Query 019264
Match_columns 343
No_of_seqs 153 out of 1307
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 13:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019264.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019264hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 23.6 37 0.0027 15.7 2.9 17 159-175 2-18 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 8.1 4.9E+02 0.036 20.9 21.0 44 126-171 248-292 (383)
3 d1iwga8 f.35.1.1 (A:513-566,A: 7.1 4.2E+02 0.03 19.2 13.1 29 267-296 96-124 (222)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 5.4 2.9E+02 0.021 17.2 3.6 21 285-305 35-55 (100)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.0 5.7E+02 0.042 15.9 3.5 18 287-304 43-60 (107)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 2.8 1.9E+02 0.014 17.9 0.7 16 290-305 29-44 (91)
7 d1ffta_ f.24.1.1 (A:) Cytochro 2.7 1E+03 0.074 19.6 5.8 41 159-199 140-180 (501)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.7 9.9E+02 0.072 17.5 7.5 73 84-180 6-78 (248)
9 d3dtua1 f.24.1.1 (A:14-551) Ba 2.4 1.4E+03 0.1 19.0 6.2 43 159-201 178-220 (538)
10 d1kqfb2 f.23.22.1 (B:246-290) 2.0 6.2E+02 0.045 13.3 2.2 24 276-300 8-31 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.57 E-value=37 Score=15.74 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019264 159 IVGTLYQVTGIVAEALR 175 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~ 175 (343)
..|.+..-++.++||.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 36888888899999987
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.08 E-value=4.9e+02 Score=20.86 Aligned_cols=44 Identities=11% Similarity=-0.136 Sum_probs=20.0
Q ss_pred HhcccccchhhHHHHHHHHhhhhheeeccceehH-HHHHHHHHHHHH
Q 019264 126 LCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNI-VGTLYQVTGIVA 171 (343)
Q Consensus 126 l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~-~G~~~~l~s~~~ 171 (343)
.+.++|++...... -+++|++-++....-.++ ...+.+.++.+.
T Consensus 248 ~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i 292 (383)
T d1u7ga_ 248 WALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLA 292 (383)
T ss_dssp HHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHH
Confidence 34566776665433 233444433332222233 345555555443
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=4.2e+02 Score=19.17 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=18.9
Q ss_pred HhhhhhhhccCCCccchhhHHHHHHHHHHH
Q 019264 267 ILIALSTVIFPESTITGLNIIGYAIALCGV 296 (343)
Q Consensus 267 ~~~~~~~~~~~e~~~s~~~~~G~~lil~g~ 296 (343)
...+.+..+.|.+ ++....+|.++.+...
T Consensus 96 ~~~~~~l~~~g~~-~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 96 IGALLAATFRGLT-NDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHTTCC-BCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-hhhhhcccccchhhhh
Confidence 3455566667555 9999988877644433
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.38 E-value=2.9e+02 Score=17.20 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 019264 285 NIIGYAIALCGVVMYNYIKVK 305 (343)
Q Consensus 285 ~~~G~~lil~g~~~~~~~~~~ 305 (343)
-..++.+.+.|...|...+.|
T Consensus 35 i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 334445555566666555433
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.03 E-value=5.7e+02 Score=15.93 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019264 287 IGYAIALCGVVMYNYIKV 304 (343)
Q Consensus 287 ~G~~lil~g~~~~~~~~~ 304 (343)
.++.+.+.|...|...+.
T Consensus 43 ~~I~~~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 334444556666655443
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.81 E-value=1.9e+02 Score=17.89 Aligned_cols=16 Identities=13% Similarity=-0.107 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 019264 290 AIALCGVVMYNYIKVK 305 (343)
Q Consensus 290 ~lil~g~~~~~~~~~~ 305 (343)
++.+.|.+.|...+.|
T Consensus 29 ~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 29 VIPAILMAVGFAWKYR 44 (91)
T ss_dssp TTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhhheeee
Confidence 3344555666555544
No 7
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=2.74 E-value=1e+03 Score=19.59 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhh
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYI 199 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 199 (343)
..|..+..++....+...+.+....|+++.+.....+..+.
T Consensus 140 i~gl~l~gissil~~in~i~Ti~~~R~~gm~~~~~PLf~w~ 180 (501)
T d1ffta_ 140 IWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWA 180 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhccchhhe
Confidence 46778888888888887776666555554443333333333
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.67 E-value=9.9e+02 Score=17.51 Aligned_cols=73 Identities=7% Similarity=-0.126 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhhhhheeeccceehHHHHH
Q 019264 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTL 163 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~~ls~l~~~ek~s~~~~~~~~~~~~G~~l~~~~~~~~~~~G~~ 163 (343)
..++++..+..+.....+..-+...+. ..-+.+.+..++++.+|.-..+++- .|++
T Consensus 6 ~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~--------------------PG~~ 61 (248)
T d2r6gf1 6 SVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY--------------------PGMA 61 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH--------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh--------------------hHHH
Confidence 344555544444444444444443333 3344556666777777777666654 3555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019264 164 YQVTGIVAEALRLVLTQ 180 (343)
Q Consensus 164 ~~l~s~~~~a~~~v~~~ 180 (343)
++++-.+.=.+|+++..
T Consensus 62 ~l~~Fvi~Pi~yT~~ia 78 (248)
T d2r6gf1 62 GMGLFVLFPLVCTIAIA 78 (248)
T ss_dssp HHHHHTHHHHHHHHHGG
T ss_pred HHHHHHHHhheeEEEEE
Confidence 55555555555555543
No 9
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.36 E-value=1.4e+03 Score=18.99 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChHHHHHhhhH
Q 019264 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAP 201 (343)
Q Consensus 159 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (343)
..|..+..+|.+..++..+.+-..+|+++.+...+.+..+..+
T Consensus 178 i~~l~l~gissi~~~iN~i~Ti~~~R~~gm~~~~~Plf~w~~l 220 (538)
T d3dtua1 178 IFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIF 220 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhchHHHHHHH
Confidence 4688888888888888777765555655554444444444333
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.00 E-value=6.2e+02 Score=13.34 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=16.1
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHH
Q 019264 276 FPESTITGLNIIGYAIALCGVVMYN 300 (343)
Q Consensus 276 ~~e~~~s~~~~~G~~lil~g~~~~~ 300 (343)
+++. .-+...+|+....++.++..
T Consensus 8 WKgv-~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 8 WKGA-LKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHhh
Confidence 3344 66777788888777776643
Done!