Query 019261
Match_columns 343
No_of_seqs 181 out of 491
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 6.1E-32 2.1E-36 229.7 15.5 115 92-212 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 6.2E-21 2.1E-25 165.4 13.3 102 93-210 43-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.7 1.4E-17 4.6E-22 135.5 11.8 96 95-209 7-102 (104)
4 1na6_A Ecorii, restriction end 94.4 0.039 1.3E-06 55.0 5.2 96 93-194 15-123 (404)
5 3o27_A Putative uncharacterize 58.2 14 0.00046 28.5 4.5 41 167-209 24-64 (68)
6 2vb2_X Copper protein, cation 55.1 12 0.00043 29.3 4.0 27 181-207 60-86 (88)
7 2qcp_X Cation efflux system pr 54.8 14 0.00047 28.5 4.2 27 181-207 52-78 (80)
8 1pqh_A Aspartate 1-decarboxyla 54.7 1.1E+02 0.0036 26.6 11.2 77 96-193 25-106 (143)
9 3oug_A Aspartate 1-decarboxyla 48.4 1.2E+02 0.0041 25.4 9.9 77 96-193 11-92 (114)
10 2c45_A Aspartate 1-decarboxyla 47.2 1.3E+02 0.0044 26.0 9.4 78 95-193 7-89 (139)
11 2k75_A Uncharacterized protein 45.3 33 0.0011 27.3 5.2 47 143-209 40-88 (106)
12 2k50_A Replication factor A re 41.0 78 0.0027 24.7 6.8 52 142-207 44-98 (115)
13 2l55_A SILB,silver efflux prot 39.6 40 0.0014 26.0 4.7 29 180-208 45-74 (82)
14 2glw_A PHS018, 92AA long hypot 35.1 1.6E+02 0.0055 23.0 8.3 21 175-195 66-86 (92)
15 1oa8_A Ataxin-1; RNA binding, 31.5 7 0.00024 33.5 -1.0 30 165-194 88-127 (133)
16 1mvf_D MAZE protein, PEMI-like 31.4 48 0.0016 24.9 3.9 38 161-204 8-45 (82)
17 2kbn_A Conserved protein; nucl 31.2 72 0.0025 25.3 5.1 52 142-209 36-89 (109)
18 3m7a_A Uncharacterized protein 30.6 65 0.0022 27.4 4.9 47 142-191 83-140 (140)
19 1yfb_A Transition state regula 29.4 67 0.0023 23.4 4.2 21 175-195 28-48 (59)
20 3e0e_A Replication protein A; 29.4 60 0.0021 25.2 4.2 34 144-194 41-74 (97)
21 2l66_A SSO7C4, transcriptional 28.1 74 0.0025 22.2 4.1 21 175-195 18-38 (53)
22 2cbp_A Cucumber basic protein; 27.7 19 0.00064 28.5 1.0 18 178-195 19-36 (96)
23 1x9u_A Umecyanin; cupredoxin, 27.6 20 0.00067 29.5 1.1 20 176-195 23-42 (116)
24 3dm3_A Replication factor A; p 23.7 2.5E+02 0.0087 22.1 7.1 34 144-194 44-77 (105)
25 3pjy_A Hypothetical signal pep 23.3 2E+02 0.0067 24.1 6.6 48 142-192 69-127 (136)
26 2e63_A KIAA1787 protein; struc 22.6 50 0.0017 28.7 2.9 24 180-205 115-138 (170)
27 1eik_A RNA polymerase subunit 21.7 86 0.0029 24.4 3.7 27 175-201 43-69 (77)
28 1o7i_A SSB, SSO2364, single st 21.0 1.7E+02 0.0058 23.2 5.6 51 142-209 39-91 (119)
29 4dok_A Similarity to chalcone- 20.8 78 0.0027 28.4 3.8 36 174-210 129-164 (208)
30 4ayb_H DNA-directed RNA polyme 20.0 96 0.0033 24.3 3.7 25 176-200 50-74 (84)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.98 E-value=6.1e-32 Score=229.70 Aligned_cols=115 Identities=64% Similarity=1.113 Sum_probs=104.4
Q ss_pred ccCccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEc
Q 019261 92 ELEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLT 171 (343)
Q Consensus 92 ~~~k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT 171 (343)
...+.++|+|+||+|||++++||+||+++|++|||.++..+ ..+++.|.++|.+|++|+|+|+||+++++|+|+
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~------~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt 80 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNV------SVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLT 80 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCC------SSCCEEEEEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCcccccc------CCCcEEEEEEeCCCCEEEEEEEEECCCCceEEc
Confidence 45678899999999999999999999999999999987531 245789999999999999999999999999999
Q ss_pred cChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCCCC
Q 019261 172 KGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGATA 212 (343)
Q Consensus 172 ~GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~~~ 212 (343)
+||+.||++|+|++||+|+|++.++++.+|+|+|||+.+..
