Query 019264
Match_columns 343
No_of_seqs 153 out of 1307
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.5E-07 5.2E-12 72.7 5.4 67 236-303 38-105 (137)
2 3b5d_A Multidrug transporter E 98.5 1.8E-06 6.2E-11 64.3 10.7 71 84-154 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.4 1E-06 3.4E-11 68.1 8.0 70 84-153 34-104 (137)
4 3b5d_A Multidrug transporter E 98.0 3.1E-05 1.1E-09 57.5 8.2 63 239-302 41-104 (110)
5 3l1l_A Arginine/agmatine antip 62.4 30 0.001 31.2 8.8 22 284-305 409-430 (445)
6 3rko_J NADH-quinone oxidoreduc 18.6 3.3E+02 0.011 21.4 6.6 24 269-293 127-150 (184)
7 3l1l_A Arginine/agmatine antip 14.9 6E+02 0.02 22.3 9.3 15 159-173 411-425 (445)
8 4djk_A Probable glutamate/gamm 12.4 7.5E+02 0.026 22.1 11.7 12 288-299 451-462 (511)
9 2jp3_A FXYD domain-containing 11.5 3.3E+02 0.011 17.4 3.9 34 286-319 23-56 (67)
10 2jo1_A Phospholemman; FXYD1, N 10.9 3.5E+02 0.012 17.5 4.2 36 286-321 22-57 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=1.5e-07 Score=72.74 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH-hhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHhh
Q 019264 236 LCALALNFSIFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~si~-~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~~ 303 (343)
++....++.+..++++.++..+..+ ..+.|+.++++|++++||+ +|+.+++|++++++|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445556778999999988887 8999999999999999887 99999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.46 E-value=1.8e-06 Score=64.32 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeecc
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE 154 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~ 154 (343)
+...++++....+...++++.|.+.+..+ ....|+++.+++++++||++++.+++++.++++|+.++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566788899999999999999999888 899999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=1e-06 Score=68.12 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeec
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~ 153 (343)
+...++++....+.+.++++.|++.+..+ .++.|++++++++++++|++++.+++|+.++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566788899999999999999999888 89999999999999999999999999999999999987643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.97 E-value=3.1e-05 Score=57.53 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH-hhhhhHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHh
Q 019264 239 LALNFSIFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~si~-~~~~pv~~~~~~~~~~~e~~~s~~~~~G~~lil~g~~~~~~~ 302 (343)
....+....++++.+..++..+ ..+.|+.+.+.+++++||+ +|+.+++|+++++.|++..+..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 3344455667999999999777 8999999999999999887 9999999999999999987643
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=62.45 E-value=30 Score=31.18 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q 019264 284 LNIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 284 ~~~~G~~lil~g~~~~~~~~~~ 305 (343)
..+.|..+++.|..+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566888889999888776544
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=18.56 E-value=3.3e+02 Score=21.38 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=16.1
Q ss_pred hhhhhhccCCCccchhhHHHHHHHH
Q 019264 269 IALSTVIFPESTITGLNIIGYAIAL 293 (343)
Q Consensus 269 ~~~~~~~~~e~~~s~~~~~G~~lil 293 (343)
--+|..++++. +=+-+++|..+..
T Consensus 127 ~~iG~~Lft~Y-~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPY-VLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34677777665 7777788776653
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=14.93 E-value=6e+02 Score=22.29 Aligned_cols=15 Identities=7% Similarity=-0.175 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEA 173 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a 173 (343)
..|..+.+.+...|.
T Consensus 411 ~~~~~~~~~g~~~y~ 425 (445)
T 3l1l_A 411 MWSFVTLMVITAMYA 425 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544443
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=12.40 E-value=7.5e+02 Score=22.14 Aligned_cols=12 Identities=0% Similarity=-0.078 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 019264 288 GYAIALCGVVMY 299 (343)
Q Consensus 288 G~~lil~g~~~~ 299 (343)
+..+++.++.++
T Consensus 451 ~~~~~~~~i~~~ 462 (511)
T 4djk_A 451 VSFLVVLALPFI 462 (511)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.51 E-value=3.3e+02 Score=17.43 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q 019264 286 IIGYAIALCGVVMYNYIKVKDVRASSQLPAESIP 319 (343)
Q Consensus 286 ~~G~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (343)
+.+.++.++|+++..-.+-+.+..+++++...+.
T Consensus 23 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a 56 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKV 56 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTS
T ss_pred hhHHHHHHHHHHHHHcCcccccCCCCCCCCCccC
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.94 E-value=3.5e+02 Score=17.46 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcc
Q 019264 286 IIGYAIALCGVVMYNYIKVKDVRASSQLPAESIPDR 321 (343)
Q Consensus 286 ~~G~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (343)
+.+.++.++|+++..-.+-+-+..+++.+-+.+.+.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~ 57 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccc
Done!