Query 019264
Match_columns 343
No_of_seqs 153 out of 1307
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 2E-37 4.4E-42 279.4 30.3 285 11-304 2-296 (302)
2 PTZ00343 triose or hexose phos 100.0 3.5E-36 7.6E-41 275.2 33.5 288 9-302 47-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 2.1E-37 4.5E-42 272.5 18.3 298 5-306 11-312 (316)
4 PLN00411 nodulin MtN21 family 100.0 1.2E-30 2.6E-35 237.8 33.2 292 6-306 8-333 (358)
5 KOG1443 Predicted integral mem 100.0 4.2E-30 9.1E-35 217.9 21.7 288 8-300 13-314 (349)
6 KOG1444 Nucleotide-sugar trans 100.0 4.8E-29 1E-33 214.6 25.2 295 7-308 8-307 (314)
7 PRK11272 putative DMT superfam 100.0 1.5E-27 3.3E-32 213.9 33.3 264 24-303 21-287 (292)
8 PRK11689 aromatic amino acid e 100.0 2.2E-27 4.9E-32 213.0 30.4 272 6-303 3-289 (295)
9 PF08449 UAA: UAA transporter 100.0 8E-27 1.7E-31 210.1 31.0 272 27-306 16-302 (303)
10 PRK11453 O-acetylserine/cystei 100.0 2.7E-26 5.8E-31 206.5 31.8 275 8-303 5-289 (299)
11 PRK10532 threonine and homoser 100.0 3.7E-26 7.9E-31 205.0 31.1 268 8-303 13-283 (293)
12 PRK15430 putative chlorampheni 100.0 6.7E-26 1.4E-30 203.6 30.9 278 6-304 7-288 (296)
13 TIGR00950 2A78 Carboxylate/Ami 100.0 8E-26 1.7E-30 199.8 28.1 253 28-296 6-259 (260)
14 PF06027 DUF914: Eukaryotic pr 99.9 2E-25 4.4E-30 199.3 26.8 260 40-305 39-309 (334)
15 KOG1442 GDP-fucose transporter 99.9 7.1E-27 1.5E-31 195.1 4.4 303 8-314 25-340 (347)
16 TIGR03340 phn_DUF6 phosphonate 99.9 4.5E-22 9.7E-27 177.6 25.1 274 12-298 6-280 (281)
17 TIGR00688 rarD rarD protein. T 99.9 8.5E-22 1.8E-26 173.5 26.3 248 8-275 3-255 (256)
18 COG5070 VRG4 Nucleotide-sugar 99.9 3.8E-22 8.2E-27 162.1 19.1 285 13-308 8-303 (309)
19 KOG1580 UDP-galactose transpor 99.9 4E-22 8.6E-27 163.3 14.2 255 40-301 49-313 (337)
20 COG0697 RhaT Permeases of the 99.9 2.1E-19 4.5E-24 161.0 32.8 260 27-302 23-288 (292)
21 KOG1581 UDP-galactose transpor 99.9 9E-19 1.9E-23 149.4 25.7 259 40-305 47-317 (327)
22 COG5006 rhtA Threonine/homoser 99.8 1.1E-18 2.4E-23 144.9 23.8 251 29-303 30-284 (292)
23 KOG1582 UDP-galactose transpor 99.8 7.9E-19 1.7E-23 146.9 17.0 275 19-303 51-334 (367)
24 COG2962 RarD Predicted permeas 99.8 1.6E-16 3.5E-21 135.6 29.5 287 1-309 1-291 (293)
25 TIGR00776 RhaT RhaT L-rhamnose 99.8 7.2E-17 1.6E-21 144.2 26.8 264 10-301 4-288 (290)
26 KOG2765 Predicted membrane pro 99.8 7.2E-18 1.6E-22 147.6 19.4 223 80-304 159-393 (416)
27 KOG3912 Predicted integral mem 99.8 3.8E-17 8.2E-22 137.5 22.0 284 14-303 6-336 (372)
28 KOG2234 Predicted UDP-galactos 99.8 1.1E-15 2.5E-20 134.1 30.9 286 11-305 15-326 (345)
29 PF04142 Nuc_sug_transp: Nucle 99.7 8.8E-16 1.9E-20 132.9 21.1 208 76-291 14-243 (244)
30 PF03151 TPT: Triose-phosphate 99.7 4.8E-16 1E-20 126.0 14.8 140 161-301 1-153 (153)
31 KOG1583 UDP-N-acetylglucosamin 99.7 1.9E-16 4.2E-21 133.2 12.1 252 44-303 33-316 (330)
32 KOG4510 Permease of the drug/m 99.7 1.9E-17 4.2E-22 138.4 1.3 266 20-303 47-327 (346)
33 KOG2766 Predicted membrane pro 99.6 1.5E-16 3.2E-21 132.3 3.7 248 40-301 44-299 (336)
34 PF00892 EamA: EamA-like trans 99.3 8.7E-12 1.9E-16 97.0 9.9 118 27-151 7-125 (126)
35 COG2510 Predicted membrane pro 99.2 1.1E-10 2.4E-15 87.4 10.6 130 13-152 9-139 (140)
36 TIGR00803 nst UDP-galactose tr 99.2 1E-10 2.2E-15 100.7 12.0 190 104-299 2-222 (222)
37 COG2510 Predicted membrane pro 99.2 4.7E-11 1E-15 89.3 8.3 135 161-300 4-138 (140)
38 PF00892 EamA: EamA-like trans 99.2 3E-10 6.5E-15 88.3 9.9 125 170-300 1-125 (126)
39 PF13536 EmrE: Multidrug resis 99.1 3.6E-10 7.7E-15 86.4 9.2 106 49-156 2-110 (113)
40 KOG4314 Predicted carbohydrate 99.1 4.2E-10 9.2E-15 90.6 8.4 222 75-303 48-278 (290)
41 PF06800 Sugar_transport: Suga 99.0 1.1E-07 2.4E-12 82.3 21.4 207 80-298 45-268 (269)
42 TIGR00950 2A78 Carboxylate/Ami 98.9 1.6E-07 3.4E-12 82.8 16.5 128 10-147 131-259 (260)
43 PRK15430 putative chlorampheni 98.8 1.2E-07 2.6E-12 85.3 15.6 138 156-300 4-144 (296)
44 TIGR00688 rarD rarD protein. T 98.8 1.6E-07 3.4E-12 82.7 15.1 134 160-299 2-140 (256)
45 TIGR03340 phn_DUF6 phosphonate 98.8 1.3E-07 2.8E-12 84.5 14.1 131 162-300 3-134 (281)
46 PLN00411 nodulin MtN21 family 98.6 1.7E-06 3.6E-11 79.5 15.2 137 160-301 13-156 (358)
47 PRK15051 4-amino-4-deoxy-L-ara 98.5 3.2E-06 6.8E-11 64.1 11.3 64 88-151 45-108 (111)
48 PRK10532 threonine and homoser 98.5 9.7E-06 2.1E-10 72.8 16.5 121 22-151 159-280 (293)
49 PRK11272 putative DMT superfam 98.5 7.7E-06 1.7E-10 73.5 15.8 108 44-152 177-285 (292)
50 PRK11689 aromatic amino acid e 98.3 2.9E-05 6.4E-10 69.8 16.0 78 74-152 210-287 (295)
51 PTZ00343 triose or hexose phos 98.3 3.3E-05 7.2E-10 71.1 16.3 135 159-300 48-185 (350)
52 PF05653 Mg_trans_NIPA: Magnes 98.3 9.3E-06 2E-10 72.7 11.9 68 85-152 55-122 (300)
53 PF03151 TPT: Triose-phosphate 98.3 5.7E-05 1.2E-09 60.8 15.6 134 16-150 5-151 (153)
54 TIGR00817 tpt Tpt phosphate/ph 98.3 1.3E-05 2.8E-10 72.4 12.0 138 12-152 146-293 (302)
55 PRK11453 O-acetylserine/cystei 98.2 8.6E-05 1.9E-09 66.9 16.7 126 25-153 157-288 (299)
56 PRK13499 rhamnose-proton sympo 98.2 0.0025 5.3E-08 57.9 25.2 217 80-301 73-341 (345)
57 PRK02971 4-amino-4-deoxy-L-ara 98.1 9.9E-05 2.1E-09 57.4 12.4 120 160-302 2-123 (129)
58 COG4975 GlcU Putative glucose 98.0 3.1E-06 6.7E-11 71.1 2.2 216 73-301 53-285 (288)
59 COG2962 RarD Predicted permeas 97.9 0.00036 7.9E-09 60.6 13.7 138 158-301 5-144 (293)
60 PF13536 EmrE: Multidrug resis 97.9 0.00021 4.5E-09 54.4 11.0 64 238-303 45-108 (113)
61 PRK02971 4-amino-4-deoxy-L-ara 97.9 8.1E-05 1.8E-09 57.8 8.6 72 82-153 50-123 (129)
62 KOG2922 Uncharacterized conser 97.9 0.00011 2.4E-09 64.5 9.7 71 83-153 67-137 (335)
63 PF08449 UAA: UAA transporter 97.8 0.0005 1.1E-08 62.1 13.5 129 172-305 12-140 (303)
64 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.0014 3.1E-08 49.5 12.9 56 244-300 53-108 (111)
65 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.00049 1.1E-08 61.7 12.0 71 81-151 212-287 (290)
66 PF04657 DUF606: Protein of un 97.7 0.002 4.2E-08 50.8 13.6 132 162-298 3-138 (138)
67 PF06027 DUF914: Eukaryotic pr 97.7 0.0013 2.8E-08 59.6 13.7 141 160-303 13-153 (334)
68 COG0697 RhaT Permeases of the 97.7 0.0024 5.2E-08 56.8 15.6 139 159-303 6-145 (292)
69 PRK10452 multidrug efflux syst 97.6 0.001 2.3E-08 50.7 10.8 71 83-153 33-104 (120)
70 PRK09541 emrE multidrug efflux 97.5 0.0025 5.3E-08 48.0 10.7 69 85-153 35-104 (110)
71 PRK11431 multidrug efflux syst 97.4 0.003 6.5E-08 47.1 10.7 69 84-152 33-102 (105)
72 COG2076 EmrE Membrane transpor 97.4 0.0022 4.9E-08 47.3 9.5 70 83-152 33-103 (106)
73 PRK10650 multidrug efflux syst 97.3 0.0097 2.1E-07 44.6 12.0 67 84-150 39-106 (109)
74 COG5006 rhtA Threonine/homoser 97.1 0.02 4.2E-07 49.0 13.5 131 10-148 147-278 (292)
75 COG3238 Uncharacterized protei 97.1 0.028 6.2E-07 44.4 13.1 138 159-300 4-145 (150)
76 PRK10452 multidrug efflux syst 97.0 0.0099 2.2E-07 45.4 9.6 55 248-303 50-105 (120)
77 PF07857 DUF1632: CEO family ( 97.0 0.0026 5.7E-08 55.2 7.3 132 161-305 1-138 (254)
78 PF04657 DUF606: Protein of un 97.0 0.052 1.1E-06 42.8 13.9 126 18-149 8-138 (138)
79 KOG1441 Glucose-6-phosphate/ph 96.9 0.0028 6E-08 56.9 7.2 143 8-151 160-306 (316)
80 PF00893 Multi_Drug_Res: Small 96.9 0.012 2.6E-07 43.0 8.9 58 86-143 35-93 (93)
81 PRK13499 rhamnose-proton sympo 96.9 0.017 3.7E-07 52.5 11.7 141 158-304 5-156 (345)
82 PF06800 Sugar_transport: Suga 96.8 0.046 1E-06 47.8 13.4 68 81-148 196-267 (269)
83 PRK10650 multidrug efflux syst 96.8 0.035 7.6E-07 41.6 11.0 52 248-300 55-107 (109)
84 PF04142 Nuc_sug_transp: Nucle 96.8 0.0057 1.2E-07 53.2 7.7 75 229-304 18-92 (244)
85 KOG4510 Permease of the drug/m 96.5 0.00037 8E-09 59.6 -1.7 135 160-304 38-172 (346)
86 TIGR00803 nst UDP-galactose tr 96.3 0.072 1.6E-06 45.6 11.7 67 83-149 155-221 (222)
87 PF05653 Mg_trans_NIPA: Magnes 96.2 0.045 9.8E-07 49.2 10.1 117 158-300 5-121 (300)
88 COG2076 EmrE Membrane transpor 96.2 0.098 2.1E-06 38.7 9.8 53 249-302 51-104 (106)
89 KOG2234 Predicted UDP-galactos 96.1 0.25 5.3E-06 44.6 14.1 136 164-300 19-163 (345)
90 PF10639 UPF0546: Uncharacteri 96.1 0.016 3.5E-07 43.5 5.7 64 87-150 48-112 (113)
91 PRK09541 emrE multidrug efflux 96.0 0.056 1.2E-06 40.7 8.3 53 249-302 51-104 (110)
92 PRK11431 multidrug efflux syst 95.9 0.088 1.9E-06 39.2 8.6 52 249-301 50-102 (105)
93 COG3238 Uncharacterized protei 94.9 1.6 3.4E-05 34.7 13.2 133 13-150 7-144 (150)
94 PF00893 Multi_Drug_Res: Small 94.4 0.35 7.6E-06 35.2 8.0 47 245-292 46-93 (93)
95 KOG1580 UDP-galactose transpor 94.4 0.19 4.2E-06 42.5 7.2 130 169-304 22-160 (337)
96 KOG2765 Predicted membrane pro 94.3 0.52 1.1E-05 42.8 10.2 142 9-155 249-393 (416)
97 KOG1581 UDP-galactose transpor 92.9 2.1 4.6E-05 37.9 11.3 138 8-149 169-310 (327)
98 PF06379 RhaT: L-rhamnose-prot 92.1 7.4 0.00016 35.3 13.9 140 159-305 6-157 (344)
99 KOG1444 Nucleotide-sugar trans 91.8 1.7 3.6E-05 38.8 9.4 136 12-150 158-298 (314)
100 COG5070 VRG4 Nucleotide-sugar 91.7 2.7 5.8E-05 35.6 10.0 122 20-145 164-289 (309)
101 PF10639 UPF0546: Uncharacteri 89.0 0.81 1.8E-05 34.5 4.5 53 245-298 58-111 (113)
102 COG4975 GlcU Putative glucose 85.8 0.51 1.1E-05 40.4 1.9 71 80-150 209-283 (288)
103 KOG4314 Predicted carbohydrate 85.7 0.51 1.1E-05 38.9 1.8 61 240-301 65-125 (290)
104 PF07168 Ureide_permease: Urei 85.3 1.6 3.5E-05 38.6 4.8 69 228-299 72-144 (336)
105 PF05297 Herpes_LMP1: Herpesvi 75.1 0.94 2E-05 39.5 0.0 69 102-170 45-117 (381)
106 KOG3912 Predicted integral mem 72.6 48 0.001 29.4 9.7 65 234-299 92-156 (372)
107 KOG2922 Uncharacterized conser 71.4 0.91 2E-05 40.5 -0.9 120 157-302 18-137 (335)
108 PF10225 DUF2215: Uncharacteri 71.3 70 0.0015 27.9 11.1 32 247-278 114-145 (249)
109 KOG1583 UDP-N-acetylglucosamin 71.0 20 0.00044 31.6 7.1 139 7-151 160-313 (330)
110 PF02694 UPF0060: Uncharacteri 68.2 11 0.00023 28.0 4.1 40 114-153 65-104 (107)
111 PRK02237 hypothetical protein; 66.1 13 0.00028 27.6 4.2 40 114-153 67-106 (109)
112 KOG1442 GDP-fucose transporter 64.0 13 0.00029 32.6 4.6 103 44-146 215-321 (347)
113 PRK06638 NADH:ubiquinone oxido 63.4 89 0.0019 26.2 12.0 47 160-213 30-77 (198)
114 KOG4831 Unnamed protein [Funct 63.4 11 0.00023 27.8 3.3 64 87-150 59-123 (125)
115 PF05977 MFS_3: Transmembrane 62.5 1.6E+02 0.0035 28.9 15.5 27 249-275 341-367 (524)
116 PF05961 Chordopox_A13L: Chord 58.4 13 0.00029 24.8 2.8 23 283-305 4-26 (68)
117 COG1742 Uncharacterized conser 57.9 17 0.00037 26.7 3.6 39 115-153 67-105 (109)
118 KOG1443 Predicted integral mem 57.0 1.5E+02 0.0033 26.8 11.4 50 101-150 264-313 (349)
119 COG3086 RseC Positive regulato 54.8 31 0.00067 27.1 4.8 27 250-276 70-96 (150)
120 PF04342 DUF486: Protein of un 54.6 86 0.0019 23.3 9.8 61 90-150 45-106 (108)
121 PRK02237 hypothetical protein; 53.6 24 0.00052 26.2 3.8 44 257-301 62-105 (109)
122 PF02694 UPF0060: Uncharacteri 51.7 24 0.00052 26.2 3.5 43 258-301 61-103 (107)
123 TIGR02865 spore_II_E stage II 51.1 3E+02 0.0066 28.5 15.8 44 107-150 11-54 (764)
124 TIGR01167 LPXTG_anchor LPXTG-m 50.9 18 0.00039 20.3 2.4 22 277-298 6-27 (34)
125 PF06123 CreD: Inner membrane 50.7 2.3E+02 0.005 27.0 12.7 59 126-186 317-377 (430)
126 PF04342 DUF486: Protein of un 48.4 18 0.00039 26.7 2.5 29 269-298 77-105 (108)
127 PHA03049 IMV membrane protein; 43.5 37 0.0008 22.7 3.1 23 283-305 4-26 (68)
128 PRK02463 OxaA-like protein pre 43.2 1.7E+02 0.0037 26.4 8.5 40 259-300 209-248 (307)
129 PF07444 Ycf66_N: Ycf66 protei 42.8 32 0.0007 24.4 3.0 23 281-303 5-27 (84)
130 COG4657 RnfA Predicted NADH:ub 38.9 1.4E+02 0.0031 24.1 6.3 56 127-182 92-154 (193)
131 KOG1582 UDP-galactose transpor 38.6 2.1E+02 0.0047 25.4 7.9 53 105-157 285-337 (367)
132 PF08627 CRT-like: CRT-like; 38.5 84 0.0018 24.1 4.8 42 6-50 52-93 (130)
133 PRK11715 inner membrane protei 38.4 3.6E+02 0.0079 25.8 12.4 58 127-186 324-383 (436)
134 KOG1623 Multitransmembrane pro 38.4 1E+02 0.0023 26.7 6.0 33 157-189 125-157 (243)
135 COG3169 Uncharacterized protei 37.4 74 0.0016 23.2 4.1 29 269-298 84-112 (116)
136 KOG4812 Golgi-associated prote 37.0 2.1E+02 0.0046 24.7 7.4 69 231-299 163-237 (262)
137 PF01102 Glycophorin_A: Glycop 35.7 42 0.0009 25.7 2.9 10 281-290 61-70 (122)
138 TIGR02840 spore_YtaF putative 34.2 59 0.0013 27.4 3.9 47 251-298 30-78 (206)
139 COG2323 Predicted membrane pro 34.2 3E+02 0.0065 23.6 9.0 79 45-129 4-82 (224)
140 PF04246 RseC_MucC: Positive r 33.9 95 0.002 24.0 4.8 41 255-297 68-108 (135)
141 PRK10666 ammonium transporter; 32.0 4.6E+02 0.0099 25.0 17.1 53 127-181 273-326 (428)
142 PF08507 COPI_assoc: COPI asso 31.2 96 0.0021 24.1 4.4 28 270-299 76-103 (136)
143 KOG2766 Predicted membrane pro 30.8 83 0.0018 27.6 4.1 132 9-152 168-299 (336)
144 PRK01637 hypothetical protein; 30.3 2.6E+02 0.0056 24.8 7.6 22 281-302 246-267 (286)
145 PF11044 TMEMspv1-c74-12: Plec 30.3 40 0.00087 20.5 1.6 18 281-298 2-19 (49)
146 PF05545 FixQ: Cbb3-type cytoc 28.1 83 0.0018 19.5 2.9 19 287-305 16-34 (49)
147 PF05977 MFS_3: Transmembrane 28.0 5.9E+02 0.013 25.0 14.0 83 103-185 250-334 (524)
148 PF13980 UPF0370: Uncharacteri 27.2 1.6E+02 0.0035 19.2 4.0 19 286-305 9-27 (63)
149 PF01102 Glycophorin_A: Glycop 25.8 71 0.0015 24.5 2.7 16 286-302 74-89 (122)
150 PRK15432 autoinducer 2 ABC tra 25.6 2.5E+02 0.0054 25.8 6.7 24 282-305 287-310 (344)
151 COG3169 Uncharacterized protei 25.1 2.8E+02 0.0061 20.3 11.0 31 121-151 84-114 (116)
152 PRK13108 prolipoprotein diacyl 24.6 1.5E+02 0.0032 28.6 5.1 23 281-303 254-276 (460)
153 COG1971 Predicted membrane pro 24.3 1.2E+02 0.0026 25.2 3.9 44 254-298 40-84 (190)
154 cd01324 cbb3_Oxidase_CcoQ Cyto 24.2 94 0.002 19.4 2.6 22 287-308 17-38 (48)
155 COG2917 Intracellular septatio 23.7 4.1E+02 0.0089 21.8 8.3 55 118-173 34-91 (180)
156 PF04277 OAD_gamma: Oxaloaceta 23.7 2.3E+02 0.005 19.4 4.9 14 285-298 8-21 (79)
157 PF11023 DUF2614: Protein of u 23.2 1.1E+02 0.0023 23.0 3.1 49 130-178 6-63 (114)
158 PF06570 DUF1129: Protein of u 22.8 4.6E+02 0.0099 21.9 11.2 24 161-184 112-135 (206)
159 COG4736 CcoQ Cbb3-type cytochr 22.4 82 0.0018 20.8 2.1 20 287-306 16-35 (60)
160 PRK12437 prolipoprotein diacyl 22.3 88 0.0019 27.6 3.0 21 281-301 235-255 (269)
161 PRK10862 SoxR reducing system 21.5 2.1E+02 0.0046 22.9 4.8 11 262-272 82-92 (154)
162 PF11700 ATG22: Vacuole efflux 20.8 7.7E+02 0.017 23.8 14.7 30 154-183 122-151 (477)
163 PF09656 PGPGW: Putative trans 20.7 2.4E+02 0.0053 18.0 5.2 45 136-185 5-49 (53)
164 COG3086 RseC Positive regulato 20.6 2E+02 0.0042 22.8 4.2 23 105-127 73-95 (150)
165 PRK10599 calcium/sodium:proton 20.3 7.1E+02 0.015 23.2 16.4 64 182-245 64-127 (366)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=2e-37 Score=279.43 Aligned_cols=285 Identities=20% Similarity=0.331 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHH
Q 019264 11 LTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFF 90 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
+..+.+.+|++.|++.++.||++++ ++++|..+++.|+.++.+.+.+... .+.+++++.++++ ++.+++.|+++
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~----~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~ 75 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN----VFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSAL-LKLLLPVAIVH 75 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHH-HHHHHHHHHHH
Confidence 3567899999999999999999999 7888999999999988776655422 2333445566666 78889999999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHHHHHHHHH
Q 019264 91 ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIV 170 (343)
Q Consensus 91 ~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~~l~s~~ 170 (343)
+....+.|.|++|+++++++++++++|+++++++++++|||++++++.++.++++|+.+...++.+.+..|+++++++++
T Consensus 76 ~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~ 155 (302)
T TIGR00817 76 TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNI 155 (302)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998877777777889999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhcc-------ch-hhHHH-HHHHHH-HHHH
Q 019264 171 AEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQ-------IQ-FNFWI-FFSNAL-CALA 240 (343)
Q Consensus 171 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~-~~~~l-~~~~~~-~~~~ 240 (343)
++++|+++.||..++ .++|+.+.+.|++..+.+.++|.....|++...... .. ...+. .+..+. +...
