+ .+-++..+. ..+. .+.+. .++
T Consensus 167 r~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p--~~i~--~ell~-~l~ 241 (440)
T PRK14334 167 RHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHP--MNFT--DDVIA-AMA 241 (440)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCc--ccCC--HHHHH-HHH
Confidence 3567776543 346777777643 22 246666665565 344432211 1121 12211 122
Q ss_pred hcccccCCCceEEEEEecccccC--------CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcc
Q 019260 104 NNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGS 175 (343)
Q Consensus 104 ~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~ 175 (343)
+ . + ..+..+.+|=|-.. ++.+.++.+.+++.+|++. . .+.++|..-. ++| |
T Consensus 242 ~----~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---g- 300 (440)
T PRK14334 242 E----T-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---G- 300 (440)
T ss_pred h----c-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---C-
Confidence 1 1 1 12445666655432 2235667778888877652 2 2555554321 244 1
Q ss_pred cccCccchhhhHHHHHhhcCCcceecccccc
Q 019260 176 FKQDYRPILDPLIRFLNENRSPLLLNLYPYF 206 (343)
Q Consensus 176 f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff 206 (343)
+-...+...++|+.+ ..+-.+++|+|-
T Consensus 301 ---Et~ed~~~tl~~i~~-l~~~~i~~f~ys 327 (440)
T PRK14334 301 ---ETEEDFQETLSLYDE-VGYDSAYMFIYS 327 (440)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEeeeeEee
Confidence 112344566777654 345567777753
No 52
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=42.82 E-value=3.7e+02 Score=27.13 Aligned_cols=93 Identities=15% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCEEEEecCCCchhhhh----------------hc-HHHHHHHHH---hcccccCCCceEEEEEecccccC
Q 019260 67 EALEALRGSNIEVMLGLPNNDLRRIA----------------SN-QAEANTWVQ---NNVRNFANNVKFKYIAVGNEAKP 126 (343)
Q Consensus 67 ~vl~A~~~~gi~V~lGv~~~~~~~~a----------------~~-~~~a~~wv~---~~v~~~~~~~~I~~I~VGNE~l~ 126 (343)
.+|+++++.|+..+++.-|+...-+. .+ .+.-...+. +....+ ...|++|.-=||+-.
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~--GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW--GINFDYISPFNEPQW 185 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT--T--EEEEE--S-TTS
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc--CCccceeCCcCCCCC
Confidence 47888888898888887775211111 00 011111111 122222 468999999999987
Q ss_pred CC-----c----hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeecc
Q 019260 127 GD-----N----FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETG 163 (343)
Q Consensus 127 ~~-----~----~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~ 163 (343)
.. + ..++....|+.++.+|++.||.. +|...+..+
T Consensus 186 ~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~~ 229 (384)
T PF14587_consen 186 NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAGD 229 (384)
T ss_dssp -GG--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEESS
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchhh
Confidence 52 1 46788999999999999999975 466666543
No 53
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=42.56 E-value=3.1e+02 Score=26.16 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=40.9
Q ss_pred cCCCEEEEecC--CC---chhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHHHHHHHHHHHHc
Q 019260 74 GSNIEVMLGLP--NN---DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAA 148 (343)
Q Consensus 74 ~~gi~V~lGv~--~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~ 148 (343)
+.++||++.|- .. ....++++.....+.+ +++..+.....+.+|-+==|-....+....++..|+.+|++|.+.
T Consensus 64 ~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi-~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~ 142 (299)
T cd02879 64 NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFI-NSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDE 142 (299)
T ss_pred CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHH-HHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 46789998774 32 2344555544333333 233333222245566554443222234567889999999999853
No 54
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=42.15 E-value=39 Score=30.38 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEec
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 83 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv 83 (343)
+++|+..|++.+|+.+..+.=+.++.+.|+.|.==+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 679999999999999998877889999999997333
No 55
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.01 E-value=4.1e+02 Score=27.11 Aligned_cols=192 Identities=12% Similarity=0.162 Sum_probs=92.2
Q ss_pred CCCHHHHHHH---HHhCCCCEEEEecCC-----------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHHHHh
Q 019260 41 LPSKRDVIAL---YNQNNIRRMRLYDPN-----------REALEALRG-SNI-EVMLGLPNNDLRRIASNQAEANTWVQN 104 (343)
Q Consensus 41 ~ps~~~v~~l---l~s~~~~~VRlY~~d-----------~~vl~A~~~-~gi-~V~lGv~~~~~~~~a~~~~~a~~wv~~ 104 (343)
--++++|++. +...|++.|.+.+.+ ..+|.++.. .++ .+-++..+. ..+. .+ ....+++
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~~--~e-ll~~m~~ 256 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDFP--DH-LLSLMAK 256 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccCC--HH-HHHHHHh
Confidence 3457887653 345689999988654 245555543 232 333333221 1121 11 1112222
Q ss_pred cccccCCCceEEEEEeccc-----ccC---CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc
Q 019260 105 NVRNFANNVKFKYIAVGNE-----AKP---GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF 176 (343)
Q Consensus 105 ~v~~~~~~~~I~~I~VGNE-----~l~---~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f 176 (343)
. + .....+.+|=| +|- ++.+.++...+++.+|++.. .+.++|.. +. +||
T Consensus 257 ~-----~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~----Iv-GfP------ 313 (449)
T PRK14332 257 N-----P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDI----IV-GFP------ 313 (449)
T ss_pred C-----C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEE----Ee-eCC------
Confidence 1 1 12456777744 331 23367788888888887632 25566542 22 354
Q ss_pred ccCccchhhhHHHHHhhcCCcceecccccccccCCCCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCC
Q 019260 177 KQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGG 256 (343)
Q Consensus 177 ~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~ 256 (343)
.+-...+...++|+. ...|-.+++|+|-..... + .+..+.. .........++..+.+-|-.-.....++.=++
T Consensus 314 -gET~edf~~tl~~v~-~l~~~~~~~f~ys~~~GT---~-a~~~~~~-~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~ 386 (449)
T PRK14332 314 -NETEEEFEDTLAVVR-EVQFDMAFMFKYSEREGT---M-AKRKLPD-NVPEEVKSARLTKLVDLQTSISHEQNRARIGR 386 (449)
T ss_pred -CCCHHHHHHHHHHHH-hCCCCEEEEEEecCCCCC---h-hHHhCcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 122234556677664 345556777776544321 0 1101110 11111223345555554444334444444347
Q ss_pred CccEEEecccC
Q 019260 257 SLGIVISESGW 267 (343)
Q Consensus 257 ~~~vvItETGW 267 (343)
..+|+|.|.+.
