Query 019265
Match_columns 343
No_of_seqs 171 out of 1141
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02813 pfkB-type carbohydrat 100.0 8.4E-34 1.8E-38 284.9 22.2 241 102-342 49-290 (426)
2 PRK15074 inosine/guanosine kin 100.0 1.7E-31 3.8E-36 268.3 19.9 216 119-342 30-255 (434)
3 PLN02379 pfkB-type carbohydrat 100.0 1E-29 2.2E-34 250.8 18.6 213 118-342 15-240 (367)
4 PTZ00247 adenosine kinase; Pro 100.0 1.3E-27 2.9E-32 232.7 17.4 213 120-342 3-222 (345)
5 KOG2854 Possible pfkB family c 99.9 3.7E-27 8.1E-32 224.5 14.4 210 124-341 8-221 (343)
6 cd01168 adenosine_kinase Adeno 99.9 1.9E-26 4.1E-31 220.8 18.9 208 122-342 1-208 (312)
7 PLN02967 kinase 99.9 1.5E-24 3.2E-29 223.8 20.8 199 124-342 198-404 (581)
8 PLN02543 pfkB-type carbohydrat 99.9 2.5E-24 5.5E-29 219.4 19.9 203 121-342 124-335 (496)
9 PLN02548 adenosine kinase 99.9 1.8E-24 3.9E-29 209.2 16.8 204 128-342 1-211 (332)
10 cd01944 YegV_kinase_like YegV- 99.9 3.9E-23 8.4E-28 195.4 19.7 188 124-342 1-189 (289)
11 PRK11142 ribokinase; Provision 99.9 4E-23 8.7E-28 196.6 18.9 181 123-342 3-186 (306)
12 cd01174 ribokinase Ribokinase 99.9 7.8E-23 1.7E-27 192.9 19.5 180 124-342 1-183 (292)
13 PLN02323 probable fructokinase 99.9 6E-23 1.3E-27 198.4 19.1 191 120-342 8-205 (330)
14 PTZ00292 ribokinase; Provision 99.9 1.1E-22 2.4E-27 196.0 19.5 187 122-342 15-206 (326)
15 cd01942 ribokinase_group_A Rib 99.9 1.4E-22 3.1E-27 189.9 19.2 181 124-342 1-182 (279)
16 COG0524 RbsK Sugar kinases, ri 99.9 1.7E-22 3.6E-27 193.3 18.8 189 124-342 1-191 (311)
17 cd01166 KdgK 2-keto-3-deoxyglu 99.9 2.3E-22 5E-27 189.7 17.5 186 124-342 1-193 (294)
18 cd01939 Ketohexokinase Ketohex 99.9 8.5E-22 1.9E-26 186.8 19.8 179 124-342 1-187 (290)
19 cd01167 bac_FRK Fructokinases 99.9 1.4E-21 3E-26 184.7 19.1 183 124-342 1-189 (295)
20 PLN02341 pfkB-type carbohydrat 99.9 1.7E-21 3.8E-26 198.1 20.2 204 119-342 69-293 (470)
21 cd01945 ribokinase_group_B Rib 99.9 8.3E-21 1.8E-25 178.7 19.7 179 124-342 1-180 (284)
22 PRK09434 aminoimidazole ribosi 99.9 9.8E-21 2.1E-25 180.5 19.1 179 123-342 3-188 (304)
23 cd01940 Fructoselysine_kinase_ 99.9 9.2E-21 2E-25 176.8 18.0 167 124-342 1-168 (264)
24 cd01947 Guanosine_kinase_like 99.9 3.4E-20 7.3E-25 173.3 18.6 173 124-342 1-173 (265)
25 TIGR02152 D_ribokin_bact ribok 99.8 7.7E-20 1.7E-24 173.0 18.8 176 129-342 1-179 (293)
26 PF00294 PfkB: pfkB family car 99.8 1.5E-20 3.3E-25 177.4 13.4 186 123-342 2-190 (301)
27 PRK09813 fructoselysine 6-kina 99.8 6E-20 1.3E-24 171.7 17.0 164 123-341 1-165 (260)
28 PRK09850 pseudouridine kinase; 99.8 6.6E-20 1.4E-24 176.1 17.5 182 121-342 3-188 (313)
29 cd01941 YeiC_kinase_like YeiC- 99.8 1.1E-19 2.4E-24 171.2 16.4 181 124-342 1-184 (288)
30 cd01943 MAK32 MAK32 kinase. M 99.8 1.7E-20 3.7E-25 182.4 10.8 178 124-342 1-188 (328)
31 cd01172 RfaE_like RfaE encodes 99.8 8.2E-19 1.8E-23 166.7 18.8 181 124-342 1-189 (304)
32 KOG2855 Ribokinase [Carbohydra 99.8 4.3E-19 9.4E-24 170.8 15.9 195 118-340 5-206 (330)
33 PRK09954 putative kinase; Prov 99.8 1.1E-18 2.3E-23 171.4 17.5 181 121-342 56-241 (362)
34 TIGR03828 pfkB 1-phosphofructo 99.8 6.6E-18 1.4E-22 160.5 19.2 173 127-341 4-183 (304)
35 TIGR02198 rfaE_dom_I rfaE bifu 99.8 1.1E-17 2.4E-22 160.1 18.2 184 119-342 4-198 (315)
36 PRK13508 tagatose-6-phosphate 99.8 2.5E-17 5.4E-22 157.9 19.3 177 125-342 3-185 (309)
37 TIGR01231 lacC tagatose-6-phos 99.8 2.3E-17 4.9E-22 158.1 18.2 179 126-342 3-185 (309)
38 PRK11316 bifunctional heptose 99.8 1.8E-17 4E-22 168.1 17.1 188 118-342 6-196 (473)
39 cd01164 FruK_PfkB_like 1-phosp 99.7 6.9E-17 1.5E-21 152.9 18.9 175 126-342 4-185 (289)
40 TIGR03168 1-PFK hexose kinase, 99.7 5E-17 1.1E-21 154.9 18.0 172 129-342 6-184 (303)
41 PRK09513 fruK 1-phosphofructok 99.7 1.2E-16 2.6E-21 153.3 19.9 178 122-341 3-187 (312)
42 PRK10294 6-phosphofructokinase 99.7 1.2E-16 2.6E-21 153.2 19.0 177 125-342 4-188 (309)
43 cd01937 ribokinase_group_D Rib 99.7 2E-16 4.3E-21 146.9 16.9 162 124-342 1-163 (254)
44 PLN02630 pfkB-type carbohydrat 99.7 8.7E-16 1.9E-20 150.2 17.8 168 121-342 10-189 (335)
45 cd01946 ribokinase_group_C Rib 99.6 2.1E-15 4.6E-20 142.1 14.2 168 124-342 1-171 (277)
46 COG2870 RfaE ADP-heptose synth 99.6 1.1E-13 2.4E-18 135.5 16.8 191 116-335 4-206 (467)
47 KOG2947 Carbohydrate kinase [C 99.5 6E-13 1.3E-17 122.8 16.5 184 122-342 4-193 (308)
48 COG1105 FruK Fructose-1-phosph 99.4 2.7E-12 5.9E-17 123.6 15.0 169 129-332 7-193 (310)
49 cd00287 ribokinase_pfkB_like r 99.4 7E-12 1.5E-16 111.0 12.8 117 124-342 1-117 (196)
50 KOG3009 Predicted carbohydrate 98.2 4E-06 8.7E-11 84.0 8.2 121 123-319 341-461 (614)
51 PRK14039 ADP-dependent glucoki 94.8 0.73 1.6E-05 47.3 13.9 156 173-341 85-285 (453)
52 PRK07105 pyridoxamine kinase; 92.2 0.23 5E-06 47.2 5.2 64 277-342 75-145 (284)
53 cd01938 ADPGK_ADPPFK ADP-depen 91.1 2.6 5.6E-05 43.3 11.6 157 174-341 101-277 (445)
54 cd01173 pyridoxal_pyridoxamine 90.6 0.48 1E-05 44.0 5.4 65 276-342 71-144 (254)
55 TIGR00687 pyridox_kin pyridoxa 90.3 0.51 1.1E-05 44.9 5.4 67 274-342 71-146 (286)
56 PRK12412 pyridoxal kinase; Rev 89.8 1.7 3.6E-05 41.1 8.5 124 205-342 3-140 (268)
57 TIGR02045 P_fruct_ADP ADP-spec 89.7 4.4 9.5E-05 41.6 11.8 154 176-341 86-283 (446)
58 PF04587 ADP_PFK_GK: ADP-speci 89.6 0.77 1.7E-05 47.1 6.4 154 176-341 92-283 (444)
59 PRK03979 ADP-specific phosphof 88.6 3.6 7.9E-05 42.4 10.3 155 175-341 98-297 (463)
60 PRK12413 phosphomethylpyrimidi 88.0 0.91 2E-05 42.2 5.2 126 203-342 3-137 (253)
61 cd01170 THZ_kinase 4-methyl-5- 86.8 1.1 2.4E-05 42.0 5.0 82 260-342 31-115 (242)
62 PRK08176 pdxK pyridoxal-pyrido 86.5 1.3 2.8E-05 42.3 5.4 66 275-342 86-160 (281)
63 PF09026 CENP-B_dimeris: Centr 84.7 0.29 6.2E-06 39.6 0.0 14 81-94 9-22 (101)
64 cd01169 HMPP_kinase 4-amino-5- 83.8 3.1 6.8E-05 38.0 6.5 61 277-342 68-136 (242)
65 PTZ00344 pyridoxal kinase; Pro 83.2 2.3 5E-05 40.8 5.5 62 280-342 79-147 (296)
66 PRK06427 bifunctional hydroxy- 83.0 3.1 6.7E-05 38.9 6.2 61 277-342 73-141 (266)
67 PF08543 Phos_pyr_kin: Phospho 81.9 4.9 0.00011 37.5 7.1 61 277-342 60-127 (246)
68 PRK10076 pyruvate formate lyas 81.7 4 8.6E-05 37.7 6.3 58 279-342 40-97 (213)
69 PF06524 NOA36: NOA36 protein; 81.3 2 4.4E-05 40.8 4.2 23 24-46 216-238 (314)
70 KOG1832 HIV-1 Vpr-binding prot 80.5 0.73 1.6E-05 50.5 1.1 17 86-102 1401-1417(1516)
71 PRK05756 pyridoxamine kinase; 79.8 3.5 7.7E-05 39.1 5.4 66 275-342 72-146 (286)
72 TIGR00097 HMP-P_kinase phospho 79.4 4.9 0.00011 37.5 6.2 61 277-342 67-135 (254)
73 PRK08573 phosphomethylpyrimidi 77.1 3.5 7.6E-05 42.2 4.8 49 294-342 83-138 (448)
74 PRK09355 hydroxyethylthiazole 75.4 5.8 0.00013 37.5 5.5 82 260-342 36-120 (263)
75 PLN02978 pyridoxal kinase 75.2 5 0.00011 38.9 5.1 63 278-342 87-157 (308)
76 PRK14038 ADP-dependent glucoki 73.2 55 0.0012 33.8 12.1 95 246-341 189-291 (453)
77 PRK06702 O-acetylhomoserine am 72.3 39 0.00085 34.5 11.0 105 173-317 78-186 (432)
78 PRK12616 pyridoxal kinase; Rev 68.8 12 0.00027 35.3 6.1 61 277-342 74-142 (270)
79 TIGR00694 thiM hydroxyethylthi 68.6 9.5 0.00021 35.8 5.2 82 260-342 31-115 (249)
80 cd01171 YXKO-related B.subtili 66.8 9.5 0.00021 35.4 4.8 64 273-342 73-136 (254)
81 PRK08114 cystathionine beta-ly 65.0 52 0.0011 33.3 9.9 104 173-317 79-188 (395)
82 COG2145 ThiM Hydroxyethylthiaz 60.2 21 0.00045 34.2 5.7 75 260-335 37-112 (265)
83 PF02110 HK: Hydroxyethylthiaz 59.8 33 0.00072 32.5 7.0 69 272-341 44-114 (246)
84 COG1180 PflA Pyruvate-formate 59.7 35 0.00077 32.3 7.3 60 277-342 83-142 (260)
85 TIGR02826 RNR_activ_nrdG3 anae 58.8 34 0.00074 29.6 6.5 54 279-341 63-116 (147)
86 PRK08133 O-succinylhomoserine 58.7 84 0.0018 31.3 10.2 107 173-317 78-185 (390)
87 PF00919 UPF0004: Uncharacteri 58.4 43 0.00094 27.0 6.6 61 275-339 34-97 (98)
88 PF10446 DUF2457: Protein of u 58.2 4.9 0.00011 41.0 1.2 12 294-305 207-218 (458)
89 PRK06728 aspartate-semialdehyd 57.7 77 0.0017 31.6 9.5 93 202-318 6-101 (347)
90 PRK07050 cystathionine beta-ly 54.9 2.1E+02 0.0046 28.6 12.3 107 173-317 82-189 (394)
91 COG0136 Asd Aspartate-semialde 53.8 1.4E+02 0.003 29.7 10.4 94 203-317 3-98 (334)
92 COG0351 ThiD Hydroxymethylpyri 53.7 18 0.00039 34.6 4.2 50 293-342 83-140 (263)
93 PRK09028 cystathionine beta-ly 53.3 1.6E+02 0.0034 29.7 11.1 40 276-317 145-185 (394)
94 PRK07582 cystathionine gamma-l 53.3 95 0.0021 30.6 9.5 104 173-317 67-171 (366)
95 PRK05613 O-acetylhomoserine am 52.9 1.3E+02 0.0029 30.6 10.7 60 277-342 155-214 (437)
96 PRK05967 cystathionine beta-ly 52.5 2.1E+02 0.0047 28.8 11.9 102 175-317 83-188 (395)
97 cd00614 CGS_like CGS_like: Cys 51.8 1.2E+02 0.0025 29.9 9.8 39 277-317 125-164 (369)
98 KOG1832 HIV-1 Vpr-binding prot 50.1 7.2 0.00016 43.2 0.9 19 80-98 1398-1417(1516)
99 PRK05671 aspartate-semialdehyd 49.9 1.2E+02 0.0027 29.9 9.5 92 203-318 6-99 (336)
100 PRK08134 O-acetylhomoserine am 49.8 1.1E+02 0.0025 31.0 9.6 40 276-317 148-188 (433)
101 KOG0468 U5 snRNP-specific prot 47.9 4.2E+02 0.0092 29.3 13.4 74 239-316 182-257 (971)
102 PF01118 Semialdhyde_dh: Semia 47.7 26 0.00057 28.7 3.8 95 207-318 2-99 (121)
103 PRK05968 hypothetical protein; 47.6 2.6E+02 0.0055 27.8 11.6 42 275-317 145-186 (389)
104 PRK06901 aspartate-semialdehyd 47.4 86 0.0019 31.0 7.9 89 203-317 5-96 (322)
105 KOG3974 Predicted sugar kinase 47.2 42 0.0009 32.4 5.4 59 267-325 91-149 (306)
106 PRK06598 aspartate-semialdehyd 46.8 1.1E+02 0.0024 30.7 8.7 95 203-318 3-100 (369)
107 PF10446 DUF2457: Protein of u 46.3 9.8 0.00021 38.9 1.2 17 207-223 197-214 (458)
108 PRK08248 O-acetylhomoserine am 45.3 1.7E+02 0.0037 29.8 10.0 104 173-317 81-188 (431)
109 COG0269 SgbH 3-hexulose-6-phos 43.4 97 0.0021 28.9 7.1 59 275-340 78-136 (217)
110 PF04931 DNA_pol_phi: DNA poly 43.3 11 0.00025 41.3 1.2 11 31-41 607-617 (784)
111 PRK04169 geranylgeranylglycery 43.0 1.1E+02 0.0025 28.6 7.7 41 275-318 30-70 (232)
112 PLN02898 HMP-P kinase/thiamin- 42.4 50 0.0011 34.2 5.7 61 277-342 78-146 (502)
113 TIGR01328 met_gam_lyase methio 42.4 1.7E+02 0.0037 29.2 9.4 40 276-317 143-183 (391)
114 COG2240 PdxK Pyridoxal/pyridox 42.3 47 0.001 32.2 5.1 68 273-342 69-144 (281)
115 TIGR01325 O_suc_HS_sulf O-succ 42.3 2.4E+02 0.0052 27.9 10.4 39 277-317 139-178 (380)
116 PRK07810 O-succinylhomoserine 41.7 2.4E+02 0.0052 28.3 10.4 107 173-317 87-194 (403)