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999999999866679999999999764
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.85 E-value=6.2e-21 Score=165.42 Aligned_cols=102 Identities=27% Similarity=0.390 Sum_probs=88.0
Q ss_pred cCccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEcc
Q 019261 93 LEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTK 172 (343)
Q Consensus 93 ~~k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~ 172 (343)
....|+|+|+||+|||.+.++|.||+++++++||..+. .+.+.|. |+.|.|+++|+++ ++.|++
T Consensus 43 ~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~-------------~i~L~~~-gk~W~v~~~~~~~--~~~ls~ 106 (146)
T 4i1k_A 43 EPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISG-------------FIKVQLA-EKQWPVRCLYKAG--RAKFSQ 106 (146)
T ss_dssp CCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCS-------------EEEEEET-TEEEEEEEEEETT--EEEECT
T ss_pred CCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCe-------------EEEEEEC-CcEEEEEEEEeCC--cEEECC
Confidence 34678999999999999878999999999999998642 3566777 6999999999864 789999
Q ss_pred ChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCC
Q 019261 173 GWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGA 210 (343)
Q Consensus 173 GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~ 210 (343)
||..||++|+|++||+|+|...+..+-.|.|.|.|+.+
T Consensus 107 GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 107 GWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp THHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred chHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999999999999997533479999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.74 E-value=1.4e-17 Score=135.49 Aligned_cols=96 Identities=24% Similarity=0.386 Sum_probs=81.5
Q ss_pred ccceEEEecccCCCCCCCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEEEcCCCCeEEEEEEEecCCCceEEccCh
Q 019261 95 KEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGW 174 (343)
Q Consensus 95 k~~lF~K~LT~SDVs~~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GW 174 (343)
..|.|.|+|+++|. ..+|.||+++++.+.+.+.. .+.++|..|+.|+++++++. .+++|++||
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~-------------~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW 69 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPI-------------TVDLLDYSGRSWTVRMKKRG--EKVFLTVGW 69 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCS-------------EEEEEETTSCEEEEEEEEET--TEEEECTTH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCCC-------------EEEEECCCCCEEEEEEEEEC--CcEEEccCh
Confidence 56799999999993 45999999999887654422 47788999999999999874 478999999
Q ss_pred HHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcC
Q 019261 175 SRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG 209 (343)
Q Consensus 175 s~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~ 209 (343)
.+||++|+|++||+|+|.... +.+|.|.|-|..
