BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019265
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 13/209 (6%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
++DVL +G A+VD DD FLE G+ KG L+N +R +L + G + +A+ GGS
Sbjct: 5 KYDVLTIGNAIVDIIARCDDSFLEENGIIKGAXNLIN-ADRAELLYSRXGPAVEAS-GGS 62
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239
N+ +A LGG+ A G V D LG + +R V F ++P+ DG
Sbjct: 63 AGNTAAGVASLGGR--------AAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL-DGHPP 113
Query: 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299
T + T D +R+ Y G + + ++++++ + EGYL++ P I +
Sbjct: 114 TARSXIFVTEDGERSXNTYLGACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIRE 173
Query: 300 ACEVAHRSGALVAVTASDVTCIERHYDDF 328
A +AH G A T SD C+ R+ +F
Sbjct: 174 AARIAHAHGRETAXTLSDSFCVHRYRSEF 202
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 11/208 (5%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
R+DVL +G A+VD +D FL + K L++ ER +L + G + +A+ GGS
Sbjct: 25 RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAXNLID-AERAELLYSRXGPALEAS-GGS 82
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTT 240
N+ +A LGGK A G+V +D LG + +R V + ++P T
Sbjct: 83 AGNTAAGVANLGGK--------AAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPT 134
Query: 241 GTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKA 300
+ T D +R+ Y G + + ++++ + EGYL++ P I
Sbjct: 135 ARSXIFVTEDGERSXNTYLGACVELGPEDVEADVVADAKVTYFEGYLWDPPRAKEAILDC 194
Query: 301 CEVAHRSGALVAVTASDVTCIERHYDDF 328
+AH+ G + T SD C++R+ +F
Sbjct: 195 ARIAHQHGREXSXTLSDSFCVDRYRGEF 222
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
+ G+G ++D S +VD DFL++ L+ + L + + + + AGGS N
Sbjct: 9 LFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQN 68
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
S+ ++ I P G +G D G + K A+V + TGT
Sbjct: 69 SI----KVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 124
Query: 245 VLTTPDAQRAMLA 257
T D R+++A
Sbjct: 125 ACITGD-NRSLIA 136
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 171 GCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAF 230
G Y+ A GG +N VA R G N+A G D +G R +L N+
Sbjct: 33 GNHYQVAFGGKGANQAVAAGRSGA--------NIAFIACTGDDSIGESVRQQLATDNIDI 84
Query: 231 CS-EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFE 289
IK +TG ++ + + + + G ++ ++ P LV + I L +
Sbjct: 85 TPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALS--PALVEA-QRERIANASALLMQ 141
Query: 290 LPDTIRTITKACEVAHRSGALVAVT 314
L + ++ A ++AH++ +VA+
Sbjct: 142 LESPLESVMAAAKIAHQNKTIVALN 166
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 113 SGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGC 172
S +++ P R V +G ++D V FL+ L++G L E+ R+ +D
Sbjct: 5 SSNSATGPMR--VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQF 61
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--F 230
+ + GGS NS+ + +L KP G A G++G DP G + + +A F
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRF 116
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFEL 290
P + +TGT VL + +R + + G + S IF Y L
Sbjct: 117 MVAPGQ--STGTCAVLIN-EKERTLCTHLGACGSFRIPENWTTFASGALIFYATAY--TL 171
Query: 291 PDTIRTITKACEVAHR-SGALVAVTASDVTCIERHYD 326
T + + AH A+ + S C+E + D
Sbjct: 172 TATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKD 208
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Query: 132 MVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALAR 191
++D S V D+FL + GLE+GT L++ ++G + + GGS N + +A+
Sbjct: 17 LLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLN-VARVAQ 75
Query: 192 LGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDA 251
+ G V G + D G + + E +G V T
Sbjct: 76 WMQQAYKGKF--VTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCIT-GK 132
Query: 252 QRAMLAYQGTSSTINYD----PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRS 307
+R ++A G ++ ++ + P +V + ++ IF G F L + + +AC A
Sbjct: 133 ERTLVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSG--FTLTVDVNHVLQACRKAREV 190
Query: 308 GALVAVTAS 316
L + S
Sbjct: 191 DGLFMINLS 199
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 113 SGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGC 172
S +++ P R V +G ++D V FL+ L++G L E+ R+ +D
Sbjct: 5 SSNSATGPMR--VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQF 61
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--F 230
+ + GGS NS+ + +L KP G A G++G DP G + + +A F
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRF 116
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFEL 290
P + +TGT VL + +R + + G + S IF Y L
Sbjct: 117 MVAPGQ--STGTCAVLIN-EKERTLCTHLGACGSFRIPEDWTTFASGALIFYATAY--TL 171
Query: 291 PDTIRTITKACEVAHR-SGALVAVTASDVTCIERHYD 326
T + + AH A+ + S C+E + D