117 TIGR01745 asd_gamma aspartate- 41.3 1.3E+02 0.0029 30.2 8.3 93 203-318 2-99 (366)
118 PRK08249 cystathionine gamma-s 41.2 1.7E+02 0.0037 29.3 9.2 40 277-318 149-189 (398)
119 TIGR01324 cysta_beta_ly_B cyst 40.7 3.3E+02 0.0072 27.0 11.1 41 276-317 134-174 (377)
120 PLN02383 aspartate semialdehyd 39.6 2.1E+02 0.0045 28.4 9.4 92 203-318 9-102 (344)
121 PF03066 Nucleoplasmin: Nucleo 39.2 9.9 0.00022 33.2 0.0 12 33-44 30-41 (149)
122 PF04230 PS_pyruv_trans: Polys 39.0 86 0.0019 27.9 6.1 124 210-340 2-133 (286)
123 PRK09330 cell division protein 38.6 1.2E+02 0.0025 30.8 7.5 142 176-342 19-167 (384)
124 PRK11145 pflA pyruvate formate 38.5 98 0.0021 28.5 6.5 47 294-342 85-131 (246)
125 PF02044 Bombesin: Bombesin-li 38.5 9.9 0.00021 20.0 -0.1 9 47-55 5-13 (14)
126 COG1646 Predicted phosphate-bi 38.0 1.5E+02 0.0033 28.0 7.6 54 274-340 38-92 (240)
127 PRK08247 cystathionine gamma-s 37.8 3.5E+02 0.0076 26.5 10.7 40 276-317 135-175 (366)
128 KOG0943 Predicted ubiquitin-pr 36.4 18 0.00038 41.7 1.3 22 86-107 1742-1763(3015)
129 PRK09517 multifunctional thiam 36.3 44 0.00095 36.7 4.4 61 277-342 310-377 (755)
130 PRK05939 hypothetical protein; 36.0 4.2E+02 0.0091 26.5 11.1 40 276-317 130-170 (397)
131 PRK07324 transaminase; Validat 34.8 4.4E+02 0.0096 25.7 10.9 40 276-317 152-195 (373)
132 cd01483 E1_enzyme_family Super 34.8 2.4E+02 0.0052 23.4 7.9 37 272-314 84-120 (143)
133 TIGR01326 OAH_OAS_sulfhy OAH/O 34.4 3.4E+02 0.0073 27.3 10.2 39 277-317 142-181 (418)
134 PRK05994 O-acetylhomoserine am 34.2 3.5E+02 0.0076 27.3 10.3 39 277-317 148-187 (427)
135 TIGR00334 5S_RNA_mat_M5 ribonu 34.0 1.5E+02 0.0033 26.7 6.6 59 277-341 22-80 (174)
136 PF00265 TK: Thymidine kinase; 34.0 3.2E+02 0.007 24.2 8.9 127 205-339 5-134 (176)
137 KOG4813 Translation initiation 33.7 33 0.00071 32.4 2.5 46 78-123 13-58 (248)
138 COG4809 Archaeal ADP-dependent 33.5 4.1E+02 0.0088 27.3 10.1 65 272-336 220-294 (466)
139 PF10087 DUF2325: Uncharacteri 33.4 1.9E+02 0.0041 22.7 6.6 78 209-316 4-83 (97)
140 TIGR01768 GGGP-family geranylg 33.3 1.1E+02 0.0024 28.6 5.9 40 276-318 26-65 (223)
141 PF09673 TrbC_Ftype: Type-F co 32.9 1.5E+02 0.0032 24.5 6.0 27 288-316 6-32 (113)
142 PRK13018 cell division protein 32.9 1.6E+02 0.0035 29.7 7.5 142 176-341 34-181 (378)
143 PRK14713 multifunctional hydro 32.9 54 0.0012 34.3 4.3 61 277-342 98-165 (530)
144 TIGR00065 ftsZ cell division p 32.4 1.6E+02 0.0036 29.2 7.3 143 175-341 22-170 (349)
145 KOG2652 RNA polymerase II tran 32.3 46 0.00099 33.0 3.3 14 108-121 289-302 (348)
146 PTZ00347 phosphomethylpyrimidi 32.2 61 0.0013 33.6 4.5 118 205-342 232-368 (504)
147 TIGR01329 cysta_beta_ly_E cyst 31.8 3.5E+02 0.0077 26.7 9.7 40 276-317 130-170 (378)
148 KOG3064 RNA-binding nuclear pr 31.7 23 0.00051 33.8 1.2 14 100-113 249-262 (303)
149 TIGR02491 NrdG anaerobic ribon 31.4 1.1E+02 0.0023 26.5 5.2 61 279-339 65-127 (154)
150 PRK06234 methionine gamma-lyas 31.3 3.3E+02 0.0071 27.2 9.4 40 276-317 148-190 (400)
151 TIGR02494 PFLE_PFLC glycyl-rad 31.2 1.5E+02 0.0033 28.0 6.7 45 294-342 140-184 (295)
152 PRK06444 prephenate dehydrogen 31.0 1.7E+02 0.0036 26.7 6.6 25 204-230 3-27 (197)
153 PRK04296 thymidine kinase; Pro 30.7 1.5E+02 0.0033 26.3 6.3 60 277-339 78-137 (190)
154 PF04889 Cwf_Cwc_15: Cwf15/Cwc 29.7 18 0.00039 34.3 0.0 18 103-120 141-158 (244)
155 PLN02242 methionine gamma-lyas 29.6 3.6E+02 0.0078 27.2 9.4 38 278-317 164-202 (418)
156 PRK08040 putative semialdehyde 29.6 3.3E+02 0.0072 26.9 8.9 92 203-318 6-99 (336)
157 TIGR02742 TrbC_Ftype type-F co 29.3 2.1E+02 0.0045 24.4 6.5 31 281-316 3-33 (130)
158 COG1618 Predicted nucleotide k 29.1 4.4E+02 0.0094 23.9 9.5 112 203-316 7-138 (179)
159 cd01485 E1-1_like Ubiquitin ac 29.0 4.2E+02 0.0092 23.7 9.6 38 272-315 108-145 (198)
160 TIGR01769 GGGP geranylgeranylg 29.0 1.5E+02 0.0034 27.2 6.1 39 277-318 24-63 (205)
161 PF05014 Nuc_deoxyrib_tr: Nucl 28.6 1.3E+02 0.0029 24.1 5.1 61 281-343 1-70 (113)
162 TIGR00196 yjeF_cterm yjeF C-te 28.4 80 0.0017 29.6 4.3 41 273-317 88-128 (272)
163 PRK07504 O-succinylhomoserine 28.4 3.6E+02 0.0079 26.9 9.2 40 276-317 149-189 (398)
164 TIGR01125 MiaB-like tRNA modif 28.2 1.8E+02 0.0038 29.5 6.9 60 276-339 35-94 (430)
165 KOG1824 TATA-binding protein-i 28.1 24 0.00053 39.5 0.7 20 298-317 545-564 (1233)
166 TIGR01296 asd_B aspartate-semi 27.4 3.4E+02 0.0074 26.7 8.6 90 204-317 2-93 (339)
167 TIGR02493 PFLA pyruvate format 27.4 2.6E+02 0.0056 25.3 7.4 47 294-342 80-126 (235)
168 PF10087 DUF2325: Uncharacteri 27.2 2.5E+02 0.0054 22.0 6.4 55 280-342 2-56 (97)
169 PF03841 SelA: L-seryl-tRNA se 27.0 60 0.0013 32.6 3.2 46 296-341 158-210 (367)
170 PRK08861 cystathionine gamma-s 26.8 4.5E+02 0.0098 26.3 9.5 41 276-318 137-178 (388)
171 PRK14874 aspartate-semialdehyd 26.6 3.6E+02 0.0078 26.3 8.6 91 203-318 3-96 (334)
172 PRK07811 cystathionine gamma-s 26.4 3.2E+02 0.0069 27.1 8.3 60 276-342 145-205 (388)
173 COG0489 Mrp ATPases involved i 26.3 1.7E+02 0.0037 27.7 6.1 35 182-227 75-109 (265)
174 PRK07812 O-acetylhomoserine am 26.0 4.7E+02 0.01 26.7 9.6 40 276-317 154-194 (436)
175 cd02201 FtsZ_type1 FtsZ is a G 25.8 2.5E+02 0.0055 27.0 7.3 141 176-341 6-153 (304)
176 PRK08574 cystathionine gamma-s 25.7 6.2E+02 0.013 25.1 10.3 39 277-317 137-176 (385)
177 TIGR03576 pyridox_MJ0158 pyrid 25.7 5.8E+02 0.013 24.9 9.9 42 276-317 135-177 (346)
178 PF00070 Pyr_redox: Pyridine n 25.0 1.4E+02 0.0031 22.2 4.3 43 182-232 11-59 (80)
179 TIGR02990 ectoine_eutA ectoine 24.9 2.6E+02 0.0056 26.2 6.9 43 184-234 110-152 (239)
180 smart00642 Aamy Alpha-amylase 24.9 94 0.002 27.3 3.8 24 294-317 69-92 (166)
181 KOG3158 HSP90 co-chaperone p23 24.0 70 0.0015 28.8 2.7 42 69-114 135-176 (180)
182 PF02593 dTMP_synthase: Thymid 23.9 5.9E+02 0.013 23.7 9.1 59 275-340 49-109 (217)
183 PRK06767 methionine gamma-lyas 23.2 5.6E+02 0.012 25.3 9.4 40 276-317 145-185 (386)
184 KOG1834 Calsyntenin [Extracell 23.1 70 0.0015 34.6 2.9 44 85-128 899-943 (952)
185 PRK13307 bifunctional formalde 23.0 2.9E+02 0.0063 28.0 7.3 56 277-340 250-305 (391)
186 COG0169 AroE Shikimate 5-dehyd 22.9 6.8E+02 0.015 24.1 9.5 46 174-228 130-175 (283)
187 PF00128 Alpha-amylase: Alpha 22.9 94 0.002 28.6 3.6 25 293-317 50-74 (316)
188 KOG4184 Predicted sugar kinase 22.7 1.1E+02 0.0024 30.8 4.1 156 173-340 137-307 (478)
189 PRK15447 putative protease; Pr 22.6 3.7E+02 0.0081 25.9 7.8 59 276-334 27-87 (301)
190 PRK15452 putative protease; Pr 22.6 2.7E+02 0.0059 28.6 7.1 48 270-317 16-68 (443)
191 PLN02509 cystathionine beta-ly 22.5 8.4E+02 0.018 25.2 10.7 59 277-342 217-276 (464)
192 TIGR00927 2A1904 K+-dependent 22.2 61 0.0013 36.6 2.4 8 78-85 854-861 (1096)
193 PRK07503 methionine gamma-lyas 22.0 5.5E+02 0.012 25.6 9.1 39 277-317 150-189 (403)
194 PRK13237 tyrosine phenol-lyase 21.9 1.9E+02 0.004 30.1 5.7 49 294-342 197-258 (460)
195 PF01212 Beta_elim_lyase: Beta 21.7 1.6E+02 0.0034 28.4 4.9 80 263-342 104-193 (290)
196 PRK13762 tRNA-modifying enzyme 21.7 3.4E+02 0.0075 26.5 7.4 58 278-342 130-187 (322)
197 TIGR01769 GGGP geranylgeranylg 21.6 6.3E+02 0.014 23.1 9.8 93 240-340 106-204 (205)
198 PRK11430 putative CoA-transfer 21.5 94 0.002 31.2 3.4 33 306-342 69-101 (381)
199 PRK09722 allulose-6-phosphate 21.5 2.6E+02 0.0056 26.2 6.1 56 276-340 81-136 (229)
200 PRK13730 conjugal transfer pil 21.4 2.8E+02 0.006 25.8 6.1 34 280-317 92-125 (212)
201 TIGR03128 RuMP_HxlA 3-hexulose 21.2 4.3E+02 0.0094 23.3 7.5 57 275-340 74-132 (206)
202 cd04726 KGPDC_HPS 3-Keto-L-gul 21.2 4E+02 0.0087 23.3 7.2 55 276-340 76-132 (202)
203 TIGR03253 oxalate_frc formyl-C 21.1 99 0.0022 31.3 3.6 33 306-342 64-96 (415)
204 PF04016 DUF364: Domain of unk 21.0 73 0.0016 27.5 2.2 46 269-318 54-99 (147)
205 PRK00451 glycine dehydrogenase 20.8 7E+02 0.015 24.8 9.7 35 277-313 204-238 (447)
206 cd07242 Glo_EDI_BRP_like_6 Thi 20.5 2.8E+02 0.006 21.8 5.5 44 216-259 82-128 (128)
207 KOG2023 Nuclear transport rece 20.1 48 0.001 35.9 1.1 21 296-316 521-541 (885)
208 PRK05398 formyl-coenzyme A tra 20.0 1E+02 0.0023 31.2 3.4 33 306-342 65-97 (416)
No 1
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.4e-34 Score=284.94 Aligned_cols=241 Identities=71% Similarity=1.112 Sum_probs=209.2
Q ss_pred CCCCCcchhhhccCCCCCCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCCh
Q 019265 102 DDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181 (343)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGs 181 (343)
++|++|+|+...+++...+++++|+++|++++|++..+++.|+++++++++++++++.++.+++++++.+..++.++||+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~ 128 (426)
T PLN02813 49 QQDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGS 128 (426)
T ss_pred cCCCCCccccCCCCcccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcH
Confidence 45556667888999999999999999999999999999999999999999999999988887777777777889999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCC
Q 019265 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGT 261 (343)
Q Consensus 182 a~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga 261 (343)
++|+|++|+|||.+|+..++.+|.|+|.||+|.+|+++++.|++.||++..+.+.+.+|++++++++++|+|+++.++|+
T Consensus 129 ~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga 208 (426)
T PLN02813 129 LSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGT 208 (426)
T ss_pred HHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCc
Confidence 99999999999954444555599999999999999999999999999998887666789999999999999999999999
Q ss_pred CCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHH-hcccCcEEEe
Q 019265 262 SSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWY-EYYMVLIVVL 340 (343)
Q Consensus 262 ~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~e-lL~~vDIlf~ 340 (343)
+..++++++..+.+++++++|++||.+..|...+.+.++++.|++.|++|+||+++......+++.+++ +++++||+|+
T Consensus 209 ~~~l~~~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~ 288 (426)
T PLN02813 209 SSTVNYDSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFA 288 (426)
T ss_pred hhhCCccccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEe
Confidence 888887777777789999999999876556456788999999999999999999876544445555544 4589999999
Q ss_pred ec
Q 019265 341 EF 342 (343)
Q Consensus 341 ~~ 342 (343)
|.