T Consensus 387 ~~~vlve~~~~ 397 (449)
T PRK14332 387 VYSILIENTSR 397 (449)
T ss_pred EEEEEEEeccC
Confidence 78899976544
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=40.98 E-value=68 Score=27.15 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHhcCCCEEEEecCCC
Q 019260 44 KRDVIALYNQNNIRRMRLYDP---------------------N--REALEALRGSNIEVMLGLPNN 86 (343)
Q Consensus 44 ~~~v~~ll~s~~~~~VRlY~~---------------------d--~~vl~A~~~~gi~V~lGv~~~ 86 (343)
++++++.|+..+++.|-+|.- | .++++|+.+.||+|++=+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 567777777777777777642 1 468889999999999877654
No 57
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=40.71 E-value=3.3e+02 Score=25.89 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHHH---HhcCCCEEEEecCCCch---hhhhhcHHHHHHHHHhcc
Q 019260 40 NLPSKRDVIALYNQNNIRRMRLYDPN-------REALEA---LRGSNIEVMLGLPNNDL---RRIASNQAEANTWVQNNV 106 (343)
Q Consensus 40 ~~ps~~~v~~ll~s~~~~~VRlY~~d-------~~vl~A---~~~~gi~V~lGv~~~~~---~~~a~~~~~a~~wv~~~v 106 (343)
+.+++.+..+.|+..|++.|-+-++. ..+.+. ....--++.+|-+.=.. ..-..+.+.+..-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 46899999999999999999999875 234443 33334689999875221 001122333333344443
Q ss_pred cccCCCceEEEEEecccccCCCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhh
Q 019260 107 RNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDP 186 (343)
Q Consensus 107 ~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p 186 (343)
..-.++..+..+-=||+- ... ..-..++..|++.+..+ +-|+|.+ ++| -+..
T Consensus 136 ~~~~~~~a~vlmGHGt~h-----~an---~~Y~~l~~~l~~~~~~~-v~vgtvE-------G~P------------~~~~ 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH-----PAN---AAYSALQAMLKKHGYPN-VFVGTVE-------GYP------------SLED 187 (262)
T ss_dssp -TT-TTEEEEEEE---SC-----HHH---HHHHHHHHHHHCCT-TT-EEEEETT-------SSS------------BHHH
T ss_pred cccCCCCEEEEEeCCCCC-----Ccc---HHHHHHHHHHHhCCCCe-EEEEEeC-------CCC------------CHHH
Confidence 322234444444445442 122 23344567788877654 8999986 344 2456
Q ss_pred HHHHHhhcCCcceecccccccc
Q 019260 187 LIRFLNENRSPLLLNLYPYFAI 208 (343)
Q Consensus 187 ~l~fL~~~~d~~~vN~yPff~~ 208 (343)
++..|.+. .+=-|.+.||.-=
T Consensus 188 vi~~L~~~-g~k~V~L~PlMlV 208 (262)
T PF06180_consen 188 VIARLKKK-GIKKVHLIPLMLV 208 (262)
T ss_dssp HHHHHHHH-T-SEEEEEEESSS
T ss_pred HHHHHHhc-CCCeEEEEecccc
Confidence 66666553 3446889998754
No 58
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.44 E-value=34 Score=34.19 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEE
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVML 81 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~l 81 (343)
+++|+..|+++|||. ++|.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 679999999999999 778888889999999873
No 59
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.81 E-value=4.1e+02 Score=26.76 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCHHHHHHH---HHhCCCCEEEEecCC--------------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHH
Q 019260 41 LPSKRDVIAL---YNQNNIRRMRLYDPN--------------REALEALRG-SNI-EVMLGLPNNDLRRIASNQAEANTW 101 (343)
Q Consensus 41 ~ps~~~v~~l---l~s~~~~~VRlY~~d--------------~~vl~A~~~-~gi-~V~lGv~~~~~~~~a~~~~~a~~w 101 (343)
--|+++|++. +...|++.|.+.+.+ .++|+++.. .|+ .+-++.... ..+. .+.+ +.
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~i~--~ell-~~ 226 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHP--KDIS--QKLI-DA 226 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccCh--hhcC--HHHH-HH
Confidence 4467887653 345689888888654 135555543 232 343332211 1121 1222 22
Q ss_pred HHhcccccCCCceEEEEEecccccC--------CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCC
Q 019260 102 VQNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSR 173 (343)
Q Consensus 102 v~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~ 173 (343)
+++. + .....+.+|=|... ++...+++..+++.+|+++ ++ +.++|.. + -+||
T Consensus 227 l~~~-----~-~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----pg-i~i~~d~----I-vGfP--- 286 (418)
T PRK14336 227 MAHL-----P-KVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM-----PD-ISLQTDL----I-VGFP--- 286 (418)
T ss_pred HHhc-----C-ccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhC-----CC-CEEEEEE----E-EECC---
Confidence 2221 1 12335555544432 2235677888888888763 22 6666654 2 2354
Q ss_pred cccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 174 GSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 174 g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
.+-...+...++|+.+. .+-.+|+++|--
T Consensus 287 ----GET~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 287 ----SETEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred ----CCCHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 12223456677777653 344556666543
No 60
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=38.26 E-value=31 Score=33.47 Aligned_cols=217 Identities=18% Similarity=0.182 Sum_probs=109.5
Q ss_pred hHHHHHHhcCCCEEE--EecCCCchhhhhh------------cHHHHHHHHHhcccccCCC-ceEEEEEecccccCCCc-
Q 019260 66 REALEALRGSNIEVM--LGLPNNDLRRIAS------------NQAEANTWVQNNVRNFANN-VKFKYIAVGNEAKPGDN- 129 (343)
Q Consensus 66 ~~vl~A~~~~gi~V~--lGv~~~~~~~~a~------------~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNE~l~~~~- 129 (343)
..+++-+..+||+|- .-||....+.... -.+....+|.+-+..| .. .+|...-|=||++..+.
T Consensus 62 D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~ 140 (320)
T PF00331_consen 62 DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGN 140 (320)
T ss_dssp HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSS
T ss_pred hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCc
Confidence 357777788888765 5566643332111 1234456676655555 43 48999999999997531
Q ss_pred -------h------hHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCC
Q 019260 130 -------F------AQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRS 196 (343)
Q Consensus 130 -------~------~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d 196 (343)
. ++.+..+.+..|++..+ ++.---+ .+++. + .-...+..+++.|.+.+-
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gv 202 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGV 202 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTH
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCC
Confidence 1 24556677777776542 3333222 11111 0 001234556666655433
Q ss_pred c---ceecccccccccCCCCCCccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEecccCCCCCCC
Q 019260 197 P---LLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGD 273 (343)
Q Consensus 197 ~---~~vN~yPff~~~~~~~i~~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETGWPS~G~~ 273 (343)
+ +++-.| |.. . + . .+.+..+|+++.--+++|.|||--=......