Sbjct: 172 TATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKD 208
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 28/202 (13%)
Query: 113 SGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGC 172
S +++ P R V +G ++D V FL+ L++G L E+ R+ +D
Sbjct: 5 SSNSATGPMR--VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQF 61
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--F 230
+ + GGS NS+ + +L KP G A G++G DP G + + +A F
Sbjct: 62 NPTSLPGGSALNSVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRF 116
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQG---------------TSSTINYDPCLVNLI 275
P + +TG VL + +R + + G + + I Y
Sbjct: 117 MVAPGQ--STGVCAVLIN-EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTA 173
Query: 276 SKTNIFIVEGYLFELPDTIRTI 297
+ N F V GY +P+ I T+
Sbjct: 174 TPKNAFEVAGYAHGIPNAIFTL 195
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 16/217 (7%)
Query: 113 SGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGC 172
S +++ P R V +G ++D V FL+ L++G L E+ R+ +D
Sbjct: 25 SSNSATGPMR--VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQF 81
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--F 230
+ + GGS NS+ + +L KP G A G++G DP G + + +A F
Sbjct: 82 NPTSLPGGSALNSVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRF 136
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFEL 290
P + +TG VL + +R + + G + S IF Y L
Sbjct: 137 MVAPGQ--STGVCAVLIN-EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAY--TL 191
Query: 291 PDTIRTITKACEVAHR-SGALVAVTASDVTCIERHYD 326
T + + AH A+ + S C+E + D
Sbjct: 192 TATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKD 228
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 38/154 (24%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLG---------------G 217
Y GGS +N V L+RLG K VA+ +G+D G G
Sbjct: 48 EYTRHFGGSPANIAVNLSRLGKK--------VALISRLGADAFGNYLLDVLKGEQIITDG 99
Query: 218 FYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISK 277
+ K RR + + S+ + TPD L Y+ + D + LI +
Sbjct: 100 IQQDKERRTTIVYVSKSTR-----------TPD----WLPYREADXYLQEDDIIFELIKR 144
Query: 278 TNIFIVEGYLFELPDTIRTITKACEVAHRSGALV 311
+ +F + ++ T KA A G +V
Sbjct: 145 SKVFHLSTFILSRKPARDTAIKAFNYAREQGKIV 178
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAF-CSEPIKD 237
GG +N V ARLG +M VG D G Y L++ +++ + KD
Sbjct: 61 GGKGANQCVQAARLGAM--------TSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKD 112
Query: 238 GTTGTVIVLTTPDAQRAMLAYQGTSSTINYDP--CLVNLISKTNIFIVEGYLFELPDTIR 295
TGT ++ + Q ++ G + +N + N+IS+ + + +L T
Sbjct: 113 AATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVC-----QLEITPA 167
Query: 296 TITKACEVAHRSG 308
T +A +A RSG
Sbjct: 168 TSLEALTMARRSG 180
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
++GLG ++D S +V+ D L + ++ L + ++ + AGGS+ N
Sbjct: 26 LVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQN 85
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
SL + +P G VG D + V + TGT
Sbjct: 86 SLRVAQWILQRP-----RTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCA 140
Query: 245 VLTTPDAQRAMLA 257
VL T QR++ A
Sbjct: 141 VLVT-GTQRSLCA 152
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG 238
GG+ N VALARLG + V G VG D LG +LR V G
Sbjct: 33 GGAEVNVAVALARLG--------VKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPG 84
Query: 239 TTGTVIVLTTPDAQRAMLAYQGTSSTINYDP 269
TG + P Q + Y+ S+ P
Sbjct: 85 FTGLYLREYLPLGQGRVFYYRKGSAGSALAP 115
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 207 TGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTIN 266
+G+ G DP RA LR V G +GT I++ A+ +L G ++ +
Sbjct: 76 SGAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTVLVAPGANAHLT 135
Query: 267 YDPCLV 272
P V
Sbjct: 136 PVPSAV 141
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV 228
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENV 74
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV 228
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENV 74
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM--LAYQGTSSTIN 266
+ D T+ +IV T D +R+ L + G + ++
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS 132
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM--LAYQGTSSTIN 266
+ D T+ +IV T D +R+ L + G + ++
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS 132
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 168 AMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202
A DG +Y +A G SN A+A G KP+ P L
Sbjct: 113 ATDGTTYCLSASGQGSNGNAAMASQGCKPLALPEL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,463,751
Number of Sequences: 62578
Number of extensions: 301431
Number of successful extensions: 598
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 23
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)