T Consensus 289 Ne 290 (426)
T PLN02813 289 NS 290 (426)
T ss_pred CH
Confidence 84
No 2
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.98 E-value=1.7e-31 Score=268.25 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=186.0
Q ss_pred CCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCc--eEEecCChHHHHHHHHHHhC-CC
Q 019265 119 LPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCS--YKAAAGGSLSNSLVALARLG-GK 195 (343)
Q Consensus 119 ~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~--~~~~~GGsa~NvA~aLArLG-~~ 195 (343)
.+++++|+++||++||+.+.++.+||++++|++|.+++++.++...+++.+.... ....+||+++|+|++|++|| .
T Consensus 30 ~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~- 108 (434)
T PRK15074 30 ETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADD- 108 (434)
T ss_pred CCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCC-
Confidence 4689999999999999999999999999999999999999877666666664322 45679999999999999996 8
Q ss_pred CCCCCCCceEEEEEcCCC-hHHHHHHHHHH--hCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhh
Q 019265 196 PIGGPALNVAMTGSVGSD-PLGGFYRAKLR--RANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLV 272 (343)
Q Consensus 196 ~~~~~~~~v~lig~VG~D-~~G~~I~~~L~--~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~ 272 (343)
++.|+|+||+| .+|+++++.|+ +.||++.++...+.+|+.|+++++++|+|+|++++|++..++++++..
T Consensus 109 -------~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~ 181 (434)
T PRK15074 109 -------RSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE 181 (434)
T ss_pred -------CeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH
Confidence 89999999999 79999999997 689999998765568999999999999999999999999999998888
Q ss_pred hccCCceEEEEcCcCCCC---CchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHH-HhcccCcEEEeec
Q 019265 273 NLISKTNIFIVEGYLFEL---PDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 273 ~~i~~adiv~isG~~l~~---p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
..+++++|+|++||.+.. +...+.+.++++.|+++|++|+||++.+..+..+++.+. .+++++||+|+|-
T Consensus 182 ~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~Ne 255 (434)
T PRK15074 182 DVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNE 255 (434)
T ss_pred hHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCH
Confidence 889999999999997642 134678899999999999999999998765544454443 4557999999984
No 3
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=1e-29 Score=250.81 Aligned_cols=213 Identities=21% Similarity=0.295 Sum_probs=188.0
Q ss_pred CCCCCccEEEEc-CceeeeEEecChhHHHhhccccCcceecccccccceeeeccc---------CceEEecCChHHHHHH
Q 019265 118 VLPERWDVLGLG-QAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDG---------CSYKAAAGGSLSNSLV 187 (343)
Q Consensus 118 ~~~~~~~VlviG-~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~---------~~~~~~~GGsa~NvA~ 187 (343)
.-+.+++|++|| +++||+.+.++.+|++++++.+|.+++++.++..++++.+.. ...+.++||+++|+|+
T Consensus 15 ~~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~ 94 (367)
T PLN02379 15 DGPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIR 94 (367)
T ss_pred CCCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHH
Confidence 346788999999 999999999999999999999999999998887776666542 2367889999999999
Q ss_pred HHHH-hCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCC
Q 019265 188 ALAR-LGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTIN 266 (343)
Q Consensus 188 aLAr-LG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~ 266 (343)
+|++ ||. ++.|+|+||+|.+|+++++.|++.||++..++..+.+|+.|+++++++|+|+++++.++...++
T Consensus 95 ~la~~LG~--------~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~ 166 (367)
T PLN02379 95 GLSAGFGV--------STGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQ 166 (367)
T ss_pred HHHHhcCC--------CEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCC
Confidence 9996 999 8999999999999999999999999999888665678999999999999999998888888888
Q ss_pred CchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcc--cCcEEEeec
Q 019265 267 YDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYY--MVLIVVLEF 342 (343)
Q Consensus 267 ~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~--~vDIlf~~~ 342 (343)
++++..+.+++++|+|++ |.+ .+ .+.+.++++.|+++|++|++|++..++.+.+++.++++++ ++||+|+|.
T Consensus 167 ~~~~~~~~~~~~~~v~v~-~~~-~~--~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne 240 (367)
T PLN02379 167 ADELTKEDFKGSKWLVLR-YGF-YN--LEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANE 240 (367)
T ss_pred hhHCCHHHHhcCCEEEEE-ccc-CC--HHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCH
Confidence 888877788999999999 644 23 6788999999999999999999987766777888999985 899999984
No 4
>PTZ00247 adenosine kinase; Provisional
Probab=99.95 E-value=1.3e-27 Score=232.75 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=174.7
Q ss_pred CCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccc---cccceeeecccCceEEecCChHHHHHHHHHHhCCCC
Q 019265 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHE---ERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKP 196 (343)
Q Consensus 120 ~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p---~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~ 196 (343)
+++++|+++|++++|+++.++++|++++.+.+|...+.+.. ..+++ +...+.+.++||+++|+|+++++||..
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~GG~~~N~A~~la~lg~~- 78 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEEL---ESIPNVSYVPGGSALNTARVAQWMLQA- 78 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHH---HhccCceecCCCHHHHHHHHHHHHhcC-
Confidence 56889999999999999999988998888889988887542 22322 223457889999999999999988620
Q ss_pred CCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhh----
Q 019265 197 IGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLV---- 272 (343)
Q Consensus 197 ~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~---- 272 (343)
...+|.|+|.||+|.+|+++++.|++.||++.++...+.+|++++++++ +|+|+++.+++++..++++++..
T Consensus 79 ---g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~~~ 154 (345)
T PTZ00247 79 ---PKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHAVQ 154 (345)
T ss_pred ---CCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHHHH
Confidence 0016999999999999999999999999999887655678999999987 47999999999998888877653
Q ss_pred hccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 273 NLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 273 ~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.+++++++|++||.+..+ .+.+.++++.|+++|+++++|++.+.+....++.+.++++++||+++|.
T Consensus 155 ~~l~~~~~v~~~g~~~~~~--~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~ 222 (345)
T PTZ00247 155 EAIKTAQLYYLEGFFLTVS--PNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNE 222 (345)
T ss_pred HHHhhCCEEEEEEEEeccc--HHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCH
Confidence 3678999999999865444 6889999999999999999998764333334466889999999999984
No 5
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.7e-27 Score=224.46 Aligned_cols=210 Identities=28% Similarity=0.380 Sum_probs=188.9
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
..+.+|++++|+...++..||++|+|+.|+..++++.+.+..-+-+.....+..+||++.|+++++++++.+ +.+
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~-----p~~ 82 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQ-----PGA 82 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccC-----CCc
Confidence 367799999999999999999999999999999998877655444556688999999999999999998763 338
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh----hhhccCCce
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC----LVNLISKTN 279 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di----~~~~i~~ad 279 (343)
+.|+|+||.|++|+.+++.+++.||++.+...++.+||+|.++++.++ |+++.+.|++..++.+++ .|.++.+++
T Consensus 83 ~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~ 161 (343)
T KOG2854|consen 83 TVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAK 161 (343)
T ss_pred eEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhhee
Confidence 999999999999999999999999999998888899999999999765 999999999999998876 456899999
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
++|++||++.. +++.+..+.++|.+.+.+..++++.+++.+.+.+.+.++++|+||+|.|
T Consensus 162 v~yv~Gffltv--~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgN 221 (343)
T KOG2854|consen 162 VFYVAGFFLTV--SPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGN 221 (343)
T ss_pred EEEEEEEEEEe--ChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcC
Confidence 99999998865 3789999999999999999999999888888899999999999999988
No 6
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.95 E-value=1.9e-26 Score=220.75 Aligned_cols=208 Identities=38% Similarity=0.544 Sum_probs=169.3
Q ss_pred CccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCC
Q 019265 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (343)
Q Consensus 122 ~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~ 201 (343)
+.+|+++|++++|+++.+++......++++|...+.+...-... +...+....+||+++|+|++|++||.
T Consensus 1 ~~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~GG~~~N~A~~la~LG~------- 70 (312)
T cd01168 1 RYDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEEL---LAKLPVKYIAGGSAANTIRGAAALGG------- 70 (312)
T ss_pred CceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHH---HHhcCccccCCCHHHHHHHHHHHhcC-------
Confidence 35699999999999999988444555556666555421111000 00124578899999999999999999
Q ss_pred CceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEE
Q 019265 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 202 ~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv 281 (343)
++.++|.||+|.+|+.+++.|+++||++.++...+.+|+.++++++++|+|+++.+++++..++++++....+++++++
T Consensus 71 -~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v 149 (312)
T cd01168 71 -SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYL 149 (312)
T ss_pred -CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEE
Confidence 8999999999999999999999999999988765678999999999899999999999988898888877778999999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
|++++.+..+ .+.+..+++.+++.|++++||++.+...+..++.++++++++|++++|.
T Consensus 150 ~~~~~~~~~~--~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~ 208 (312)
T cd01168 150 YLEGYLLTVP--PEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNE 208 (312)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCH
Confidence 9999865444 4888999999999999999999764333445567889999999999984
No 7
>PLN02967 kinase
Probab=99.93 E-value=1.5e-24 Score=223.83 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=156.6
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceee--ecccCceEEecCChHHHHHHHHHHhCCCCCCCCC
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLR--AMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~--~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~ 201 (343)
.|+|||.+++|++...... ..++. .+.+.-+. ...+..+..++||+++|+|++|+|||.
T Consensus 198 ~V~~iGe~l~D~~p~g~~~-----------~~l~~-~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~------- 258 (581)
T PLN02967 198 LVCCFGAAQHAFVPSGRPA-----------NRLLD-YEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGG------- 258 (581)
T ss_pred eEEEECchhheecccCccc-----------hhhhh-ccccccccccccCccceeeecCcHHHHHHHHHHHCCC-------
Confidence 4999999999997643210 00000 00000000 112456788999999999999999999
Q ss_pred CceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEE-ecCCCCCCCCchhhhhccCCce
Q 019265 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLA-YQGTSSTINYDPCLVNLISKTN 279 (343)
Q Consensus 202 ~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~-~~Ga~~~l~~~di~~~~i~~ad 279 (343)
++.|+|+||+|.+|+++++.|++.||+++++... +.+|++++|+++++|+|.+++ +++++..+.++++....+.+++
T Consensus 259 -~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~~~l~~A~ 337 (581)
T PLN02967 259 -KVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINIDVLKEAK 337 (581)
T ss_pred -CEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCHhHhcCCC
Confidence 8999999999999999999999999999998864 568999999999999988754 5788888888888777889999
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--hh--hhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--CI--ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--~~--~~~~e~l~elL~~vDIlf~~~ 342 (343)
+||++++.+..+.....+..+++.|++.|++|+||++.+. |. +..++.+.++++++|||++|-
T Consensus 338 i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~Ne 404 (581)
T PLN02967 338 MFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTK 404 (581)
T ss_pred EEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECH
Confidence 9999998653344568899999999999999999999642 21 224567889999999999984
No 8
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.92 E-value=2.5e-24 Score=219.43 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=154.3
Q ss_pred CCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (343)
Q Consensus 121 ~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~ 200 (343)
-...|+|+|++++|++...... +. ++.+. + ..++- +.++....+..++||+++|+|++|+|||.
T Consensus 124 ~~~~v~~~Ge~liDf~~~~~~~-~~--~~~~~---~--~~~~~--~~~~~~~~f~~~~GGa~aNVAvaLARLG~------ 187 (496)
T PLN02543 124 DPPLVCCFGAVQKEFVPTVRVH-DN--QMHPD---M--YSQWK--MLQWDPPEFARAPGGPPSNVAISHVRLGG------ 187 (496)
T ss_pred CCCeEEEeChhhhhhcCCCccc-cc--ccccc---c--ccccc--cccccCCeeEeccCcHHHHHHHHHHHCCC------
Confidence 4445999999999999864210 00 00000 0 00010 11123456889999999999999999999
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEEC--CCCCeEEEE-e-cCCCCCCCCchhhhhcc
Q 019265 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTT--PDAQRAMLA-Y-QGTSSTINYDPCLVNLI 275 (343)
Q Consensus 201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid--~dGeRt~i~-~-~Ga~~~l~~~di~~~~i 275 (343)
++.|+|+||+|.+|+++++.|++.||+++++.+. +.+|++++|.++ ++| |.+++ + .+++..+.+++++...+
T Consensus 188 --~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l 264 (496)
T PLN02543 188 --RAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVL 264 (496)
T ss_pred --CEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHh
Confidence 8999999999999999999999999999999865 568999999884 445 55543 3 46667788888887888
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--hh--hhcHHHHHHhcccCcEEEeec
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--CI--ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--~~--~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++||++++.+..+...+.+.++++.|++.|++|+||++.+. |. +...+.+.++++++||+++|-
T Consensus 265 ~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~Se 335 (496)
T PLN02543 265 KEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSR 335 (496)
T ss_pred CCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecH
Confidence 99999999998764444568899999999999999999999642 21 234566888999999999984
No 9
>PLN02548 adenosine kinase
Probab=99.92 E-value=1.8e-24 Score=209.21 Aligned_cols=204 Identities=19% Similarity=0.249 Sum_probs=165.8
Q ss_pred EcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHH---HHhCCCCCCCCCCce
Q 019265 128 LGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVAL---ARLGGKPIGGPALNV 204 (343)
Q Consensus 128 iG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aL---ArLG~~~~~~~~~~v 204 (343)
+|++++|+++.++++|+++++|++|.+++.+.++..+.-+.+...+....+||++.|+|.++ +++|. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~--------~~ 72 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPG--------AT 72 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCC--------cE
Confidence 59999999999999999999999999997765543222223445678899999999986544 55688 89
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh----hhhccCCceE
Q 019265 205 AMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC----LVNLISKTNI 280 (343)
Q Consensus 205 ~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di----~~~~i~~adi 280 (343)
.|+|.||+|.+|+++++.|++.||+++++...+.+|++++++++ +|+|+++.+.++...++.+++ ..+.+..+++
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999987655678999999886 799999888887766665443 2345678999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|++|+.+..+ .+.+..+++.|+++|+++.+|++.+.+.+...+.++++++++||+++|.
T Consensus 152 v~~~g~~~~~~--~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~ 211 (332)
T PLN02548 152 YYIAGFFLTVS--PESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNE 211 (332)
T ss_pred EEEEEEEccCC--HHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecH
Confidence 99999865443 5778889999999999999999865444445667899999999999984
No 10
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.91 E-value=3.9e-23 Score=195.43 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=148.9
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|++++|++..++. ++ .++.. .....+...+|| +.|+|++|++||. +
T Consensus 1 ~i~~iG~~~~D~i~~~~~-~~----------------~~~~~---~~~~~~~~~~GG-~~Nva~~l~~lG~--------~ 51 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDK-LP----------------ASGGD---IEAKSKSYVIGG-GFNVMVAASRLGI--------P 51 (289)
T ss_pred CeEEEcceeEEEEeeccc-CC----------------CCCCc---cccceeeeccCc-HHHHHHHHHHcCC--------C
Confidence 489999999999998864 22 22211 223457889999 9999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIV 283 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~i 283 (343)
+.++|.+|+|.+|+++++.|++.||+++++.+.+.+|+.++++++++|+|+++.+++++..++++++....+.+++++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999999877667888888888889999999999988777766655445789999999
Q ss_pred cCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 284 EGYLFELPD-TIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 284 sG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|+.+..+. ..+.+.++++.++ .+++++||++++... ...+.++++++++|++++|-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~-~~~~~~~~~l~~~d~~~~n~ 189 (289)
T cd01944 132 SGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRISD-IPDTILQALMAKRPIWSCNR 189 (289)
T ss_pred eCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccc-cCHHHHHHHHhcCCEEccCH
Confidence 998653222 3456666666644 579999999864211 12466888999999999874
No 11
>PRK11142 ribokinase; Provisional
Probab=99.91 E-value=4e-23 Score=196.65 Aligned_cols=181 Identities=21% Similarity=0.329 Sum_probs=149.1
Q ss_pred ccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 123 ~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
.+|+++|++++|+++.+++ + |.+++. +...+...++||++.|+|++|++||.