T Consensus 70 ~~Fv~~~~L~~GD~lvF~~~~--~~~f~V~If~~s 102 (104)
T 1yel_A 70 ENFVKDNNLEDGKYLQFIYDR--DRTFYVIIYGHN 102 (104)
T ss_dssp HHHHHHHTCCTTCEEEEEECS--SSEEEEEEECSS
T ss_pred HHHHHHcCCCCCCEEEEEEcC--CCeEEEEEECCC
Confidence 999999999999999999875 467999988754
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.36 E-value=0.039 Score=55.01 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred cCccceEEEecccCCCCC----CCcEEeehhhHhhcCCCCCCCCCCCCCCCCCceEEEE--EcCCCCeEEEEEEEec---
Q 019261 93 LEKEPMFEKPLTPSDVGK----LNRLVIPKQHAEKYFPLGGGGADLGSSSSDKGLLLSF--EDESGKCWRFRYSYWN--- 163 (343)
Q Consensus 93 ~~k~~lF~K~LT~SDVs~----~gRLvIPK~~AE~~fP~l~~s~d~~~~~~~~gi~L~v--~D~~Gk~W~FR~sywn--- 163 (343)
......|+|.|++.|++. ..++.||+..+..+||.++...+ .+....+.+ -|...-.+.++++|.+
T Consensus 15 ~~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e-----~~~~~~~~~~l~d~d~p~td~~~twYn~R~ 89 (404)
T 1na6_A 15 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRE-----LNPSVFLTAHVSSHDCPDSEARAIYYNSAH 89 (404)
T ss_dssp HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSS-----SSCEEEEEEEESSSCCCCEEEEEEEECGGG
T ss_pred cccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccc-----cCCcceeEEEeccCCCceEEEEEEEecccc
Confidence 345679999999999983 34799999889999998874322 122333333 3444455599999986
Q ss_pred ---CCCceEEccChH-HHHhhcCCCCCCEEEEEEe
Q 019261 164 ---SSQSYVLTKGWS-RYVKEKRLDAGDVILFERH 194 (343)
Q Consensus 164 ---ssrryvLT~GWs-~FVkdK~LkaGD~VvF~r~ 194 (343)
....|.||. |. .+.--+...+||.++|-+.
T Consensus 90 ~~~tRnEyRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 90 FGKTRNEKRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp TTSCCCEEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred cCCCCCceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 224589975 44 3444467789999999876
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=58.18 E-value=14 Score=28.48 Aligned_cols=41 Identities=7% Similarity=0.236 Sum_probs=31.8
Q ss_pred ceEEccChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcC
Q 019261 167 SYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRG 209 (343)
Q Consensus 167 ryvLT~GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~ 209 (343)
.|-|+= =.+++++-+|+.||.+.+.-+. .++++.+..+|-.
T Consensus 24 tyYInI-PaeI~kaLgIk~gD~fel~ve~-kdgeIvLcykRVK 64 (68)
T 3o27_A 24 TFYLLI-PKDIAEALDIKPDDTFILNMEQ-KDGDIVLSYKRVK 64 (68)
T ss_dssp CEEEEE-CHHHHHHTTCCTTCCEEEEEEE-ETTEEEEEEEECG
T ss_pred EEEEeC-cHHHHHHhCCCCCCEEEEEEec-CCCeEEEEehhhh
Confidence 444432 2799999999999999998875 3678988888844
No 6
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=55.14 E-value=12 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=18.7
Q ss_pred cCCCCCCEEEEEEeeCCCCcEEEEEEE
Q 019261 181 KRLDAGDVILFERHRTDSERLFIGWRR 207 (343)
Q Consensus 181 K~LkaGD~VvF~r~~~~~g~L~IgIRR 207 (343)
.+|++||.|.|...+.+++.....|++
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 579999999998876544433444443
No 7
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=54.85 E-value=14 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=18.6
Q ss_pred cCCCCCCEEEEEEeeCCCCcEEEEEEE
Q 019261 181 KRLDAGDVILFERHRTDSERLFIGWRR 207 (343)
Q Consensus 181 K~LkaGD~VvF~r~~~~~g~L~IgIRR 207 (343)
.+|++||.|.|.-.+.+++-....|++