T Consensus 156 ~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (302)
T TIGR00817 156 TFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF 233 (302)
T ss_pred HHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 999999999998653 247889999999999999888887766653321110 01 11222 323333 3444
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 241 ~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
.+..++.+++++||+++++.++++|++++++|++++||+ +|..+++|.++++.|+++|++.|.
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~-lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK-ISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC-CchhHHHHHHHHHHHHHHHHHHhc
Confidence 556777899999999999999999999999999999887 999999999999999999987653
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=3.5e-36 Score=275.22 Aligned_cols=288 Identities=18% Similarity=0.256 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccC-hhhhhHHhhhHH
Q 019264 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMT-FEIYATCVVPIS 87 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (343)
.+.....+++|+..|+..++.||++++ .+|+|++++.+|++++.+++.+++. .+.+++++.+ +++.++.+++.|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN----MLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHH
Confidence 678889999999999999999999999 7899999999999999877655543 3333333343 444578899999
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHHHHHH
Q 019264 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVT 167 (343)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~~l~ 167 (343)
+++...+...+.|+++++++.++++++++|+++++++++++|||++++++.+++++++|+.+.+.+|.+++..|++++++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHH
Confidence 99888777788999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHHHHhhhCC---CCCChHHHHHhhhHHHHHHHHHHHHhhccCchhh---------cc--chhhHHHHHH
Q 019264 168 GIVAEALRLVLTQVLLQKKG---LTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV---------SQ--IQFNFWIFFS 233 (343)
Q Consensus 168 s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~--~~~~~~l~~~ 233 (343)
|++++|+|+++.|+.+++++ .++++.+...+..+.+.++++|.....|.+.... .. +....+.++.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 99999999999999887642 1367777778888999998888877666532110 01 1122334566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
+++..+.++.+.|.++++++|.++++.+++||++++++|++++||+ +|+.+++|.++++.|+++|++.
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~-lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC-CchHhHHHHHHHHHHHHHHhhc
Confidence 7777888888899999999999999999999999999999999887 9999999999999999999865
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=272.51 Aligned_cols=298 Identities=36% Similarity=0.566 Sum_probs=264.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhh
Q 019264 5 INKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVV 84 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
+.++.+.....+..|++.+++.+..||++++ .++|++|.+++..|++.+.+.... .+..+..++++.+.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~--~~~f~~p~~lt~~~~~~~~l~~~v-~~~l~~~~~~~~~~~~~~~~ll 87 (316)
T KOG1441|consen 11 QLKKILRIGIAFAIWYVLSVGVIILNKYILS--KYGFPFPITLTMLHLFCGALALLV-IKVLKLVPPSKISSKLPLRTLL 87 (316)
T ss_pred ccchhHHHHHHHHHHhhhheeeEEeeHhhhc--cCCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCCccccccchHHHH
Confidence 4566788888999999999999999999999 689999999999988877665544 4556666666665666689999
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHHH
Q 019264 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLY 164 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~ 164 (343)
+.++.+..+..+.|.|+.++|+++++++|+++|+++.++++++.+|+.++..++++..++.|+.+....|.++|..|++.
T Consensus 88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~ 167 (316)
T KOG1441|consen 88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFIS 167 (316)
T ss_pred HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHH-HHHHhhccCch---hhccchhhHHHHHHHHHHHHH
Q 019264 165 QVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLF-VPWYLLEKPMM---EVSQIQFNFWIFFSNALCALA 240 (343)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 240 (343)
++++.+..++++++.++.++++++++|++++++|+++.+.+.++ |.....|++.. ....|....+..++.+++++.
T Consensus 168 a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~ 247 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFL 247 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHH
Confidence 99999999999999999998777889999999999999999999 55555555444 333455555555556699999
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 019264 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKD 306 (343)
Q Consensus 241 ~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~ 306 (343)
+|.+.|++++++||+|.++.+.+|.++.++.|+++|++ +.|+.+..|+++.+.|+.+|++.+.++
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~-pvt~~n~~G~~iai~Gv~~Y~~~k~~~ 312 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGN-PVTFLNALGYAIAILGVFLYSRAKLKE 312 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecC-CCchhhHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999988 599999999999999999999887654
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.2e-30 Score=237.83 Aligned_cols=292 Identities=10% Similarity=0.093 Sum_probs=221.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-cCCCccChhhhhHHhh
Q 019264 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKV-VSPVKMTFEIYATCVV 84 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (343)
+++.......++.--+...++..+.|..+++ +.+ |..+.++|+.+++++++++...+++ ++.++.++++ +..+.
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~---G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~-~~~l~ 82 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSK---GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI-LSKIG 82 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHC---CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 4555566677777778888888899999974 677 8999999999999888877654432 2223344555 45555
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHh------cccccchhhHHHHHHHHhhhhheeec-cc--
Q 019264 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLC------GTDKARLDVFLNMVLVSVGVVISSYG-EI-- 155 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~------~~ek~s~~~~~~~~~~~~G~~l~~~~-~~-- 155 (343)
..+++....+.+.+.|++|+|++.++++.+++|++++++++++ +|||+++.+++|+.++++|+.++... +.
T Consensus 83 l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 83 LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccc
Confidence 6666555566789999999999999999999999999999999 69999999999999999999875531 10
Q ss_pred ---------------------eeh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHh
Q 019264 156 ---------------------HFN-IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYL 213 (343)
Q Consensus 156 ---------------------~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (343)
+.+ ..|+++.++|+++||+|+++.|+..++.+ +.....+++..++.+.+.++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~ 239 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLV 239 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHH
Confidence 112 45999999999999999999999876621 33355566666666666555555
Q ss_pred hccCchh--hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHH
Q 019264 214 LEKPMME--VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAI 291 (343)
Q Consensus 214 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~l 291 (343)
.|..+.. ...++...+.++..++.....+..+++++++.+|.+++++.+++|++++++|++++||+ +++.+++|.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~-lt~~~~iG~~L 318 (358)
T PLN00411 240 VEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS-LYLGCLIGGIL 318 (358)
T ss_pred HccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC-CcHHHHHHHHH
Confidence 5532211 11122223334444444555666788899999999999999999999999999999887 99999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 019264 292 ALCGVVMYNYIKVKD 306 (343)
Q Consensus 292 il~g~~~~~~~~~~~ 306 (343)
++.|+++.++.++++
T Consensus 319 Il~Gv~l~~~~~~~~ 333 (358)
T PLN00411 319 ITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999987655443
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.97 E-value=4.2e-30 Score=217.85 Aligned_cols=288 Identities=25% Similarity=0.434 Sum_probs=254.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCC---CccChhhhhHHhh
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP---VKMTFEIYATCVV 84 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 84 (343)
++++.+..++.|++.|++.++.+|+.-. +|++|++++.+|.++-.++.....+..++.++ .+.+|+++.+++.
T Consensus 13 ~rV~~L~lVl~yY~~Si~Ltf~~~~~~~----~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~a 88 (349)
T KOG1443|consen 13 NRVLTLALVLLYYFLSIGLTFYFKWLTK----NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLA 88 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc----CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhh
Confidence 4567777889999999999888888777 89999999999999877766655555544433 3678999999999
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHHH
Q 019264 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLY 164 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~ 164 (343)
|.++.-+....+.|++++|++.+.+++.|+.+++|+.+++.++.-||++|.-...++++.+|+.+.++++.+++..|+.+
T Consensus 89 Ptalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~l 168 (349)
T KOG1443|consen 89 PTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFL 168 (349)
T ss_pred hhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCC-CCCChHHHHHhhhHHHHHHHHHHHHhhccCchhh-------ccch---hhHHHHHH
Q 019264 165 QVTGIVAEALRLVLTQVLLQKKG-LTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV-------SQIQ---FNFWIFFS 233 (343)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~---~~~~l~~~ 233 (343)
...++++.++++.+.|.++++++ ..-+|...+++.++...+.++|..+.+|++.... .+.. .....+..
T Consensus 169 v~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l 248 (349)
T KOG1443|consen 169 VLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL 248 (349)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999999876 4568999999999999999999999999875431 1111 11234667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
++..++.+..+-+.++.+++..+.++++..|.+.+.+++..+.+|. ++...+.|..+++.|+..|.
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~-ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQ-LSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcc-hhhhHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999999999999777 99999999999999999983
No 6
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-29 Score=214.61 Aligned_cols=295 Identities=21% Similarity=0.335 Sum_probs=254.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhH
Q 019264 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPI 86 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
+.........+.|+++|+.+++.||++++ .|+||-.+++...|.+++.+.+.. .+..|..+.++++++. .|+++|.
T Consensus 8 ~~~~~~l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~~~~l~~~~-~kk~~P~ 83 (314)
T KOG1444|consen 8 KKQSSPLLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVNFRPLDLRT-AKKWFPV 83 (314)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHH-HHHhceeecCCcChHH-HHHHccH
Confidence 34456688999999999999999999999 666665566666999988776554 4556667778888888 8999999
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHHHHH
Q 019264 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQV 166 (343)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~~l 166 (343)
.+++.++......+++|.+++.++++++.+|+++++.+.+++|.|+++..+.++..+.+|.......|.+++..|..|+.
T Consensus 84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~ 163 (314)
T KOG1444|consen 84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWAL 163 (314)
T ss_pred HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCc-hhhc--cch--hhHHHHHHHHHHHHHH
Q 019264 167 TGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-MEVS--QIQ--FNFWIFFSNALCALAL 241 (343)
Q Consensus 167 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~--~~~~l~~~~~~~~~~~ 241 (343)
.+.++.+.+.++.|+..+.. +.+.+++++|.++.+.+.+....+..++.. ...+ .+. ..+..+.++|+++++.
T Consensus 164 ~n~~~~a~~~v~~kk~vd~~--~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~i 241 (314)
T KOG1444|consen 164 ANCLTTAAFVVYVKKSVDSA--NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGI 241 (314)
T ss_pred HHHHHHHHHHHHHHHhhccc--cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999976653 468889999999999998877776655533 1111 122 2234577899999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019264 242 NFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVR 308 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~~~ 308 (343)
+++.++|.+..||++.++++ ++-.+.+.++.+.+||.+.++..++|+.+-+.|.++|++.+.++++
T Consensus 242 sy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 242 SYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 99999999999999999999 8888888888888888889999999999999999999988765433
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=1.5e-27 Score=213.86 Aligned_cols=264 Identities=12% Similarity=0.104 Sum_probs=198.2
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH-HHHHHHHhhhhh-
Q 019264 24 SGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF-FASSLWFGNTAY- 101 (343)
Q Consensus 24 ~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al- 101 (343)
.......|...+ +.+ |..++++|+++++++++++....++ + +.++++ +......|.+ ....+.+.+.+.
T Consensus 21 g~~~~~~K~~~~----~~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~--~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 91 (292)
T PRK11272 21 GSTYLVIRIGVE----SWP-PLMMAGVRFLIAGILLLAFLLLRGH-P--LPTLRQ-WLNAALIGLLLLAVGNGMVTVAEH 91 (292)
T ss_pred hhHHHHHHHHhc----cCC-HHHHHHHHHHHHHHHHHHHHHHhCC-C--CCcHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557798888 788 9999999999998887776543321 1 223444 4455555654 355777888898
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec-cceehHHHHHHHHHHHHHHHHHHHHHH
Q 019264 102 LHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG-EIHFNIVGTLYQVTGIVAEALRLVLTQ 180 (343)
Q Consensus 102 ~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~~ 180 (343)
+++|++.++++.++.|+++++++.+ +|||++++++.++.++++|+.++..+ +.+.+..|++++++++++||.+.+..|
T Consensus 92 ~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~ 170 (292)
T PRK11272 92 QNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSS 170 (292)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 69999999999999999999987643 334456799999999999999999998
Q ss_pred HHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019264 181 VLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVA 260 (343)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~ 260 (343)
|..++ ++.....+....+.+.+.+.....+.+.....+......++..+.+.+...+..+++++++.++.+.+++
T Consensus 171 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~ 245 (292)
T PRK11272 171 RLPLP-----VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY 245 (292)
T ss_pred hcCCC-----cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 86321 3344556777777776666554433321111111222223333333344555667888999999999999
Q ss_pred hhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 261 GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 261 ~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
.+++|+.+.+++++++||+ +|+.+++|.++++.|+++.+..+
T Consensus 246 ~~l~Pi~a~i~~~~~l~E~-~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 246 AYVNPVVAVLLGTGLGGET-LSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 99999999999999999876544
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=2.2e-27 Score=213.02 Aligned_cols=272 Identities=15% Similarity=0.128 Sum_probs=198.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhh
Q 019264 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVP 85 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
.+.....+..+++|+.... ..|..++ ++| |..+.++|+.++.+++.++.. + + +.++++ .+..+.
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~----~~k~~~~----~~~-P~~~~~~R~~~a~l~l~~~~~---~-~--~~~~~~-~~~~~~ 66 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVG----LIRGVSE----SLG-PVGGAAMIYSVSGLLLLLTVG---F-P--RLRQFP-KRYLLA 66 (295)
T ss_pred cchhHHHHHHHHHHHHHHH----HHHHHHc----cCC-hHHHHHHHHHHHHHHHHHHcc---c-c--cccccc-HHHHHH
Confidence 3445566777788877654 6699998 888 999999999998887665421 1 1 111111 234444
Q ss_pred HHHHHHHHHHHhhhhhc----ccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccce-----
Q 019264 86 ISAFFASSLWFGNTAYL----HISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIH----- 156 (343)
Q Consensus 86 ~~~~~~~~~~~~~~al~----~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~----- 156 (343)
.++.+.....+.+.+++ +++++.+.++.++.|+++.+++++++|||+++.++.++.++++|+.++..++.+
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 146 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE 146 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence 55556667777777775 468888999999999999999999999999999999999999999988765421
Q ss_pred ------ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHH
Q 019264 157 ------FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWI 230 (343)
Q Consensus 157 ------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 230 (343)
.+..|++++++++++||.|+++.||..++ .++..... ..+.+.+.+.....+.+.. ...+....++
T Consensus 147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~----~~~~~~~~---~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l 218 (295)
T PRK11689 147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG----KNGITLFF---ILTALALWIKYFLSPQPAM-VFSLPAIIKL 218 (295)
T ss_pred hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHHH---HHHHHHHHHHHHHhcCccc-cCCHHHHHHH
Confidence 23469999999999999999999997433 45554322 2223333333333332211 1112222223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 231 FFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
...++.+...+..+++++++.+|..++++.+++|+++++++++++||+ +++.+++|.++++.|+.+....+
T Consensus 219 -~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~-~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 219 -LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP-LSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred -HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhHHHHhhhH
Confidence 334455666777889999999999999999999999999999999888 99999999999999998875544
No 9
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=8e-27 Score=210.13 Aligned_cols=272 Identities=22% Similarity=0.380 Sum_probs=221.8
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccch
Q 019264 27 ILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISV 106 (343)
Q Consensus 27 ~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 106 (343)
...++.+.+. .++.++|..+++.|++...+.........+..++++.+ +++.++.++++.++..+.+.|++|+|.
T Consensus 16 g~~qE~i~~~-~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 16 GILQEKIMTT-PYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIP----LKKYAILSFLFFLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHHHHcC-CCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcCh----HHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 3455666553 33335799999999998887766655443322223333 567788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccce----------ehHHHHHHHHHHHHHHHHHH
Q 019264 107 AFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIH----------FNIVGTLYQVTGIVAEALRL 176 (343)
Q Consensus 107 ~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~----------~~~~G~~~~l~s~~~~a~~~ 176 (343)
+..+++|++.|+++++++.+++|||+++.++.++++..+|+++...+|.. ....|+++.+++.++.|++.
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998875421 11239999999999999999
Q ss_pred HHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHh--hccCchh---hccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019264 177 VLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYL--LEKPMME---VSQIQFNFWIFFSNALCALALNFSIFLVIGR 251 (343)
Q Consensus 177 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (343)
+++||..++ ++.++.+.++|.+.++.+..++.... .++.... ...++.....+...+++++..+...+.++++
T Consensus 171 ~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~ 248 (303)
T PF08449_consen 171 VYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKK 248 (303)
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999887 45788999999999999988776665 2222111 2234445556777888888888888899999
Q ss_pred hhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 019264 252 TGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKD 306 (343)
Q Consensus 252 ~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~ 306 (343)
.||.+.+++..++.++++++|.+++|++ +++.+|+|+++++.|..+|...++|+
T Consensus 249 ~~al~~t~v~t~Rk~~sillS~~~f~~~-~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 249 FSALTTTIVTTLRKFLSILLSVIIFGHP-LSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred cCchhhhhHHHHHHHHHHHHHHHhcCCc-CChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999776 99999999999999999999877553
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=2.7e-26 Score=206.50 Aligned_cols=275 Identities=14% Similarity=0.186 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHH
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPIS 87 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
.....+...++|+.... ..|..++ +++ |..+.++|+.++++.+.++.+ + ++.++ +.....+
T Consensus 5 ~~l~~l~~~~~Wg~~~~----~~k~~~~----~~~-p~~~~~~R~~~a~~~l~~~~~--~----~~~~~----~~~~~~g 65 (299)
T PRK11453 5 DGVLALLVVVVWGLNFV----VIKVGLH----NMP-PLMLAGLRFMLVAFPAIFFVA--R----PKVPL----NLLLGYG 65 (299)
T ss_pred HHHHHHHHHHHHhhhHH----HHHHHHh----cCC-HHHHHHHHHHHHHHHHHHHhc--C----CCCch----HHHHHHH
Confidence 34556667778877765 5588888 788 999999999987766544332 1 11222 2233334
Q ss_pred HHH-HHHHHHhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc---ceehHHHH
Q 019264 88 AFF-ASSLWFGNTAYLH-ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGT 162 (343)
Q Consensus 88 ~~~-~~~~~~~~~al~~-~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~---~~~~~~G~ 162 (343)
++. .....+.+.+++| .|++.+.++.++.|+++.+++++++|||+++++++++.++++|+.++..++ .+.+..|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~ 145 (299)
T PRK11453 66 LTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGF 145 (299)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHH
Confidence 433 3455567788887 689999999999999999999999999999999999999999999877542 22345799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchh---hccc--hhhHHHHHHHHHH
Q 019264 163 LYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME---VSQI--QFNFWIFFSNALC 237 (343)
Q Consensus 163 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~ 237 (343)
.++++++++|+.|+++.||..++. ...+......+....+.+.........|++... ...+ .....++..+.+.