T Consensus 3 ~~i~~iG~~~~D~~~~~~~-~----------------p~~~~~---~~~~~~~~~~GG~~~Nva~~la~lG~-------- 54 (306)
T PRK11142 3 GKLVVLGSINADHVLNLES-F----------------PRPGET---LTGRHYQVAFGGKGANQAVAAARLGA-------- 54 (306)
T ss_pred CcEEEECCceeeEEEEeCC-C----------------CCCCCe---eEeccceecCCCcHHHHHHHHHhcCC--------
Confidence 3699999999999998875 2 223322 22356778999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh--hhccCCce
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL--VNLISKTN 279 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~--~~~i~~ad 279 (343)
++.++|.+|+|.+|+.+++.|++.||+++++.. ++.+|++++++++++|+|+++++++++..++++++. .+.+++++
T Consensus 55 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (306)
T PRK11142 55 DIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANAD 134 (306)
T ss_pred cEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCC
Confidence 899999999999999999999999999999875 456899999999989999999999988788876654 35678999
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++|+++. .+ .+.+.++++.|++.|++++||++... +...++++++||+++|.
T Consensus 135 ~v~~~~~---~~--~~~~~~~~~~a~~~g~~v~~d~~~~~------~~~~~~~~~~dil~~n~ 186 (306)
T PRK11142 135 ALLMQLE---TP--LETVLAAAKIAKQHGTKVILNPAPAR------ELPDELLALVDIITPNE 186 (306)
T ss_pred EEEEeCC---CC--HHHHHHHHHHHHHcCCEEEEECCCCc------ccCHHHHhhCCEEcCCH
Confidence 9999853 22 57788999999999999999997531 12246788999999884
No 12
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.90 E-value=7.8e-23 Score=192.93 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=147.6
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|.+++|++..+++ + |..++. +.......++||++.|+|++|++||. +
T Consensus 1 ~il~iG~~~~D~~~~~~~-~----------------~~~~~~---~~~~~~~~~~GG~~~NvA~~l~~lG~--------~ 52 (292)
T cd01174 1 KVVVVGSINVDLVTRVDR-L----------------PKPGET---VLGSSFETGPGGKGANQAVAAARLGA--------R 52 (292)
T ss_pred CEEEEeeceeEEEEEecC-C----------------CCCCCc---EEeccceecCCCcHHHHHHHHHHcCC--------c
Confidence 589999999999998764 1 222221 22345678999999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh--hhccCCceE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL--VNLISKTNI 280 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~--~~~i~~adi 280 (343)
+.++|.+|+|.+|+.+++.|++.||+++++.+ .+.+|++++++++.+|+|+++.+++++..++++++. .+.++.+++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 99999999999999999999999999999864 457899999999888999999999888777765543 256889999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|+++. .+ .+.+..+++.++++|++++||++... +.+.++++++||+++|.
T Consensus 133 v~~~~~---~~--~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~~~dil~~n~ 183 (292)
T cd01174 133 LLLQLE---IP--LETVLAALRAARRAGVTVILNPAPAR------PLPAELLALVDILVPNE 183 (292)
T ss_pred EEEeCC---CC--HHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHHHHhhCCEEeeCH
Confidence 999853 22 57888999999999999999997531 12367889999999883
No 13
>PLN02323 probable fructokinase
Probab=99.90 E-value=6e-23 Score=198.43 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=154.3
Q ss_pred CCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCC
Q 019265 120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGG 199 (343)
Q Consensus 120 ~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~ 199 (343)
.++++|+++|++++|+++.++. + |. .....+..++||++.|+|++|++||.
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~~-~----------------~~-------~~~~~~~~~~GG~~~NvA~~la~LG~----- 58 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVSG-V----------------SL-------AEAPAFKKAPGGAPANVAVGISRLGG----- 58 (330)
T ss_pred CCCCcEEEechhhhhhccCCCC-C----------------Cc-------ccccceeecCCChHHHHHHHHHhcCC-----
Confidence 4667799999999999876643 1 10 01235678999999999999999999
Q ss_pred CCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEec--CCCCCCCCchhhhhccC
Q 019265 200 PALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQ--GTSSTINYDPCLVNLIS 276 (343)
Q Consensus 200 ~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~--Ga~~~l~~~di~~~~i~ 276 (343)
++.++|.||+|.+|+++++.|++.||+++++.+. +.+|++++++++++|+|++++++ +++..+++++++.+.++
T Consensus 59 ---~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (330)
T PLN02323 59 ---SSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIR 135 (330)
T ss_pred ---ceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHc
Confidence 8999999999999999999999999999998864 46899999999889999999885 55556777777777788
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--h--hhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--C--IERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--~--~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++|++++.+..+.....+..+++.+++.|++|+||++.+. + .+..++.+.++++++||+++|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~ 205 (330)
T PLN02323 136 KAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSD 205 (330)
T ss_pred cCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCH
Confidence 9999999887643222345677899999999999999998642 1 1234567888999999999984
No 14
>PTZ00292 ribokinase; Provisional
Probab=99.90 E-value=1.1e-22 Score=196.02 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=152.0
Q ss_pred CccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCC
Q 019265 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (343)
Q Consensus 122 ~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~ 201 (343)
.++|+|+|.+++|+++.+++ + |.+++. +....+...+||++.|+|++|++||.
T Consensus 15 ~~~vlviG~~~vD~~~~~~~-~----------------~~~~~~---~~~~~~~~~~GG~~~NvA~~la~lG~------- 67 (326)
T PTZ00292 15 EPDVVVVGSSNTDLIGYVDR-M----------------PQVGET---LHGTSFHKGFGGKGANQAVMASKLGA------- 67 (326)
T ss_pred CCCEEEEccceeeEEEecCC-C----------------CCCCCc---eeecCceeCCCCcHHHHHHHHHHcCC-------
Confidence 56799999999999999875 1 222221 22346678999999999999999999
Q ss_pred CceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEEC-CCCCeEEEEecCCCCCCCCchhhh--hccCC
Q 019265 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTT-PDAQRAMLAYQGTSSTINYDPCLV--NLISK 277 (343)
Q Consensus 202 ~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid-~dGeRt~i~~~Ga~~~l~~~di~~--~~i~~ 277 (343)
++.++|.||+|.+|+.+++.|++.||+++++.+ .+.+|++++++++ ++|+|+++++++++..++++++.. ..+..
T Consensus 68 -~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 146 (326)
T PTZ00292 68 -KVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQN 146 (326)
T ss_pred -CeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhh
Confidence 899999999999999999999999999999964 4678999999998 789999999999888888766542 44667
Q ss_pred -ceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 278 -TNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 278 -adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++++++. .+ .+.+.++++.|++.|++++||+++.... ...+.+.++++++||+++|.
T Consensus 147 ~~~~~~~~~~---~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~l~~~dii~~n~ 206 (326)
T PTZ00292 147 ICKYLICQNE---IP--LETTLDALKEAKERGCYTVFNPAPAPKL-AEVEIIKPFLKYVSLFCVNE 206 (326)
T ss_pred hCCEEEECCC---CC--HHHHHHHHHHHHHcCCEEEEECCCCccc-cccccHHHHHhcCCEEcCCH
Confidence 899999753 22 5777889999999999999999864211 12256888999999999984
No 15
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.90 E-value=1.4e-22 Score=189.94 Aligned_cols=181 Identities=19% Similarity=0.198 Sum_probs=148.6
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|.+++|+++.+++ + |..++. ....+...++||++.|+|++|++||. +
T Consensus 1 ~v~~iG~~~~D~~~~v~~-~----------------p~~~~~---~~~~~~~~~~GG~~~Nva~~l~~lg~--------~ 52 (279)
T cd01942 1 DVAVVGHLNYDIILKVES-F----------------PGPFES---VLVKDLRREFGGSAGNTAVALAKLGL--------S 52 (279)
T ss_pred CEEEEecceeeeEeeccc-C----------------CCCCce---EecceeeecCCcHHHHHHHHHHHcCC--------C
Confidence 689999999999998876 2 222211 22356789999999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI 282 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~ 282 (343)
+.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.++++++++|+|+++.++++...+++++ ....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 99999999999999999999999999999964 4578999999999889999888888877777665 556778999999
Q ss_pred EcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 283 VEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 283 isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++. .+.++++.+++.|+++++|++... .....+.+.++++++|++++|.
T Consensus 132 ~~~~~--------~~~~~~~~~~~~g~~v~~D~~~~~-~~~~~~~~~~~l~~~dil~~n~ 182 (279)
T cd01942 132 LSSGP--------GLIELARELAAGGITVSFDPGQEL-PRLSGEELEEILERADILFVND 182 (279)
T ss_pred eCCch--------HHHHHHHHHHHcCCeEEEcchhhh-hhccHHHHHHHHhhCCEEecCH
Confidence 99752 456778888888999999998632 1113466888999999999984
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.7e-22 Score=193.26 Aligned_cols=189 Identities=27% Similarity=0.391 Sum_probs=157.5
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|++++|++.+..+.++ ..++. ......++.+||++.|+|++++|||. +
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~----------------~~~~~---~~~~~~~~~~GG~~~N~A~~~a~lG~--------~ 53 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLP----------------EPGET---VLGDFFKVAGGGKGANVAVALARLGA--------K 53 (311)
T ss_pred CEEEECchhhheehhhccCCC----------------CCccc---ccccceeecCCchHHHHHHHHHHcCC--------c
Confidence 489999999999997443122 12211 12234678899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCC-CCceEEEEEECCCCCeEEEEecC-CCCCCCCchhhhhccCCceEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD-GTTGTVIVLTTPDAQRAMLAYQG-TSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~-~~Tg~~iVlid~dGeRt~i~~~G-a~~~l~~~di~~~~i~~adiv 281 (343)
+.|+|.||+|.+|+.+++.|++.||+++++.... .+|+.++++++++|+|+|+++++ +...+.++++.+..+..++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 9999999999999999999999999999988654 58999999999899999999998 466677777776778899999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
|++++.+..+ ++.+..+++.|++.|.++++|++....... .+.++++++++||+++|.
T Consensus 134 ~~~~~~l~~~--~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~~~d~~~~n~ 191 (311)
T COG0524 134 HISGIQLEIP--PEALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLALADILFPNE 191 (311)
T ss_pred eEEEeecCCC--hHHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHhhCCEEeCCH
Confidence 9999987655 388999999999999999999997643222 578899999999999984
No 17
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.89 E-value=2.3e-22 Score=189.67 Aligned_cols=186 Identities=25% Similarity=0.308 Sum_probs=148.8
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+|+|++++|+++..+. . .+...+....+||++.|+|++|++||. +
T Consensus 1 ~i~~iG~~~iD~~~~~~~-----------~--------------~~~~~~~~~~~GG~~~N~a~~la~lg~--------~ 47 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-----------R--------------LEQADSFRKFFGGAEANVAVGLARLGH--------R 47 (294)
T ss_pred CeEEechhheeeecCCCC-----------c--------------cchhhccccccCChHHHHHHHHHhcCC--------c
Confidence 589999999999876532 0 012345667899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecC--CCCCCCCchhhhhccCCceE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQG--TSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~G--a~~~l~~~di~~~~i~~adi 280 (343)
+.++|.+|+|.+|+.+++.|++.||+++++.+ .+.+|+.++++++++|+|+++.+++ +...++.+++....++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 99999999999999999999999999999865 4578999999998789999988864 44556666655567789999
Q ss_pred EEEcCcCCCC-CchHHHHHHHHHHHHhCCCEEEEECCCcch---hhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFEL-PDTIRTITKACEVAHRSGALVAVTASDVTC---IERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~-p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~---~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|++++.... +.+.+.+.++++++++.++++++|++.... .+...+.+.++++++||+++|.
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~ 193 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSE 193 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCH
Confidence 9999986432 212378889999999999999999986421 1223456788999999999984
No 18
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.89 E-value=8.5e-22 Score=186.76 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=142.4
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
.|+|+|++++|+++.+++ + |..++. ....+...++||++.|+|++|++||. +
T Consensus 1 ~v~~iG~~~vD~~~~v~~-~----------------p~~~~~---~~~~~~~~~~GG~a~NvA~~la~lG~--------~ 52 (290)
T cd01939 1 AVLCVGLTVLDFITTVDK-Y----------------PFEDSD---QRTTNGRWQRGGNASNSCTVLRLLGL--------S 52 (290)
T ss_pred CEEEEeeeeeEEEeeecC-C----------------CCCCcc---eEeeeeeEecCCCHHHHHHHHHHcCC--------c
Confidence 489999999999999876 1 222221 11234567899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI 282 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~ 282 (343)
+.++|.||+|++|+++++.|++.||++.++... +.+|..++++++++|+|++++++++...++.+++....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 999999999999999999999999999997644 3456667788877899999998888777877776655568999999
Q ss_pred EcCcCCCCCchHHHHHHHHHHHHhCC-------CEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 283 VEGYLFELPDTIRTITKACEVAHRSG-------ALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 283 isG~~l~~p~s~~~i~~ll~~Ak~~G-------~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++. ++...++++.+++.+ +++++|+... .+.+.++++++||+++|.
T Consensus 133 ~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~l~~~di~~~n~ 187 (290)
T cd01939 133 FEGRN------PDETLRMMQHIEEHNNRRPEIRITISVEVEKP------REELLELAAYCDVVFVSK 187 (290)
T ss_pred EeccC------HHHHHHHHHHHHHhcCcCCCcceEEEEEeccC------chhhhhHHhhCCEEEEEh
Confidence 99864 244567777777766 6888998642 234568999999999985
No 19
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.88 E-value=1.4e-21 Score=184.71 Aligned_cols=183 Identities=25% Similarity=0.333 Sum_probs=147.0
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|++++|++...+. . .......+||++.|+|.++++||. +
T Consensus 1 ~ilviG~~~~D~~~~~~~--------------------~--------~~~~~~~~GG~~~n~a~~l~~lg~--------~ 44 (295)
T cd01167 1 KVVCFGEALIDFIPEGSG--------------------A--------PETFTKAPGGAPANVAVALARLGG--------K 44 (295)
T ss_pred CEEEEcceeEEEecCCCC--------------------C--------CccccccCCCcHHHHHHHHHhcCC--------C
Confidence 589999999999976543 0 124567899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCch-hhhhccCCceEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDP-CLVNLISKTNIF 281 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~d-i~~~~i~~adiv 281 (343)
|.++|.+|+|.+|+.+++.|++.||++.++.+ .+.+|++++++++++|+|++..++++......+. +..+.+++++++
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 99999999999999999999999999999874 5678999999998889999999887654433322 445567899999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--hh--hhcHHHHHHhcccCcEEEeec
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--CI--ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--~~--~~~~e~l~elL~~vDIlf~~~ 342 (343)
|++++.+..+...+.+.++++.+++.|+++++|++... +. ....+.+.++++++|++++|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~ 189 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSD 189 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecH
Confidence 99877432222346788899999999999999998532 11 123456788999999999984
No 20
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.88 E-value=1.7e-21 Score=198.12 Aligned_cols=204 Identities=20% Similarity=0.174 Sum_probs=146.1
Q ss_pred CCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCC
Q 019265 119 LPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIG 198 (343)
Q Consensus 119 ~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~ 198 (343)
..++++|+++|++++|+++.+++ +| ..+..... ....++ ...........+|| ++|+|++|++||.