T Consensus 52 ~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 579999999998876544433444443
No 8
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=54.69 E-value=1.1e+02 Score=26.59 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=54.5
Q ss_pred cceEEEecccCCCCCCCcEEeehhhHhh--cCCCCCCCCCCCCCCCCCceEEEEEcC-CCCeEEEEEEEec--CCCceEE
Q 019261 96 EPMFEKPLTPSDVGKLNRLVIPKQHAEK--YFPLGGGGADLGSSSSDKGLLLSFEDE-SGKCWRFRYSYWN--SSQSYVL 170 (343)
Q Consensus 96 ~~lF~K~LT~SDVs~~gRLvIPK~~AE~--~fP~l~~s~d~~~~~~~~gi~L~v~D~-~Gk~W~FR~sywn--ssrryvL 170 (343)
..|-..+.|..|+..-|.+.|-.+..+. ++|-. .+.++|. +|..|.- |.+.+ .|+.-.|
T Consensus 25 sKIHRatVT~AdL~Y~GSITID~dLldaAgIl~~E---------------kV~IvNvnNG~RfeT-YvI~GerGSG~I~l 88 (143)
T 1pqh_A 25 GKLHRVKVTHADLHYEGTCAIDQDFLDAAGILENE---------------AIDIWNVTNGKRFST-YAIAAERGSRIISV 88 (143)
T ss_dssp EEEEEEECCBCCSSSCCCEEEEHHHHHHHTCCTTC---------------EEEEEETTTCCEEEE-EEEEECTTCCCEEC
T ss_pred hhhcceEEeccccccceeEEECHHHHHHcCCCCCC---------------EEEEEECCCCceEEE-EEEEccCCCceEEe
Confidence 3456678999999999999999999876 44432 3667776 6887765 44443 3344556
Q ss_pred ccChHHHHhhcCCCCCCEEEEEE
Q 019261 171 TKGWSRYVKEKRLDAGDVILFER 193 (343)
Q Consensus 171 T~GWs~FVkdK~LkaGD~VvF~r 193 (343)
.+ .-++..++||.|+++-
T Consensus 89 NG-----AAArl~~~GD~VII~s 106 (143)
T 1pqh_A 89 NG-----AAAHCASVGDIVIIAS 106 (143)
T ss_dssp CG-----GGGGTCCTTCEEEEEE
T ss_pred ch-----HHHccCCCCCEEEEEE
Confidence 44 5677889999999854
No 9
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=48.42 E-value=1.2e+02 Score=25.35 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=53.4
Q ss_pred cceEEEecccCCCCCCCcEEeehhhHhh--cCCCCCCCCCCCCCCCCCceEEEEEcC-CCCeEEEEEEEec--CCCceEE
Q 019261 96 EPMFEKPLTPSDVGKLNRLVIPKQHAEK--YFPLGGGGADLGSSSSDKGLLLSFEDE-SGKCWRFRYSYWN--SSQSYVL 170 (343)
Q Consensus 96 ~~lF~K~LT~SDVs~~gRLvIPK~~AE~--~fP~l~~s~d~~~~~~~~gi~L~v~D~-~Gk~W~FR~sywn--ssrryvL 170 (343)
..+-..+.|..|+...|.+.|-.+..+. ++|.. .+.+.|. +|..|.- |.+.+ .|+.-.|
T Consensus 11 sKIHratVT~a~L~Y~GSitID~~Ll~aA~i~~~E---------------~V~I~NvnNG~Rf~T-YvI~GerGSg~I~l 74 (114)
T 3oug_A 11 SKISYATVTGKDLFYVGSITIDSEIMKQANIIENE---------------KVQVVNLNNGERLET-YVIKGEPNSKTIAL 74 (114)
T ss_dssp EEEEEEECCEEESSCC-CEEEEHHHHHHTTCCTTB---------------EEEEEETTTCCEEEE-EEEEECTTSCCEEE
T ss_pred hhhcceEEecccccccceEEECHHHHHHcCCCcCC---------------EEEEEECCCCceEEE-EEEEccCCCCEEEe
Confidence 3456678999999999999999999876 33332 4667776 6887765 44442 3344666
Q ss_pred ccChHHHHhhcCCCCCCEEEEEE
Q 019261 171 TKGWSRYVKEKRLDAGDVILFER 193 (343)
Q Consensus 171 T~GWs~FVkdK~LkaGD~VvF~r 193 (343)
.+ .-++..++||.|++.-
T Consensus 75 NG-----AAAr~~~~GD~vII~a 92 (114)
T 3oug_A 75 NG-----PAARRCEIGDQLFIIS 92 (114)
T ss_dssp EG-----GGGGGCCTTCEEEEEE
T ss_pred CC-----HHHhccCCCCEEEEEE
Confidence 55 5677789999999863
No 10
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=47.21 E-value=1.3e+02 Score=25.96 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=55.5
Q ss_pred ccceEEEecccCCCCCCCcEEeehhhHhh--cCCCCCCCCCCCCCCCCCceEEEEEcC-CCCeEEEEEEEec--CCCceE
Q 019261 95 KEPMFEKPLTPSDVGKLNRLVIPKQHAEK--YFPLGGGGADLGSSSSDKGLLLSFEDE-SGKCWRFRYSYWN--SSQSYV 169 (343)
Q Consensus 95 k~~lF~K~LT~SDVs~~gRLvIPK~~AE~--~fP~l~~s~d~~~~~~~~gi~L~v~D~-~Gk~W~FR~sywn--ssrryv 169 (343)
+..+-..+.|..|+...|.+.|-.+..+. ++|-. .+.+.|. +|..|.- |.+.+ .|+.-.