T Consensus 203 pIdgIG~Q~H--~~~---------------------~----~-~-----~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 203 PIDGIGLQSH--FDA---------------------G----Y-P-----PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp CS-EEEEEEE--EET---------------------T----S-S-----HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred ccceechhhc--cCC---------------------C----C-C-----HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 2 222111 000 0 0 1 2333344444444568999999855544432
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEE-eecC-CCCCCCCCCCeeeeecCCCCeeee
Q 019260 274 GALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFA-MFDE-NGKTGPEIERHWGLFAPTRQPRYQ 339 (343)
Q Consensus 274 ~~vas~~na~~y~~~l~~~~~~gtp~rp~~~~~~f~F~-~FDe-~wK~g~~~E~~wGlf~~d~~~ky~ 339 (343)
......+.|+.+++.+++.+.+- | +. .+.-+.+. +.|. .|..... -.+=+||+.|.+||-.
T Consensus 250 ~~~~~~~~qA~~~~~~~~~~~~~-~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 250 PDAEEEEAQAEYYRDFLTACFSH-P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT-T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred cchHHHHHHHHHHHHHHHHHHhC-C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 10144677888999999888521 1 01 34444444 5553 3554211 2234899999999853
No 61
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.75 E-value=1.3e+02 Score=30.93 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccc
Q 019260 127 GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 206 (343)
Q Consensus 127 ~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff 206 (343)
|+-+.++.+.-++.+|++... +-++|.. +. +|| |+=.+ -....++| .+..-|=.+|++||=
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd------~~i~tDi----IV-GFP---gETee----dFe~tl~l-v~e~~fd~~~~F~YS 335 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPD------IAISTDI----IV-GFP---GETEE----DFEETLDL-VEEVRFDRLHVFKYS 335 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCC------ceEeccE----EE-ECC---CCCHH----HHHHHHHH-HHHhCCCEEeeeecC
Confidence 444667788888888887543 5555553 22 365 22222 22344553 456678899999974
Q ss_pred c
Q 019260 207 A 207 (343)
Q Consensus 207 ~ 207 (343)
.
T Consensus 336 p 336 (437)
T COG0621 336 P 336 (437)
T ss_pred C
Confidence 3
No 62
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.24 E-value=42 Score=33.56 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEec
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 83 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv 83 (343)
+++|+..|+++|||.+ +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6799999999999998 8888888999999987333
No 63
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.90 E-value=48 Score=33.37 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
.++|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999888899999999985544
No 64
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=36.38 E-value=76 Score=26.66 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 46 DVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 46 ~v~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
.+.++|+.+|++.|=+..--+..+++|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578899999999998888889999999999999999977
No 65
>PRK08815 GTP cyclohydrolase; Provisional
Probab=36.23 E-value=50 Score=33.13 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=32.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999888899999999974443
No 66
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.44 E-value=50 Score=32.68 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHhCCCCEEEEecCC-hHHHHHHhcCCCEEE
Q 019260 48 IALYNQNNIRRMRLYDPN-REALEALRGSNIEVM 80 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d-~~vl~A~~~~gi~V~ 80 (343)
.++|+..|+++|||.+.+ |.=+.++.+.||+|.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 679999999999999999 887888999999886
No 67
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.05 E-value=57 Score=33.00 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=31.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEec
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 83 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv 83 (343)
.++|+..|+++||+.+.+|.=+.++.+.||+|.=-+
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 679999999999999999988889999999997333
No 68
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.74 E-value=57 Score=33.55 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=32.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
.++|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6799999999999999999888899999999973333
No 69
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.11 E-value=59 Score=34.29 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
+++|+..|+++|||.+.+|.=+.++.+.||+|.=-++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999999999999999884444
No 70
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.80 E-value=3.6e+02 Score=24.21 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCCEEEEecCC---------hHHHHHHhcCCCEEEE--ecCCCchhhhhhcHHHHHHHHHhcccccCCCc
Q 019260 45 RDVIALYNQNNIRRMRLYDPN---------REALEALRGSNIEVML--GLPNNDLRRIASNQAEANTWVQNNVRNFANNV 113 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY~~d---------~~vl~A~~~~gi~V~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 113 (343)
..+++.|.+.|.++|=+.+.. .....+++..|+++.. ..+.....+.....+.+.+|++.+ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 344566666777777665433 1233456677877621 111111112222234556665543 1
Q ss_pred eEEEEEecccccCCCchhHHHHHHHHHHHHHHHHcCC--CCceEEeeeeecc
Q 019260 114 KFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGL--GNQIKVSTAIETG 163 (343)
Q Consensus 114 ~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl--~~~I~VsT~~~~~ 163 (343)
.+++|.+.|+.+. ...+ ++|++.|+ +++|.|.+-+...
T Consensus 171 ~~~ai~~~~d~~a--------~g~~----~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 171 KPVGIFACTDARA--------RQLL----EACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred CCcEEEecChHHH--------HHHH----HHHHHhCCCCCCceEEEeeCCch
Confidence 2457777766532 2222 34444555 4567777766544
No 71
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=32.73 E-value=4.5e+02 Score=25.18 Aligned_cols=118 Identities=12% Similarity=0.228 Sum_probs=61.0
Q ss_pred cCCCEEEEecCC--C--chhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCC---------CchhHHHHHHHHH
Q 019260 74 GSNIEVMLGLPN--N--DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG---------DNFAQYLVPAMRN 140 (343)
Q Consensus 74 ~~gi~V~lGv~~--~--~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~---------~~~~~~Lv~~m~~ 140 (343)
+.++||++.|-. . ....++++....... .+++..+.....+.+|-+==|-... .+....++..|+.
T Consensus 82 ~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~F-i~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~ 160 (322)
T cd06548 82 NPHLKILLSIGGWTWSGGFSDAAATEASRAKF-ADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKE 160 (322)
T ss_pred CCCCEEEEEEeCCCCCCCchhHhCCHHHHHHH-HHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHH
Confidence 356888877753 2 233444444332222 2333333223356666664442211 1245678999999
Q ss_pred HHHHHHHcCC--CCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccccc
Q 019260 141 IQNAINAAGL--GNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 208 (343)
Q Consensus 141 vr~~L~~~gl--~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~ 208 (343)
+|++|.+.|. +.+..+|.+.. |+...+. .. + +..|++.+|++.+-.|=|...