T Consensus 69 ~~~~~~vl~lG~~~vD~i~~V~~-lP------~~~~~~~~-~~~~~~-~~~~~~~~~~~~GG-~~NvAvaLarLG~---- 134 (470)
T PLN02341 69 AGKEIDVATLGNLCVDIVLPVPE-LP------PPSREERK-AYMEEL-AASPPDKKSWEAGG-NCNFAIAAARLGL---- 134 (470)
T ss_pred ccccccEEEECCcceeEEEecCC-CC------CCCHHHHH-HHHHhh-cccccccceecCCh-HHHHHHHHHHcCC----
Confidence 34667899999999999999876 22 11100000 000000 00011233455677 6899999999999
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCC---------CCceEEEEEECCCCCeEEEEecCCCCCCCC--
Q 019265 199 GPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKD---------GTTGTVIVLTTPDAQRAMLAYQGTSSTINY-- 267 (343)
Q Consensus 199 ~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~---------~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~-- 267 (343)
++.++|.||+|.+|+++++.|++.||++.++...+ .+|+.|+++++++|+|+++...+.......
T Consensus 135 ----~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~ 210 (470)
T PLN02341 135 ----RCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSW 210 (470)
T ss_pred ----CeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhh
Confidence 89999999999999999999999999999986432 469999999999999887654432222111
Q ss_pred ----chhhhhccCCceEEEEcCcCC-CCCchHHHHHHHHHHHHhCCCEEEEECCCcc---hh--hhcHHHHHHhcccCcE
Q 019265 268 ----DPCLVNLISKTNIFIVEGYLF-ELPDTIRTITKACEVAHRSGALVAVTASDVT---CI--ERHYDDFWYEYYMVLI 337 (343)
Q Consensus 268 ----~di~~~~i~~adiv~isG~~l-~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~---~~--~~~~e~l~elL~~vDI 337 (343)
.+...+.++++++||++||.+ ..+ .+.+.++++.|++.|++|+||+++.. +. +..++.+.++++++||
T Consensus 211 ~~~l~~~~~~~l~~adiv~lsg~~~~~~~--~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Di 288 (470)
T PLN02341 211 ISKLSAEAKMAIRQSKALFCNGYVFDELS--PSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDV 288 (470)
T ss_pred hhcccHHHHhhhhcCCEEEEeceeCCcCC--HHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCE
Confidence 122335678999999999864 223 67889999999999999999998641 11 1134568899999999
Q ss_pred EEeec
Q 019265 338 VVLEF 342 (343)
Q Consensus 338 lf~~~ 342 (343)
+++|-
T Consensus 289 l~~Ne 293 (470)
T PLN02341 289 LLLTS 293 (470)
T ss_pred EEecH
Confidence 99984
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.87 E-value=8.3e-21 Score=178.66 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=144.1
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|.+++|++..++. + |..++. +....+..++||++.|+|++|++||. +
T Consensus 1 ~i~~iG~~~iD~~~~~~~-~----------------p~~~~~---~~~~~~~~~~GG~~~NvA~~l~~lG~--------~ 52 (284)
T cd01945 1 RVLGVGLAVLDLIYLVAS-F----------------PGGDGK---IVATDYAVIGGGNAANAAVAVARLGG--------Q 52 (284)
T ss_pred CEEEECcceeEEEEEecc-C----------------CCCCCe---EEEeEEEEecCCHHHHHHHHHHHcCC--------C
Confidence 589999999999999865 2 222222 22346788999999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI 282 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~ 282 (343)
+.++|.+|+|.+|+.+++.|++.||++.++... +.+|+++++ ...+|+|.+..+.+....+..+++....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 999999999999999999999999999999865 457888776 445778888888777767777777666689999999
Q ss_pred EcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 283 VEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 283 isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++. ++...++++.+++.|+++.+|+.+... .+ +.++++++||+++|-
T Consensus 132 i~~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~-~~~~~~~~dil~~n~ 180 (284)
T cd01945 132 VDGRQ------PEAALHLAQEARARGIPIPLDLDGGGL----RV-LEELLPLADHAICSE 180 (284)
T ss_pred EcCCC------HHHHHHHHHHHHHcCCCeeEeccCCcc----cc-hHHHhccCCEEEeCh
Confidence 99763 467788999999999977777654321 22 678899999999984
No 22
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.86 E-value=9.8e-21 Score=180.47 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=142.2
Q ss_pred ccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 123 ~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
.+|+++|++++|++.... ......+||++.|+|++|++||.
T Consensus 3 ~~il~iG~~~iD~~~~~~-------------------------------~~~~~~~GG~~~N~a~~l~~LG~-------- 43 (304)
T PRK09434 3 NKVWVLGDAVVDLIPEGE-------------------------------NRYLKCPGGAPANVAVGIARLGG-------- 43 (304)
T ss_pred CcEEEecchheeeecCCC-------------------------------CceeeCCCChHHHHHHHHHHcCC--------
Confidence 489999999999983210 12456899999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEec--CCCCCCCCchhhhhccCCce
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQ--GTSSTINYDPCLVNLISKTN 279 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~--Ga~~~l~~~di~~~~i~~ad 279 (343)
++.++|.||+|.+|+++++.|++.||++.++.. ++.+|+.+++.++++|+|++..+. ++...+...++. .+.+++
T Consensus 44 ~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~ 121 (304)
T PRK09434 44 ESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGE 121 (304)
T ss_pred CceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCC
Confidence 899999999999999999999999999998875 457899999999888999876543 444444444443 357899
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--hh--hhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--CI--ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--~~--~~~~e~l~elL~~vDIlf~~~ 342 (343)
++|++++.+..+.......++++.++++|++++||++.+. |. +..++.+.++++++||+++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~ 188 (304)
T PRK09434 122 WLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSE 188 (304)
T ss_pred EEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCH
Confidence 9999988654443456778899999999999999998642 11 234567788899999999984
No 23
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.86 E-value=9.2e-21 Score=176.78 Aligned_cols=167 Identities=23% Similarity=0.218 Sum_probs=135.4
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|++++|++... ...++||++.|+|++|++||. +
T Consensus 1 ~v~~iG~~~~D~~~~~----------------------------------~~~~~GG~~~Nva~~la~lG~--------~ 38 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------------------------------GKMYPGGNALNVAVYAKRLGH--------E 38 (264)
T ss_pred CeEEEcceEEEEeccC----------------------------------ceecCCCcHHHHHHHHHHcCC--------C
Confidence 5899999999998521 236799999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEec-CCCCCCCCchhhhhccCCceEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQ-GTSSTINYDPCLVNLISKTNIFI 282 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~-Ga~~~l~~~di~~~~i~~adiv~ 282 (343)
+.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++. ++|+|+++.+. ++.....+.+.....+++++++|
T Consensus 39 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (264)
T cd01940 39 SAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVEL-VDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVH 117 (264)
T ss_pred eeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEe-cCCceEEEeecCCcHHhcccCcccHhHHhcCCEEE
Confidence 99999999999999999999999999999887556799887554 68899988765 54433333333345578999999
Q ss_pred EcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 283 VEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 283 isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++.. .+.+.++++.|++.|++|+||++... ..+.+.++++++|++++|.
T Consensus 118 ~~~~~~-----~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~ 168 (264)
T cd01940 118 TGIYSH-----EGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVCPYVDFAFFSA 168 (264)
T ss_pred Eccccc-----HHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhcccCCEEEech
Confidence 997642 46788999999999999999998752 1234678899999999873
No 24
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.85 E-value=3.4e-20 Score=173.25 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=135.7
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|.+++|+++.+++ .|.+++. .....+...+||++.|+|++|++||. +
T Consensus 1 ~il~iG~~~iD~~~~~~~-----------------~~~~~~~---~~~~~~~~~~GG~~~Nva~~l~~lG~--------~ 52 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDA-----------------PPQPGGI---SHSSDSRESPGGGGANVAVQLAKLGN--------D 52 (265)
T ss_pred CEEEEeeeeEEEEEEecC-----------------CCCCCce---eecccceeecCchHHHHHHHHHHcCC--------c
Confidence 589999999999999865 1222221 22346789999999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIV 283 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~i 283 (343)
+.++|.||+|.+|+.+++.|++ ++++..+...+.+|+.++++++++|+|+++.+.+.. ++++.++.+++++++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 999988876667899999999989999988765432 23344456789999999
Q ss_pred cCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 284 EGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 284 sG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++. + ..++++.|++.+ .+++|++... ..+.+.++++++|++|+|.
T Consensus 128 ~~~~---~-----~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~~~~~d~~~~n~ 173 (265)
T cd01947 128 TAAA---V-----DKEAIRKCRETK-LVILQVTPRV----RVDELNQALIPLDILIGSR 173 (265)
T ss_pred eccc---c-----cHHHHHHHHHhC-CeEeccCccc----cchhHHHHhhhCCEEEeCH
Confidence 9763 1 245667777765 5778887542 1245688899999999984
No 25
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.84 E-value=7.7e-20 Score=173.03 Aligned_cols=176 Identities=23% Similarity=0.333 Sum_probs=143.7
Q ss_pred cCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEE
Q 019265 129 GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTG 208 (343)
Q Consensus 129 G~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig 208 (343)
|.+++|+++.+++ + |..++. +.......++||++.|+|++|++||. ++.+++
T Consensus 1 G~~~~D~~~~~~~-~----------------p~~~~~---~~~~~~~~~~GG~~~Nva~~l~~lg~--------~~~~~~ 52 (293)
T TIGR02152 1 GSINMDLVLRTDR-L----------------PKPGET---VHGHSFQIGPGGKGANQAVAAARLGA--------EVSMIG 52 (293)
T ss_pred CCceEeEEEEeCC-C----------------CCCCCc---EecCCceecCCCcHHHHHHHHHHCCC--------CEEEEE
Confidence 7899999999875 1 223322 22456789999999999999999999 899999
Q ss_pred EcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh--hhccCCceEEEEcC
Q 019265 209 SVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL--VNLISKTNIFIVEG 285 (343)
Q Consensus 209 ~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~--~~~i~~adiv~isG 285 (343)
.+|+|.+|+.+++.|++.||++.+++.. +.+|++++++++++|+|+++.+++++..++++++. .+.+..++++++++
T Consensus 53 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T TIGR02152 53 KVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQL 132 (293)
T ss_pred EecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEec
Confidence 9999999999999999999999998864 46899999999888999999999887777776654 34678999999974
Q ss_pred cCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 286 YLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 286 ~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
. .+ .+.+.++++.++++++++++|++... + ....++++++||+++|.
T Consensus 133 ~---~~--~~~~~~~~~~~~~~~~~v~~D~~~~~--~---~~~~~~~~~~d~l~~n~ 179 (293)
T TIGR02152 133 E---IP--LETVLEAAKIAKKHGVKVILNPAPAI--K---DLDDELLSLVDIITPNE 179 (293)
T ss_pred C---CC--HHHHHHHHHHHHHcCCEEEEECCcCc--c---cchHHHHhcCCEEccCH
Confidence 2 22 67888999999999999999997531 1 11257788999999874
No 26
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.84 E-value=1.5e-20 Score=177.41 Aligned_cols=186 Identities=26% Similarity=0.320 Sum_probs=148.0
Q ss_pred ccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 123 ~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
.+|+++|.+++|++..++.. ++. . ........++||++.|+|++|++||.
T Consensus 2 ~~v~~iG~~~iD~~~~~~~~--------~~~-----------~---~~~~~~~~~~GG~~~n~a~~l~~LG~-------- 51 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDRF--------KGD-----------L---VRVSSVKRSPGGAGANVAIALARLGA-------- 51 (301)
T ss_dssp EEEEEESEEEEEEEEESSSH--------TTS-----------E---EEESEEEEEEESHHHHHHHHHHHTTS--------
T ss_pred CcEEEECccceEEEeecCCc--------CCc-----------c---eecceEEEecCcHHHHHHHHHHhccC--------
Confidence 47999999999999998751 111 1 12356789999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv 281 (343)
++.+++.+|+|.+|+.+++.|++.||+++++.+ .+.+|++++++++++|+|+++.++++...++.+++.+..+.+++++
T Consensus 52 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (301)
T PF00294_consen 52 DVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADIL 131 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEE
T ss_pred cceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccce
Confidence 999999999999999999999999999999985 4568999999999889999999999888887776777788899999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCC--EEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGA--LVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~--~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
|+++..+..+.....+..+.+.+++.+. +++.++.+. . .++.+.++++++||+++|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~dil~~n~ 190 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD---D-LREDLKELLPYADILKPNE 190 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH---H-HHHHHHHHHHTSSEEEEEH
T ss_pred eecccccccccccceeeeccccccccccccccccccccc---c-cchhhhhhccccchhcccc
Confidence 9999222222224666666677777662 343333321 1 4678899999999999984
No 27
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.84 E-value=6e-20 Score=171.69 Aligned_cols=164 Identities=21% Similarity=0.168 Sum_probs=133.1
Q ss_pred ccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 123 ~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
++|+++|++++|++.+.. +.++||++.|+|++|++||.
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------------------------------~~~~GG~~~NvA~~l~~lG~-------- 38 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------------------------------KAFSGGNAVNVAVYCTRYGI-------- 38 (260)
T ss_pred CeEEEeccceeeecccCC----------------------------------ccccCccHHHHHHHHHHcCC--------
Confidence 579999999999986431 15799999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEec-CCCCCCCCchhhhhccCCceEE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQ-GTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~-Ga~~~l~~~di~~~~i~~adiv 281 (343)
++.++|.||+|.+|+++++.|++.||+++++.+.+.+|+.+++.++ +++|++..+. +++..+.+++...+.+.+++++
T Consensus 39 ~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 117 (260)
T PRK09813 39 QPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIV 117 (260)
T ss_pred cceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEE
Confidence 8999999999999999999999999999999876567898888885 6899988765 6555555555444567899999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
|++.+. ...++++.++++|++++||++... ..+.+.++++++|++|+|
T Consensus 118 ~~~~~~--------~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~ 165 (260)
T PRK09813 118 HAAIWG--------HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVPHLDYAFAS 165 (260)
T ss_pred EEeccc--------hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCCceeEEEec
Confidence 997431 134667888899999999998642 124467889999999876
No 28
>PRK09850 pseudouridine kinase; Provisional
Probab=99.84 E-value=6.6e-20 Score=176.15 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=138.4
Q ss_pred CCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (343)
Q Consensus 121 ~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~ 200 (343)
++..|+|+|++++|+++.++. + +..++ .........+||+++|+|++|++||.