T Consensus 7 ksKIHRatVT~AdL~Y~GSITID~dLldaAgIl~~E---------------kV~IvNvnNG~RfeT-YvI~GerGSG~I~ 70 (139)
T 2c45_A 7 KSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGE---------------QVTIVDIDNGARLVT-YAITGERGSGVIG 70 (139)
T ss_dssp CEEEEEEECCCEESSSCCEEEEEHHHHHHTTCCSSC---------------CEEEEETTTCCEEEE-CEEEECTTTTCEE
T ss_pred hhcccceEEeccccccceeeEECHHHHHHcCCCCCC---------------EEEEEECCCCceEEE-EEEEccCCCCEEE
Confidence 44577789999999999999999999876 34432 3567776 6887664 44442 344566
Q ss_pred EccChHHHHhhcCCCCCCEEEEEE
Q 019261 170 LTKGWSRYVKEKRLDAGDVILFER 193 (343)
Q Consensus 170 LT~GWs~FVkdK~LkaGD~VvF~r 193 (343)
|.+ .-++..++||.|+++-
T Consensus 71 lNG-----AAArl~~~GD~vII~a 89 (139)
T 2c45_A 71 ING-----AAAHLVHPGDLVILIA 89 (139)
T ss_dssp EES-----STTTTSCTTCEEEEEE
T ss_pred Ech-----HHHccCCCCCEEEEEE
Confidence 655 5677779999999864
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=45.31 E-value=33 Score=27.25 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEEeeC--CCCcEEEEEEEcC
Q 019261 143 LLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRT--DSERLFIGWRRRG 209 (343)
Q Consensus 143 i~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~~~--~~g~L~IgIRR~~ 209 (343)
..+.+-|..| .++++.|+.. |++||+|.+.-... -.|++.+.+-|..
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 3577889999 5888888653 89999999973211 1345655555443
No 12
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=40.99 E-value=78 Score=24.70 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEEee--C-CCCcEEEEEEE
Q 019261 142 GLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHR--T-DSERLFIGWRR 207 (343)
Q Consensus 142 gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~~--~-~~g~L~IgIRR 207 (343)
-..+.+.|..| ..++.+|+.. .| ....|++||+|.|.-.. . =+|++.+.+-+
T Consensus 44 ~~~~~l~D~TG---~I~~t~w~~~-------~~----~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~ 98 (115)
T 2k50_A 44 LANVIIADDTG---ELRAVFWTEN-------IK----LLKKFREGDVIRIKDVNIRGGFGGRKEAHLMP 98 (115)
T ss_dssp EEEEEEEETTE---EEEEEEETTG-------GG----GGGTCCTTSEEEEEEEEECCCSSSSCEEEECT
T ss_pred EEEEEEEeCCC---eEEEEEeCch-------hh----hhhcCCCCCEEEEEeeEEccccCCeEEEEECC
Confidence 35678899999 7888899652 12 12579999999997654 2 13445444443
No 13
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=39.58 E-value=40 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=19.8
Q ss_pred hcCCCCCCEEEEEEeeCCCCcEE-EEEEEc
Q 019261 180 EKRLDAGDVILFERHRTDSERLF-IGWRRR 208 (343)
Q Consensus 180 dK~LkaGD~VvF~r~~~~~g~L~-IgIRR~ 208 (343)
-..|++||.|.|.....+++.+. ..|+..