T Consensus 161 Lr~~l~~~~~~~~~~~~Ls~av~---------~~~~~~~-~~-----~-~~~l~~~vD~vnlMtYD~~g~ 214 (322)
T cd06548 161 LREALDALGAETGRKYLLTIAAP---------AGPDKLD-KL-----E-VAEIAKYLDFINLMTYDFHGA 214 (322)
T ss_pred HHHHHHHhhhccCCceEEEEEcc---------CCHHHHh-cC-----C-HHHHhhcCCEEEEEEeeccCC
Confidence 9999988641 11133444321 1111110 00 1 344778889999988877643
No 72
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=32.43 E-value=1.1e+02 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCEEEEe--cCC---hHHHHHHhcCCCEEEE
Q 019260 46 DVIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVML 81 (343)
Q Consensus 46 ~v~~ll~s~~~~~VRlY--~~d---~~vl~A~~~~gi~V~l 81 (343)
++.+.++.+|++.|+++ +.. ..+|.+++..|+++.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 34556777899999988 333 5799999999988653
No 73
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=31.04 E-value=3e+02 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCEEEEecCCC
Q 019260 67 EALEALRGSNIEVMLGLPNN 86 (343)
Q Consensus 67 ~vl~A~~~~gi~V~lGv~~~ 86 (343)
.+|+++.+.||||++|++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 57888889999999999975
No 74
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.52 E-value=6e+02 Score=25.91 Aligned_cols=135 Identities=12% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCHHHHHHH---HHhCCCCEEEEecCC--------------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHHH
Q 019260 42 PSKRDVIAL---YNQNNIRRMRLYDPN--------------REALEALRG-SNI-EVMLGLPNNDLRRIASNQAEANTWV 102 (343)
Q Consensus 42 ps~~~v~~l---l~s~~~~~VRlY~~d--------------~~vl~A~~~-~gi-~V~lGv~~~~~~~~a~~~~~a~~wv 102 (343)
-++++|++. +...|++.|.+.+.+ .++|+++.+ .|+ ++-++.-+. ..+. .+.+. .+
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p--~~i~--~ell~-~l 258 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHP--AWMT--DRLIH-AV 258 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecCh--hhcC--HHHHH-HH
Confidence 356777653 345689999988732 246677766 354 343332221 1121 11111 12
Q ss_pred HhcccccCCCceEEEEEecccccC--------CCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCc
Q 019260 103 QNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRG 174 (343)
Q Consensus 103 ~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g 174 (343)
++ . + ..+..+.+|=|... ++.+.++....++.+|+.+ . .+.|+|..-. ++|
T Consensus 259 ~~----~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~-----p-gi~i~~d~Iv-----G~P---- 317 (459)
T PRK14338 259 AR----L-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI-----P-DVSLTTDIIV-----GHP---- 317 (459)
T ss_pred hc----c-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC----
Confidence 11 1 1 12345555444332 2235677777777777642 2 2666655321 233
Q ss_pred ccccCccchhhhHHHHHhhcCCcceecccccc
Q 019260 175 SFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 206 (343)
Q Consensus 175 ~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff 206 (343)
.+-...+...++|+.+ ..+-.+++++|-
T Consensus 318 ---gET~ed~~~ti~~l~~-l~~~~v~i~~ys 345 (459)
T PRK14338 318 ---GETEEQFQRTYDLLEE-IRFDKVHIAAYS 345 (459)
T ss_pred ---CCCHHHHHHHHHHHHH-cCCCEeEEEecC
Confidence 1112345666777755 344456677764
No 75
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.29 E-value=4.6e+02 Score=25.71 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=39.9
Q ss_pred CceeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecCC
Q 019260 27 GAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPN 85 (343)
Q Consensus 27 ~~~~Gv~Yg~~~~~~ps~~~v~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~ 85 (343)
...+|||.-...++ |..++.++.+...+++.|=+..-+|..++.++..|++|+.-|+.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 34678888544322 33456667666667777766655666678889999999988874
No 76
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=29.25 E-value=5.2e+02 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccccc
Q 019260 130 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 208 (343)
Q Consensus 130 ~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~ 208 (343)
....++..|+.+|++|++.++- +-++.+.... +...| -+..|++..||+.+-.|=|+..
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~--------~~~~~----------d~~~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGLL--LTLTVLPHVN--------STWYF----------DVPAIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCcE--EEEEecCCch--------hcccc----------CHHHHhhcCCEEEEEEecccCC
Confidence 3466888999999999877641 2222211000 00001 1234778889999999987643
No 77
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.75 E-value=4.9e+02 Score=26.19 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccc
Q 019260 130 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 206 (343)
Q Consensus 130 ~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff 206 (343)
+.++...+++.+|+.. . .+.++|.. +. +|| .+-...+...++|+.+ ..+-.+|+|+|-
T Consensus 263 t~~~~~~~v~~lr~~~-----p-~i~i~~d~----Iv-GfP-------gETeedf~~Tl~fl~~-l~~~~~~~f~~s 320 (420)
T PRK14339 263 TKEWFLNRAEKLRALV-----P-EVSISTDI----IV-GFP-------GESDKDFEDTMDVLEK-VRFEQIFSFKYS 320 (420)
T ss_pred CHHHHHHHHHHHHHHC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHh-cCCCEEeeEecC
Confidence 5677778888887752 2 26677642 22 355 1222345666777643 445556777643
No 78
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.68 E-value=1.3e+02 Score=27.72 Aligned_cols=63 Identities=17% Similarity=0.392 Sum_probs=39.5
Q ss_pred CEEEEecCC-----hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCceEEEEEeccccc
Q 019260 57 RRMRLYDPN-----REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAK 125 (343)
Q Consensus 57 ~~VRlY~~d-----~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 125 (343)
-.++|+++- ..+..+....-+.++|..-.....++ +....|+ ++|..+.++ .+.-+.|||-.=
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~-~~I~e~a~~-~v~~~LvGNK~D 128 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWI-KNIDEHASD-DVVKILVGNKCD 128 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHH-HHHHhhCCC-CCcEEEeecccc
Confidence 345667764 35677765555666666555444443 3345587 477777554 688899999863
No 79
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=28.64 E-value=99 Score=30.39 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=49.8
Q ss_pred hHHHHHHhcCC-CEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHHHHHHHHH
Q 019260 66 REALEALRGSN-IEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNA 144 (343)
Q Consensus 66 ~~vl~A~~~~g-i~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~ 144 (343)
..||+++...| +++ +|=.-.+.+ .++.|..|+...+.+++ ..|.+|+--|.-... .+| ++
T Consensus 175 m~VLkp~idsGkik~-~Ge~~~d~W----~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------GaI----~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQWTDGW----LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------GAI----AA 235 (341)
T ss_pred HHHHHHHhhCCceEE-eeecccccc----CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------HHH----HH
Confidence 36999988888 566 664433322 25667778877777764 348888877764321 122 46
Q ss_pred HHHcCCCCceEEeeee
Q 019260 145 INAAGLGNQIKVSTAI 160 (343)
Q Consensus 145 L~~~gl~~~I~VsT~~ 160 (343)
|+..||.+++|||=-|
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 7888999889977443
No 80
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.75 E-value=2.4e+02 Score=23.04 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHhCCCCEEEEecCC----------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCceEEEE
Q 019260 49 ALYNQNNIRRMRLYDPN----------REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 118 (343)
Q Consensus 49 ~ll~s~~~~~VRlY~~d----------~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I 118 (343)
+-|.+.|.++|-+.... .....++++.|+....-........... ......|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDA-REAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHH-HHHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhH-HHHHHHHHhcC----CC----cEE
Confidence 45667788888888743 1355677789987544333221111111 12222366444 12 378
Q ss_pred EecccccCCCchhHHHHHHHHHHHHHHHHcCC--CCceEEeeeee
Q 019260 119 AVGNEAKPGDNFAQYLVPAMRNIQNAINAAGL--GNQIKVSTAIE 161 (343)
Q Consensus 119 ~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl--~~~I~VsT~~~ 161 (343)
.++|+.+. .. +-.+|.+.|+ +.++.|-+-+.