T Consensus 3 ~~~~i~~iG~~~vD~~~~~~~--~----~~~~~---------------~~~~~~~~~~GG~~~NvA~~l~~lG~------ 55 (313)
T PRK09850 3 EKDYVVIIGSANIDVAGYSHE--S----LNYAD---------------SNPGKIKFTPGGVGRNIAQNLALLGN------ 55 (313)
T ss_pred CCCcEEEECcEEEeeeccCCC--c----CcCCC---------------CCceEEEEeCCcHHHHHHHHHHHcCC------
Confidence 456799999999999987643 1 11111 11234678899999999999999999
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEe-cCCCCCCCCchh--hhhccC
Q 019265 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAY-QGTSSTINYDPC--LVNLIS 276 (343)
Q Consensus 201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~-~Ga~~~l~~~di--~~~~i~ 276 (343)
++.++|.||+|.+|+.+++.|++.||+++++.. .+.+|++++++++++|+|++.++ +++...+....+ ..+.++
T Consensus 56 --~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
T PRK09850 56 --KAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQ 133 (313)
T ss_pred --CeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHh
Confidence 899999999999999999999999999998764 45679999999999999988765 355555554433 234578
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++|+++. .+ .+.+..+++++ .|+++++|+++. + ....+.++++++|++++|.
T Consensus 134 ~~~~v~~~~~---~~--~~~~~~~~~~~--~g~~v~~D~~~~-~---~~~~~~~~l~~~dil~~N~ 188 (313)
T PRK09850 134 RAKVIVADCN---IS--EEALAWILDNA--ANVPVFVDPVSA-W---KCVKVRDRLNQIHTLKPNR 188 (313)
T ss_pred cCCEEEEeCC---CC--HHHHHHHHHhc--cCCCEEEEcCCH-H---HHHHHHhhhccceEEccCH
Confidence 9999999753 23 45566666644 589999999853 1 1234678889999999984
No 29
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.83 E-value=1.1e-19 Score=171.17 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=139.2
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
.|+++|++++|+++.+++ ++ .+++. ........+||+++|+|++|++||. +
T Consensus 1 ~v~~~G~~~~D~~~~~~~-~~----------------~~~~~----~~~~~~~~~GG~~~Nva~~l~~lG~--------~ 51 (288)
T cd01941 1 EIVVIGAANIDLRGKVSG-SL----------------VPGTS----NPGHVKQSPGGVGRNIAENLARLGV--------S 51 (288)
T ss_pred CeEEEEeEEEeeeecccC-cc----------------ccCCC----CCeeEEEccCcHHHHHHHHHHHhCC--------C
Confidence 389999999999998765 11 11111 1124568899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEE-ecCCCCCCCCchh--hhhccCCceE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLA-YQGTSSTINYDPC--LVNLISKTNI 280 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~-~~Ga~~~l~~~di--~~~~i~~adi 280 (343)
+.++|.+|+|.+|+.+++.|++.||++..+...+.+|+.++++++++|+|++.. .++....++.+.+ ....+.++++
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKP 131 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCE
Confidence 999999999999999999999999999988755678999999998889998733 3444444443322 3456789999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++.. + +..+..+++.+++.++++++|++.... .++ +.++++++||+++|.
T Consensus 132 v~~~~~~---~--~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~-~~~~~~~~dii~~n~ 184 (288)
T cd01941 132 IVVDANL---P--EEALEYLLALAAKHGVPVAFEPTSAPK---LKK-LFYLLHAIDLLTPNR 184 (288)
T ss_pred EEEeCCC---C--HHHHHHHHHhhhhcCCcEEEEccchHH---hcc-chhhcccceEEeCCH
Confidence 9998642 2 567888999999999999999875311 111 126889999999985
No 30
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.83 E-value=1.7e-20 Score=182.36 Aligned_cols=178 Identities=10% Similarity=0.020 Sum_probs=143.9
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhC-CCCCCCCCC
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLG-GKPIGGPAL 202 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG-~~~~~~~~~ 202 (343)
+|+++|.+++|++...+. ..+..++||+++|+|+++++|| . ..
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------------------------~~~~~~~GG~~~N~A~~~~~l~g~------~~ 44 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------------------------EPVTNVLGGAGTYAILGARLFLPP------PL 44 (328)
T ss_pred CccccCcEEeeccccCCC------------------------------CccccccCCchhhHhhceeeecCC------cc
Confidence 579999999999986531 2345789999999999999984 2 01
Q ss_pred ce--EEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCce
Q 019265 203 NV--AMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTN 279 (343)
Q Consensus 203 ~v--~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~ad 279 (343)
++ .+++.+|+| +|+.+++.|++.||++++ .+ .+.+|+.++++++++|+|.++++++++..++++++....+..++
T Consensus 45 ~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~a~ 122 (328)
T cd01943 45 SRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIRSS 122 (328)
T ss_pred ccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccCCC
Confidence 46 889999999 999999999999999998 54 45789999998888899998888888888888888776788999
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHh------CCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHR------SGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~------~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++|+++... ...+.+.++++.|++ .+.++++|+++.......++.+.++++++||+++|.
T Consensus 123 ~~hl~~~~~---~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~ 188 (328)
T cd01943 123 CIHLICSPE---RCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNL 188 (328)
T ss_pred eEEEECCHH---HHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCH
Confidence 999987531 123788889999998 899999999853221223466889999999999984
No 31
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.81 E-value=8.2e-19 Score=166.65 Aligned_cols=181 Identities=19% Similarity=0.175 Sum_probs=132.7
Q ss_pred cEEEEcCceeeeEEecCh-hHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 124 DVLGLGQAMVDFSGMVDD-DFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~-~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
+|+++|++++|+++.++. .++ +. .+.+. +........+|| +.|+|.+|+|||.
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~------~~------~~~~~-----~~~~~~~~~~GG-~~NvA~~la~LG~-------- 54 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERIS------PE------APVPV-----VKVEREEIRLGG-AANVANNLASLGA-------- 54 (304)
T ss_pred CEEEEcceeEEeeEeecccccc------CC------CCcce-----EEeeeEEecCcH-HHHHHHHHHHhCC--------
Confidence 589999999999997642 011 00 01111 112346678999 5899999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCc------hhhhhccC
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYD------PCLVNLIS 276 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~------di~~~~i~ 276 (343)
++.++|.+|+|.+|+++++.|++.||++.+++..+.+|+.+++++++ +++.+..+.+....++.. +...+.++
T Consensus 55 ~~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (304)
T cd01172 55 KVTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLP 133 (304)
T ss_pred CeEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999865556679988888874 567666665444444432 12234578
Q ss_pred CceEEEEcCcCC-CCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLF-ELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l-~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++|++++.. ..+ .+.+.++++.+++.|++++||++...+ ..++++|++++|.
T Consensus 134 ~~~~v~~s~~~~~~~~--~~~~~~~~~~a~~~~~~v~~D~~~~~~---------~~~~~~d~l~~n~ 189 (304)
T cd01172 134 EADVVILSDYGKGVLT--PRVIEALIAAARELGIPVLVDPKGRDY---------SKYRGATLLTPNE 189 (304)
T ss_pred cCCEEEEEcCCCCccC--HHHHHHHHHHHHhcCCCEEEeCCCcch---------hhccCCcEeCCCH
Confidence 999999988643 122 577889999999999999999986421 4566777777763
No 32
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.3e-19 Score=170.75 Aligned_cols=195 Identities=20% Similarity=0.279 Sum_probs=154.7
Q ss_pred CCCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCC
Q 019265 118 VLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPI 197 (343)
Q Consensus 118 ~~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~ 197 (343)
...+++.|+|+|++++|++..++. .|.+++ ++.+..+...+||.++|+|++++|||.
T Consensus 5 ~~~~~~~vv~fGs~~~D~V~~~~~-----------------~p~~ge---~~~~~~f~~~~GG~~aN~AvaaarLG~--- 61 (330)
T KOG2855|consen 5 VYGEPPLVVVFGSMLIDFVPSTRR-----------------LPNAGE---TWEPPGFKTAPGGKGANQAVAAARLGG--- 61 (330)
T ss_pred cccCCceEEEeccceeeeeecccc-----------------CCCccc---cccCCcceecCCCcchhhhhHHHhcCc---
Confidence 345677899999999999999875 233332 244567899999999999999999999
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCc--hhhhhc
Q 019265 198 GGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYD--PCLVNL 274 (343)
Q Consensus 198 ~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~--di~~~~ 274 (343)
+++|||.||+|.+|+.+.+.|++.+|+++++... +.+|+++.+++..+|++.++++.+++..+.+. ++..+.
T Consensus 62 -----~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~ 136 (330)
T KOG2855|consen 62 -----RVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEV 136 (330)
T ss_pred -----ceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHH
Confidence 8999999999999999999999999999999864 67999999999999999999999998777664 567888
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc----hhhhcHHHHHHhcccCcEEEe
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT----CIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~----~~~~~~e~l~elL~~vDIlf~ 340 (343)
++.++++|+.+-.+...+........++.+++.|..+++||+.+. ........+..+...+|++.+
T Consensus 137 i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~ 206 (330)
T KOG2855|consen 137 IKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKV 206 (330)
T ss_pred HhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccc
Confidence 999999999876543222333333336688888888888888642 123345557777788887754
No 33
>PRK09954 putative kinase; Provisional
Probab=99.80 E-value=1.1e-18 Score=171.39 Aligned_cols=181 Identities=18% Similarity=0.162 Sum_probs=134.2
Q ss_pred CCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (343)
Q Consensus 121 ~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~ 200 (343)
+...|+|+|.+++|+++.++..+| ..++ ........+||++.|+|++|+|||.
T Consensus 56 ~~~~v~viG~~~vD~~~~~~~~~p----------------~~~~-----~~~~~~~~~GG~~~NvA~~larLG~------ 108 (362)
T PRK09954 56 EQEYCVVVGAINMDIRGMADIRYP----------------QAAS-----HPGTIHCSAGGVGRNIAHNLALLGR------ 108 (362)
T ss_pred CCccEEEEEEEEEEEEEeeCCcCc----------------CCCC-----CCceEEEecCcHHHHHHHHHHHcCC------
Confidence 344799999999999998762122 1111 1235678899999999999999999
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecC--CCCCCCCchhh--hhcc
Q 019265 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQG--TSSTINYDPCL--VNLI 275 (343)
Q Consensus 201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~G--a~~~l~~~di~--~~~i 275 (343)
++.|+|.||+|.+|+++++.|++.||+++++.. ++.+|+.++++++++ +++++.+.+ +...++++.+. ...+
T Consensus 109 --~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (362)
T PRK09954 109 --DVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQ-DETVLAINDTHILQQLTPQLLNGSRDLI 185 (362)
T ss_pred --CeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCC-CCEEEEEcCchhhhcCCHHHHHHHHHHH
Confidence 899999999999999999999999999998875 456799988888755 455555544 33455554433 3446
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..++++++++. .| .+.+..+++.+ +++++++|+.+... .+.+.++++++|++++|-
T Consensus 186 ~~~~~v~~~~~---~~--~~~~~~~~~~a--~~~~v~~D~~~~~~----~~~~~~~l~~~dil~~n~ 241 (362)
T PRK09954 186 RHAGVVLADCN---LT--AEALEWVFTLA--DEIPVFVDTVSEFK----AGKIKHWLAHIHTLKPTQ 241 (362)
T ss_pred hcCCEEEEECC---CC--HHHHHHHHHhC--CCCcEEEECCCHHH----hhhhhhhhccccEEecCH
Confidence 78899998753 23 45555666655 47999999975321 134678899999999984
No 34
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.79 E-value=6.6e-18 Score=160.45 Aligned_cols=173 Identities=19% Similarity=0.166 Sum_probs=131.8
Q ss_pred EEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceEE
Q 019265 127 GLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAM 206 (343)
Q Consensus 127 viG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~l 206 (343)
|.=++++|+++.+++ ++ +++. +...+...++||++.|+|++|++||. ++.+
T Consensus 4 ~~~~~~~D~~~~~~~-~~-----------------~g~~---~~~~~~~~~~GG~~~NvA~~la~lG~--------~v~~ 54 (304)
T TIGR03828 4 VTLNPAIDLTIELDG-LT-----------------LGEV---NRVESTRIDAGGKGINVSRVLKNLGV--------DVVA 54 (304)
T ss_pred EEcchHHeEEEEccc-cc-----------------cCce---eecccccccCCccHHHHHHHHHHcCC--------CeEE
Confidence 344799999999986 22 2221 22346788999999999999999999 8999
Q ss_pred EEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh------hhccCCceE
Q 019265 207 TGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL------VNLISKTNI 280 (343)
Q Consensus 207 ig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~------~~~i~~adi 280 (343)
+|.||+| +|+.+++.|++.||+++++... .+|++++++++++|+|+++.++++. ++..++. .+.++++++
T Consensus 55 is~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 130 (304)
T TIGR03828 55 LGFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGPE--ISEEELEALLEKLRAQLAEGDW 130 (304)
T ss_pred EEEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCE
Confidence 9999999 6999999999999999988765 4688888888888999888777653 4433322 235789999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHH-hcccCcEEEee
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWY-EYYMVLIVVLE 341 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~e-lL~~vDIlf~~ 341 (343)
+|++|+.... .+.+.+..+++.+++.+++++||++... +++ +...+||+++|
T Consensus 131 v~~~g~~~~~-~~~~~~~~~~~~~~~~~~~v~~D~~~~~--------~~~~~~~~~~i~~~n 183 (304)
T TIGR03828 131 LVLSGSLPPG-VPPDFYAELIALAREKGAKVILDTSGEA--------LRDGLKAKPFLIKPN 183 (304)
T ss_pred EEEECCCCCC-CCHHHHHHHHHHHHHcCCEEEEECChHH--------HHHHHhcCCcEECcC
Confidence 9999985321 1257788999999999999999997531 122 22346777776
No 35
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.77 E-value=1.1e-17 Score=160.10 Aligned_cols=184 Identities=19% Similarity=0.188 Sum_probs=131.4
Q ss_pred CCCCccEEEEcCceeeeEEe--cChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCC
Q 019265 119 LPERWDVLGLGQAMVDFSGM--VDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKP 196 (343)
Q Consensus 119 ~~~~~~VlviG~~~vDii~~--vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~ 196 (343)
.++..+|+++|.+++|+++. ++. +. + ..+.+.. .......++|| ++|+|++|++||.
T Consensus 4 ~~~~~~il~iG~~~iD~~~~~~~~~-~~------~------~~~~~~~-----~~~~~~~~~GG-a~NvA~~l~~lg~-- 62 (315)
T TIGR02198 4 SFKGAKVLVVGDVMLDRYWYGKVSR-IS------P------EAPVPVV-----KVEREEDRLGG-AANVARNIASLGA-- 62 (315)
T ss_pred hhCCCcEEEECceeEeeeeeecccc-cC------C------CCCCceE-----EEEEEEecCcH-HHHHHHHHHhcCC--
Confidence 34578899999999999987 322 00 0 0111111 12345678999 7999999999999
Q ss_pred CCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEE-ecCCCCCCCCc------
Q 019265 197 IGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLA-YQGTSSTINYD------ 268 (343)
Q Consensus 197 ~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~-~~Ga~~~l~~~------ 268 (343)
++.++|.||+|.+|+++++.|++.||++.++.. ++.+|+.++++++++ +.++. .......++..