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 35799999999988775553444 445543
No 14
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=35.09 E-value=1.6e+02 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=17.6
Q ss_pred HHHHhhcCCCCCCEEEEEEee
Q 019261 175 SRYVKEKRLDAGDVILFERHR 195 (343)
Q Consensus 175 s~FVkdK~LkaGD~VvF~r~~ 195 (343)
.++.+.-+|++||.|.|....
T Consensus 66 keiR~~lgi~~Gd~l~~~~~~ 86 (92)
T 2glw_A 66 KALRDVIGIKPGEVIEVLLLG 86 (92)
T ss_dssp HHHHHHHTCCTTCEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEeC
Confidence 367788899999999998863
No 15
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=31.48 E-value=7 Score=33.52 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCceEEccChHHHH----------hhcCCCCCCEEEEEEe
Q 019261 165 SQSYVLTKGWSRYV----------KEKRLDAGDVILFERH 194 (343)
Q Consensus 165 srryvLT~GWs~FV----------kdK~LkaGD~VvF~r~ 194 (343)
-.-||..+||+-|- .-++|.+||+|+-.-.
T Consensus 88 hPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClslt~ 127 (133)
T 1oa8_A 88 YPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTL 127 (133)
T ss_dssp CCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEEEE
T ss_pred CCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEecch
Confidence 35677889997663 4468899999987544
No 16
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=31.40 E-value=48 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=26.1
Q ss_pred EecCCCceEEccChHHHHhhcCCCCCCEEEEEEeeCCCCcEEEE
Q 019261 161 YWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRTDSERLFIG 204 (343)
Q Consensus 161 ywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~~~~~g~L~Ig 204 (343)
.|+++..-.|- ..+++.-+|++||.|.|... ++++.|.
T Consensus 8 k~Gns~~v~iP---k~~~~~lgl~~gd~v~i~~~---~~~iii~ 45 (82)
T 1mvf_D 8 RWGNSPAVRIP---ATLMQALNLNIDDEVKIDLV---DGKLIIE 45 (82)
T ss_dssp EETTEEEEECC---HHHHHHTTCCTTCBEEEEEE---TTEEEEE
T ss_pred EECCccEEEEC---HHHHHHcCCCCCCEEEEEEE---CCEEEEE
Confidence 34444444443 47889999999999999875 3566553
No 17
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=31.15 E-value=72 Score=25.31 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEE--eeCCCCcEEEEEEEcC
Q 019261 142 GLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFER--HRTDSERLFIGWRRRG 209 (343)
Q Consensus 142 gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r--~~~~~g~L~IgIRR~~ 209 (343)
.+.+.+-|..|. .+++.|+.. ....|++||+|.+.- .+.-+|++.|.+-+..
T Consensus 36 ~~~~~l~DeTG~---I~~t~W~~~-------------~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~ 89 (109)
T 2kbn_A 36 SQVGLLGDETGI---IKFTIWKNA-------------ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNS 89 (109)
T ss_dssp EEEEEEECTTCC---EEEEEEGGG-------------CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSS
T ss_pred EEEEEEECCCCe---EEEEEECcc-------------cccccCCCCEEEEEEEEEEEECCEEEEEECCce
Confidence 345778899994 777787532 235789999999862 2112455666555443
No 18
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=30.56 E-value=65 Score=27.35 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCeEEEEEEE--e-------cCCCceEEc--cChHHHHhhcCCCCCCEEEE
Q 019261 142 GLLLSFEDESGKCWRFRYSY--W-------NSSQSYVLT--KGWSRYVKEKRLDAGDVILF 191 (343)
Q Consensus 142 gi~L~v~D~~Gk~W~FR~sy--w-------nssrryvLT--~GWs~FVkdK~LkaGD~VvF 191 (343)
.+.+.+.|.+|+.-.+.-.. | ..+-+|+|. .|| +.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 36778888888876664311 1 112468884 666 46889999999875
No 19
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=29.40 E-value=67 Score=23.38 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=18.0
Q ss_pred HHHHhhcCCCCCCEEEEEEee
Q 019261 175 SRYVKEKRLDAGDVILFERHR 195 (343)
Q Consensus 175 s~FVkdK~LkaGD~VvF~r~~ 195 (343)
.++.+.-+|++||.|.|....