T Consensus 73 i~~~~~~a-----~~-------~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 73 ICSNDRLA-----LG-------VLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp EESSHHHH-----HH-------HHHHHHHTTSCTTTTSEEEEESS
T ss_pred EEcCHHHH-----HH-------HHHHHHHcCCcccccccEEEecC
Confidence 88877532 22 2244555565 45576666553
No 81
>PF14903 WG_beta_rep: WG containing repeat
Probab=27.63 E-value=47 Score=20.47 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=13.0
Q ss_pred eeeecCCCCeeeeccc
Q 019260 327 WGLFAPTRQPRYQINF 342 (343)
Q Consensus 327 wGlf~~d~~~ky~~~~ 342 (343)
||+++.+|+.+.+..|
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999988876554
No 82
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=26.47 E-value=2.8e+02 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecCCCchh
Q 019260 43 SKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNNDLR 89 (343)
Q Consensus 43 s~~~v~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~~~~~ 89 (343)
....++++|...+++.|=.-..-+.....+...||+|+.+ ...++.
T Consensus 41 ~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i~ 86 (94)
T PF02579_consen 41 GGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDIE 86 (94)
T ss_dssp HSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBHH
T ss_pred cchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCHH
Confidence 3456788888888988866677789999999999999999 434443
No 83
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.24 E-value=1.2e+02 Score=27.52 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCCEEEEecCCC
Q 019260 48 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNN 86 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~~ 86 (343)
+++|+..|++.||+-+.+|.=..++.+.||+|.--++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999988888999999998888764
No 84
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.16 E-value=1.5e+02 Score=30.20 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCEEEEe--cCC-------------hH---HHHHHhcCCC-----EEEEecCCCchhhhhhcHHHHHHH
Q 019260 45 RDVIALYNQNNIRRMRLY--DPN-------------RE---ALEALRGSNI-----EVMLGLPNNDLRRIASNQAEANTW 101 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY--~~d-------------~~---vl~A~~~~gi-----~V~lGv~~~~~~~~a~~~~~a~~w 101 (343)
++.++.|+..|+++|-+= +.+ .. .++.++..|+ .++.|++.+....+......+..
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 466777887788766432 222 12 3333444454 57889998776666544444332
Q ss_pred HHhcccccCCCceEEEEE-------------ecccccCCCchhHHHHHHHHHHHHHHHHcCCC
Q 019260 102 VQNNVRNFANNVKFKYIA-------------VGNEAKPGDNFAQYLVPAMRNIQNAINAAGLG 151 (343)
Q Consensus 102 v~~~v~~~~~~~~I~~I~-------------VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl~ 151 (343)
..| +.|..-. +|.+.+. ..++.+..++.+...|.++|+.
T Consensus 231 -------l~p-~~i~~y~l~~~p~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 231 -------LSP-DRIAVFGYAHVPSRRKNQRLIDEAALP---DAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred -------cCC-CEEEEeccccccchhhHHhcCCccCCc---CHHHHHHHHHHHHHHHHHCCCE
Confidence 111 1222111 1221111 2456677788899999999984
No 85
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=25.89 E-value=1.7e+02 Score=24.39 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHhcCCCEEEE
Q 019260 45 RDVIALYNQNNIRRMRLY--D--------PN---REALEALRGSNIEVML 81 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY--~--------~d---~~vl~A~~~~gi~V~l 81 (343)
+++.+..+.+|++.|+++ + +. ..+|++++..||++..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 345566677899988887 3 23 4699999999998753
No 86
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=25.49 E-value=1.7e+02 Score=24.44 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 019260 40 NLPSKRDVIALYNQNNIRRMRLYDPN-----REALEALRGSNIEVMLGLPN 85 (343)
Q Consensus 40 ~~ps~~~v~~ll~s~~~~~VRlY~~d-----~~vl~A~~~~gi~V~lGv~~ 85 (343)
...+++++++..++.|++.|=+=+-+ +.....++..||++++|+-.
T Consensus 14 g~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 14 GKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 34588999999999999988777654 35556677799999999986
No 87
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.60 E-value=4.4e+02 Score=24.33 Aligned_cols=70 Identities=7% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC--------hHHHHHHhc-CCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCC
Q 019260 42 PSKRDVIALYNQNNIRRMRLYDPN--------REALEALRG-SNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANN 112 (343)
Q Consensus 42 ps~~~v~~ll~s~~~~~VRlY~~d--------~~vl~A~~~-~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 112 (343)
.+|-++++.+++.|++.+=+.|.| .++++.+.. .-++|.+|=-...+ +.+..++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-------e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDI-------EKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCH-------HHHHHHHHC--------
Confidence 368889998988999999999876 257777665 44578876433222 233334432
Q ss_pred ceEEEEEecccccCC
Q 019260 113 VKFKYIAVGNEAKPG 127 (343)
Q Consensus 113 ~~I~~I~VGNE~l~~ 127 (343)
.+..|+||++.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899999864
No 88
>PRK07198 hypothetical protein; Validated
Probab=24.31 E-value=66 Score=32.52 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=32.6
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHhcCCCEEEEecC
Q 019260 48 IALYNQNNIRRM-RLYDPNREALEALRGSNIEVMLGLP 84 (343)
Q Consensus 48 ~~ll~s~~~~~V-RlY~~d~~vl~A~~~~gi~V~lGv~ 84 (343)
.++|+..|+++| |+.+.++.=+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 678999999999 9999999888899999999985554
No 89
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=24.23 E-value=1.5e+02 Score=24.12 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCEEEEe--cCC---hHHHHHHhcCCCEEEE
Q 019260 47 VIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVML 81 (343)
Q Consensus 47 v~~ll~s~~~~~VRlY--~~d---~~vl~A~~~~gi~V~l 81 (343)
+.+.++..|++.|+++ +.. ..+|.+++.+|++|.-
T Consensus 52 ~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 52 IAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 4456677899999888 333 4789999999998654
No 90
>CHL00041 rps11 ribosomal protein S11
Probab=23.54 E-value=2e+02 Score=23.78 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCEEEEe--cCC---hHHHHHHhcCCCEEE
Q 019260 47 VIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVM 80 (343)
Q Consensus 47 v~~ll~s~~~~~VRlY--~~d---~~vl~A~~~~gi~V~ 80 (343)
+.+.++..|++.|+++ +.. ..++.+++..|+++.