T Consensus 146 ~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~ 224 (299)
T PRK11453 146 MLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHH
Confidence 999999999999999999975432 122333444454544444333333333433211 1111 2222233333444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
+...+..+++.+++.+|.+++++.+++|+++.++|++++||+ +++.+++|.++++.|+++..+.+
T Consensus 225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~-~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER-LTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHhcch
Confidence 555666678889999999999999999999999999999887 99999999999999998866544
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=3.7e-26 Score=204.96 Aligned_cols=268 Identities=9% Similarity=0.045 Sum_probs=196.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHH
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPIS 87 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
.....++.++.|...+. ..|+..+ +++ |..+.++|++++.++++++.+..+ .+.++++ ++..+..|
T Consensus 13 ~~~~~~la~~~~~~~~~----~~K~~~~----~~~-~~~~~~~R~~~a~l~l~~~~~~~~----~~~~~~~-~~~~~~~g 78 (293)
T PRK10532 13 PILLLLIAMASIQSGAS----LAKSLFP----LVG-APGVTALRLALGTLILIAIFKPWR----LRFAKEQ-RLPLLFYG 78 (293)
T ss_pred HHHHHHHHHHHHHhhHH----HHHHHHH----HcC-HHHHHHHHHHHHHHHHHHHHhHHh----ccCCHHH-HHHHHHHH
Confidence 34455555555554443 6799998 788 999999999999888776543211 1334455 45566677
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc---ceehHHHHHH
Q 019264 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGTLY 164 (343)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~---~~~~~~G~~~ 164 (343)
++++..+.+.++|++++|++.++++..+.|+++.+++ +||+++ ..++.++++|+.++...+ .+.+..|+++
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll 152 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAAL 152 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHH
Confidence 7778888889999999999999999999999999886 355554 445677889998765322 2335679999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHH
Q 019264 165 QVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFS 244 (343)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 244 (343)
+++++++||.|.+..||..++ .++... .+....+.+.+.+.....+.... .++.....++..+.+++...+..
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGAE----HGPATV-AIGSLIAALIFVPIGALQAGEAL--WHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----CCchHH-HHHHHHHHHHHHHHHHHccCccc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998544 345554 34556666666665554332111 11222222333444445555666
Q ss_pred HHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 245 IFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 245 ~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
+++++++.+|.+++++.+++|+++.++|++++||. +++.+++|.++++.|.+.+....
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~-~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET-LTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999887 99999999999999999987554
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=6.7e-26 Score=203.57 Aligned_cols=278 Identities=10% Similarity=0.115 Sum_probs=195.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCc--c-ChhhhhHH
Q 019264 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVK--M-TFEIYATC 82 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~--~-~~~~~~~~ 82 (343)
.+.....+...++|+.... ..|.. . +.+ |..+.++|++++.+++.+.....++++..+ . ++++ ...
T Consensus 7 ~~g~~~~l~a~~~wg~~~~----~~k~~-~----~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 75 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPA----YFKLI-Y----YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQK-IFM 75 (296)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHh-c----CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHH-HHH
Confidence 3455666666677776654 44764 5 577 999999999998876665544322111100 1 2222 222
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHH
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGT 162 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~ 162 (343)
....+++.+.++.++++|++++|++.++++.++.|+++++++++++|||++++++.++.++++|+.++..++.+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~ 151 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----P 151 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----c
Confidence 334566777899999999999999999999999999999999999999999999999999999999876432221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchh-hHHHHHHHHHHHHHH
Q 019264 163 LYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQF-NFWIFFSNALCALAL 241 (343)
Q Consensus 163 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 241 (343)
.++++++++||.|.++.|+..++ ...+......+..+.+.+...+.. +.+.......+. .+...+..++.+...
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~ 226 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVE--AQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVP 226 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHH
Confidence 46888999999999998875321 112333334444444444322211 111110001111 122333344456667
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 242 NFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
+.+++.++++.+|..++++.+++|+++.++|++++||+ +++.+++|+++++.|+.+......
T Consensus 227 ~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~-~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 227 LLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK-PGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999887 999999999999998887765543
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=8e-26 Score=199.75 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=195.2
Q ss_pred HHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchh
Q 019264 28 LYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVA 107 (343)
Q Consensus 28 ~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 107 (343)
...|+.+++ +.| |..+.+.|++++.+++.+..+. + .+++++.+.....+++...++.+.+.|++|+|++
T Consensus 6 ~~~k~~~~~---~~~-~~~~~~~r~~~~~l~l~~~~~~-~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~ 74 (260)
T TIGR00950 6 VVIGQYLEG---QVP-LYFAVFRRLIFALLLLLPLLRR-R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVG 74 (260)
T ss_pred HHHHHHHhc---CCC-HHHHHHHHHHHHHHHHHHHHHh-c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 356888871 355 8999999999887776655432 1 2233323444445556788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc-ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019264 108 FIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE-IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKK 186 (343)
Q Consensus 108 ~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 186 (343)
.++++.++.|+++++++.+++|||++++++.++.++++|+.++..++ .+.+..|++++++++++|+.+.++.|+..++
T Consensus 75 ~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~- 153 (260)
T TIGR00950 75 EAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK- 153 (260)
T ss_pred hhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc-
Confidence 99999999999999999999999999999999999999999876543 3455789999999999999999999998654
Q ss_pred CCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhH
Q 019264 187 GLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDW 266 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv 266 (343)
.+.++.....+....+.+.+.+.....+.+... +.....+++..+.+.....+..+++++++.++.+++.+.+++|+
T Consensus 154 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv 230 (260)
T TIGR00950 154 -EGPELLQFTGWVLLLGALLLLPFAWFLGPNPQA--LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPL 230 (260)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 223344555466777777776666554433221 12222234444445556677778889999999999999999999
Q ss_pred HhhhhhhhccCCCccchhhHHHHHHHHHHH
Q 019264 267 ILIALSTVIFPESTITGLNIIGYAIALCGV 296 (343)
Q Consensus 267 ~~~~~~~~~~~e~~~s~~~~~G~~lil~g~ 296 (343)
++.+++++++||+ ++..+++|..+++.|+
T Consensus 231 ~~~ll~~~~~~E~-~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 231 VALLLGLLILGET-LSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHHHhc
Confidence 9999999999887 9999999999999886
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=2e-25 Score=199.31 Aligned_cols=260 Identities=16% Similarity=0.192 Sum_probs=204.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhcc-CCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q 019264 40 NFPFPITLTMIHMGFSGVVAFFLVRVFKVV-SPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPV 118 (343)
Q Consensus 40 ~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv 118 (343)
+++.|.+-+++-++.-.++.......++.. +..+.-+++ +++.+..+++...++++.+.|++|++.+.++++.+++.+
T Consensus 39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~-~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~ 117 (334)
T PF06027_consen 39 GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRP-WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIP 117 (334)
T ss_pred CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchh-HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhH
Confidence 677788888777765444333222221111 111222334 567777899999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc---------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 019264 119 ATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI---------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLT 189 (343)
Q Consensus 119 ~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 189 (343)
++++++++++|+|+++.+++|++++++|+.++...|. +....|+++++.|+++||+++++.|+..++
T Consensus 118 ~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~---- 193 (334)
T PF06027_consen 118 FVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK---- 193 (334)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 9999999999999999999999999999998877652 234789999999999999999999998876
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHh
Q 019264 190 LNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFW-IFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWIL 268 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~ 268 (343)
.+..+...+..+++.++..+.....|........|+...+ +.+..+++-+..+...-..++..||+...+-.....+.+
T Consensus 194 ~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~a 273 (334)
T PF06027_consen 194 APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYA 273 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHH
Confidence 4678888888999999888887777766554333443333 333344555555555566799999999999888889999
Q ss_pred hhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 019264 269 IALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 269 ~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
++++++++|++ +++..++|.+++++|.++|+..+.+
T Consensus 274 li~~i~~f~~~-~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 274 LIIDIFFFGYK-FSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHhcCcc-ccHHHHHHHHHHHHHhheEEccCCc
Confidence 99999999887 9999999999999999999876543
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.1e-27 Score=195.07 Aligned_cols=303 Identities=18% Similarity=0.226 Sum_probs=251.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc------CCCccChhhhhH
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVV------SPVKMTFEIYAT 81 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~------~~~~~~~~~~~~ 81 (343)
+..........+.+.++++.+.||++++......+.|.++++.|+++...+++.+-+..++. +..+++.+. .+
T Consensus 25 n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t-~r 103 (347)
T KOG1442|consen 25 NAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLAT-AR 103 (347)
T ss_pred hhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHH-HH
Confidence 34455667778889999999999999995455677899999999999988887776544332 122344444 78
Q ss_pred HhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc---ceeh
Q 019264 82 CVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFN 158 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~---~~~~ 158 (343)
+.++.++.+.++..+.|++++|++++.+.+-++++.+|+.+++++++|||-+.....++.+++.|-.+-+..| ...+
T Consensus 104 ~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls 183 (347)
T KOG1442|consen 104 QVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLS 183 (347)
T ss_pred hhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998888776 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccC-chh--hccchhhHH-HHHHH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKP-MME--VSQIQFNFW-IFFSN 234 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~-l~~~~ 234 (343)
+.|.++++.|+++-|+..++.||..... +-.-+.+.+|+++.+.++.+|......+- ... ...+...+| ++.++
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v--~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPV--GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccc--cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 8999999999999999999999875442 22346788999999998877766543221 111 122334444 68889
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 019264 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVRASSQLP 314 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~~~~~~~~~ 314 (343)
++++|.+++...+-+|.+||.|+.+.+..|....+++++.+++|. .+..-|-|-++++.|...|++.+.++.+++++++
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~-ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~ 340 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSET-KSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQR 340 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHH-hhhheeeeeEEEEehhHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999887 9999999999999999999999887776655443
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=4.5e-22 Score=177.59 Aligned_cols=274 Identities=10% Similarity=-0.016 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHH
Q 019264 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFA 91 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (343)
.+...++|-... ...|...+ +-+ + ..+.++..+.+++.++......++..+..+++++...+..++...
T Consensus 6 ~~~aa~~~a~~~----~~~k~~~~----~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 6 VVFSALMHAGWN----LMAKSHAD----KEP-D--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHH----HHHhhcCC----chh-H--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHH
Confidence 344444444443 35575555 222 3 346666656555555443321112222222332445556666778
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc-eehHHHHHHHHHHHH
Q 019264 92 SSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI-HFNIVGTLYQVTGIV 170 (343)
Q Consensus 92 ~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~-~~~~~G~~~~l~s~~ 170 (343)
....+.+.|+++.|++.++.+.++.|+++.+++++++|||+++.+++|+.++++|+.++..++. ..+..|+.+++++++
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal 154 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAAL 154 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998765432 234578889999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019264 171 AEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIG 250 (343)
Q Consensus 171 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 250 (343)
+|+.|.+..|+..++.+...+......+........+.+.....+...... .....+.....+++.+...+..++++++
T Consensus 155 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~l~~~l~~~al~ 233 (281)
T TIGR03340 155 GTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFP-YARQILPSATLGGLMIGGAYALVLWAMT 233 (281)
T ss_pred HHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988765322110111111222222222111112111112211111 1112233455556666677778889999
Q ss_pred hhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHH
Q 019264 251 RTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 251 ~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~ 298 (343)
+.++..++.+.+++|++++++|++++||+ ++..+++|.++++.|+.+
T Consensus 234 ~~~a~~~~~~~~l~pv~a~l~g~~~lgE~-~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 234 RLPVATVVALRNTSIVFAVVLGIWFLNER-WYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hCCceEEEeecccHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999887 999999999999999875
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=8.5e-22 Score=173.54 Aligned_cols=248 Identities=8% Similarity=0.047 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCC-----CccChhhhhHH
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP-----VKMTFEIYATC 82 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~-----~~~~~~~~~~~ 82 (343)
.........++|+..+. ..|. .. +.+ |..++++|++++.+++.++....++++. ++.++++....
T Consensus 3 g~~~~i~a~~~wg~~~~----~~k~-~~----~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYY----YSKL-LK----PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILS 72 (256)
T ss_pred cHHHHHHHHHHHHHHHH----HHHH-hc----cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHH
Confidence 45666777778887766 5587 45 577 9999999999988776665433322110 11112221334
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHH
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGT 162 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~ 162 (343)
....+++.+.++.++++|+++++++.++++.+++|+++++++++++|||+++++++++.++++|+.++..++.+.+
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~---- 148 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP---- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----
Confidence 5566777888999999999999999999999999999999999999999999999999999999997754322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHH
Q 019264 163 LYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALN 242 (343)
Q Consensus 163 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (343)
.++++++++||.|.+..|+..++ +..+.... .....+...+.....+.+..........+..++..++.+...+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT-----DLAGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC-----CcchHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence 35788999999999999886321 22222111 1222222221111222211111111112233333445566777
Q ss_pred HHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhc
Q 019264 243 FSIFLVIGRTGAVTIRVAGVLKDWILIALSTVI 275 (343)
Q Consensus 243 ~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~ 275 (343)
..++.++++.+|..++++.+++|+++.+++.+.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999998764
No 18
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.90 E-value=3.8e-22 Score=162.09 Aligned_cols=285 Identities=18% Similarity=0.285 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHH
Q 019264 13 YLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFAS 92 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (343)
....+.|+.+|+.+++.||++++. .+|+-.+.+.+.|.+++.+-+.++ ++.|.. +.+.++ .+++.+.+++...
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~--~gfnMnflll~vQSlvcvv~l~iL-k~l~~~---~fR~t~-aK~WfpiSfLLv~ 80 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSN--LGFNMNFLLLAVQSLVCVVGLLIL-KFLRLV---EFRLTK-AKKWFPISFLLVV 80 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecC--CCCchhhHHHHHHHHHHHHHHHHH-HHHhHh---heehhh-hhhhcCHHHHHHH
Confidence 346788999999999999999994 455545778888998876665443 333322 222333 6778899999999
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccce--------ehHHHHHH
Q 019264 93 SLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIH--------FNIVGTLY 164 (343)
Q Consensus 93 ~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~--------~~~~G~~~ 164 (343)
+.+..-.+++|.+++.++++++++.+.++....+++|.|.+..+..+.++++..-+...++|.+ .+ .|.+|
T Consensus 81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~W 159 (309)
T COG5070 81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLW 159 (309)
T ss_pred HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEE
Confidence 9999999999999999999999999999999999999999999999999999999999998863 33 59999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchh--hccchh-hHHHHHHHHHHHHHH
Q 019264 165 QVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME--VSQIQF-NFWIFFSNALCALAL 241 (343)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~ 241 (343)
+...++..+.+-...|+-.+- ......+.++|.++.+.+.++...+..|+.... ..+.+. .....+++++++++.
T Consensus 160 m~~NclssaafVL~mrkri~l--tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 160 MFTNCLSSAAFVLIMRKRIKL--TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred EehhhHhHHHHHHHHHHhhcc--cccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence 999999999998888875442 224567889999999999999999888876543 222222 223466799999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019264 242 NFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVR 308 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~~~ 308 (343)
.++.-|+++.++.++.++++.++.....+.|.++|+++ .+...+..+.+=.....+|...+.++++
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap-~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAP-VNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999655 9999999998888888899887765433
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4e-22 Score=163.26 Aligned_cols=255 Identities=16% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH
Q 019264 40 NFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVA 119 (343)
Q Consensus 40 ~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 119 (343)
.|.|.+.+.+.|+....++.-++..++++.+..+.+ -+.....++-|.+.+...|.|++|+|.++..+-+++-|+-
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~----~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIP 124 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTP----TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIP 124 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecccccccCCc----chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcc
Confidence 377889999999998877765544433222222222 4667788899999999999999999999999999999999
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc-------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCh
Q 019264 120 TFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI-------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNP 192 (343)
Q Consensus 120 ~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~ 192 (343)
++++++++.+++.+|.++.++.++++|+++..+.+. ...-.|-++.++|.-..++....++|.-.. +..++
T Consensus 125 VMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~--yq~~g 202 (337)
T KOG1580|consen 125 VMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRAS--YQRTG 202 (337)
T ss_pred eeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHh--hccCc
Confidence 999999999999999999999999999999877532 223579999999999999999988886332 55678
Q ss_pred HHHHHhhhHHHHHHHHHHHHh-hccCchh--hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhh
Q 019264 193 ITSLYYIAPCSFVFLFVPWYL-LEKPMME--VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILI 269 (343)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~ 269 (343)
..++++.++++.+.+....++ .|...+. .+.+++.+|-+..-++++...+.+.|..+...+|.+-|+++..+..+++
T Consensus 203 ~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTi 282 (337)
T KOG1580|consen 203 TSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTI 282 (337)
T ss_pred hhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHH
Confidence 889999999999877555443 3333332 4567788887777788888899999999999999999999999999999
Q ss_pred hhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 270 ALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 270 ~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
+.|+++|++. ++.+||+|.++++.|...-..
T Consensus 283 l~SVllf~np-ls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 283 LISVLLFNNP-LSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHhcCc-CcHHHHHHHHHHHHHhhhHhh
Confidence 9999999776 999999999999999876443
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=2.1e-19 Score=161.04 Aligned_cols=260 Identities=14% Similarity=0.154 Sum_probs=183.8
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccch
Q 019264 27 ILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISV 106 (343)
Q Consensus 27 ~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 106 (343)
....|...+ +...+....+.|++.+.+....... .++.+..+..++ ..+..+..++.......+++.+++++++
T Consensus 23 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (292)
T COG0697 23 FIALKLAVE----SLDPFLFAAALRFLIAALLLLPLLL-LEPRGLRPALRP-WLLLLLLALLGLALPFLLLFLALKYTSA 96 (292)
T ss_pred HHHHHHHhc----ccCChHHHHHHHHHHHHHHHHHHHH-hhcccccccccc-hHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 345566666 3232566666699887766332222 111111111111 1345556666778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHhhhhheeeccceeh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019264 107 AFIQMLKALMPVATFFMAV-LCGTDKARLDVFLNMVLVSVGVVISSYGEIHFN---IVGTLYQVTGIVAEALRLVLTQVL 182 (343)
Q Consensus 107 ~~~~ii~~~~Pv~~~~ls~-l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~~~~ 182 (343)
+.++.+.++.|+++.+++. +++|||+++.++.++.+.+.|+.++...+...+ ..|+.+++.++++++++.+..|+.
T Consensus 97 ~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~ 176 (292)
T COG0697 97 SVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRL 176 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999997 777999999999999999999999988765433 589999999999999999999987
Q ss_pred hhhCCCCCChHHHHH-hhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHH
Q 019264 183 LQKKGLTLNPITSLY-YIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL-ALNFSIFLVIGRTGAVTIRVA 260 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~a~~~si~ 260 (343)
. + .++..... +... ....+.......+.+ ..... ..+......++.+. ..+..++...++.++...+++
T Consensus 177 ~-~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (292)
T COG0697 177 S-R----LGPVTLALLLQLL-LALLLLLLFFLSGFG--APILS-RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL 247 (292)
T ss_pred c-C----CChHHHHHHHHHH-HHHHHHHHHHhcccc--ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 5 2 34444444 3333 222222222222222 11111 12222333333333 566778889999999999999
Q ss_pred hhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 261 GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 261 ~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
..++|+.+++++++++||+ ++..+++|.++++.|..+....
T Consensus 248 ~~~~~v~~~~~~~l~~~e~-~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 248 SLLEPVFAALLGVLLLGEP-LSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887 9999999999999999987655
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=9e-19 Score=149.37 Aligned_cols=259 Identities=17% Similarity=0.174 Sum_probs=212.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH
Q 019264 40 NFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVA 119 (343)
Q Consensus 40 ~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 119 (343)
.|.+|.++.+.|-+++.++.....+..+.. .+.++.+++....++.......+++.|++|++-++..+-|++--+-
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~----~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP 122 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKE----LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP 122 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccccc----CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH
Confidence 477799999999999888776555533322 2222226677788889999999999999999999999999999999
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc---------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 019264 120 TFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI---------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTL 190 (343)
Q Consensus 120 ~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~ 190 (343)
+++.+.++.|+|+++.+++...++..|+.+....+. ..++.|+.++..+.+..++.+..++++.++ +++
T Consensus 123 Vmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~--~k~ 200 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKK--YKV 200 (327)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc--CCc
Confidence 999999999999999999999999999987654321 245899999999999999999999999875 678
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHhhccC--chh-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHH
Q 019264 191 NPITSLYYIAPCSFVFLFVPWYLLEKP--MME-VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWI 267 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~ 267 (343)
+++.++++.++++++..+.-...-+.. ... ...++..++-+...+.++...+.+.++.+++.++.+.+.++..+..+
T Consensus 201 s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~ 280 (327)
T KOG1581|consen 201 SSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMV 280 (327)
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHH
Confidence 999999999999998765543222211 111 34466667777778888888899999999999999999999999999
Q ss_pred hhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 019264 268 LIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 268 ~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
++.++.+++|.+ +++.||.|..+++.|..+-...+.+
T Consensus 281 si~lS~i~f~h~-~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 281 SIMLSCIVFGHP-LSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHhCCc-cchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999766 9999999999998888775555544
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.85 E-value=1.1e-18 Score=144.90 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=194.8
Q ss_pred HHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhH
Q 019264 29 YNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAF 108 (343)
Q Consensus 29 ~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 108 (343)
+.|..+. .++ |.-.+.+|..++++++..+.+-++ .+.++++ ++.++..|...++++.++|.+++.+|.++
T Consensus 30 ~Ak~LFP----~vG-~~g~t~lRl~~aaLIll~l~RPwr----~r~~~~~-~~~~~~yGvsLg~MNl~FY~si~riPlGi 99 (292)
T COG5006 30 FAKSLFP----LVG-AAGVTALRLAIAALILLALFRPWR----RRLSKPQ-RLALLAYGVSLGGMNLLFYLSIERIPLGI 99 (292)
T ss_pred HHHHHcc----ccC-hhhHHHHHHHHHHHHHHHHhhHHH----hccChhh-hHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4577777 666 999999999999999887766444 3455666 67888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc---ceehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019264 109 IQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGTLYQVTGIVAEALRLVLTQVLLQK 185 (343)
Q Consensus 109 ~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~ 185 (343)
+..+..+.|+.+.+++ .+ +.+....+.+.+.|+.++.... .+.|+.|..+++.+..||+.|.+..||.-+.