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 477888999999999998863
No 20
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=29.38 E-value=60 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=23.9
Q ss_pred EEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEEe
Q 019261 144 LLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERH 194 (343)
Q Consensus 144 ~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~ 194 (343)
.+.+.|..| ..+++.| .+.+.. .|++||+|.| ..
T Consensus 41 ~~~l~DeTG---~I~~tlW------------~~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 41 SLFLKDDTG---SIRGTLW------------NELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEETTE---EEEEEEE------------GGGGGC-CCCTTCEEEE-EE
T ss_pred EEEEECCCC---cEEEEEE------------CCcccc-ccCCCCEEEE-EE
Confidence 567788888 4555555 444444 8999999999 53
No 21
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=28.10 E-value=74 Score=22.16 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHhhcCCCCCCEEEEEEee
Q 019261 175 SRYVKEKRLDAGDVILFERHR 195 (343)
Q Consensus 175 s~FVkdK~LkaGD~VvF~r~~ 195 (343)
..+.+.-+|+.||.|.|....
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 477888999999999998763
No 22
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=27.66 E-value=19 Score=28.50 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.5
Q ss_pred HhhcCCCCCCEEEEEEee
Q 019261 178 VKEKRLDAGDVILFERHR 195 (343)
Q Consensus 178 VkdK~LkaGD~VvF~r~~ 195 (343)
+..++.++||+|+|.-..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 677899999999998764
No 23
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=27.63 E-value=20 Score=29.46 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHhhcCCCCCCEEEEEEee
Q 019261 176 RYVKEKRLDAGDVILFERHR 195 (343)
Q Consensus 176 ~FVkdK~LkaGD~VvF~r~~ 195 (343)
.-+..++.++||+|+|.-..
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~ 42 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAA 42 (116)
T ss_dssp HHHTTCCEETTCEEEECCCT
T ss_pred hccccccCcCCCEEEEEecC
Confidence 44788999999999997664
No 24
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=23.74 E-value=2.5e+02 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=23.6
Q ss_pred EEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEEe
Q 019261 144 LLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERH 194 (343)
Q Consensus 144 ~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~ 194 (343)
.+.+.|..| .+++..|+ +.+.. .|++||+|.| ..
T Consensus 44 ~~~l~D~TG---~IrvtlW~------------~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 44 SFIVRDETG---SIRVTLWD------------NLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEETTE---EEEEEEEG------------GGGGS-CCCTTCEEEE-EE
T ss_pred EEEEECCCC---cEEEEEEC------------ccccc-ccCCCCEEEE-EE
Confidence 567778877 46666664 33333 8999999999 54
No 25
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=23.26 E-value=2e+02 Score=24.10 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCeEEEEEEE--e-------cCCCceEE--ccChHHHHhhcCCCCCCEEEEE
Q 019261 142 GLLLSFEDESGKCWRFRYSY--W-------NSSQSYVL--TKGWSRYVKEKRLDAGDVILFE 192 (343)
Q Consensus 142 gi~L~v~D~~Gk~W~FR~sy--w-------nssrryvL--T~GWs~FVkdK~LkaGD~VvF~ 192 (343)
.+.+.+.|.+|+.-.+.... | ..+-+|+| ..||. .+.++++||.|.+-
T Consensus 69 PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~~ 127 (136)