T Consensus 65 ~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 65 AIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4456667899998888 332 578999999998865
No 91
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.03 E-value=7.8e+02 Score=24.74 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=41.7
Q ss_pred EEEEEecccccCC--------CchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhh
Q 019260 115 FKYIAVGNEAKPG--------DNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDP 186 (343)
Q Consensus 115 I~~I~VGNE~l~~--------~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p 186 (343)
...+.+|=|-... +.+.++...+++.+|+.+ . .+.|+|.. +. +|| .+-...+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----P-DASISSDI----IV-GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHH
Confidence 3567777665432 225567777777777752 2 26677664 21 344 122234566
Q ss_pred HHHHHhhcCCcceecccccccc
Q 019260 187 LIRFLNENRSPLLLNLYPYFAI 208 (343)
Q Consensus 187 ~l~fL~~~~d~~~vN~yPff~~ 208 (343)
.++|+.+. .+-.+|+++|-..
T Consensus 312 tl~fi~~~-~~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKA-QFERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhc-CCCEEeeeeccCC
Confidence 77877653 4555666665443
No 92
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.62 E-value=2.3e+02 Score=25.99 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCC
Q 019260 42 PSKRDVIALYNQNNIRRMRLYDPN---------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFAN 111 (343)
Q Consensus 42 ps~~~v~~ll~s~~~~~VRlY~~d---------~~vl~A~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~ 111 (343)
.+|-++++.+...|++.+=+-|.| ..++..++ ..++.|.+|=-..+. +.+..|+...
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~-------ed~~~ll~~G------ 95 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSI-------EDAERLLDAG------ 95 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SH-------HHHHHHHHTT------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcH-------HHHHHHHHhC------
Confidence 467889998899999999888765 23555544 578999999664332 3344444322
Q ss_pred CceEEEEEecccccCCCc
Q 019260 112 NVKFKYIAVGNEAKPGDN 129 (343)
Q Consensus 112 ~~~I~~I~VGNE~l~~~~ 129 (343)
+..|++|+|.+.+.+
T Consensus 96 ---a~~Vvigt~~~~~~~ 110 (229)
T PF00977_consen 96 ---ADRVVIGTEALEDPE 110 (229)
T ss_dssp ----SEEEESHHHHHCCH
T ss_pred ---CCEEEeChHHhhchh
Confidence 447899999886543
No 93
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.54 E-value=1.7e+02 Score=26.89 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCEEEEecCCCchh-hh--hhcHHHHHHH---HHhcccccCCCceEEEEEecccccCCC------chhHHH
Q 019260 67 EALEALRGSNIEVMLGLPNNDLR-RI--ASNQAEANTW---VQNNVRNFANNVKFKYIAVGNEAKPGD------NFAQYL 134 (343)
Q Consensus 67 ~vl~A~~~~gi~V~lGv~~~~~~-~~--a~~~~~a~~w---v~~~v~~~~~~~~I~~I~VGNE~l~~~------~~~~~L 134 (343)
+-++.++..|+||+++|-..... .+ +.+.+...++ +.+-+..| .+.+|-+-=|.-... .....+
T Consensus 55 ~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y----glDGiDiD~E~~~~~~~~~~~~~~~~~ 130 (255)
T cd06542 55 TYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY----GLDGVDFDDEYSGYGKNGTSQPSNEAF 130 (255)
T ss_pred HHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh----CCCceEEeeeecccCCCCCCcchHHHH
Confidence 45566778999999887643221 11 1222222222 22333333 466676665543221 134568
Q ss_pred HHHHHHHHHHHHH
Q 019260 135 VPAMRNIQNAINA 147 (343)
Q Consensus 135 v~~m~~vr~~L~~ 147 (343)
+..|+.+|+.+..
T Consensus 131 ~~lv~~Lr~~~~~ 143 (255)
T cd06542 131 VRLIKELRKYMGP 143 (255)
T ss_pred HHHHHHHHHHhCc
Confidence 8889999988754
No 94
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.21 E-value=98 Score=30.50 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=51.2
Q ss_pred CChHHHHHHhcCCCEEEEecCCCc------hhhhhhc-H----HHHHHHHHhcccccCCCceEEEEEecccccC-CCchh
Q 019260 64 PNREALEALRGSNIEVMLGLPNND------LRRIASN-Q----AEANTWVQNNVRNFANNVKFKYIAVGNEAKP-GDNFA 131 (343)
Q Consensus 64 ~d~~vl~A~~~~gi~V~lGv~~~~------~~~~a~~-~----~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~-~~~~~ 131 (343)
+.+.++.|+.++|++|+-++-.+. +..+-++ . ..|..-+ .+..+| .+.++.+=-|... ..+..
T Consensus 47 Pp~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv--~lak~y---GfDGw~iN~E~~~~~~~~~ 121 (339)
T cd06547 47 PPADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLV--EVAKYY---GFDGWLINIETELGDAEKA 121 (339)
T ss_pred CCcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHH--HHHHHh---CCCceEeeeeccCCcHHHH
Confidence 446899999999999988875432 1222222 1 1122111 233443 3556666667655 33567
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 019260 132 QYLVPAMRNIQNAINAAGLG 151 (343)
Q Consensus 132 ~~Lv~~m~~vr~~L~~~gl~ 151 (343)
+.|..-|+.+++.+++.+-+
T Consensus 122 ~~l~~F~~~L~~~~~~~~~~ 141 (339)
T cd06547 122 KRLIAFLRYLKAKLHENVPG 141 (339)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 88999999999999876443
No 95
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=22.10 E-value=4e+02 Score=24.43 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhCCCCEEEEecCC--------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCc
Q 019260 43 SKRDVIALYNQNNIRRMRLYDPN--------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNV 113 (343)
Q Consensus 43 s~~~v~~ll~s~~~~~VRlY~~d--------~~vl~A~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 113 (343)
+|.++++.+++.|++.+=+.|.| ..++..+. ..+++|++|--....+ .+..++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~e-------dv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLE-------NAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHH-------HHHHHHHc---------
Confidence 57888999998899999998876 24666654 4688999886654332 22222221
Q ss_pred eEEEEEecccccCC
Q 019260 114 KFKYIAVGNEAKPG 127 (343)
Q Consensus 114 ~I~~I~VGNE~l~~ 127 (343)
....|++|+|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 23457899999865
No 96
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.08 E-value=5.3e+02 Score=24.94 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=13.3
Q ss_pred hHHHHHHhcCCCEEEEecCCC
Q 019260 66 REALEALRGSNIEVMLGLPNN 86 (343)
Q Consensus 66 ~~vl~A~~~~gi~V~lGv~~~ 86 (343)
++.++.++++|..+.+++-..