T Consensus 63 ------~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 134 (315)
T TIGR02198 63 ------RVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARN--QQLLRVDFEERDPINAELEARLL 134 (315)
T ss_pred ------ceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCC--eEEEEecCCCCCCCCHHHHHHHH
Confidence 899999999999999999999999999988875 456899999888753 33332 22222223321
Q ss_pred hhhhhccCCceEEEEcCcCC-CCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 269 PCLVNLISKTNIFIVEGYLF-ELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 269 di~~~~i~~adiv~isG~~l-~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+...+.+++++++|++++.. ..+ .+.+..+++.|++.|++|+||+++.. ...++++|++++|.
T Consensus 135 ~~~~~~l~~~~~v~~~~~~~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~d~l~~n~ 198 (315)
T TIGR02198 135 AAIREQLASADAVVLSDYAKGVLT--PRVVQEVIAAARKHGKPVLVDPKGKD---------FSRYRGATLITPNR 198 (315)
T ss_pred HHHHhhhhhCCEEEEecCCCCccC--HHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcCCCcEECCCH
Confidence 11234578999999998753 223 57788999999999999999998531 12456777777763
No 36
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.77 E-value=2.5e-17 Score=157.86 Aligned_cols=177 Identities=20% Similarity=0.264 Sum_probs=132.7
Q ss_pred EEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCce
Q 019265 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNV 204 (343)
Q Consensus 125 VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v 204 (343)
+.+..++++|+++.+++ ++ +++.. ........+||++.|+|++|++||. ++
T Consensus 3 ~~~t~np~~D~~~~~~~-~~------~~~~~--------------~~~~~~~~~GG~~~NvA~~la~LG~--------~~ 53 (309)
T PRK13508 3 LTVTLNPSIDISYPLDE-LK------LDTVN--------------RVVDVSKTAGGKGLNVTRVLSEFGE--------NV 53 (309)
T ss_pred EEEecChHHeEEEEeCC-ee------eCCeE--------------EecceeecCCchHHHHHHHHHHcCC--------Ce
Confidence 34558999999999876 22 22211 1235678899999999999999999 89
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh------hhhccCCc
Q 019265 205 AMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC------LVNLISKT 278 (343)
Q Consensus 205 ~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di------~~~~i~~a 278 (343)
.++|.+|+ .+|+.+++.|++ ||++++++.. ..|+.++++++ +|+|+++.++++. +..++. ..+.+.++
T Consensus 54 ~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 127 (309)
T PRK13508 54 LATGLIGG-ELGQFIAEHLDD-QIKHAFYKIK-GETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESV 127 (309)
T ss_pred EEEEEecC-hhHHHHHHHHHc-CCCceEEECC-CCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCC
Confidence 99999995 789999999999 9999886654 46888888876 7899998888764 333221 13457899
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++|++|+..... ..+.+..+++.|++.|++++||++... ...+...++++|++++|.
T Consensus 128 ~~v~~~g~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dii~~n~ 185 (309)
T PRK13508 128 EVVAISGSLPAGL-PVDYYAQLIELANQAGKPVVLDCSGAA-----LQAVLESPYKPTVIKPNI 185 (309)
T ss_pred CEEEEeCCCCCCc-CHHHHHHHHHHHHHCCCEEEEECCcHH-----HHHHHhccCCceEEccCH
Confidence 9999998753221 246788899999999999999998531 122333456889988874
No 37
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.76 E-value=2.3e-17 Score=158.13 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=134.5
Q ss_pred EEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceE
Q 019265 126 LGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVA 205 (343)
Q Consensus 126 lviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~ 205 (343)
.+.=++.+|+.+.+.+ ++ +++.. ...++..++||+++|+|++|++||. ++.
T Consensus 3 ~~~~~p~~d~~~~~~~-~~------~~~~~--------------~~~~~~~~~GG~~~NvA~~la~LG~--------~v~ 53 (309)
T TIGR01231 3 TVTLNPSVDISYPLTA-LK------LDTVN--------------RVQEVSKTAGGKGLNVTRVLAQVGD--------PVL 53 (309)
T ss_pred EEEcchHHeEEEEcCC-ee------eCceE--------------eeceeeecCCccHHHHHHHHHHcCC--------CeE
Confidence 3456899999888765 22 22211 1245778999999999999999999 899
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCc----hhhhhccCCceEE
Q 019265 206 MTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYD----PCLVNLISKTNIF 281 (343)
Q Consensus 206 lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~----di~~~~i~~adiv 281 (343)
++|.+|+| +|+++++.|++.||++.++... ..|+.+++++. +|+|+++.+++++...... +...+.+++++++
T Consensus 54 ~i~~vG~~-~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 130 (309)
T TIGR01231 54 ASGFLGGK-LGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVV 130 (309)
T ss_pred EEEEecCh-hHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEE
Confidence 99999974 9999999999999999988754 35777777775 7899999888864322111 1223457899999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
|++|+.... .....+..+++.|++.|++++||++... ...+.+.++++|++++|.
T Consensus 131 ~~~g~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dil~~n~ 185 (309)
T TIGR01231 131 AISGSLPKG-LPQDYYAQIIERCQNKGVPVVLDCSGAT-----LQTVLENPAKPTVIKPNI 185 (309)
T ss_pred EEECCCCCC-cCHHHHHHHHHHHHhCCCeEEEECChHH-----HHHHHhccCCCeEEcCCH
Confidence 999985321 1257788999999999999999998632 123445567899999874
No 38
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.76 E-value=1.8e-17 Score=168.12 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCC
Q 019265 118 VLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPI 197 (343)
Q Consensus 118 ~~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~ 197 (343)
..+.+.+|+|+|++++|+++.++.+- +.+ +.+... +........+|| ++|+|++|++||.
T Consensus 6 ~~~~~~~ilviG~~~lD~~~~~~~~~-----~~~--------~~~~~~---~~~~~~~~~~GG-a~NvA~~la~LG~--- 65 (473)
T PRK11316 6 PDFERAGVLVVGDVMLDRYWYGPTSR-----ISP--------EAPVPV---VKVNQIEERPGG-AANVAMNIASLGA--- 65 (473)
T ss_pred HhhCCCcEEEECccEEeeeeecccce-----eCC--------CCCCCE---EEeeeEEecCcH-HHHHHHHHHHcCC---
Confidence 34567789999999999999863200 000 011111 123457788999 6999999999999
Q ss_pred CCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh---hhhc
Q 019265 198 GGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC---LVNL 274 (343)
Q Consensus 198 ~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di---~~~~ 274 (343)
++.++|.+|+|.+|+++++.|++.||+++++...+.+|++++++++.+++............+..+.+ ....
T Consensus 66 -----~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (473)
T PRK11316 66 -----QARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQA 140 (473)
T ss_pred -----cEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHH
Confidence 89999999999999999999999999999887766789999888874433222111111122233332 2355
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++++|++++... ..+.+..+++.+++.|+++++||+... ...++.+|++++|.
T Consensus 141 l~~~~~v~is~~~~~---~~~~~~~~~~~~k~~g~~vv~Dp~~~~---------~~~~~~~dil~pN~ 196 (473)
T PRK11316 141 LPSIGALVLSDYAKG---ALASVQAMIQLARKAGVPVLIDPKGTD---------FERYRGATLLTPNL 196 (473)
T ss_pred hccCCEEEEecCCcc---chhHHHHHHHHHHhcCCeEEEeCCCCC---------ccccCCCeEECcCH
Confidence 789999999887531 235678899999999999999997531 12345677777763
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.75 E-value=6.9e-17 Score=152.90 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=133.4
Q ss_pred EEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceE
Q 019265 126 LGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVA 205 (343)
Q Consensus 126 lviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~ 205 (343)
.++|++++|+++.+++ ++ ++ +. +...+....+||+++|+|++|++||. ++.
T Consensus 4 ~~~~~~~~D~~~~~~~-~~------~~-----------~~---~~~~~~~~~~GG~~~Nva~~la~lG~--------~v~ 54 (289)
T cd01164 4 TVTLNPAIDLTIELDQ-LQ------PG-----------EV---NRVSSTRKDAGGKGINVARVLKDLGV--------EVT 54 (289)
T ss_pred EEecChHHeEEEEcCc-cc------CC-----------ce---eecccccccCCcchhHHHHHHHHcCC--------CeE
Confidence 5789999999999987 22 11 11 22345678999999999999999999 899
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh------hhccCCce
Q 019265 206 MTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL------VNLISKTN 279 (343)
Q Consensus 206 lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~------~~~i~~ad 279 (343)
++|.||+| +|+.+++.|++.||++.++... .+|++++++++.+|+++.+.+.++. ++++++. .+.+++++
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGPE--ISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCC
Confidence 99999999 8999999999999999988764 4678888888777788777666543 4443321 13467899
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhc-ccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEY-YMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL-~~vDIlf~~~ 342 (343)
++|++|+... ..+.+.+..+++.+++.++++++|++... +.+++ +++||+++|.
T Consensus 131 ~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~i~~D~~~~~--------~~~~~~~~~dil~~n~ 185 (289)
T cd01164 131 IVVLSGSLPP-GVPADFYAELVRLAREKGARVILDTSGEA--------LLAALAAKPFLIKPNR 185 (289)
T ss_pred EEEEeCCCCC-CcCHHHHHHHHHHHHHcCCeEEEECChHH--------HHHHHhcCCcEECCCH
Confidence 9999986431 11246788899999999999999997521 22333 6899998874
No 40
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.75 E-value=5e-17 Score=154.86 Aligned_cols=172 Identities=22% Similarity=0.230 Sum_probs=130.6
Q ss_pred cCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEE
Q 019265 129 GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTG 208 (343)
Q Consensus 129 G~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig 208 (343)
=++.+|+++.+++ + .+|. . ....+...++||++.|+|++++|||. ++.++|
T Consensus 6 ~~~~~D~~~~~~~-~------~~~~-----------~---~~~~~~~~~~GG~~~N~a~~l~~lg~--------~~~~i~ 56 (303)
T TIGR03168 6 LNPAIDLTIEVDG-L------TPGE-----------V---NRVAAVRKDAGGKGINVARVLARLGA--------EVVATG 56 (303)
T ss_pred cchHHeEEEEcCc-c------ccCc-----------e---eecCcccccCCcchhhHHHHHHHcCC--------CeEEEE
Confidence 4678999998876 1 1221 1 12345678999999999999999999 899999
Q ss_pred EcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhh------hhccCCceEEE
Q 019265 209 SVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL------VNLISKTNIFI 282 (343)
Q Consensus 209 ~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~------~~~i~~adiv~ 282 (343)
.||+| +|+.+++.|++.||++.++... ..|++++++++++|+|+.+.+++. .++++++. .+.+++++++|
T Consensus 57 ~vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~ 132 (303)
T TIGR03168 57 FLGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVV 132 (303)
T ss_pred EeCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEE
Confidence 99999 7999999999999999998764 467788888888888887777654 35544332 13588999999
Q ss_pred EcCcCCC-CCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 283 VEGYLFE-LPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 283 isG~~l~-~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++++... . +.+.+..+++.++++|++++||++... . ...+..++||+++|.
T Consensus 133 i~~~~~~~~--~~~~~~~~~~~~~~~g~~v~~D~~~~~----~---~~~~~~~~dil~~n~ 184 (303)
T TIGR03168 133 ISGSLPPGV--PPDFYAQLIAIARKRGAKVILDTSGEA----L---REALAAKPFLIKPNH 184 (303)
T ss_pred EeCCCCCCC--CHHHHHHHHHHHHHCCCEEEEECCcHH----H---HHHHhcCCcEECCCH
Confidence 9987431 2 257788999999999999999997521 1 122335789998873
No 41
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.74 E-value=1.2e-16 Score=153.32 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=132.6
Q ss_pred CccEE-EEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265 122 RWDVL-GLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (343)
Q Consensus 122 ~~~Vl-viG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~ 200 (343)
++ |+ +.=++++|+++.+++ |+ +| +. .......+++||++.|+|++|++||.
T Consensus 3 ~~-~~~~~~~p~~D~~~~~~~-~~------~~-----------~~---~~~~~~~~~~GG~~~Nva~~la~lG~------ 54 (312)
T PRK09513 3 RR-VATITLNPAYDLVGFCPE-IE------RG-----------EV---NLVKTTGLHAAGKGINVAKVLKDLGI------ 54 (312)
T ss_pred ce-EEEEecChHHeEEEEcCc-ee------cC-----------Ce---eeecceeecCCchHHHHHHHHHHcCC------
Confidence 44 55 445999999999876 32 12 21 12346789999999999999999999
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh------hhhc
Q 019265 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC------LVNL 274 (343)
Q Consensus 201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di------~~~~ 274 (343)
++.++|.||+|.+|++ ++.|++.||++.+++.. .+|+.++++++++|+|+++.+++. .+++.+. ....
T Consensus 55 --~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 128 (312)
T PRK09513 55 --DVTVGGFLGKDNQDGF-QQLFSELGIANRFQVVQ-GRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSW 128 (312)
T ss_pred --CeEEEEEecCccHHHH-HHHHHHcCCCccEEECC-CCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhh
Confidence 8999999999999997 58999999998876544 578988888888899998887763 2443322 1345
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
+++++++|++|+... +...+.+.++++.+++.|.+++||++... ....+..+.|++++|
T Consensus 129 l~~~d~v~~~g~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-------~~~~~~~~~~~l~~n 187 (312)
T PRK09513 129 LGQFDMVAVSGSLPR-GVSPEAFTDWMTRLRSQCPCIIFDSSREA-------LVAGLKAAPWLVKPN 187 (312)
T ss_pred cCCCCEEEEECCCCC-CCCHHHHHHHHHHHHhcCCEEEEECChHH-------HHHHhccCCeEEcCC
Confidence 789999999997542 12357888999999999999999998531 111233456666665
No 42
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.74 E-value=1.2e-16 Score=153.20 Aligned_cols=177 Identities=18% Similarity=0.156 Sum_probs=133.1
Q ss_pred EEEE-cCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 125 VLGL-GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 125 Vlvi-G~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
|++| =+|.+|+++.+++ | .+|.... .......+||++.|+|++|++||. +
T Consensus 4 i~~~~~~p~~d~~~~~~~-~------~~~~~~~--------------~~~~~~~~GG~~~NvA~~l~~lG~--------~ 54 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQ-I------YPEGKLR--------------CSAPVFEPGGGGINVARAIAHLGG--------S 54 (309)
T ss_pred EEEEecChHHeEEEEeCc-e------eeCCeEE--------------eccceecCCccHHHHHHHHHHcCC--------C
Confidence 4555 6999999999975 2 2333222 345667899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhh-----hccCCc
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLV-----NLISKT 278 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~-----~~i~~a 278 (343)
+.+++.+|+ .+|+.+++.|++.||++.++...+..+..++++++++|+|+++.++++. ++.+++.. ..++++
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 131 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESG 131 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCCC
Confidence 999999996 7999999999999999999886544455556667778899888887754 44443321 236789
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHh--cccCcEEEeec
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYE--YYMVLIVVLEF 342 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~el--L~~vDIlf~~~ 342 (343)
+++|++|+... ..+.+.+.++++.+++.|++++||++... ++.. ++++|++++|.