T 3pjy_A 69 PLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTV---KRLGVSPGDRLEGA 127 (136)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTHH---HHHTCCTTCEEEET
T ss_pred ceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcChH---HhcCCCCCCEEEEC
Confidence 36777888888876663222 1 12245887 46664 68899999999864
No 26
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.56 E-value=50 Score=28.72 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=18.8
Q ss_pred hcCCCCCCEEEEEEeeCCCCcEEEEE
Q 019261 180 EKRLDAGDVILFERHRTDSERLFIGW 205 (343)
Q Consensus 180 dK~LkaGD~VvF~r~~~~~g~L~IgI 205 (343)
-..|++||.|.|++.. +|+|++.|
T Consensus 115 l~~l~~Gd~ig~~~~~--~G~l~~~i 138 (170)
T 2e63_A 115 LDQLGEGDRVGVERTV--AGELRLWV 138 (170)
T ss_dssp GGGCCSSCCEEEEECT--TSCEEEEE
T ss_pred ccccCCCCEEEEEEcC--CcEEEEEE
Confidence 3467899999999985 56777765
No 27
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=21.71 E-value=86 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHhhcCCCCCCEEEEEEeeCCCCcE
Q 019261 175 SRYVKEKRLDAGDVILFERHRTDSERL 201 (343)
Q Consensus 175 s~FVkdK~LkaGD~VvF~r~~~~~g~L 201 (343)
-..++.-+|+.||+|-+.|.....|++
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~ 69 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEF 69 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCc
Confidence 467888999999999999987655543
No 28
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=20.95 E-value=1.7e+02 Score=23.18 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCeEEEEEEEecCCCceEEccChHHHHhhcCCCCCCEEEEEEeeC--CCCcEEEEEEEcC
Q 019261 142 GLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFERHRT--DSERLFIGWRRRG 209 (343)
Q Consensus 142 gi~L~v~D~~Gk~W~FR~sywnssrryvLT~GWs~FVkdK~LkaGD~VvF~r~~~--~~g~L~IgIRR~~ 209 (343)
-..+.+.|..|. .+++.|+. .+ ..|++||+|.+....- -+|++.+.+.+..
T Consensus 39 ~~~~~l~D~TG~---I~~tlW~~------------~~--~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~ 91 (119)
T 1o7i_A 39 ISEAIVGDETGR---VKLTLWGK------------HA--GSIKEGQVVKIENAWTTAFKGQVQLNAGSKT 91 (119)
T ss_dssp EEEEEEEETTEE---EEEEEEGG------------GT--TCCCTTCEEEEEEEEEEEETTEEEEEECTTC
T ss_pred EEEEEEEeCCCE---EEEEEECC------------hh--hcCCCCCEEEEEeEEEEEeCCEEEEEECCCE
Confidence 356778899884 77777743 22 2489999999873221 1345655555433
No 29
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=20.77 E-value=78 Score=28.38 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=27.5
Q ss_pred hHHHHhhcCCCCCCEEEEEEeeCCCCcEEEEEEEcCC
Q 019261 174 WSRYVKEKRLDAGDVILFERHRTDSERLFIGWRRRGA 210 (343)
Q Consensus 174 Ws~FVkdK~LkaGD~VvF~r~~~~~g~L~IgIRR~~~ 210 (343)
-..|.+++.|+.||+|.|.+..+ .|.|.|.+.....
T Consensus 129 f~~~F~~~~~~~G~~I~~~~~p~-~G~L~i~~s~~G~ 164 (208)
T 4dok_A 129 VVGFFQSKYFKANSVITYHFSAK-DGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHTCEECTTCEEEEEECSS-SCCEEEEEECTTS
T ss_pred HHHHhccCCCCCCCEEEEEEeCC-CCeEEEEEEeCCE
Confidence 34556778899999999999963 3678888875554
No 30
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.05 E-value=96 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.4
Q ss_pred HHHhhcCCCCCCEEEEEEeeCCCCc
Q 019261 176 RYVKEKRLDAGDVILFERHRTDSER 200 (343)
Q Consensus 176 ~FVkdK~LkaGD~VvF~r~~~~~g~ 200 (343)
..++..+|+.||+|-+.|.....|+
T Consensus 50 Pva~~~g~k~GdVvkI~R~S~tag~ 74 (84)
T 4ayb_H 50 PVARSINAKPGDIIRIIRKSQLYGE 74 (84)
T ss_dssp HHHHHHTCCTTCEEEEEEEETTTEE
T ss_pred HhHHhhCCCCCCEEEEEEcCCCCCc
Confidence 5678889999999999998655554
Done!