T Consensus 100 AVAiEF~GPL~vA~~~----sR--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~ 173 (292)
T COG5006 100 AVAIEFTGPLAVALLS----SR--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA 173 (292)
T ss_pred hhhhhhccHHHHHHHh----cc--chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc
Confidence 9999999999998865 23 3345566777888888765433 4567899999999999999999999887432
Q ss_pred CCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 019264 186 KGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV-SQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLK 264 (343)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~ 264 (343)
.|...-+...+..+.+..+|......++.... .-........+.++...|.+ -..++++.++.+.++...+|
T Consensus 174 ----~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL---EmiAL~rlp~~~F~~LlSLe 246 (292)
T COG5006 174 ----EHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL---EMIALRRLPARTFGTLLSLE 246 (292)
T ss_pred ----CCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH---HHHHHhhCChhHHHHHHHhh
Confidence 45666778888888888888876544443321 11112223344555555554 44469999999999999999
Q ss_pred hHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 265 DWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 265 pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
|.++.+.|++++||. +|..||+|++.++.++.-.+...
T Consensus 247 Pa~aAl~G~i~L~e~-ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 247 PALAALSGLIFLGET-LTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 999999999999888 99999999999999887654443
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=7.9e-19 Score=146.90 Aligned_cols=275 Identities=13% Similarity=0.205 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHh
Q 019264 19 YILLSSGVILYNKWVLSPKYFNFP-FPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFG 97 (343)
Q Consensus 19 ~~~~~~~~~~~~k~~l~~~~~~~~-~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (343)
.++.-...-.+.+++.+ ..+|. +.+.+++.|+++-..+.++.....+ .++...|| +....++.+-.+.+.+.
T Consensus 51 ~Ff~Yl~yGy~qElif~--~~gfkp~GWylTlvQf~~Ysg~glie~~~~~-~k~r~iP~----rtY~~la~~t~gtmGLs 123 (367)
T KOG1582|consen 51 VFFLYLVYGYLQELIFN--VEGFKPFGWYLTLVQFLVYSGFGLIELQLIQ-TKRRVIPW----RTYVILAFLTVGTMGLS 123 (367)
T ss_pred HHHHHHHHHHHHHHHhc--cccCcccchHHHHHHHHHHHhhhheEEEeec-ccceecch----hHhhhhHhhhhhccccC
Confidence 33334455557888888 66777 7799999999865444333332221 12334554 55567788888999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc----ceehHHHHHHHHHHHHHHH
Q 019264 98 NTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE----IHFNIVGTLYQVTGIVAEA 173 (343)
Q Consensus 98 ~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~----~~~~~~G~~~~l~s~~~~a 173 (343)
+-++.|.+.+...+++++--+-+++.+.++-++|..+.++.+..+...|++.....| ++++..|..+.-++.++.|
T Consensus 124 n~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA 203 (367)
T KOG1582|consen 124 NGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADA 203 (367)
T ss_pred cCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776 4577899999999999999
Q ss_pred HHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCc--hh-hccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 019264 174 LRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM--ME-VSQIQF-NFWIFFSNALCALALNFSIFLVI 249 (343)
Q Consensus 174 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 249 (343)
.-.-.+++.++..+ -+..++++|....+.+.++.+.....+.. +. ...+++ .....++-++.++....+...++
T Consensus 204 ~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI 281 (367)
T KOG1582|consen 204 VIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALI 281 (367)
T ss_pred HhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHH
Confidence 88888888887643 35678999999999999887766544321 11 233333 34456666777888888888889
Q ss_pred hhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 250 GRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 250 ~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
+..+|.+++.+++.+..+++++|.++| .+++|.....|..+++.|+++-.+.+
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllF-sKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLF-SKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHH-cCchHHHHhhhhHHHHHHHHhhcccC
Confidence 999999999999999999999999999 56699999999999999999865554
No 24
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.81 E-value=1.6e-16 Score=135.64 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=215.2
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCc---cChh
Q 019264 1 MKMMINKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVK---MTFE 77 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~---~~~~ 77 (343)
|++...++....+..-++|+.. -+..|.+- +.| +..+...|.+-+..++..+....|+.+..+ .+++
T Consensus 1 ~~~~~~~Gil~~l~Ay~lwG~l----p~y~kll~-----~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~ 70 (293)
T COG2962 1 MAKDSRKGILLALLAYLLWGLL----PLYFKLLE-----PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPK 70 (293)
T ss_pred CCCcccchhHHHHHHHHHHHHH----HHHHHHHc-----cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcH
Confidence 4555566677777777777765 44667655 466 899999999988777666655444332111 1112
Q ss_pred hhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecccee
Q 019264 78 IYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHF 157 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~ 157 (343)
. +......++..+.+...+.+|...-.+-.+++-....|++..+++.+++|||+|+.|+++++++.+|+..-.....+.
T Consensus 71 ~-~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l 149 (293)
T COG2962 71 T-LLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL 149 (293)
T ss_pred H-HHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2 334445677788899999999999999999999999999999999999999999999999999999999887766666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCch-hhccchhhHHHHHHHHH
Q 019264 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMM-EVSQIQFNFWIFFSNAL 236 (343)
Q Consensus 158 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 236 (343)
++. .+.=+++|++|...-|+. ++|+.+-.......-.+..+...++.++... ...+....+++++..|.
T Consensus 150 pwv----al~la~sf~~Ygl~RK~~------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 150 PWV----ALALALSFGLYGLLRKKL------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL 219 (293)
T ss_pred cHH----HHHHHHHHHHHHHHHHhc------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH
Confidence 654 444567888888864443 2677777777777666666555555555442 22233445566667777
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 019264 237 CALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVRA 309 (343)
Q Consensus 237 ~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~~~~~ 309 (343)
.+..--.....+-++.+=.+.++..+++|....+++++++||. ++..+....+.+-.|+.+|.....++.++
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~-~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEP-FDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7766555566678999999999999999999999999999776 99999999999999999998776554443
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.80 E-value=7.2e-17 Score=144.22 Aligned_cols=264 Identities=13% Similarity=0.083 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH
Q 019264 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF 89 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
...+..+++|+..++.. |..- +++ +.++. |..++++++..+....+. ++ .+..+.+..-...|+.
T Consensus 4 l~~lia~~~wGs~g~~~----k~~~-----g~~-~~~~~--~~~~g~l~~~~~~~~~~~--~~-~~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 4 LIALIPALFWGSFVLIN----VKIG-----GGP-YSQTL--GTTFGALILSIAIAIFVL--PE-FWALSIFLVGLLSGAF 68 (290)
T ss_pred HHHHHHHHHHhhhHHHH----hccC-----CCH-HHHHH--HHHHHHHHHHHHHHHHhC--Cc-ccccHHHHHHHHHHHH
Confidence 45566778888877643 5432 455 43443 677777766555444332 11 2212213334455667
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHH-HHHHHHHHHHHHhcccccchhh----HHHHHHHHhhhhheeeccce-------e
Q 019264 90 FASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDV----FLNMVLVSVGVVISSYGEIH-------F 157 (343)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~~~ii~~-~~Pv~~~~ls~l~~~ek~s~~~----~~~~~~~~~G~~l~~~~~~~-------~ 157 (343)
.+.++.+++.+.++++++.+..+.+ +.|++..+++.+++|||.++++ ++++.++++|+.+....+.+ .
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~ 148 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEF 148 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccccccc
Confidence 8888999999999999999999998 8899999999999999999999 99999999999987654221 2
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHH---HhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHH
Q 019264 158 N-IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSL---YYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFS 233 (343)
Q Consensus 158 ~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (343)
+ ..|++++++|+++|+.|.+..|+. + ++|.+.+ .+....+.....++.. +..+. .+...+....
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~ 216 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAF-G-----VDGLSVLLPQAIGMVIGGIIFNLGHI--LAKPL----KKYAILLNIL 216 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc-C-----CCcceehhHHHHHHHHHHHHHHHHHh--cccch----HHHHHHHHHH
Confidence 3 689999999999999999999864 1 4666663 3333334443333321 11111 1223334444
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhH----HHHHHHHHHHHHHHH
Q 019264 234 NALCALALNFSIFLVIG-RTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNI----IGYAIALCGVVMYNY 301 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~----~G~~lil~g~~~~~~ 301 (343)
.++.....+..++...+ +.++.+.++...++|+.+++.+++++||. .+..|+ +|.++++.|+.+...
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~-~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK-KTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC-CCcceeehhHHHHHHHHHHHHHHhc
Confidence 66666667777778888 99999999999999999999999999888 999999 999999999987543
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=7.2e-18 Score=147.63 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=176.8
Q ss_pred hHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc----
Q 019264 80 ATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI---- 155 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~---- 155 (343)
.+..+..+.+.+..++++|.|+.+++++..+++.+++-+||..++.++..||+++.+.+++.+.++|++++..+|.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3444555666778899999999999999999999999999999999999999999999999999999999988743
Q ss_pred ----eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhcc---CchhhccchhhH
Q 019264 156 ----HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEK---PMMEVSQIQFNF 228 (343)
Q Consensus 156 ----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 228 (343)
+....|.+++++|++.||.|.++.||...+++.+.|-.....+..++..+++-|+....+. +.+.. .....+
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l-P~~~q~ 317 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL-PSSTQF 317 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC-CCCcee
Confidence 2347899999999999999999999987776556676666677788888877766654332 11211 011112
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 229 W-IFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 229 ~-l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
. ++..+.+..+..-+.+.++.-.++|.++.+-..+.-.++++...++- +.++|+.+++|...|++|.+..++...
T Consensus 318 ~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k-~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 318 SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIK-GKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhheecccc
Confidence 2 23334555666777888889999999999999998888888888776 455999999999999999998776653
No 27
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.79 E-value=3.8e-17 Score=137.54 Aligned_cols=284 Identities=17% Similarity=0.225 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CccCh
Q 019264 14 LYLLIYILLSSGVILYNKWVLSP--KY-FNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP--------------VKMTF 76 (343)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~l~~--~~-~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~--------------~~~~~ 76 (343)
+.-++..++++.++++.||.=+. ++ -+|++|..-+..-|+ +-+.|+...+..|.+.. .+.+.
T Consensus 6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFl-GEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf 84 (372)
T KOG3912|consen 6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFL-GEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPF 84 (372)
T ss_pred hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCcccccccccccccCCC
Confidence 34456677888899999998432 12 247778766665554 44444444333332211 10122
Q ss_pred hhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc-
Q 019264 77 EIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI- 155 (343)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~- 155 (343)
+ -...++.+++...+..+.+.|+.+++++.+|+++....+|+.+++.-++++++..++|+++....+|++++...|.
T Consensus 85 ~--p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 85 N--PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred C--cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence 2 2345678999999999999999999999999999999999999999999999999999999999999998776532
Q ss_pred ---------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHH----HHHHhhccCchh--
Q 019264 156 ---------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLF----VPWYLLEKPMME-- 220 (343)
Q Consensus 156 ---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~-- 220 (343)
+.-+.|+++.+.+-+..|.+.++.+|.+++ .+.+|.+...|...++.+++. |..+...+.+..
T Consensus 163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~--~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~ 240 (372)
T KOG3912|consen 163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK--SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCN 240 (372)
T ss_pred cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh--ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCC
Confidence 233689999999999999999999999887 458999999999998866542 222222221111
Q ss_pred ----hccchhh---------HHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhH
Q 019264 221 ----VSQIQFN---------FWIFFSNA-LCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNI 286 (343)
Q Consensus 221 ----~~~~~~~---------~~l~~~~~-~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~ 286 (343)
.++|... ..+...+. +...+.|++.....|..||++-.+...++..+.++++.....|. ++..|+
T Consensus 241 ~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~-f~llqi 319 (372)
T KOG3912|consen 241 PRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY-FHLLQI 319 (372)
T ss_pred CCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHH
Confidence 1111111 11111121 22334677777889999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019264 287 IGYAIALCGVVMYNYIK 303 (343)
Q Consensus 287 ~G~~lil~g~~~~~~~~ 303 (343)
.|.++.+.|.++|+..-
T Consensus 320 lGFliLi~Gi~lY~~il 336 (372)
T KOG3912|consen 320 LGFLILIMGIILYNQIL 336 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998543
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.1e-15 Score=134.14 Aligned_cols=286 Identities=14% Similarity=0.143 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh----ccCCCcc------Chhhhh
Q 019264 11 LTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFK----VVSPVKM------TFEIYA 80 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~----~~~~~~~------~~~~~~ 80 (343)
.....+++-.+-+.+.....|+.-+.++..|. |.+..++-=++-.+++........ ++..+.+ .+++ .
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~ 92 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRE-T 92 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHH-H
Confidence 55666666777778888899998886655565 666665544444444433332211 1111111 2233 3
Q ss_pred HHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc------
Q 019264 81 TCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE------ 154 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~------ 154 (343)
.++...+++|...+-+.+.++.+.+++++++...+..+.|++++.++++||.+++||.++++.++|+.+.-.+.
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 55666788999988899999999999999999999999999999999999999999999999999999876321
Q ss_pred -----ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCch----hhccch
Q 019264 155 -----IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMM----EVSQIQ 225 (343)
Q Consensus 155 -----~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~ 225 (343)
.+..+.|....+.++++.++..+|.+|++|+.+ .+-+........++.++.+...+..|.... ...+|.
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s 250 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS 250 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc
Confidence 123478999999999999999999999998643 344444444456666665555555554433 244566
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 226 FNFWIFFSN-ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 226 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
...|..++. ++.+..... .+|+.+...-+....+..+++.+.|+.++ |.++|....+|..+++.++.+|...+.
T Consensus 251 ~~vw~vVl~~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf-~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 251 SIVWLVVLLNAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALF-DFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHHHHHHhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 666654433 443444332 37888998888888999999999998888 566999999999999999999985444
Q ss_pred h
Q 019264 305 K 305 (343)
Q Consensus 305 ~ 305 (343)
+
T Consensus 326 ~ 326 (345)
T KOG2234|consen 326 R 326 (345)
T ss_pred c
Confidence 3
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=8.8e-16 Score=132.93 Aligned_cols=208 Identities=14% Similarity=0.148 Sum_probs=160.9
Q ss_pred hhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc
Q 019264 76 FEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI 155 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~ 155 (343)
+++ ..++...+++|...+.+.+.++++++++++++++.+..++|++++++++|+|+++.||.++.+.++|+.+...++.
T Consensus 14 ~~~-~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 14 PKD-TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 344 4566677999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred -----------------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCc
Q 019264 156 -----------------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM 218 (343)
Q Consensus 156 -----------------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 218 (343)
.....|++..++++++.++..++.||.+|+++ .+.+........++.++.++.....|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11358999999999999999999999999854 34444444556666666655554444322
Q ss_pred hh----hccchhhHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHH
Q 019264 219 ME----VSQIQFNFWIFF-SNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAI 291 (343)
Q Consensus 219 ~~----~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~l 291 (343)
.. .+.++...|..+ ..++.+... -..+|+.+...-+....+.-+++.+.++++||.. +|....+|..+
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~-~s~~f~lg~~~ 243 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFP-PSLSFLLGAAL 243 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHhhheec
Confidence 21 233444444433 333333332 3348999999999999999999999999999655 99999999765
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.70 E-value=4.8e-16 Score=125.98 Aligned_cols=140 Identities=37% Similarity=0.564 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhh-----cc-----chhh
Q 019264 161 GTLYQVTGIVAEALRLVLTQVLLQKK---GLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV-----SQ-----IQFN 227 (343)
Q Consensus 161 G~~~~l~s~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~-----~~~~ 227 (343)
|+++++.|.++.|+++++.|+.++++ +.+.++.++++|.++.+.+.++|..+..|++.... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999998873 35689999999999999999999998888776321 11 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 228 FWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
...++.+++.++..+++.+.+++++||.+.++.+.+|.++.++.|++++||+ +|..+++|+++.+.|.++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~-~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP-ITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc-CCHHHHHHHHHHHHHHheeeC
Confidence 5567788999999999999999999999999999999999999999999888 999999999999999999874
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.9e-16 Score=133.16 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcc-cchhHHHHHHHHHHHHHHH
Q 019264 44 PITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLH-ISVAFIQMLKALMPVATFF 122 (343)
Q Consensus 44 p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~ii~~~~Pv~~~~ 122 (343)
-..+++.||++-+.--++.-.-... .+++.|.++ +......+...+...|+++++ +|.+...++++.+++.+++
T Consensus 33 gNLITFaqFlFia~eGlif~skf~~-~k~kiplk~----Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKD----YAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eeehHHHHHHHHHHhceeeeccccc-cCCCCchhh----hheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 5789999998655443333211111 225566544 334445566677889999996 8999999999999999999
Q ss_pred HHHHhcccccchhhHHHHHHHHhhhhheeecc---c---------e---e----hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019264 123 MAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---I---------H---F----NIVGTLYQVTGIVAEALRLVLTQVLL 183 (343)
Q Consensus 123 ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~---~---------~---~----~~~G~~~~l~s~~~~a~~~v~~~~~~ 183 (343)
.+++++|+|+|.+|+.++.+..+|+++....+ . + . -..|+.+...+.+..|.-.+++++..
T Consensus 108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y 187 (330)
T KOG1583|consen 108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY 187 (330)
T ss_pred HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876531 1 0 0 14699999999999999999999999
Q ss_pred hhCCCCCChHHHHHhhhHHHHHHHHHHHH--------hhccCch--h--hccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019264 184 QKKGLTLNPITSLYYIAPCSFVFLFVPWY--------LLEKPMM--E--VSQIQFNFWIFFSNALCALALNFSIFLVIGR 251 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~--~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (343)
||++ -|+-|.++|....+.+..+...- ....+.. + ....+..++.+..+++..+++.-..+.+..+
T Consensus 188 ~kyG--Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te 265 (330)
T KOG1583|consen 188 QKYG--KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTE 265 (330)
T ss_pred HHhc--CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhce
Confidence 8854 57889999999988876543210 0000100 0 0114455677888889899888888888999
Q ss_pred hhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 252 TGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 252 ~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
+++.+++++-+++..++.++|.+.|.+ ++|+.+|+|..++..|.++|....
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~N-pft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFEN-PFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999954 599999999999999999997554
No 32
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=1.9e-17 Score=138.44 Aligned_cols=266 Identities=12% Similarity=0.108 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCC-CccChhhhhHHhhhHHHHHHHHHHHhh
Q 019264 20 ILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP-VKMTFEIYATCVVPISAFFASSLWFGN 98 (343)
Q Consensus 20 ~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (343)
+..+.++.+..|... ++ |....-.|+++--+...+... .++..- -+...| +.++.-|+....+..+.+
T Consensus 47 ~ff~~~~vv~t~~~e------~~-p~e~a~~r~l~~mlit~pcli-y~~~~v~gp~g~R---~~LiLRg~mG~tgvmlmy 115 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE------ND-PMELASFRLLVRMLITYPCLI-YYMQPVIGPEGKR---KWLILRGFMGFTGVMLMY 115 (346)
T ss_pred HHHhhHHHhhhhhhc------cC-hhHhhhhhhhhehhhhheEEE-EEeeeeecCCCcE---EEEEeehhhhhhHHHHHH
Confidence 555555555555443 34 888888886543333332221 111111 111222 222333555555777899
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc-----c---------eehHHHHHH
Q 019264 99 TAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE-----I---------HFNIVGTLY 164 (343)
Q Consensus 99 ~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~-----~---------~~~~~G~~~ 164 (343)
+|++|+|.+.+.++..++|++|.++++.++|||.++.+.++..+.+.|+++++.+. . +.+..|...