T Consensus 187 ~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 187 PALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHHHHHcCCcEEEEecCC
Confidence 456666766676666666543
No 97
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.95 E-value=1.3e+02 Score=31.16 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=27.0
Q ss_pred HHHHHhCCCCEEEEecCC------hHHHHHHhcCCCEEEEecCC
Q 019260 48 IALYNQNNIRRMRLYDPN------REALEALRGSNIEVMLGLPN 85 (343)
Q Consensus 48 ~~ll~s~~~~~VRlY~~d------~~vl~A~~~~gi~V~lGv~~ 85 (343)
++....+|++.+|+|+.- ...++++++.|..+.+.+-.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 344567899999999863 24556778899886655554
No 98
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.63 E-value=4.9e+02 Score=24.90 Aligned_cols=95 Identities=25% Similarity=0.333 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccccccccCCCCCC
Q 019260 136 PAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQIS 215 (343)
Q Consensus 136 ~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~~~~~~~i~ 215 (343)
.+...++.+.+..|+-+ +++..... .+.|+ .+.+.|+.++..+.+-++.+|.=+......
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~----- 172 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAG----- 172 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCcc-----
Confidence 35566777777777754 55543321 11111 234688999999999999986544333211
Q ss_pred ccccccccCcceeccCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeccc--CCCCCC
Q 019260 216 LDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESG--WPTAGG 272 (343)
Q Consensus 216 ~~~alf~~~~~~~~d~~~~y~n~~da~vdav~~a~~k~g~~~~~vvItETG--WPS~G~ 272 (343)
+.... .+ .+ .++-+. . -+++++||+++.| +|..-.
T Consensus 173 ~~~~~--------~~------p~---~~~~va---~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGH--------SD------PL---YLDDVA---R--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCC--------CC------ch---HHHHHH---H--HCCCCcEEEEecCCCCchhHH
Confidence 00000 00 11 233331 2 3799999999999 887665
No 99
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=21.63 E-value=2.2e+02 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCCccEEEecccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 019260 243 LDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRP 301 (343)
Q Consensus 243 vdav~~a~~k~g~~~~~vvItETGWPS~G~~~~vas~~na~~y~~~l~~~~~~gtp~rp 301 (343)
.|+++.-|...+ =|-.|.++ .+|.+.|-.-.++.+..+..+||++.
T Consensus 39 KD~I~q~m~~F~------------dp~~G~pA-F~s~~QQ~~mlq~~l~k~~~~t~L~E 84 (120)
T PRK15321 39 KDSIYQEMNAFK------------DPNSGDSA-FVSFEQQTAMLQNMLAKVEPGTHLYE 84 (120)
T ss_pred HHHHHHHHHHhC------------CCCCCCcc-cccHHHHHHHHHHHHHhcCCCchHHH
Confidence 477776665543 37777777 59999999999999888877777663
No 100
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=21.58 E-value=5.6e+02 Score=25.65 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCCEEEEecC----------C------------hHHHHHHhcCCCEEEEecCCCc-----------hhhh
Q 019260 45 RDVIALYNQNNIRRMRLYDP----------N------------REALEALRGSNIEVMLGLPNND-----------LRRI 91 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY~~----------d------------~~vl~A~~~~gi~V~lGv~~~~-----------~~~~ 91 (343)
++....+++.||+.||+.-+ + .++++.+.+.||.|++-+-.-. ....
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 55677889999999999732 2 1356777889999999744311 1111
Q ss_pred hh---c-HHHHHHHHHhccc-ccCCCceEEEEEecccccC--CCchhHHH-HHHHHHHHHHHHHcC
Q 019260 92 AS---N-QAEANTWVQNNVR-NFANNVKFKYIAVGNEAKP--GDNFAQYL-VPAMRNIQNAINAAG 149 (343)
Q Consensus 92 a~---~-~~~a~~wv~~~v~-~~~~~~~I~~I~VGNE~l~--~~~~~~~L-v~~m~~vr~~L~~~g 149 (343)
.. + ......| ..|. .|-....|.++-+=||+.. ..+..... -++...|++.+.+.-
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 11 0 1222333 2233 3434567878888999984 12333333 488888876665543
No 101
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.50 E-value=2.2e+02 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHhcCCCEEEE
Q 019260 45 RDVIALYNQNNIRRMRLY--D--------PN---REALEALRGSNIEVML 81 (343)
Q Consensus 45 ~~v~~ll~s~~~~~VRlY--~--------~d---~~vl~A~~~~gi~V~l 81 (343)
+++.+.++.+|++.|+++ + +. ..+|.+++..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 345566778899998888 3 33 4699999999998753
No 102
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=21.34 E-value=69 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=13.2
Q ss_pred cCCcceecccccccccC
Q 019260 194 NRSPLLLNLYPYFAIAG 210 (343)
Q Consensus 194 ~~d~~~vN~yPff~~~~ 210 (343)
.-|.+.||.|||-+...
T Consensus 91 ~idlVvvNlYpF~~~~~ 107 (187)
T cd01421 91 PIDLVVVNLYPFEETVA 107 (187)
T ss_pred CeeEEEEcccChHHHhc
Confidence 34889999999977553
No 103
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.27 E-value=7.7e+02 Score=24.53 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=64.4
Q ss_pred hCCCCEEEEecCC-------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccCCCceEEEEEeccccc
Q 019260 53 QNNIRRMRLYDPN-------REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAK 125 (343)
Q Consensus 53 s~~~~~VRlY~~d-------~~vl~A~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 125 (343)
..|++.|||---+ ..++++++..|+.+=+||.-..++. .. +..| .
T Consensus 91 ~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~-----~~--------~~ky-g-------------- 142 (346)
T TIGR00612 91 AKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLER-----RL--------LEKY-G-------------- 142 (346)
T ss_pred HhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcH-----HH--------HHHc-C--------------
Confidence 4679999997433 4688999999999999998766542 11 1123 1
Q ss_pred CCCchh-HHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhhHHHHHhhcCCcceecccc
Q 019260 126 PGDNFA-QYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYP 204 (343)
Q Consensus 126 ~~~~~~-~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yP 204 (343)
..++ ..+-.+|++++ .|.+.|+++ |+||-=- |-+ +.+-..-+.|++.+| ||
T Consensus 143 --~~t~eamveSAl~~v~-~le~~~F~d-iviS~Ks-------Sdv-----------~~~i~ayr~la~~~d------yP 194 (346)
T TIGR00612 143 --DATAEAMVQSALEEAA-ILEKLGFRN-VVLSMKA-------SDV-----------AETVAAYRLLAERSD------YP 194 (346)
T ss_pred --CCCHHHHHHHHHHHHH-HHHHCCCCc-EEEEEEc-------CCH-----------HHHHHHHHHHHhhCC------CC
Confidence 1233 34566777774 678999985 8877432 111 123344566787777 78
Q ss_pred ccccc
Q 019260 205 YFAIA 209 (343)
Q Consensus 205 ff~~~ 209 (343)
..=+.
