BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019261
         (343 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
          Length = 130

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 78/113 (69%), Gaps = 6/113 (5%)

Query: 96  EPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPXXXXXXXXXXXXXXXXXXXXFEDESGKCW 155
           E +FEK +TPSDVGKLNRLVIPK HAEK+FP                    FED +GK W
Sbjct: 11  EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLN------FEDVNGKVW 64

Query: 156 RFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRR 208
           RFRYSYWNSSQSYVLTKGWSR+VKEK L AGDV+ F R     ++L+IGW+ R
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 117


>pdb|1YEL|A Chain A, Structure Of The Hypothetical Arabidopsis Thaliana Protein
           At1g16640.1
          Length = 104

 Score = 30.8 bits (68), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 149 DESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVI--LFERHRT 196
           D SG+ W  R       +   LT GW  +VK+  L+ G  +  +++R RT
Sbjct: 46  DYSGRSWTVRMK--KRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRT 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,897,323
Number of Sequences: 62578
Number of extensions: 276316
Number of successful extensions: 489
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 3
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)