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~a 195 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVA 195 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHH
Confidence 99999999999999999999999999999999999999999999999999987532 1 234568888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHH
Q 019264 165 QVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFS 244 (343)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 244 (343)
++.+++.-|.-.++.|++-|+ .|....+.|....+.+..++........... .....+|+++.-|+.++..+..
T Consensus 196 ai~s~lf~asvyIilR~iGk~----~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP--~cgkdr~l~~~lGvfgfigQIl 269 (346)
T KOG4510|consen 196 AISSVLFGASVYIILRYIGKN----AHAIMSVSYFSLITLVVSLIGCASIGAVQLP--HCGKDRWLFVNLGVFGFIGQIL 269 (346)
T ss_pred HHHhHhhhhhHHHHHHHhhcc----ccEEEEehHHHHHHHHHHHHHHhhccceecC--ccccceEEEEEehhhhhHHHHH
Confidence 888888888877888876444 4555555666666665544433332221111 1223345555667778888887
Q ss_pred HHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 245 IFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 245 ~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
....+++--|...++..+..-+++.++.+++||+. +|+++|.|+++++...++....|
T Consensus 270 lTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~-Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 270 LTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW-PTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC-ChHHHhhceeeeehhHHHHHHHH
Confidence 77778887777889999999999999999999888 99999999999888777655443
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.63 E-value=1.5e-16 Score=132.34 Aligned_cols=248 Identities=14% Similarity=0.215 Sum_probs=187.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH
Q 019264 40 NFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVA 119 (343)
Q Consensus 40 ~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 119 (343)
+.+-|..-+++.+..-+++--++.. +|+ +..+.. +++.+..++...-++++...|.||++....+.+.+-..+.
T Consensus 44 ~iN~Pt~QtFl~Y~LLalVY~~~~~-fR~-~~~~~~----~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~ 117 (336)
T KOG2766|consen 44 GINAPTSQTFLNYVLLALVYGPIML-FRR-KYIKAK----WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPC 117 (336)
T ss_pred cCCCccHHHHHHHHHHHHHHhhHHH-hhh-HHHHHH----HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHH
Confidence 4556877777777644443333332 222 112222 4567777888888999999999999999999999999999
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc--------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 019264 120 TFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI--------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLN 191 (343)
Q Consensus 120 ~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~ 191 (343)
+++++|+++|.|.++.++.|+.++++|+.+++..|. +....|+++.++++-+||..++..+.+.++ .|
T Consensus 118 v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn----~d 193 (336)
T KOG2766|consen 118 VLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN----AD 193 (336)
T ss_pred HHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhc----Cc
Confidence 999999999999999999999999999998887652 233689999999999999999998888776 68
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhh
Q 019264 192 PITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIAL 271 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~ 271 (343)
..+.+....++++++..+. +..|......-.|...........++-+..+-..-.++|..||+...+--......++++
T Consensus 194 ~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i 272 (336)
T KOG2766|consen 194 RVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI 272 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH
Confidence 8999999999999988777 555655444333443333333344444444444455788888887777777777777777
Q ss_pred hhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 272 STVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 272 ~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
..||.. .+|.-.+..+.+..|.++|.-
T Consensus 273 --~~FgYh-v~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 273 --RTFGYH-VDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred --HHHhcc-hhhhhHHHHHHHHHhhEEeec
Confidence 567666 999999999999999999943
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.33 E-value=8.7e-12 Score=97.05 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=95.6
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH-HHHHHHHhhhhhcccc
Q 019264 27 ILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF-FASSLWFGNTAYLHIS 105 (343)
Q Consensus 27 ~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~ 105 (343)
...+|...+ +++ |...+++|+..+.+ +.......++.+..+.++++ +......+.+ ...+..+.+.|+++++
T Consensus 7 ~~~~k~~~~----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 7 SVFSKKLLK----KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQ-WLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred HHHHHHHhc----cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhh-hhhhhHhhccceehHHHHHHHHHHhcc
Confidence 457788888 687 99999999999886 44444444433334555555 3444555555 5789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 106 VAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 106 ~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
++.++++.++.|+++.+++++++||++++.++.|+.++++|+.++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.24 E-value=1.1e-10 Score=87.35 Aligned_cols=130 Identities=15% Similarity=0.075 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCC-ccChhhhhHHhhhHHHHHH
Q 019264 13 YLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV-KMTFEIYATCVVPISAFFA 91 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 91 (343)
++....|... .++.|..++ +.+ |.+-++.|.++...++..+....++.+.. ..+.|. +..+...|+.-+
T Consensus 9 LLsA~fa~L~----~iF~KIGl~----~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~-~lflilSGla~g 78 (140)
T COG2510 9 LLSALFAGLT----PIFAKIGLE----GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKS-WLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHH----HHHHHHhcc----ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcce-ehhhhHHHHHHH
Confidence 3344444444 557899999 888 99999999998888877776665544332 234444 556666777788
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 92 SSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 92 ~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
.+..+++.|++--++|...=+..++|+++.+++++++|||++..+|+|+.++.+|++++..
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 8999999999999999999999999999999999999999999999999999999987653
No 36
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.23 E-value=1e-10 Score=100.69 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=128.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc-------------------c--------e
Q 019264 104 ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE-------------------I--------H 156 (343)
Q Consensus 104 ~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~-------------------~--------~ 156 (343)
++++.....++..|+++++.++.+.+||++..++++..+...|+......| . +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 467788899999999999999999999999999999999999987422211 0 2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchh----hccchhhHHHHH
Q 019264 157 FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME----VSQIQFNFWIFF 232 (343)
Q Consensus 157 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~ 232 (343)
....|....+.+..+.++..++.++..|++ +...+.-......++.+.........+..... ...++...|..+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG--DTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC--CCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 346677778888888899999999875543 22222212222222222111111111111111 122333344333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHH
Q 019264 233 SNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (343)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~ 299 (343)
.. ......+..+++++.|+.+.++...++++++.++|.++||++ +|..+++|..+++.|+.+|
T Consensus 160 ~~---~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~-ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 LL---NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK-ISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HH---HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHeeeEeC
Confidence 22 233333466779999999999999999999999999999766 9999999999999998765
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.23 E-value=4.7e-11 Score=89.33 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHH
Q 019264 161 GTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALA 240 (343)
Q Consensus 161 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
-.+++++|++++++..+..|-..++ .||...+...+.....++....+.........+-.+..+..++++++.+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHH
Confidence 3679999999999999999877665 678888887777777766655544433322211223344557778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 241 ~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
.+.++|.+++.-.++.+..+.-+.+++++++|++++||+ +|..+++|+++|.+|.++.+
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~-ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER-LSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999988 99999999999999987643
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.15 E-value=3e-10 Score=88.31 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019264 170 VAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVI 249 (343)
Q Consensus 170 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 249 (343)
++||.+.+..|+..++ .|+.....+....+.+ +++.....+.......+.....+....+.+.....+...+.++
T Consensus 1 ~~~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 4688899999988765 7899999999999887 5555554443322222223333344444454566777788899
Q ss_pred hhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 250 GRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 250 ~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
++.++...+++..++|+++.++++++++|+ ++..+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~-~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGER-PSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887 99999999999999998753
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.13 E-value=3.6e-10 Score=86.44 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC--CccChhhhhHHhhhHHHHH-HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 019264 49 MIHMGFSGVVAFFLVRVFKVVSP--VKMTFEIYATCVVPISAFF-ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAV 125 (343)
Q Consensus 49 ~~r~~~~~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~ 125 (343)
.+|+..+.+++..+....++.+. +..+++. +......+++. ..++.++++|+++.| +.+..+.+++|+++++++.
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKP-WLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 46888887777666554332211 1122222 33444445554 478999999999999 5888999999999999999
Q ss_pred HhcccccchhhHHHHHHHHhhhhheeeccce
Q 019264 126 LCGTDKARLDVFLNMVLVSVGVVISSYGEIH 156 (343)
Q Consensus 126 l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~ 156 (343)
+++|||+++.++.++.++++|++++..+|.+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999998887654
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=90.62 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=151.3
Q ss_pred ChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc
Q 019264 75 TFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE 154 (343)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~ 154 (343)
+.|..+.+..|.+++..+.++.+..|++.++++.++.+.++.-.|+.+++++.+|+|+...++++.++++.|++++.+.|
T Consensus 48 nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 48 NIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred eeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 33444566678888899999999999999999999999999999999999999999999999999999999999998755
Q ss_pred --ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHH---H-HHHHHHh-hcc-Cchhhccchh
Q 019264 155 --IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFV---F-LFVPWYL-LEK-PMMEVSQIQF 226 (343)
Q Consensus 155 --~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-l~~~~~~-~~~-~~~~~~~~~~ 226 (343)
...++.|+.++..|+...|+|-++-|+...+...+ +...+.+-.+.. + .+|+... +.+ ..+. ...+
T Consensus 128 N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G----daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q--sFA~ 201 (290)
T KOG4314|consen 128 NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFG----DAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ--SFAA 201 (290)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch----hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH--HHhh
Confidence 45678999999999999999999999887654322 112222222221 1 1222211 111 1111 0111
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 227 NFW-IFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 227 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
..| .+...+......++.....+..+.|...|+=....-.....+..+.- |...+...+.|..++..|.++.-...
T Consensus 202 ~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q-~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 202 APWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQ-ELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred CCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHH-HHHHHHHHHHHHHHHHHhHHheeccc
Confidence 111 12111222223333333446666777766655555555566666555 65599999999999999998765443
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.03 E-value=1.1e-07 Score=82.35 Aligned_cols=207 Identities=18% Similarity=0.164 Sum_probs=156.0
Q ss_pred hHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhH----HHHHHHHhhhhheeecc
Q 019264 80 ATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVF----LNMVLVSVGVVISSYGE 154 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~----~~~~~~~~G~~l~~~~~ 154 (343)
+...+..|++...++..++.|+++..+|.+.=+. .++-+.+.+.++++++|..+..++ .+++++++|+.+....|
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 5566778999999999999999998888776555 578888999999999997665554 58889999999988754
Q ss_pred ce--------ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchh
Q 019264 155 IH--------FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQF 226 (343)
Q Consensus 155 ~~--------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (343)
.+ ....|++..+++.+.|..|.+..|-. +.|++...+-+++...+..+......+.+. ...
T Consensus 125 ~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~-----~~k 193 (269)
T PF06800_consen 125 KKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAIGMLIGAFIFNLFSKKPF-----FEK 193 (269)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHHHHhhcccccc-----ccc
Confidence 32 23569999999999999999987652 267777776554444433333333222111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccc----hhhHHHHHHHHHHHHH
Q 019264 227 NFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTIT----GLNIIGYAIALCGVVM 298 (343)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s----~~~~~G~~lil~g~~~ 298 (343)
..|.-+.++++-...+.+++...++.+..+.=.+.-+..+++.+.|.+++||. -+ ...++|.++++.|.++
T Consensus 194 ~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~-Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEK-KTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEec-CchhhHHHHHHHHHHHHHhhhc
Confidence 24455667777777888888889999999999999999999999999999987 45 3466788888888754
No 42
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.86 E-value=1.6e-07 Score=82.84 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH
Q 019264 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF 89 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
...+...+.|... ....|...+ +++.+ +.....+|+.++.+++.+.....+. ..+.+.++ +...+..+++
T Consensus 131 ~~~l~a~~~~a~~----~~~~k~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~ 200 (260)
T TIGR00950 131 LLGLGSGISFALG----TVLYKRLVK--KEGPE-LLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQ-WGALLYLGLI 200 (260)
T ss_pred HHHHHHHHHHHHH----HHHHhHHhh--cCCch-HHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHH-HHHHHHHHHH
Confidence 3444444445444 446787776 22322 4455567888888877766543322 22233444 3334444544
Q ss_pred -HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhh
Q 019264 90 -FASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGV 147 (343)
Q Consensus 90 -~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~ 147 (343)
......++++++++.+++.++.+.++.|++++++++++++|+++..++.|..+++.|+
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999999999999999999999999999999986
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.85 E-value=1.2e-07 Score=85.29 Aligned_cols=138 Identities=11% Similarity=0.127 Sum_probs=106.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchh---hccchhhHHHHH
Q 019264 156 HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME---VSQIQFNFWIFF 232 (343)
Q Consensus 156 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~ 232 (343)
+....|.++.++++++|+...+..|.. . +++|.++.++...++.+.+++......+.... .... .......
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y----YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTP-QKIFMLA 77 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCH-HHHHHHH
Confidence 345689999999999999999999753 2 27899999999999988776655433211110 0111 1122233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 233 SNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
.+++.....+.+.++.+++.++..+++..+..|++..++++++++|+ ++..+++|+++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~-~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER-FRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 55565666777889999999999999999999999999999999887 99999999999999998653
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.82 E-value=1.6e-07 Score=82.72 Aligned_cols=134 Identities=15% Similarity=0.165 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCc-----hhhccchhhHHHHHHH
Q 019264 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-----MEVSQIQFNFWIFFSN 234 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 234 (343)
.|.++.++++++|+...+..|.. .+ ++|.++.++....+.+.+++......... ................
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP----LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc----CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 48899999999999999999863 32 79999999999998877665543322111 1000111223345556
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHH
Q 019264 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~ 299 (343)
+++....+.+.+++++++++.++++..++.|+++.++++++++|+ ++..+++|.++.++|+.+.
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek-~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER-ISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 666667777888899999999999999999999999999999888 9999999999999998764
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.80 E-value=1.3e-07 Score=84.50 Aligned_cols=131 Identities=10% Similarity=0.039 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhc-cCchhhccchhhHHHHHHHHHHHHH
Q 019264 162 TLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLE-KPMMEVSQIQFNFWIFFSNALCALA 240 (343)
Q Consensus 162 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
+++.+++++++|.+.+..|+..+++ ++ ...+....+.+.+.|...... ...... .....+...+.+++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~----~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE----PD--FLWWALLAHSVLLTPYGLWYLAQVGWSR-LPATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch----hH--HHHHHHHHHHHHHHHHHHHhcccCCCCC-cchhhHHHHHHHHHHHHH
Confidence 5688999999999999999775541 23 235555556666666554421 111111 111223345556666777
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 241 ~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
.+.+.+.+.++.++...+.+.+..|+++.+++++++||+ ++..+++|+++++.|+.+..
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~-~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET-LSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh
Confidence 777888899999999999999999999999999999887 99999999999999998754
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.60 E-value=1.7e-06 Score=79.54 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCc-hhhccchhhHHHHHHHHHHH
Q 019264 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-MEVSQIQFNFWIFFSNALCA 238 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 238 (343)
.-...++..-++|+.+.++.|..++. ++++....++-...+.+.+++..+..+... .....+.....+.+ .++++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~---G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l-~g~~g 88 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK---GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGL-LGFLG 88 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH-HHHHH
Confidence 34566778889999999999998754 378888999999999988888776554321 11112333233333 44444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhc------cCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 239 LALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVI------FPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~------~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
+.++...+..+++++|..++++.++.|+++.++++++ ++|+ ++..+++|+++.++|+.+...
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er-~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKER-SSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 4555567788999999999999999999999999999 6787 999999999999999987543
No 47
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.48 E-value=3.2e-06 Score=64.07 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
++++....+...+++..|.+.+..+-++.|+++.+++++++|||+++.+++++.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999999999999999999999999999999998764
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.47 E-value=9.7e-06 Score=72.84 Aligned_cols=121 Identities=11% Similarity=0.046 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH-HHHHHHHhhhh
Q 019264 22 LSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF-FASSLWFGNTA 100 (343)
Q Consensus 22 ~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 100 (343)
+.....+..|...+ +.+ |.... +..+++.+++.+...... .....++.. +...+..+++ -.+.+.+++++
T Consensus 159 ~~a~~~v~~r~~~~----~~~-~~~~~-~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~l~lgv~~t~~~~~l~~~~ 229 (293)
T PRK10532 159 CWAIYILSGQRAGA----EHG-PATVA-IGSLIAALIFVPIGALQA--GEALWHWSI-LPLGLAVAILSTALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHHHHHhc----cCC-chHHH-HHHHHHHHHHHHHHHHcc--CcccCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556676655 445 65554 444555555555443221 111222222 2223344444 45577899999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 101 YLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 101 l~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
+++.+++.++++.+++|++..++++++++|+++..+++|..++++|++...
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887654
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.47 E-value=7.7e-06 Score=73.46 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH-HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 019264 44 PITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF-FASSLWFGNTAYLHISVAFIQMLKALMPVATFF 122 (343)
Q Consensus 44 p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ 122 (343)
+...+.+++.++...+.+.............+.+. +..++..+++ ......++++++++.+++.++++..+.|++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSG-FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 45667888888877766554332211111123333 3344444543 456788999999999999999999999999999
Q ss_pred HHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 123 MAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 123 ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
+++++++|+++..+++|..+++.|+.+...
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654
No 50
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.33 E-value=2.9e-05 Score=69.79 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=65.6
Q ss_pred cChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 74 MTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
.+++. +..++..++..+..+.++++++++.+++.++++.++.|++..++++++++|+++..+++|..+++.|+.+...
T Consensus 210 ~~~~~-~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 210 FSLPA-IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 44444 3334445555566889999999999999999999999999999999999999999999999999999876643
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.32 E-value=3.3e-05 Score=71.10 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC-hHHHHHhhhHHHHHHHHHHHHhhc--cCchhhccchhhHHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLN-PITSLYYIAPCSFVFLFVPWYLLE--KPMMEVSQIQFNFWIFFSNA 235 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 235 (343)
+.-..+++.--.+...++++.|..++. .+ |+++..++...+.+...+.....- .+.. ......+..++..+
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~llp~g 121 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATGFRKIPRI--KSLKLFLKNFLPQG 121 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHH
Confidence 333444444445556668888888876 56 999999998888776544432211 1111 11122233344556
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 236 LCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
+++...+...+..+++++++..+++..++|+++++++.++++|+ ++..+++|+++++.|+.+..
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek-~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQF-LNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHhee
Confidence 66655555566789999999999999999999999999999888 99999999999999998754
No 52
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.30 E-value=9.3e-06 Score=72.70 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
.+-+.+..+....+.|+.+.|.+..+=+.+..-++..+++..++|||+++.++.|..+++.|..++..
T Consensus 55 ~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 55 IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 33345677888999999999999999999999999999999999999999999999999999987654
No 53
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.30 E-value=5.7e-05 Score=60.79 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCc---------cC-hhhhhHH
Q 019264 16 LLIYILLSSGVILYNKWVLSPK---YFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVK---------MT-FEIYATC 82 (343)
Q Consensus 16 ~~~~~~~~~~~~~~~k~~l~~~---~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~---------~~-~~~~~~~ 82 (343)
.+...+.........|..++++ ..+.+ |..+.......+.+++.+.....+..+..+ .+ ..+....
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 3444444445555667777641 24666 888888888888888777765544322111 01 2232445
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
++..+++....+...+..++++++-+.+++.....+.+.++++++++|+++..++.|+.++++|...-
T Consensus 84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 55667777889999999999999999999999999999999999999999999999999999998764
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.26 E-value=1.3e-05 Score=72.40 Aligned_cols=138 Identities=12% Similarity=-0.003 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccCh---------hhhhHH
Q 019264 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTF---------EIYATC 82 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~---------~~~~~~ 82 (343)
..+++++..++........|...+ +.+.+ |..++.+++..+.+.+.+........+.....+ ......
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMT--IKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 333344444444445556677665 22455 888999999888887777654332111000000 000111
Q ss_pred hhhHHH-HHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 83 VVPISA-FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
.+..+. ++...+...+.+++++++..+++.....|+++.++++++++|+++..+++|..++++|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 112222 3333445677899999999999999999999999999999999999999999999999877543
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.23 E-value=8.6e-05 Score=66.91 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-----CCccChhhhhHHhhhHHH-HHHHHHHHhh
Q 019264 25 GVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVS-----PVKMTFEIYATCVVPISA-FFASSLWFGN 98 (343)
Q Consensus 25 ~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 98 (343)
..++.+|...+ +.+-+.......+.+.++.+............. ....+.+. +..++..++ .-.....+++
T Consensus 157 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~i~~t~~~~~l~~ 233 (299)
T PRK11453 157 CGNIFNKKIMS--HSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTT-ILSLMYLAFVATIVGYGIWG 233 (299)
T ss_pred HHHHHHHHHhc--ccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33445666544 111111344555666655443333222211110 01233344 334444444 4455888999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 99 TAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 99 ~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
.++++.+++.++.+..++|++..++++++++|+++..+++|..++++|+.+...+
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999876543
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.20 E-value=0.0025 Score=57.89 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=137.3
Q ss_pred hHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhccccc-------chhhHHHHHHHHhhhhhee
Q 019264 80 ATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKA-------RLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~-------s~~~~~~~~~~~~G~~l~~ 151 (343)
+...+..|++...++..+..++++..+|...-+. .++-+...+...++++|-. -.....+++++++|+++..