T Consensus 195 LHlGV 199 (346)
T TIGR00612 195 LHLGV 199 (346)
T ss_pred ceecc
Confidence 76543
No 104
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.87 E-value=1.7e+02 Score=23.84 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCEEEEecCC-------hHHHHHHhcC---CCEEEEe
Q 019260 44 KRDVIALYNQNNIRRMRLYDPN-------REALEALRGS---NIEVMLG 82 (343)
Q Consensus 44 ~~~v~~ll~s~~~~~VRlY~~d-------~~vl~A~~~~---gi~V~lG 82 (343)
++++++..+..+.+.|=+-..+ +.+++.+++. ++++++|
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4677777777667777666554 3456666655 5778888
No 105
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.45 E-value=1.5e+02 Score=25.99 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHhCCCC-EEEEecCC--hH----HHHHHhcCCCEEEEecCC
Q 019260 39 NNLPSKRDVIALYNQNNIR-RMRLYDPN--RE----ALEALRGSNIEVMLGLPN 85 (343)
Q Consensus 39 ~~~ps~~~v~~ll~s~~~~-~VRlY~~d--~~----vl~A~~~~gi~V~lGv~~ 85 (343)
+++|..++..+.|+..|+. .+|+.+.. ++ .++.+.+.|++|++.+-.
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4677788888999999985 48888886 33 333344578999999875
No 106
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.42 E-value=4.6e+02 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=17.9
Q ss_pred CCCEEEEecC---------ChHHHHHHhcCCCEEEEecCCCchhh
Q 019260 55 NIRRMRLYDP---------NREALEALRGSNIEVMLGLPNNDLRR 90 (343)
Q Consensus 55 ~~~~VRlY~~---------d~~vl~A~~~~gi~V~lGv~~~~~~~ 90 (343)
+++.||+.+- +++++..+++++ .+++++-.+....
T Consensus 186 hV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~-~~~v~~h~nhp~E 229 (417)
T TIGR03820 186 HVEVIRIGTRVPVVLPQRITDELVAILKKHH-PVWLNTHFNHPRE 229 (417)
T ss_pred CCceEEEeeccccccccccCHHHHHHHHhcC-CeEEEEeCCChHh
Confidence 4666666643 134555566655 3455554443333
No 107
>PRK05309 30S ribosomal protein S11; Validated
Probab=20.41 E-value=2.5e+02 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHHHHHhCCCCEEEEe--cCC---hHHHHHHhcCCCEEE
Q 019260 47 VIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVM 80 (343)
Q Consensus 47 v~~ll~s~~~~~VRlY--~~d---~~vl~A~~~~gi~V~ 80 (343)
+.+.++..|++.|+++ +.. ..+|.++...|++|.
T Consensus 69 ~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 69 AAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4556677899999999 332 578999998898865
No 108
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.39 E-value=4.2e+02 Score=24.40 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHh-CCCCEEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhcccccC
Q 019260 42 PSKRDVIALYNQ-NNIRRMRLYDPN---------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFA 110 (343)
Q Consensus 42 ps~~~v~~ll~s-~~~~~VRlY~~d---------~~vl~A~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~ 110 (343)
.+|.++++.+.+ .|++.+=+.|.| .+++..++ ..+++|.+|=-.... +.+..++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~-------e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTK-------SQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCH-------HHHHHHHHC------
Confidence 467788888877 789999999876 24776654 578999997554333 233333321
Q ss_pred CCceEEEEEecccccCC
Q 019260 111 NNVKFKYIAVGNEAKPG 127 (343)
Q Consensus 111 ~~~~I~~I~VGNE~l~~ 127 (343)
.+..|+||+|.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 23457899999864
No 109
>PRK09989 hypothetical protein; Provisional
Probab=20.17 E-value=6.7e+02 Score=22.88 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=37.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEec---CC-hHHHHHHhcCCCEEEE
Q 019260 30 IGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYD---PN-REALEALRGSNIEVML 81 (343)
Q Consensus 30 ~Gv~Yg~~~~~~ps~~~v~~ll~s~~~~~VRlY~---~d-~~vl~A~~~~gi~V~l 81 (343)
..+|-+..-..+ |..+.++.+++.||+.|-+.. -+ ..+.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 345666655444 567888999999999999843 33 4566778899999886
No 110
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=20.06 E-value=4.3e+02 Score=25.09 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=52.2
Q ss_pred hhhhhcHHHHHHHHHhcccccCCCceEEEEEecccccCCCchhHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccc
Q 019260 89 RRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGES 168 (343)
Q Consensus 89 ~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Lv~~m~~vr~~L~~~gl~~~I~VsT~~~~~~~~~~ 168 (343)
..+.++.+...++++ ++..+.....+.+|.+-=|.+. .+....+...|+.+|.+|++.|+. +.|+.+
T Consensus 80 ~~~l~~~~~R~~fi~-~iv~~~~~~~~dGidiD~E~~~-~~d~~~~~~fl~eL~~~l~~~~~~--lsv~v~--------- 146 (298)
T cd06549 80 ARLLADPSARAKFIA-NIAAYLERNQADGIVLDFEELP-ADDLPKYVAFLSELRRRLPAQGKQ--LTVTVP--------- 146 (298)
T ss_pred HHHhcCHHHHHHHHH-HHHHHHHHhCCCCEEEecCCCC-hhHHHHHHHHHHHHHHHhhhcCcE--EEEEec---------
Confidence 345555554444433 3333222234566766656542 234566888999999999987642 333322
Q ss_pred cCCCCcccccCccchhhhHHHHHhhcCCcceeccccccc
Q 019260 169 FPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 207 (343)
Q Consensus 169 ~pPs~g~f~~~~~~~~~p~l~fL~~~~d~~~vN~yPff~ 207 (343)
|....| + +..|++.+|++.+-.|=+..
T Consensus 147 --~~~~~~--d--------~~~l~~~~D~v~lMtYD~~~ 173 (298)
T cd06549 147 --ADEADW--N--------LKALARNADKLILMAYDEHY 173 (298)
T ss_pred --CCCCCC--C--------HHHHHHhCCEEEEEEeccCC
Confidence 111111 1 23367788999888887653
Done!