T Consensus 73 ~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 73 LLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999887665 4788888888888888633 2235688999999999877
Q ss_pred e----ccc---------eehHHHHHHHHHHHHHHHHHH-------HHHHHHhhhCCCCCChHHHHHhhhH---HHHHHHH
Q 019264 152 Y----GEI---------HFNIVGTLYQVTGIVAEALRL-------VLTQVLLQKKGLTLNPITSLYYIAP---CSFVFLF 208 (343)
Q Consensus 152 ~----~~~---------~~~~~G~~~~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 208 (343)
. .|. .....|+++++++.+.++.|. ...+... . .+.++.....-+.. .+.+..-
T Consensus 153 ~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~--~g~~~~~~~lp~~~~~~~G~~~~n 229 (345)
T PRK13499 153 RAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-A--LGVDPLYAALPSYVVIMGGGAITN 229 (345)
T ss_pred HhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-h--cCCCchHHHHHHHHHHHHHHHHHH
Confidence 6 332 123689999999999999999 3333211 1 12444433333222 3333222
Q ss_pred HHHHhh---ccCch----hhccc----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---Hh-hhhhHHhhhhhh
Q 019264 209 VPWYLL---EKPMM----EVSQI----QFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRV---AG-VLKDWILIALST 273 (343)
Q Consensus 209 ~~~~~~---~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si---~~-~~~pv~~~~~~~ 273 (343)
+..-.. ..... ..... .....+.+++++.-+..++.+...-++.+.....+ +. .+.-+++.+.|.
T Consensus 230 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi 309 (345)
T PRK13499 230 LGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL 309 (345)
T ss_pred HHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh
Confidence 111110 11111 11111 12223345667776777777776666664443333 33 555578888888
Q ss_pred hccCCCccc------hhhHHHHHHHHHHHHHHHH
Q 019264 274 VIFPESTIT------GLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 274 ~~~~e~~~s------~~~~~G~~lil~g~~~~~~ 301 (343)
+ +||. =+ ...++|++++++|..+...
T Consensus 310 ~-lkE~-K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 310 V-LKEW-KGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred h-hhhc-cCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 4 8776 33 6779999999999887654
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.11 E-value=9.9e-05 Score=57.35 Aligned_cols=120 Identities=10% Similarity=0.012 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHH
Q 019264 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
.|.++.+.+.++.+...++.|+-+++.+. .+. ... . ...+ .. ..+ | ....++.+ ++..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~---~~~-~-~~~~----~~-~~~-p-------~~~i~lgl---~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSH---AWD-F-IAAL----LA-FGL-A-------LRAVLLGL---AGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccc---hhH-H-HHHH----HH-Hhc-c-------HHHHHHHH---HHHH
Confidence 37889999999999999999987765321 111 110 0 0000 00 000 0 01122222 2233
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhh--ccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTV--IFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~--~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
.....+..++++.+...+..+....++...+.++. ++||+ +|+.+++|++++++|+++.++.
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~-ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNET-FSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhccC
Confidence 34445667899999999998888888778777775 78787 9999999999999999997643
No 58
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.00 E-value=3.1e-06 Score=71.10 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=157.1
Q ss_pred ccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhh----HHHHHHHHhhh
Q 019264 73 KMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDV----FLNMVLVSVGV 147 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~----~~~~~~~~~G~ 147 (343)
..+++. +..-+..|++...++..++.|++++.+|.+.=+. .++-+-+.+++++.++|-.+..+ ..+++++++|+
T Consensus 53 ~~T~~~-~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 53 ELTLTI-FIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred ccchhh-HHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhh
Confidence 344444 4556677888999999999999999888876554 46888899999999999777665 36888899999
Q ss_pred hheeeccce--------ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCch
Q 019264 148 VISSYGEIH--------FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMM 219 (343)
Q Consensus 148 ~l~~~~~~~--------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 219 (343)
.+..+.|.+ ..-.|+...+.|.+.|..|.++.+.. +.|.+....-++.-..+..+.....-++..
T Consensus 132 ~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f------~v~g~saiLPqAiGMv~~ali~~~~~~~~~- 204 (288)
T COG4975 132 YLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF------DVDGLSAILPQAIGMVIGALILGFFKMEKR- 204 (288)
T ss_pred eEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc------cccchhhhhHHHHHHHHHHHHHhhcccccc-
Confidence 998887642 12468988899999999998887654 256676666555444443333333332222
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchh----hHHHHHHHHHH
Q 019264 220 EVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGL----NIIGYAIALCG 295 (343)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~----~~~G~~lil~g 295 (343)
.+...|+-...++.-...|...+.+-++.+-.+.=.+.-+--+++++-|.++++|+ -|.. .++|++++++|
T Consensus 205 ----~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ek-KtkkEm~~v~iGiilivvg 279 (288)
T COG4975 205 ----FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEK-KTKKEMVYVIIGIILIVVG 279 (288)
T ss_pred ----hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEecc-CchhhhhhhhhhHHHHHHH
Confidence 22345566667777777788888888888877777777788888999999999887 5544 46788888888
Q ss_pred HHHHHH
Q 019264 296 VVMYNY 301 (343)
Q Consensus 296 ~~~~~~ 301 (343)
..+...
T Consensus 280 ai~lg~ 285 (288)
T COG4975 280 AILLGI 285 (288)
T ss_pred hhhhhe
Confidence 876543
No 59
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.93 E-value=0.00036 Score=60.57 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchh--hccchhhHHHHHHHH
Q 019264 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME--VSQIQFNFWIFFSNA 235 (343)
Q Consensus 158 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 235 (343)
+..|+++++.+-+.|+.--.+.|-+ ++ .++.++..+-.+++.++++............ ...-+..+.....++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 4579999999999999988888765 33 6899999999999998876655544332221 111223345566666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 236 LCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
......+..+.|+..+-....+|.=-+++|.+.+++|.++++|+ +|..|++..++..+|+..-.+
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr-ls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER-LSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHH
Confidence 66666666677889998999999999999999999999999988 999999999999999976443
No 60
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.92 E-value=0.00021 Score=54.42 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
....+..++++.++.++ .++....+.|+++.+++.++++|+ ++..+++|.+++++|+.+....+
T Consensus 45 ~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er-~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 45 FGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKER-LSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhhh
Confidence 33556667778899985 777889999999999999999988 99999999999999999876554
No 61
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.91 E-value=8.1e-05 Score=57.82 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=63.8
Q ss_pred HhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHhhhhheeec
Q 019264 82 CVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVL--CGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l--~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
.+....++++....+++.+++..|++.+.-+.+..++.+.+.++. ++||++++.+++|+.++++|+.++..+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 344555688889999999999999999999999999889888885 899999999999999999999987654
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00011 Score=64.46 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
++.+-+.+..+-...+.|+.+.|++..+-+.+++.+..++++..++|||+++...+|..++++|-.+++..
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 34455577889999999999999999999999999999999999999999999999999999999987764
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.82 E-value=0.0005 Score=62.08 Aligned_cols=129 Identities=11% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019264 172 EALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGR 251 (343)
Q Consensus 172 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (343)
+..+.++++++.+++.....+..+++.+.....+...+.......+.... . .+.-....+++........+.++++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRK--I--PLKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCc--C--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456677887766432224777777777777765554443333111111 1 1112223345555556667778999
Q ss_pred hhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 019264 252 TGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 252 ~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
.+-.+..+....+++..++++.++++++ .+..++++.+++.+|+.+....+.+
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~-y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKR-YSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHhhHheeeecccc
Confidence 9999999999999999999999999776 9999999999999999998766543
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.74 E-value=0.0014 Score=49.53 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 244 SIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 244 ~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
....++++.+...+...-.+.++.+.+.|+++|||+ +|+.+++|++++++|+.+..
T Consensus 53 ~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~-ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 53 LWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP-VSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 345568999999998888899999999999999888 99999999999999998754
No 65
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.73 E-value=0.00049 Score=61.67 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHhhhHHHHHHHHHHHhhhhhc-ccchhHHHHHHHHHHHHHHHHHHHhcccccchhhH----HHHHHHHhhhhhee
Q 019264 81 TCVVPISAFFASSLWFGNTAYL-HISVAFIQMLKALMPVATFFMAVLCGTDKARLDVF----LNMVLVSVGVVISS 151 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~----~~~~~~~~G~~l~~ 151 (343)
+.....|+.....+.++..+.+ +.+++.+.++.+..|+...+++++++||+.+++++ +|.++++.|+.+..
T Consensus 212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 3344477778888889999999 99999999999999999999999999999999999 99999999988764
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.71 E-value=0.002 Score=50.83 Aligned_cols=132 Identities=18% Similarity=0.343 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHH
Q 019264 162 TLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALAL 241 (343)
Q Consensus 162 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
.++++.+..+-+.+.....++.++-+ +|+...+.....+.+.+....+..++++.. ......|....+++++...
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g---s~~~as~i~~~~G~i~~~i~~~~~~~~~~~--~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG---SPLVASFISFGVGFILLLIILLITGRPSLA--SLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHHhcccccc--hhccCChHHhccHHHHHHH
Confidence 46788888888888888888766521 488888888888888887777666654222 1222223333478888777
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhHHh-hhhhhh-cc--CCCccchhhHHHHHHHHHHHHH
Q 019264 242 NFSIFLVIGRTGAVTIRVAGVLKDWIL-IALSTV-IF--PESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 242 ~~~~~~~~~~~~a~~~si~~~~~pv~~-~~~~~~-~~--~e~~~s~~~~~G~~lil~g~~~ 298 (343)
-.+....+++.++.........-.+.+ ++++.+ ++ ...++++..++|.+++++|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777788899999999888887777666 444543 22 2345999999999999999863
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.67 E-value=0.0013 Score=59.64 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHH
Q 019264 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
.+.+++-.-++|-+..++....+.++ +... |....+.....-.+...+......+...........+|--++-+++=.
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~-P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv 90 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNI-PTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV 90 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccC-cHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence 34555555555555556655555444 3443 333334433333333333333322211111112233444444467778
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
..++....+.++++.+.+.++....-++++++|+++++++ .++.|++|.++++.|+.+.....
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~r-y~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRR-YSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhheeeec
Confidence 8889999999999999999999999999999999999887 99999999999999998765444
No 68
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.67 E-value=0.0024 Score=56.76 Aligned_cols=139 Identities=15% Similarity=0.097 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCA 238 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (343)
..+....+...+.|+......++..+. ..+......+......+...+... .+. ...........+..+.+.+..
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLLL-LEP-RGLRPALRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHHH-hhc-ccccccccchHHHHHHHHHHH
Confidence 457778888889999888888776443 134444445455555544222221 111 001111111344555566666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhh-hccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 239 LALNFSIFLVIGRTGAVTIRVAGVLKDWILIALST-VIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~-~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
...+..++..++++++...+......|++..+++. ++++|+ ++..++.|..+.+.|+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER-LSLLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHhHHheecCC
Confidence 66777788889999999999999999999999996 666888 99999999999999998876543
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.65 E-value=0.001 Score=50.72 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
.....++++.+.++...+++++|.+.+.-+- ...-+.+.+.++++++|++++.+++++.++++|++.+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3455678888999999999999999998885 6899999999999999999999999999999999877543
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.48 E-value=0.0025 Score=48.02 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 85 PISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
...+++..+..+...+++.+|.+.+.-+- ....+.+.+.+++++||++++.+++++.++++|++.+...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44567888888999999999999998885 4789999999999999999999999999999999987543
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.44 E-value=0.003 Score=47.07 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHH-HHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~-~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
....+++..+.++...+++.+|.+.+..+-. ...+.+.+.+++++||++++.+++++.++++|++.+..
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3446678889999999999999999877765 78999999999999999999999999999999987643
No 72
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.0022 Score=47.30 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
.....+++..+..+.-.|++++|.+.+.-+- ....+.+.+.++++++|+.+..+++++.++++|++.+..
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3445667888889999999999999876655 578999999999999999999999999999999987654
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.30 E-value=0.0097 Score=44.62 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHH-HHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~-~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
....+++..+..+...+++++|.+.+..+-. ...+.+.+.+++++||++++.+++++.++++|++.+
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3445677788889999999999999877665 788999999999999999999999999999999865
No 74
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.14 E-value=0.02 Score=48.96 Aligned_cols=131 Identities=9% Similarity=-0.010 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHH
Q 019264 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF 89 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
.....+.+.-+.++...++..|.+-. .-+ .-.-+..-+.+++++.+++..... .+.-.++.. ...-+..+++
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~----~~~-g~~g~a~gm~vAaviv~Pig~~~a--g~~l~~p~l-l~laLgvavl 218 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGR----AEH-GTAGVAVGMLVAALIVLPIGAAQA--GPALFSPSL-LPLALGVAVL 218 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcc----cCC-CchHHHHHHHHHHHHHhhhhhhhc--chhhcChHH-HHHHHHHHHH
Confidence 34445555555666666666665553 122 223334445666666666543211 111122222 2222333443
Q ss_pred H-HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhh
Q 019264 90 F-ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVV 148 (343)
Q Consensus 90 ~-~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~ 148 (343)
. ...+.+...++...|...+.++.++.|.+..+.++++++|.++..||.++..++.+.+
T Consensus 219 SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 219 SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3 3366788899999999999999999999999999999999999999999988887765
No 75
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.028 Score=44.40 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCA 238 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (343)
....+.++.+..+-+.+.-...++.+.-+ +|.-..+.....+.+.+.......+.........+. .|....+++++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~---spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~-pwW~~~GG~lG 79 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG---SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASA-PWWAWIGGLLG 79 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCC-chHHHHccchh
Confidence 45677888888898988888888765521 577777777777777776665555544332211222 23333455777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhhHHh-hhhhhhcc---CCCccchhhHHHHHHHHHHHHHHH
Q 019264 239 LALNFSIFLVIGRTGAVTIRVAGVLKDWIL-IALSTVIF---PESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~si~~~~~pv~~-~~~~~~~~---~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
..+-........+.++++.-.+...-..+. ++++.+=+ ...+++...++|++++++|+++.+
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 666666667788888877766655555444 44443333 234699999999999999965543
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.00 E-value=0.0099 Score=45.39 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=41.0
Q ss_pred HHhhhhhHH-HHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 248 VIGRTGAVT-IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 248 ~~~~~~a~~-~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
++++.+-.. .++..-+-.+.+++.|+++|||+ +|+.+++|+.++++|++..+...
T Consensus 50 al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~-~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 50 AVKKIALGVAYALWEGIGILFITLFSVLLFDES-LSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhcCC
Confidence 355554332 23444566777788999999887 99999999999999998875443
No 77
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.00 E-value=0.0026 Score=55.16 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHH
Q 019264 161 GTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALA 240 (343)
Q Consensus 161 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
|.+.++.|+++++...+=.||. .+-|++..+++......+.-....+..+.+.+. .+..+++.+-..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-----~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~--------p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-----DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFY--------PWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-----cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcce--------eHHHhhhhhhhc
Confidence 5677889999999877776654 124777777766555555444444444433321 123445555555
Q ss_pred HHHHHHHHHhhhhh-HHHHHHhhhhhHHhhhhhhh-ccCCC----ccchhhHHHHHHHHHHHHHHHHhhhh
Q 019264 241 LNFSIFLVIGRTGA-VTIRVAGVLKDWILIALSTV-IFPES----TITGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 241 ~~~~~~~~~~~~~a-~~~si~~~~~pv~~~~~~~~-~~~e~----~~s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
.+....-.++..+= .-..+.+...-+.+...|-+ +||.+ .-++...+|++++++|..+|...|..
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 55555555665542 33445555566666666644 55432 25588999999999999998776543
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.98 E-value=0.052 Score=42.77 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHh
Q 019264 18 IYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFG 97 (343)
Q Consensus 18 ~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (343)
.-+.....+...|-..-+ ..+.|+.-++.-+.++.+.+..+....+..+.++.+.. -+.....|++-.......
T Consensus 8 ~aG~~i~~q~~~N~~L~~----~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~--p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 8 LAGALIALQAAFNGQLGK----ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSV--PWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccC--ChHHhccHHHHHHHHHHH
Confidence 333333344445544444 23348999999999888887766655543322222211 234444777777888888
Q ss_pred hhhhcccchhHHHHHHHH-HHHHHHHHHHH----hcccccchhhHHHHHHHHhhhhh
Q 019264 98 NTAYLHISVAFIQMLKAL-MPVATFFMAVL----CGTDKARLDVFLNMVLVSVGVVI 149 (343)
Q Consensus 98 ~~al~~~~~~~~~ii~~~-~Pv~~~~ls~l----~~~ek~s~~~~~~~~~~~~G~~l 149 (343)
..+...+.++....+.-+ +-+..++++.+ .-|+++++.+.+++.++++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 899999988888877754 67777777775 35678999999999999999864
No 79
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.94 E-value=0.0028 Score=56.86 Aligned_cols=143 Identities=10% Similarity=-0.023 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHH-HHHHHhhccCC---CccChhhhhHHh
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAF-FLVRVFKVVSP---VKMTFEIYATCV 83 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~-~~~~~~~~~~~---~~~~~~~~~~~~ 83 (343)
-.+......+++.+.......+.|..++.++++.+ +..+...+--++.+.++ +..-....... ...+++.....+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence 34667778888888888888999999976677888 88887777777777766 54332111111 111222112333
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
...+++....+...+..++.+++=++++....-=+.+.+.++++++++.++.+.+|.+++++|+.+-.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 34457777788889999999999999999999999999999999999999999999999999988754
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.87 E-value=0.012 Score=42.96 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHH
Q 019264 86 ISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLV 143 (343)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~ 143 (343)
...+++.+..+...+++++|.+.+.-+ .....+.+.+.+.+++||++|+.++.++.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344788888999999999999999665 5689999999999999999999999998764
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.87 E-value=0.017 Score=52.52 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHH--HHhhccCchh-hc-cchhhHHHHHH
Q 019264 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVP--WYLLEKPMME-VS-QIQFNFWIFFS 233 (343)
Q Consensus 158 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~-~~-~~~~~~~l~~~ 233 (343)
...|+++++++++|++...+-.|+. ++ -++|...-...+-.-++.|. ..+.++...+ .. .....+....+
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-----w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-----WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 3579999999999999988877763 32 23444422111111112221 1122211111 12 12233445667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHhhhhhHHhhhhhhhccCCCc------cchhhHHHHHHHHHHHHHHHHhhh
Q 019264 234 NALCALALNFSIFLVIGRTGAV-TIRVAGVLKDWILIALSTVIFPEST------ITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~-~~si~~~~~pv~~~~~~~~~~~e~~------~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
++++-...+..++..+++.+-+ ...+..-+.-+.+++++.+++||=+ --...++|.+++++|+.+..+.-.
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888777888888888888654 4556667778888999999996421 125678999999999999876443
No 82
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.80 E-value=0.046 Score=47.83 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=57.1
Q ss_pred HHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhH----HHHHHHHhhhh
Q 019264 81 TCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVF----LNMVLVSVGVV 148 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~----~~~~~~~~G~~ 148 (343)
++-...|+.+...+.++..|.+....+.+-.+..+.++...+.+.+++||+-+++++ .+++++++|.+
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 455677999999999999999999999999999999999999999999998777765 44455555544
No 83
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.80 E-value=0.035 Score=41.62 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=40.7
Q ss_pred HHhhhhh-HHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 248 VIGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 248 ~~~~~~a-~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
++|+.+. +..++..-+-.+.+.+.|+++|||+ +|+.+++|+.+++.|++..+
T Consensus 55 al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~-~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 55 AVKGIDLSVAYALWGGFGIAATLAAGWILFGQR-LNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhc
Confidence 3555543 3346666677778889999999887 99999999999999998754
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.77 E-value=0.0057 Score=53.22 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 229 WIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
+...+-+++=...+...+.++++.+|.+..+....|.+.+.+++.++++.+ ++..||+++++...|+.+......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~-ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR-LSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc-cchhhHHHHHHHHHHHheeecCCc
Confidence 344455666666777788899999999999999999999999999999665 999999999999999998765543
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.46 E-value=0.00037 Score=59.55 Aligned_cols=135 Identities=13% Similarity=0.176 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHH
Q 019264 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
.|..+...| ..+....+..++.+.. +|.+.-....+.-.+...|..+....+....+.- -.| +++=|+.++
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~-----~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~--R~~-LiLRg~mG~ 108 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN-----DPMELASFRLLVRMLITYPCLIYYMQPVIGPEGK--RKW-LILRGFMGF 108 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc-----ChhHhhhhhhhhehhhhheEEEEEeeeeecCCCc--EEE-EEeehhhhh
Confidence 577777777 6667777777776554 4555444332222222222222111111111111 112 223455556
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
..-+..+++.++.+-.-+.++....|+++.++++.+++|+ .|....+|..+.+.|+++..+...
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~-~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP-FTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCC-CcHHHHHHHHHhhheEEEEecCCc
Confidence 5555667778888888889999999999999999999887 999999999999999998776553
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.34 E-value=0.072 Score=45.63 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhh
Q 019264 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVI 149 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l 149 (343)
.+...+.......+..+.++|.+.....+...+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3444556666777888999999999999999999999999999999999999999999999998754
No 87
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.23 E-value=0.045 Score=49.16 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHH
Q 019264 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALC 237 (343)
Q Consensus 158 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
...|..+++.|+++.+....++|+-..|.+. ++..-- +.. .. .--...||........
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~--~~~~~~------------------~~~-~~-~l~~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR--GSLRAG------------------SGG-RS-YLRRPLWWIGLLLMVL 62 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc------------------chh-hH-HHhhHHHHHHHHHHhc
Confidence 4679999999999999999999987655322 110000 000 00 0011123333222222
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
+.. ..+.+....+++..+.++.+.-+...+++..+++|+ ++..++.|.++++.|..+..
T Consensus 63 g~~---~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~-~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 63 GEI---LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK-LTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred chH---HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc-chHhHHhhHHHHHhhheeeE
Confidence 333 344568889999999999999999999999999887 99999999999999997654
No 88
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.098 Score=38.73 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.9
Q ss_pred Hhhhhh-HHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 249 IGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 249 ~~~~~a-~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
+|+.+- +..++..-+-.+.+.+.|+++|||+ ++..+++|+.++++|++..+..
T Consensus 51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~-l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 51 LKTIPLGVAYAIWTGIGIVGTALVGVLLFGES-LSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc-CCHHHHHHHHHHHHHHHHhhhc
Confidence 455433 2345556666777788999999887 9999999999999999987654
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.25 Score=44.57 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccC--chhhcc-----c--hhhHHHHHHH
Q 019264 164 YQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKP--MMEVSQ-----I--QFNFWIFFSN 234 (343)
Q Consensus 164 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~-----~--~~~~~l~~~~ 234 (343)
..+...+.++......|...++++..+.|.+..+..=+.-.++.+...+..+.. .-.... + +.......+-
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 344444455555555555444444557788888777666666555444443211 111000 1 1112223333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
+++=...|...+....+.+|.+..+...+|-..+.+++.++++.+ ++..||...++...|+.+.+
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rk-Ls~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRK-LSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHh
Confidence 444444555677889999999999999999999999999999776 99999999999999998876
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.13 E-value=0.016 Score=43.55 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 87 SAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
-+++-.+...+++.+...+.|.+.-+. +++=++|++.++++.+|..+++.++|+.++++|+.+.
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 345555667788889999999998885 7899999999999988888999999999999998764
No 91
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.05 E-value=0.056 Score=40.67 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.6
Q ss_pred HhhhhhHH-HHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 249 IGRTGAVT-IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 249 ~~~~~a~~-~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
+++.+-.. .++..-+-.+.+++.|+++|||+ +|+.+++|++++++|++..+..
T Consensus 51 l~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~-~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 51 LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 44444322 33444556677789999999887 9999999999999999997543
No 92
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.87 E-value=0.088 Score=39.24 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=41.1
Q ss_pred Hhhhhh-HHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 249 IGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 249 ~~~~~a-~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
+|+.+- +..++..-+-.+.+.+.|+++|||+ +|+.+++|+.+++.|++..+.
T Consensus 50 l~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~-~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 50 MKSLPVGTAYAVWTGIGAVGAAITGIVLLGES-ASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhc
Confidence 455443 3446666677788899999999887 999999999999999988653
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=1.6 Score=34.70 Aligned_cols=133 Identities=11% Similarity=0.002 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHH
Q 019264 13 YLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFAS 92 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (343)
....+.-+.......-.|-..-+ ..+.|+.-.+.-+.++..++..+.....+++.....++..+| .+..|++-..
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~----~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW-~~~GG~lGa~ 81 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLAR----YLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWW-AWIGGLLGAI 81 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchH-HHHccchhhh
Confidence 33444445555555556655555 334588888899998888777766553322222212233233 3344544444
Q ss_pred HHHHhhhhhcccchhHHHH-HHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHhhhhhe
Q 019264 93 SLWFGNTAYLHISVAFIQM-LKALMPVATFFMAVLCG----TDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 93 ~~~~~~~al~~~~~~~~~i-i~~~~Pv~~~~ls~l~~----~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
.............++..+. ..+-+-+.-+++..+=. ++++++.++.++.+.++|+.+.
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 4444445555555544444 44556677777776522 4678999999999999995544
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.44 E-value=0.35 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHH-HHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHH
Q 019264 245 IFLVIGRTGAVTI-RVAGVLKDWILIALSTVIFPESTITGLNIIGYAIA 292 (343)
Q Consensus 245 ~~~~~~~~~a~~~-si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~li 292 (343)
...++|+.+...+ ++..-+..+...+.|.++|||+ +|+.+++|+.+|
T Consensus 46 l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~-~s~~~~~gi~lI 93 (93)
T PF00893_consen 46 LSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGES-LSLSKWLGIGLI 93 (93)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHhheeeC
Confidence 3345777766655 6666678888999999999887 999999999875
No 95
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.19 Score=42.55 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCC---------hHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHH
Q 019264 169 IVAEALRLVLTQVLLQKKGLTLN---------PITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (343)
Q Consensus 169 ~~~~a~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
-+||=.|.+.++|..+.+ ++.+ ...+++++.....++.=....+.+....+ ....++-..++..-.
T Consensus 22 fvCYF~yGI~QEkitrGk-Yg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D----~t~~~~YaAcs~sYL 96 (337)
T KOG1580|consen 22 FVCYFVYGIQQEKITRGK-YGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEID----NTPTKMYAACSASYL 96 (337)
T ss_pred hheehhhhhHHHHhhccc-cCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccccc----CCcchHHHHHHHHHH
Confidence 468888999999986643 3322 22233443333333321122222212221 112233333333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 019264 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~~ 304 (343)
....+...+++..+=.+.-+-...+|+..+++|+++.+.. .+|....-...|++|+.++.+...
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~Ks-Y~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKS-YHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccc-ccHHHHHHHHHHHHHHHHhhcccc
Confidence 3555677788998888888889999999999999999655 999999999999999999876543
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.31 E-value=0.52 Score=42.85 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc--cCCCccChhhhhHHhhhH
Q 019264 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKV--VSPVKMTFEIYATCVVPI 86 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 86 (343)
....+...+.|.+-. ++-|.-..+++.+.+-|.++.+.-.+ ..+++++....... .++-+.|.+..+..++..
T Consensus 249 ~llaL~sA~~YavY~----vllk~~~~~eg~rvdi~lffGfvGLf-nllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 249 NLLALLSALLYAVYT----VLLKRKIGDEGERVDIQLFFGFVGLF-NLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 344555555555543 35577666544455656666655443 44444443333222 233333333224444444
Q ss_pred HH-HHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccc
Q 019264 87 SA-FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI 155 (343)
Q Consensus 87 ~~-~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~ 155 (343)
++ .-...-+++.+|.-.+++-++++-.+.+....++...++.++++++..++|.+.+++|.+++...+.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 44 3455788999999999999999999999999999999999999999999999999999998887543
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.91 E-value=2.1 Score=37.91 Aligned_cols=138 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-CCC---ccChhhhhHHh
Q 019264 8 PLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVV-SPV---KMTFEIYATCV 83 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~-~~~---~~~~~~~~~~~ 83 (343)
+.......+..+...=...+..++.++. +++.+ ++.+.+.--+...+.-.......+.. +.. +.. .+..+.+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~--~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~h-p~~~~Di 244 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFK--KYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEH-PDVAFDI 244 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhc--cCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcC-hhHHHHH
Confidence 3466666777776665555666777777 55665 55554444443333332222111111 111 111 2236778
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhh
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVI 149 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l 149 (343)
+..+.+...++.+-+.-++.-.+=+.+++..+==++...++.+.++++.++.+|.++.+.+.|+.+
T Consensus 245 ~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 245 LLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 888888888888888877765555667777777888999999999999999999999888888764
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.06 E-value=7.4 Score=35.29 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHH-hhccCchh---hccchhhHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWY-LLEKPMME---VSQIQFNFWIFFSN 234 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~---~~~~~~~~~l~~~~ 234 (343)
..|+++..+++++.+.+.+=.||. ++ =++|.......+-+-+..|... ...-|+.. .+......+...+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv---k~---WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV---KG---WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc---CC---ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 579999999999999988877775 22 2455544433333333334332 22333322 11111223322222
Q ss_pred HHH-HHHHHHHHHHHHhhhhh-HHHHHHhhhhhHHhhhhhhhccCC------CccchhhHHHHHHHHHHHHHHHHhhhh
Q 019264 235 ALC-ALALNFSIFLVIGRTGA-VTIRVAGVLKDWILIALSTVIFPE------STITGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~a-~~~si~~~~~pv~~~~~~~~~~~e------~~~s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
++. +.. ...+=..+++.+- ...++.--+..++..++-.++.|+ .+-....++|.+++++|+.+..+.-..
T Consensus 80 G~lWGIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 80 GVLWGIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHhcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 322 222 1112223555442 233333334444444443333211 113467899999999999987766543
No 99
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=1.7 Score=38.83 Aligned_cols=136 Identities=12% Similarity=0.044 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-----CCccChhhhhHHhhhH
Q 019264 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVS-----PVKMTFEIYATCVVPI 86 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 86 (343)
...++....+.........|...+.. +++ -+.+.+...+.+...+.......+..+ ..+.+....+..+...
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~--~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSA--NLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc--ccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 34555666666666666667666532 222 333444444444444444333333211 1111111213344455
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
+++-.+-.++..++.+..|+.+.++.....-..+.+...++.+++.++...+|+.+.++|.++-
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 5566667788888888888888888886677777777777777788888887777777665543
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.70 E-value=2.7 Score=35.58 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCC----ccChhhhhHHhhhHHHHHHHHHH
Q 019264 20 ILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV----KMTFEIYATCVVPISAFFASSLW 95 (343)
Q Consensus 20 ~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 95 (343)
+.++..+.+..|...+- -+|. -..-.++.-+++..++...-.....+.+. .++.+. ...+.+.|++-.+..+
T Consensus 164 clssaafVL~mrkri~l--tNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~-l~am~ISgl~svgiSy 239 (309)
T COG5070 164 CLSSAAFVLIMRKRIKL--TNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDS-LMAMFISGLCSVGISY 239 (309)
T ss_pred hHhHHHHHHHHHHhhcc--cccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHH-HHHHHHHHHHHhhhhh
Confidence 33444444444444331 1333 33344555555544444433333322222 122222 4567778888888888
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHh
Q 019264 96 FGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSV 145 (343)
Q Consensus 96 ~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~ 145 (343)
..-|++.-++...+++..++.-....+.+.+++++..+...+.++.+++.
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 89999999999999999999988889999999999998888877655443
No 101
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=89.03 E-value=0.81 Score=34.47 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHHHhhhhhHHHHHH-hhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHH
Q 019264 245 IFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 245 ~~~~~~~~~a~~~si~-~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~ 298 (343)
++..+++.+-+.+..+ +.+.-+++.+.++++. |+..+...++|+++++.|+.+
T Consensus 58 f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lg-e~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 58 FFLLLGSADLSLAVPIANSLAFVFTALTGWLLG-EEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHhcCCceeeehHHhHHHHHHHHHHHHHhc-CcccchhHHHHHHHHHcCeee
Confidence 3444666665544444 6788888888998777 665899999999999999753
No 102
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=85.78 E-value=0.51 Score=40.41 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=56.8
Q ss_pred hHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHH----HHHHHHhhhhhe
Q 019264 80 ATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFL----NMVLVSVGVVIS 150 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~----~~~~~~~G~~l~ 150 (343)
-+.-...|+..+.++.+...|-+....++.-.+..+..+...+-+.+++|||-+++++. ++++.++|..+.
T Consensus 209 t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 209 TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 34555668899999999999999988888888888889999999999999999988864 455555555443
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=85.67 E-value=0.51 Score=38.90 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
..++.+..++++.+|+.++-....+..+..+++++++||+ +....++..++.+.|+.+..+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~-~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR-FMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc-hhhhhHHHHHHHhCcEEEEEe
Confidence 3456677789999999999999999999999999999988 998889988888888876543
No 104
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=85.30 E-value=1.6 Score=38.64 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhcc--CCCccc--hhhHHHHHHHHHHHHHH
Q 019264 228 FWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIF--PESTIT--GLNIIGYAIALCGVVMY 299 (343)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~--~e~~~s--~~~~~G~~lil~g~~~~ 299 (343)
+.....++++--..+....+++...+-+ +...+..-+++++|..+- .|.+.+ ..-+.|.+++++++++-
T Consensus 72 v~~A~aGGvvfnlgNillq~aia~aGmS---Vafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 72 VLFAMAGGVVFNLGNILLQAAIAFAGMS---VAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred HHHHHHhhHhhhhHHHHHHHHHHHhcce---eeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHH
Confidence 3445556666666666655555444432 222222223344443322 133343 35566777777777663
No 105
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=75.07 E-value=0.94 Score=39.46 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH-Hhccc-ccchhhHHHHHHHHhhhhheeecccee--hHHHHHHHHHHHH
Q 019264 102 LHISVAFIQMLKALMPVATFFMAV-LCGTD-KARLDVFLNMVLVSVGVVISSYGEIHF--NIVGTLYQVTGIV 170 (343)
Q Consensus 102 ~~~~~~~~~ii~~~~Pv~~~~ls~-l~~~e-k~s~~~~~~~~~~~~G~~l~~~~~~~~--~~~G~~~~l~s~~ 170 (343)
+-.+-+..+++.++..+.+.++-. .++|+ -+-..-.++++++++-+.+...-.... -+.|+++.++..+
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~l 117 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCL 117 (381)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 334445555666665555544443 33444 456777778887777666555443321 2456555444433
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=72.61 E-value=48 Score=29.37 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHH
Q 019264 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~ 299 (343)
-++|-.......+..+..++|+...+.--..-+++-+++.-+++.+ ++..||+|+..+..|+...
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~t-i~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRT-ITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcc-cchhhHHHHHHHHhhhhee
Confidence 3444333333444557888999898888888999999999999555 9999999999999998763
No 107
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.43 E-value=0.91 Score=40.48 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHH
Q 019264 157 FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNAL 236 (343)
Q Consensus 157 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (343)
.+..|.++++.|++.-+...++.|+..+|.+. . .....+..... -....||...+.-.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----~----------------~~ra~~gg~~y-l~~~~Ww~G~ltm~ 75 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----S----------------GLRAGEGGYGY-LKEPLWWAGMLTMI 75 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----h----------------cccccCCCcch-hhhHHHHHHHHHHH
Confidence 34678888888888888887877776554211 0 00001110100 01133444444444
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 237 CALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 237 ~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
.+=..++. +....+++..+.++.+.-+...+++..+++|+ +++...+|.+++++|..+....
T Consensus 76 vGei~NFa---AYaFAPasLVtPLGAlsvi~saila~~~L~Ek-l~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 76 VGEIANFA---AYAFAPASLVTPLGALSVIISAILASFFLKEK-LNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHhHhhHH---HHhhchHhhhccchhHHHHHHHHHHHHHHHHH-HHHhhhhheeEEecccEEEEEe
Confidence 44444444 35678888888899999999999999999776 9999999999999998775443
No 108
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=71.29 E-value=70 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=24.1
Q ss_pred HHHhhhhhHHHHHHhhhhhHHhhhhhhhccCC
Q 019264 247 LVIGRTGAVTIRVAGVLKDWILIALSTVIFPE 278 (343)
Q Consensus 247 ~~~~~~~a~~~si~~~~~pv~~~~~~~~~~~e 278 (343)
.+-++-+++.....+.++-.+-++-..+++..
T Consensus 114 vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~s 145 (249)
T PF10225_consen 114 VCYRYGPPVDPRSRNFVKWALQLIGLVLIYFS 145 (249)
T ss_pred hhcccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888777777733
No 109
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=71.01 E-value=20 Score=31.55 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH-------HhhccCCCccChhhh
Q 019264 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVR-------VFKVVSPVKMTFEIY 79 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~-------~~~~~~~~~~~~~~~ 79 (343)
.++...+..+.+-.+.|.-+...++-.-+ +||-+ |-.-.+.-.+......++... ...+.++-..+...
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~--kyGKh-~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g- 235 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQ--KYGKH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLG- 235 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC-hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccC-
Confidence 44566777777777888888888888877 55555 545555545444333222211 01111111122211
Q ss_pred hHHhhhHHHHHHH-HHHHhhhhhccc-------chhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 80 ATCVVPISAFFAS-SLWFGNTAYLHI-------SVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~~al~~~-------~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
..+|....|.. +..+++.+.+++ +.=+.++...+==.+.+++|.+.++...++.+|+|..+.++|..+..
T Consensus 236 --~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 236 --FKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 11455555544 444555555543 22223333444456778888899999999999999999999987643
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.22 E-value=11 Score=27.99 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 114 ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 114 ~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
....+...+..+.+-|+||++..+++..++++|+.++...
T Consensus 65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3466777888889999999999999999999999987654
No 111
>PRK02237 hypothetical protein; Provisional
Probab=66.08 E-value=13 Score=27.60 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 114 ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 114 ~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
....+...+..+.+-|+||++..+++..++++|+.++...
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 3456666788889999999999999999999999887543
No 112
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.02 E-value=13 Score=32.63 Aligned_cols=103 Identities=11% Similarity=-0.077 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCC----CccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH
Q 019264 44 PITLTMIHMGFSGVVAFFLVRVFKVVSP----VKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVA 119 (343)
Q Consensus 44 p~~l~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 119 (343)
-+.++++.-+.+.++.++.....+..+. ++.+..+.|..+...|++.+...+...+=++.+|+=+..+-...--..
T Consensus 215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~a 294 (347)
T KOG1442|consen 215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAA 294 (347)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHH
Confidence 4677888888887777777655543321 233233323334444555555556666667778877766666666666
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHhh
Q 019264 120 TFFMAVLCGTDKARLDVFLNMVLVSVG 146 (343)
Q Consensus 120 ~~~ls~l~~~ek~s~~~~~~~~~~~~G 146 (343)
=.++++.+++|.-+...|-+.++.++|
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvg 321 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVG 321 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEeh
Confidence 678888899998888888776555554
No 113
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=63.43 E-value=89 Score=26.18 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhCCCCCChHHHHHhhhHHHHHHHHHHHHh
Q 019264 160 VGTLYQVTGIVAEALRLVLTQ-VLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYL 213 (343)
Q Consensus 160 ~G~~~~l~s~~~~a~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (343)
.+.++.+.+.++-|...++.. .. +.-.+++-|......++++...+.
T Consensus 30 ~s~l~Li~~f~~vA~l~~ll~a~F-------la~~qIiVYvGAI~VLflFvIMll 77 (198)
T PRK06638 30 HSALFLILTFLSIAGLYFLLGAEF-------LGVVQIIVYVGAVMVLFLFVVMML 77 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555444432 11 345666777777766666665554
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=63.39 E-value=11 Score=27.84 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 87 SAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
-++.-.+..+++.-++..|.+.+.=+. +++-.++.+.+..+..|-.-.+.+++..++++|+.+.
T Consensus 59 FllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 59 FLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 334444556778888888888776554 4678889999988877788888899999999998764
No 115
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=62.52 E-value=1.6e+02 Score=28.85 Aligned_cols=27 Identities=11% Similarity=-0.228 Sum_probs=15.2
Q ss_pred HhhhhhHHHHHHhhhhhHHhhhhhhhc
Q 019264 249 IGRTGAVTIRVAGVLKDWILIALSTVI 275 (343)
Q Consensus 249 ~~~~~a~~~si~~~~~pv~~~~~~~~~ 275 (343)
..|.-+....+.....|+-+.+.|.+.
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555666666666654
No 116
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=58.38 E-value=13 Score=24.83 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 019264 283 GLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 283 ~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
-.-++|+.++++|+++|....++
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888999999999776544
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=17 Score=26.70 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 115 LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 115 ~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
...+...+..++.-|.+|++..+.+..++++|+.++..+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 456666777888899999999999999999999887764
No 118
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=57.02 E-value=1.5e+02 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=38.0
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 101 YLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 101 l~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
+..++.=+.++..-..=+.+.+++..+++++++...|.+..++..|+..-
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34455545555555566778888899999999999999999999988765
No 119
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=54.83 E-value=31 Score=27.12 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHhhhhhHHhhhhhhhcc
Q 019264 250 GRTGAVTIRVAGVLKDWILIALSTVIF 276 (343)
Q Consensus 250 ~~~~a~~~si~~~~~pv~~~~~~~~~~ 276 (343)
..-+....+.+.|+.|.+.++++.+.+
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777766666654
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=54.64 E-value=86 Score=23.25 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHH-HHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 90 FASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~~~ii~~-~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
|....-..-.|.+.-+.+.-.+++= .+-.....++.+++||++++....|..++++++.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3344444455555555555555553 334444577889999999999999999988887654
No 121
>PRK02237 hypothetical protein; Provisional
Probab=53.58 E-value=24 Score=26.21 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 257 IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 257 ~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
.+.++-+--+.+++.++.+-|.+ ++...++|..++++|+.+..+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~-Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVR-PDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcC-CChhHHHhHHHHHHhHHHhee
Confidence 34455555677788899998776 999999999999999876543
No 122
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=51.66 E-value=24 Score=26.16 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=34.2
Q ss_pred HHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 019264 258 RVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 258 si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~ 301 (343)
+.++-+--+.+++.++.+-|.+ |+...++|..++++|+.+..+
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~-Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVR-PDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcC-CChHHHHhHHHHHHhHHheEe
Confidence 4445555677788899888766 999999999999999877543
No 123
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.07 E-value=3e+02 Score=28.48 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhhe
Q 019264 107 AFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (343)
Q Consensus 107 ~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~ 150 (343)
+-+.++..+.|+-.+.++.....+|.+...+.+.+..++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 55677888899999999888777776555566666666776544
No 124
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=50.88 E-value=18 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=12.7
Q ss_pred CCCccchhhHHHHHHHHHHHHH
Q 019264 277 PESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 277 ~e~~~s~~~~~G~~lil~g~~~ 298 (343)
||..-++..++|+.++..+.++
T Consensus 6 G~~~~~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 6 GESGNSLLLLLGLLLLGLGGLL 27 (34)
T ss_pred CCcccHHHHHHHHHHHHHHHHH
Confidence 3444667778888554444433
No 125
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=50.69 E-value=2.3e+02 Score=27.00 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=38.8
Q ss_pred HhcccccchhhHHHHHH--HHhhhhheeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019264 126 LCGTDKARLDVFLNMVL--VSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKK 186 (343)
Q Consensus 126 l~~~ek~s~~~~~~~~~--~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 186 (343)
++-|.|+++.|++=+++ ++.=+.++...|.- -++..+.+.|+.|-.+-..|.+..++++
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi--~F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHI--GFNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34577899998854444 44444445555532 2456777888888888888888888763
No 126
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=48.45 E-value=18 Score=26.73 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=23.4
Q ss_pred hhhhhhccCCCccchhhHHHHHHHHHHHHH
Q 019264 269 IALSTVIFPESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 269 ~~~~~~~~~e~~~s~~~~~G~~lil~g~~~ 298 (343)
+.++.++++|+ +++.++.|.++++.+++.
T Consensus 77 ~~Fsv~~l~E~-l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEP-LKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCC-ccHHHHHHHHHHHHhhhe
Confidence 45677888877 999999999998877653
No 127
>PHA03049 IMV membrane protein; Provisional
Probab=43.46 E-value=37 Score=22.66 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 019264 283 GLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 283 ~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
-.-++++.++++|.++|....++
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788888999998766544
No 128
>PRK02463 OxaA-like protein precursor; Provisional
Probab=43.19 E-value=1.7e+02 Score=26.43 Aligned_cols=40 Identities=5% Similarity=0.022 Sum_probs=23.5
Q ss_pred HHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH
Q 019264 259 VAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 259 i~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
....+.|+..++++..+= .. +..+-.+|.++.++=-++.+
T Consensus 209 ~m~~~~Pim~~~~~~~~P-ag-L~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 209 AMMYMMPIMMVVFSFSSP-AG-VGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHH
Confidence 355667777776666443 23 66666676666655444433
No 129
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=42.78 E-value=32 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh
Q 019264 281 ITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 281 ~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
.++..++|+++++.|..+|..+.
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997544
No 130
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=38.93 E-value=1.4e+02 Score=24.06 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=36.7
Q ss_pred hcccccchhhHHHHHH-------HHhhhhheeeccceehHHHHHHHHHHHHHHHHHHHHHHHH
Q 019264 127 CGTDKARLDVFLNMVL-------VSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVL 182 (343)
Q Consensus 127 ~~~ek~s~~~~~~~~~-------~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~ 182 (343)
..|..|+..+.+|+.+ ++.|+.+....+.+.-....+.+..+++.+++..++..-.
T Consensus 92 v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 92 VRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 4444555555555543 4567777776665545567788888888888887776544
No 131
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=38.64 E-value=2.1e+02 Score=25.36 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecccee
Q 019264 105 SVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHF 157 (343)
Q Consensus 105 ~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~ 157 (343)
.+..+..+...---.|.++|++++.++++....-+..+++.|+.+-.+++.+-
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 44455555555566788999999999999999999999999999877766443
No 132
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=38.50 E-value=84 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 019264 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMI 50 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~ 50 (343)
.+.....++.++++.++++.+.++-|.+..+ --+||++++-+
T Consensus 52 ~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~---m~NY~fFL~Ql 93 (130)
T PF08627_consen 52 SKENFKLLVYVVVYVVSGVINRVLYKKMTNP---MKNYPFFLNQL 93 (130)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHhh---cccchHHHHHh
Confidence 3556778888999999999999999999872 22356666644
No 133
>PRK11715 inner membrane protein; Provisional
Probab=38.40 E-value=3.6e+02 Score=25.76 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=37.8
Q ss_pred hcccccchhhHHHHHH--HHhhhhheeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019264 127 CGTDKARLDVFLNMVL--VSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKK 186 (343)
Q Consensus 127 ~~~ek~s~~~~~~~~~--~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 186 (343)
+-|.|+++.|++=+++ ++.=+.+++..|.- -++..+.+.|+.|-.+-..|....+++.
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHi--gF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLSEHI--GFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467889988854444 44444445555532 2456777888888888888888887763
No 134
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=38.39 E-value=1e+02 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 019264 157 FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLT 189 (343)
Q Consensus 157 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 189 (343)
.+..|.+.+..+...+|.=.--.|+..+++...
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 557899999999999998777778887765433
No 135
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.41 E-value=74 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=23.8
Q ss_pred hhhhhhccCCCccchhhHHHHHHHHHHHHH
Q 019264 269 IALSTVIFPESTITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 269 ~~~~~~~~~e~~~s~~~~~G~~lil~g~~~ 298 (343)
+.+|++.++|+ +.+.++.|..+++.|+.+
T Consensus 84 v~Fsvfyl~ep-l~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEP-LRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHHHH
Confidence 44688888776 999999999998888765
No 136
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=36.96 E-value=2.1e+02 Score=24.72 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhHHhhhhhhhcc---C---CCccchhhHHHHHHHHHHHHHH
Q 019264 231 FFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIF---P---ESTITGLNIIGYAIALCGVVMY 299 (343)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~pv~~~~~~~~~~---~---e~~~s~~~~~G~~lil~g~~~~ 299 (343)
++.+-++++..++..|.+..-...++++=.+...-.--.++.|.+. . +...+...|++-++++.|.++.
T Consensus 163 F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 163 FMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 4444555666666666555545555555444443322233333322 1 1125567788888888888764
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.74 E-value=42 Score=25.73 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=3.4
Q ss_pred cchhhHHHHH
Q 019264 281 ITGLNIIGYA 290 (343)
Q Consensus 281 ~s~~~~~G~~ 290 (343)
++...++|++
T Consensus 61 fs~~~i~~Ii 70 (122)
T PF01102_consen 61 FSEPAIIGII 70 (122)
T ss_dssp SS-TCHHHHH
T ss_pred ccccceeehh
Confidence 3333334333
No 138
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=34.21 E-value=59 Score=27.45 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=28.9
Q ss_pred hhhhHHHHHHhhhhhHHhhhhhhhccCCCccc-hhhHHHH-HHHHHHHHH
Q 019264 251 RTGAVTIRVAGVLKDWILIALSTVIFPESTIT-GLNIIGY-AIALCGVVM 298 (343)
Q Consensus 251 ~~~a~~~si~~~~~pv~~~~~~~~~~~e~~~s-~~~~~G~-~lil~g~~~ 298 (343)
...+...+.+..+.|..+..+|..+- +.-.. ..+++|. +++..|...
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLA-KFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHH
Confidence 35666777777788888888887776 33123 3556654 344446543
No 139
>COG2323 Predicted membrane protein [Function unknown]
Probab=34.21 E-value=3e+02 Score=23.60 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 019264 45 ITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMA 124 (343)
Q Consensus 45 ~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls 124 (343)
..-..+|.++..+.++.+.+..++++..+.+.-+ .+....+.-.......+- .+|.-...+...+--++..+++
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd---~vv~i~iG~i~~~~i~~~---~i~~~~~~~~~~~~~~l~~~l~ 77 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFD---FVVMITLGSIAGDAIFDD---DVSILPTIIAILTLALLQILLS 77 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHH---HHHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHHHHHHHHH
Confidence 4567889999988888889999988777777644 233333333333333333 2333333333334444445555
Q ss_pred HHhcc
Q 019264 125 VLCGT 129 (343)
Q Consensus 125 ~l~~~ 129 (343)
++-.|
T Consensus 78 ~l~~k 82 (224)
T COG2323 78 YLSLK 82 (224)
T ss_pred HHHhc
Confidence 55443
No 140
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.90 E-value=95 Score=24.03 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=21.0
Q ss_pred HHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHH
Q 019264 255 VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVV 297 (343)
Q Consensus 255 ~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~ 297 (343)
...+.+.++-|++.++.+.++. .. +...++..++..+.|..
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~-~~-~~~~e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLG-SY-LGGSELWAILGGLLGLA 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH
Confidence 3455555666777777766555 33 33334444444444433
No 141
>PRK10666 ammonium transporter; Provisional
Probab=31.96 E-value=4.6e+02 Score=25.02 Aligned_cols=53 Identities=11% Similarity=-0.144 Sum_probs=24.0
Q ss_pred hcccccchhhHHHHHHHHhhhhheeec-cceehHHHHHHHHHHHHHHHHHHHHHHH
Q 019264 127 CGTDKARLDVFLNMVLVSVGVVISSYG-EIHFNIVGTLYQVTGIVAEALRLVLTQV 181 (343)
Q Consensus 127 ~~~ek~s~~~~~~~~~~~~G~~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~ 181 (343)
+.++|++...... -+++|.+-++.. +.-..+..++.+.++++..-....+.|+
T Consensus 273 ~~~gk~~~~~~~n--G~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~ 326 (428)
T PRK10666 273 ALRGKPSLLGACS--GAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKR 326 (428)
T ss_pred HHhCCCCHHHHHH--HHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666554422 223444433322 2222345566666666655443333343
No 142
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=31.20 E-value=96 Score=24.09 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=15.0
Q ss_pred hhhhhccCCCccchhhHHHHHHHHHHHHHH
Q 019264 270 ALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (343)
Q Consensus 270 ~~~~~~~~e~~~s~~~~~G~~lil~g~~~~ 299 (343)
++|.+.+++ --...++|..+...|++..
T Consensus 76 f~G~l~~~~--~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 76 FLGTLCLGQ--SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 344444422 3345566777777776543
No 143
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=30.78 E-value=83 Score=27.59 Aligned_cols=132 Identities=8% Similarity=0.051 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCccChhhhhHHhhhHHH
Q 019264 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISA 88 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (343)
..+.+....+|.+++++ .++..+ +-+--..+++.- ++++++..+= ....+.+...+.|+......+...+
T Consensus 168 D~lvi~GATlYaVSNv~----EEflvk----n~d~~elm~~lg-LfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L 237 (336)
T KOG2766|consen 168 DFLVIAGATLYAVSNVS----EEFLVK----NADRVELMGFLG-LFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFAL 237 (336)
T ss_pred cEEEEecceeeeecccc----HHHHHh----cCcHHHHHHHHH-HHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHH
Confidence 34445556677777664 455555 444223333333 3354443332 2222233333444221222222333
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheee
Q 019264 89 FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (343)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~ 152 (343)
+++....+.-.-++..++..+.+-.-++-.|..+. ..++-+.+|.-.++...+..|.++-.-
T Consensus 238 ~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 238 TMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 44443334444455666666666666677777666 455667999999999999999888654
No 144
>PRK01637 hypothetical protein; Reviewed
Probab=30.31 E-value=2.6e+02 Score=24.83 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=12.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHh
Q 019264 281 ITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 281 ~s~~~~~G~~lil~g~~~~~~~ 302 (343)
+-|..+.+.++.+.+.+-....
T Consensus 246 llWlyl~~~ilL~Gaelna~~~ 267 (286)
T PRK01637 246 FVWVYLSWCIVLLGAEITATLG 267 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555544443
No 145
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.30 E-value=40 Score=20.47 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=9.6
Q ss_pred cchhhHHHHHHHHHHHHH
Q 019264 281 ITGLNIIGYAIALCGVVM 298 (343)
Q Consensus 281 ~s~~~~~G~~lil~g~~~ 298 (343)
++|.+++=.++++.|++.
T Consensus 2 p~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFA 19 (49)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455555555555555533
No 146
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.10 E-value=83 Score=19.51 Aligned_cols=19 Identities=16% Similarity=0.460 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019264 287 IGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 287 ~G~~lil~g~~~~~~~~~~ 305 (343)
+-.+++++|++.+.+++++
T Consensus 16 v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3355666787877776554
No 147
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=27.95 E-value=5.9e+02 Score=24.98 Aligned_cols=83 Identities=10% Similarity=-0.074 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh--cccccchhhHHHHHHHHhhhhheeeccceehHHHHHHHHHHHHHHHHHHHHHH
Q 019264 103 HISVAFIQMLKALMPVATFFMAVLC--GTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQ 180 (343)
Q Consensus 103 ~~~~~~~~ii~~~~Pv~~~~ls~l~--~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~ 180 (343)
..++..+.++.++.-+-..+-+.+. ++++.+..+++.......|+.+...+-.+..+...+..+++.+++...++...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888877776666655543 45677777776666666666544433222223334444555566666555554
Q ss_pred HHhhh
Q 019264 181 VLLQK 185 (343)
Q Consensus 181 ~~~~~ 185 (343)
-..|+
T Consensus 330 t~~Q~ 334 (524)
T PF05977_consen 330 TLVQL 334 (524)
T ss_pred HHHHH
Confidence 44444
No 148
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=27.16 E-value=1.6e+02 Score=19.20 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 019264 286 IIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 286 ~~G~~lil~g~~~~~~~~~~ 305 (343)
|+ +.++++|+++......+
T Consensus 9 Wi-iLl~lvG~i~n~iK~L~ 27 (63)
T PF13980_consen 9 WI-ILLILVGMIINGIKELR 27 (63)
T ss_pred HH-HHHHHHHHHHHHHHHHH
Confidence 44 77888898876655433
No 149
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.79 E-value=71 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019264 286 IIGYAIALCGVVMYNYI 302 (343)
Q Consensus 286 ~~G~~lil~g~~~~~~~ 302 (343)
++|++.+++ ++.|..+
T Consensus 74 ~aGvIg~Il-li~y~ir 89 (122)
T PF01102_consen 74 MAGVIGIIL-LISYCIR 89 (122)
T ss_dssp HHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHH-HHHHHHH
Confidence 344443333 3344433
No 150
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=25.60 E-value=2.5e+02 Score=25.83 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=15.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhh
Q 019264 282 TGLNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 282 s~~~~~G~~lil~g~~~~~~~~~~ 305 (343)
.+.++++.++++..+.+..+.+++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Confidence 456677777777776666555444
No 151
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.07 E-value=2.8e+02 Score=20.31 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHHhcccccchhhHHHHHHHHhhhhhee
Q 019264 121 FFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (343)
Q Consensus 121 ~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~ 151 (343)
..+|.+.+||.+++..+.+..++..|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999988887754
No 152
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.62 E-value=1.5e+02 Score=28.58 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh
Q 019264 281 ITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 281 ~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999987765433
No 153
>COG1971 Predicted membrane protein [Function unknown]
Probab=24.32 E-value=1.2e+02 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=25.0
Q ss_pred hHHHHHHhhhhhHHhhhhhhhccCCCccchhhHHHHHH-HHHHHHH
Q 019264 254 AVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAI-ALCGVVM 298 (343)
Q Consensus 254 a~~~si~~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~l-il~g~~~ 298 (343)
+...+.+..+.|......+.++-+-. -.+.+|+|.++ .+.|...
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i-~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFI-AEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777776654222 45677666544 4445543
No 154
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=24.22 E-value=94 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 019264 287 IGYAIALCGVVMYNYIKVKDVR 308 (343)
Q Consensus 287 ~G~~lil~g~~~~~~~~~~~~~ 308 (343)
+-++++.+|+++|.+.++++++
T Consensus 17 ~~~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 17 LYLALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHHHhCCCcchh
Confidence 3346788899998887655433
No 155
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=23.73 E-value=4.1e+02 Score=21.76 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcccccchhhHH-HHHHHHhhhhheeecccee-hH-HHHHHHHHHHHHHH
Q 019264 118 VATFFMAVLCGTDKARLDVFL-NMVLVSVGVVISSYGEIHF-NI-VGTLYQVTGIVAEA 173 (343)
Q Consensus 118 v~~~~ls~l~~~ek~s~~~~~-~~~~~~~G~~l~~~~~~~~-~~-~G~~~~l~s~~~~a 173 (343)
+...++.++..| |+...+++ ++.+.+.|..-+..+|..+ .+ .-++..+.+.+...
T Consensus 34 ~i~l~~~w~~~r-kv~km~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~Llg 91 (180)
T COG2917 34 VIQLAILWIKYR-KVEKMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLG 91 (180)
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHHHH
Confidence 344445555544 45555554 4444445554443333321 11 13344444444444
No 156
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.67 E-value=2.3e+02 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHH
Q 019264 285 NIIGYAIALCGVVM 298 (343)
Q Consensus 285 ~~~G~~lil~g~~~ 298 (343)
.++|+.+++..+++
T Consensus 8 ~i~Gm~iVF~~L~l 21 (79)
T PF04277_consen 8 MIIGMGIVFLVLIL 21 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666555443
No 157
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.25 E-value=1.1e+02 Score=23.00 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=29.4
Q ss_pred cccchhhHHHHHHHHhhhhheeecc---ce------ehHHHHHHHHHHHHHHHHHHHH
Q 019264 130 DKARLDVFLNMVLVSVGVVISSYGE---IH------FNIVGTLYQVTGIVAEALRLVL 178 (343)
Q Consensus 130 ek~s~~~~~~~~~~~~G~~l~~~~~---~~------~~~~G~~~~l~s~~~~a~~~v~ 178 (343)
.|+++.+..++.++++|.++.-.+- .+ +.+.|.+..+.|.+.|..-..+
T Consensus 6 ~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 6 SKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4778888889999999988654331 11 2234555555555555543333
No 158
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.83 E-value=4.6e+02 Score=21.95 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019264 161 GTLYQVTGIVAEALRLVLTQVLLQ 184 (343)
Q Consensus 161 G~~~~l~s~~~~a~~~v~~~~~~~ 184 (343)
|++..++.++..++...+..+.++
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555444444444433333433333
No 159
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=82 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 019264 287 IGYAIALCGVVMYNYIKVKD 306 (343)
Q Consensus 287 ~G~~lil~g~~~~~~~~~~~ 306 (343)
+-+.+++.|++.+.+++.++
T Consensus 16 ~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHhcccch
Confidence 34667777888877766543
No 160
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.34 E-value=88 Score=27.62 Aligned_cols=21 Identities=14% Similarity=0.450 Sum_probs=18.0
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 019264 281 ITGLNIIGYAIALCGVVMYNY 301 (343)
Q Consensus 281 ~s~~~~~G~~lil~g~~~~~~ 301 (343)
+|..|+++..+++.|+.+..+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999877643
No 161
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.48 E-value=2.1e+02 Score=22.86 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=4.5
Q ss_pred hhhhHHhhhhh
Q 019264 262 VLKDWILIALS 272 (343)
Q Consensus 262 ~~~pv~~~~~~ 272 (343)
|+-|++.++.+
T Consensus 82 YllPLl~li~g 92 (154)
T PRK10862 82 YMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 162
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=20.84 E-value=7.7e+02 Score=23.82 Aligned_cols=30 Identities=10% Similarity=-0.067 Sum_probs=21.5
Q ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019264 154 EIHFNIVGTLYQVTGIVAEALRLVLTQVLL 183 (343)
Q Consensus 154 ~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~ 183 (343)
+.+....+.++.+++.++|....+...-++
T Consensus 122 ~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 122 SPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333347788899999999988777765444
No 163
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.73 E-value=2.4e+02 Score=18.03 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhheeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019264 136 VFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQK 185 (343)
Q Consensus 136 ~~~~~~~~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~ 185 (343)
..++..+.++|+++...+.+ |.+...++....|.+.-..|+.+++
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888899988876643 5666777777778777777776553
No 164
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.56 E-value=2e+02 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 019264 105 SVAFIQMLKALMPVATFFMAVLC 127 (343)
Q Consensus 105 ~~~~~~ii~~~~Pv~~~~ls~l~ 127 (343)
+.=.++.+.+..|+++++++.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788888888877665
No 165
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=20.28 E-value=7.1e+02 Score=23.20 Aligned_cols=64 Identities=6% Similarity=0.051 Sum_probs=28.4
Q ss_pred HhhhCCCCCChHHHHHhhhHHHHHHHHHHHHhhccCchhhccchhhHHHHHHHHHHHHHHHHHH
Q 019264 182 LLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSI 245 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 245 (343)
+.+|-++++..+.++.-...+-...+....+..|..+--..+--....+++.+|+.+.......
T Consensus 64 lA~~~GeP~GtliLtlsv~~iEv~li~~~Ml~g~~~~tlaRDtvfa~vMi~~nGilGl~ll~GG 127 (366)
T PRK10599 64 LAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVGFSLLLGG 127 (366)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3444455566555554444444322222222222211112222233456777777777655554
Done!