T Consensus 132 ~~~~i~g~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--------~~~~~~~~~~~~i~~n~ 188 (309)
T PRK10294 132 AILVISGSLPP-GVKLEKLTQLISAAQKQGIRCIIDSSGDA--------LSAALAIGNIELVKPNQ 188 (309)
T ss_pred CEEEEeCCCCC-CCCHHHHHHHHHHHHHcCCeEEEeCCCHH--------HHHHHhcCCCeEECCCH
Confidence 99999997532 12357889999999999999999997421 1222 45788888774
No 43
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.72 E-value=2e-16 Score=146.95 Aligned_cols=162 Identities=15% Similarity=0.049 Sum_probs=118.1
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
+|+++|++++|++...+ .....+||+++|+|++|++||. +
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------------------~~~~~~GG~~~Nva~~la~lG~--------~ 40 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------------------------------SGVVKPGGPATYASLTLSRLGL--------T 40 (254)
T ss_pred CeEEEcceeEEEEecCC--------------------------------ceEEecCchhhhHHHHHHHhCC--------C
Confidence 58999999999997532 2347899999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIV 283 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~i 283 (343)
+.++|.||+|..|+ ++.|++.||++..+ ....|+.+++.++.+|+|.++.+.+++...... ...+.+++++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 68899999996533 333566666666767899888887765433222 234678999999
Q ss_pred cCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc-hhhhcHHHHHHhcccCcEEEeec
Q 019265 284 EGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT-CIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 284 sG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~-~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++. .+....+.+.+ ++|++|++... ........+.++++++||+++|.
T Consensus 114 ~~~~------~~~~~~~~~~~----~~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~ 163 (254)
T cd01937 114 GPVP------EEISPSLFRKF----AFISLDAQGFLRRANQEKLIKCVILKLHDVLKLSR 163 (254)
T ss_pred CCCc------chhcHHHHhhh----hheeEccccceeeccccchHHHhhcccCcEEEEcH
Confidence 8642 23333333332 78999998531 01122233678999999999985
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.69 E-value=8.7e-16 Score=150.23 Aligned_cols=168 Identities=15% Similarity=0.040 Sum_probs=131.6
Q ss_pred CCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCC
Q 019265 121 ERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGP 200 (343)
Q Consensus 121 ~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~ 200 (343)
...+|++||++++|+++.+.. .....+||+++|+|.+|+|||.
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~-------------------------------~~~~~~GG~a~N~A~alarLG~------ 52 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS-------------------------------VTAESLGGAASFISNVLDALSV------ 52 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc-------------------------------EEEEecCcHHHHHHHHHHHcCC------
Confidence 346799999999999987521 1346899999999999999999
Q ss_pred CCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECC-----CCCeEEEEecCCCCCCCCchhhhhcc
Q 019265 201 ALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP-----DAQRAMLAYQGTSSTINYDPCLVNLI 275 (343)
Q Consensus 201 ~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~-----dGeRt~i~~~Ga~~~l~~~di~~~~i 275 (343)
++.++|+||+|.. .+|+...+...+.+|+.+++++++ +|+|.++.+++++..++++++....+
T Consensus 53 --~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~~~ 120 (335)
T PLN02630 53 --ECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDMRY 120 (335)
T ss_pred --ceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHHHh
Confidence 8999999999952 367765554455689999888876 56899999999999999988866557
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHh-----CCCEEEEECCCc-chh-hhcHHHHHHhcccCcEEEeec
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHR-----SGALVAVTASDV-TCI-ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~-----~G~~V~fD~s~~-~~~-~~~~e~l~elL~~vDIlf~~~ 342 (343)
..++++++.+.. + ++...++++.|+. +|+.++||+++. ... +.....+.++++++||+++|.
T Consensus 121 ~~~~~~~l~~ei---~--~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne 189 (335)
T PLN02630 121 EFGMAVGVAGEI---L--PETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASS 189 (335)
T ss_pred cccceeeecCCC---c--HHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecH
Confidence 788889887642 2 5778889999988 799999999863 111 111134678999999999984
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.65 E-value=2.1e-15 Score=142.08 Aligned_cols=168 Identities=14% Similarity=0.067 Sum_probs=117.6
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
.|+|+|.+++|++.... ......+||++.|+|++|+||| +
T Consensus 1 ~v~~~G~~~~D~~~~~~-------------------------------~~~~~~~GG~a~N~a~~la~lg---------~ 40 (277)
T cd01946 1 SLLVVGSVAFDAIETPF-------------------------------GKVDKALGGSATYFSLSASYFT---------D 40 (277)
T ss_pred CeEEEEEeeeeeecCCC-------------------------------ceeeeccCchHHHHHHHHHHhc---------c
Confidence 38999999999993211 0134679999999999999995 4
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC-CCCceEEEEEE--CCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK-DGTTGTVIVLT--TPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~-~~~Tg~~iVli--d~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
+.++|.||+| +|+.+++.|++.||+++++.+. +.+|....... +.++++++....+....+.+. + ...++++++
T Consensus 41 v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 117 (277)
T cd01946 41 VRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ-L-PEHYKDSEF 117 (277)
T ss_pred ceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC-C-hHHhhcCCE
Confidence 9999999999 8999999999999999999863 44552211110 112333333322222223221 1 245788999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|+++. + ++...++++.+++. .+|+||+.. .|.....+.++++++++|++++|.
T Consensus 118 v~~~~~----~--~~~~~~~~~~~~~~-~~v~~D~~~-~~~~~~~~~~~~~l~~~d~~~~n~ 171 (277)
T cd01946 118 VFLGNI----A--PELQREVLEQVKDP-KLVVMDTMN-FWISIKPEKLKKVLAKVDVVIIND 171 (277)
T ss_pred EEECCC----C--HHHHHHHHHHHHhC-CEEEEccHH-HhhhhhHHHHHHHhccCCEEeCCH
Confidence 999864 2 46677888888877 899999843 232224567889999999999984
No 46
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.1e-13 Score=135.50 Aligned_cols=191 Identities=17% Similarity=0.128 Sum_probs=136.6
Q ss_pred CCCCCCCccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCC
Q 019265 116 ASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGK 195 (343)
Q Consensus 116 ~~~~~~~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~ 195 (343)
++...+..+|+|+|++|+|.++..... +...+.|.| + +.......++|| |+|+|.+++.||.
T Consensus 4 ~~~~f~~~kVLVvGDvmLDrY~~G~~~-----------RISPEAPVP--V---v~v~~e~~rlGG-AaNVa~NiasLGa- 65 (467)
T COG2870 4 LLPNFKQAKVLVVGDVMLDRYWYGKVS-----------RISPEAPVP--V---VKVEKEEERLGG-AANVAKNIASLGA- 65 (467)
T ss_pred hhhhhcCCcEEEEcceeeeeecccccc-----------ccCCCCCCc--e---EEeccccccccc-HHHHHHHHHHcCC-
Confidence 455677889999999999999986531 112222322 1 223456678999 7999999999999
Q ss_pred CCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCC-Cch---hh
Q 019265 196 PIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTIN-YDP---CL 271 (343)
Q Consensus 196 ~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~-~~d---i~ 271 (343)
++.++|.+|.|..|+.+++.|.+.+|+..+++.+..+|....-++..+ |.-+........... ... ..
T Consensus 66 -------~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~n-QQllRvD~Ee~~~~~~~~~ll~~~ 137 (467)
T COG2870 66 -------NAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRN-QQLLRLDFEEKFPIEDENKLLEKI 137 (467)
T ss_pred -------CEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeeccc-ceEEEecccccCcchhHHHHHHHH
Confidence 899999999999999999999999999888888888898887777633 322222221111111 111 24
Q ss_pred hhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc--------hhhhcHHHHHHhcccC
Q 019265 272 VNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT--------CIERHYDDFWYEYYMV 335 (343)
Q Consensus 272 ~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~--------~~~~~~e~l~elL~~v 335 (343)
.+.+++.++++++.|.-- ....+..+++.||++|++|.+||.... ++.+++.++++++..+
T Consensus 138 ~~~l~~~~~vVLSDY~KG---~L~~~q~~I~~ar~~~~pVLvDPKg~Df~~Y~GAtLiTPN~~E~~~~vg~~ 206 (467)
T COG2870 138 KNALKSFDALVLSDYAKG---VLTNVQKMIDLAREAGIPVLVDPKGKDFEKYRGATLITPNLKEFEEAVGKC 206 (467)
T ss_pred HHHhhcCCEEEEeccccc---cchhHHHHHHHHHHcCCcEEECCCCcchhhhCCCeecCCCHHHHHHHHccc
Confidence 567889999999999631 123378899999999999999998742 2355666666665443
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=6e-13 Score=122.81 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=137.8
Q ss_pred CccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCC
Q 019265 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA 201 (343)
Q Consensus 122 ~~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~ 201 (343)
+..|+|+|.+.+|++--++. + |.++..... .+-..+-||.+.|+..+|++||.
T Consensus 4 ~k~VLcVG~~~lD~iTivd~-~----------------~fe~~~~r~---~~g~wqRgG~asNvcTvlrlLG~------- 56 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDK-Y----------------PFEDSEIRC---LSGRWQRGGNASNVCTVLRLLGA------- 56 (308)
T ss_pred cceEEEeccEEEEEEEeccC-C----------------CCCccceeh---hhhhhhcCCCcchHHHHHHHhCC-------
Confidence 36799999999999998875 1 222222122 23346789999999999999999
Q ss_pred CceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEEC-CCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTT-PDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 202 ~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid-~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
++.|+|.+.....-+.+++.|++.||++++....+......-|+++ ..|.||++.+..+...++..+...-.+.+..|
T Consensus 57 -~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~W 135 (308)
T KOG2947|consen 57 -PCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYGW 135 (308)
T ss_pred -chheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceeee
Confidence 8999999999889999999999999999998866655555555554 46899999999888888888776556789999
Q ss_pred EEEcCcCCCCC-chHHHHHHHHHHHH----hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 281 FIVEGYLFELP-DTIRTITKACEVAH----RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 281 v~isG~~l~~p-~s~~~i~~ll~~Ak----~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+|+.+- .| ...+.+..+.+.-. +.++.+++|+-. .++.+..++.++|++|++.
T Consensus 136 ihfE~R---np~etlkM~~~I~~~N~r~pe~qrI~vSvd~en------~req~~~l~am~DyVf~sK 193 (308)
T KOG2947|consen 136 IHFEAR---NPSETLKMLQRIDAHNTRQPEEQRIRVSVDVEN------PREQLFQLFAMCDYVFVSK 193 (308)
T ss_pred EEEecC---ChHHHHHHHHHHHHhhcCCCccceEEEEEEecC------cHHHHHHHhhcccEEEEEH
Confidence 999963 23 11222233322211 246778888754 4677888999999999874
No 48
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.7e-12 Score=123.61 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=132.8
Q ss_pred cCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEE
Q 019265 129 GQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTG 208 (343)
Q Consensus 129 G~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig 208 (343)
=++.+|+.+.+++ ++.|... ........+||.+.|||..|+.||. ++...|
T Consensus 7 LNPaiD~~~~l~~-------l~~g~vN--------------r~~~~~~~aGGKGINVa~vL~~lG~--------~~~a~G 57 (310)
T COG1105 7 LNPALDYTVFLDE-------LELGEVN--------------RVRAVTKTAGGKGINVARVLKDLGI--------PVTALG 57 (310)
T ss_pred cChhHhheeeccc-------cccccee--------------eeccceecCCCCceeHHHHHHHcCC--------CceEEE
Confidence 5899999999875 2333221 1245678999999999999999999 899999
Q ss_pred EcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECC-CCCeEEEEecCCCCCCCCchh------hhhccCCceEE
Q 019265 209 SVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP-DAQRAMLAYQGTSSTINYDPC------LVNLISKTNIF 281 (343)
Q Consensus 209 ~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~-dGeRt~i~~~Ga~~~l~~~di------~~~~i~~adiv 281 (343)
.+|.+ .|++|.+.|++.||...++++. ++|..++.+.+. +|+-|-+..+|. .++.+++ ....++..|+|
T Consensus 58 flGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~~~~l~~~d~V 133 (310)
T COG1105 58 FLGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQLKALLESDDIV 133 (310)
T ss_pred ecCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHHHHhcccCCEE
Confidence 99997 8999999999999999998765 579999999886 566788887774 4544432 23457889999
Q ss_pred EEcCcCC-CCCchHHHHHHHHHHHHhCCCEEEEECCCc----------chhhhcHHHHHHhc
Q 019265 282 IVEGYLF-ELPDTIRTITKACEVAHRSGALVAVTASDV----------TCIERHYDDFWYEY 332 (343)
Q Consensus 282 ~isG~~l-~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~----------~~~~~~~e~l~elL 332 (343)
+++|... ..| .+.+.++++.+++.|+++++|.+.. +.++++.+++..++
T Consensus 134 vlsGSlP~g~~--~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~ 193 (310)
T COG1105 134 VLSGSLPPGVP--PDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALF 193 (310)
T ss_pred EEeCCCCCCCC--HHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHh
Confidence 9999743 233 7899999999999999999999852 34566666666654
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.37 E-value=7e-12 Score=111.02 Aligned_cols=117 Identities=26% Similarity=0.250 Sum_probs=92.4
Q ss_pred cEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCCc
Q 019265 124 DVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALN 203 (343)
Q Consensus 124 ~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~ 203 (343)
.|+++|++++|+++.++. .|.+++. +........+||.+.|+|.+|++||. +
T Consensus 1 ~v~~iG~~~~D~~~~~~~-----------------~~~~~~~---~~~~~~~~~~GG~~~n~a~~l~~LG~--------~ 52 (196)
T cd00287 1 RVLVVGSLLVDVILRVDA-----------------LPLPGGL---VRPGDTEERAGGGAANVAVALARLGV--------S 52 (196)
T ss_pred CEEEEccceEEEEEEecc-----------------CCCCCCe---EEeceeeecCCCcHHHHHHHHHHCCC--------c
Confidence 489999999999999875 1233322 22346778999999999999999999 8
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIV 283 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~i 283 (343)
+.++| ++++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 799999
Q ss_pred cCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 284 EGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 284 sG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++.. . .+.+.++++.+++.|+++++|++...... ..+.+.++++++|++++|.
T Consensus 64 ~~~~~---~-~~~~~~~~~~~~~~~~~v~~D~~~~~~~~-~~~~~~~~~~~~dvl~~n~ 117 (196)
T cd00287 64 SGLSP---A-PEAVLDALEEARRRGVPVVLDPGPRAVRL-DGEELEKLLPGVDILTPNE 117 (196)
T ss_pred ecccC---c-HHHHHHHHHHHHHcCCeEEEeCCcccccc-ccchHHHHHhhCCEECCCH
Confidence 98642 1 36788899999999999999999753322 2233778899999999984
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.21 E-value=4e-06 Score=83.99 Aligned_cols=121 Identities=25% Similarity=0.391 Sum_probs=85.0
Q ss_pred ccEEEEcCceeeeEEecChhHHHhhccccCcceecccccccceeeecccCceEEecCChHHHHHHHHHHhCCCCCCCCCC
Q 019265 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPAL 202 (343)
Q Consensus 123 ~~VlviG~~~vDii~~vd~~fl~~~~L~~g~~~lv~~p~~~~~~~~i~~~~~~~~~GGsa~NvA~aLArLG~~~~~~~~~ 202 (343)
.+-+++|...+|+.+.++++ ++. .+.. ......+..||.+.|.|-++++||.
T Consensus 341 ~KPv~vGa~i~D~~~k~d~d-----------~K~-----dG~s----y~~~~~Qa~GGVarN~A~a~~~lg~-------- 392 (614)
T KOG3009|consen 341 RKPVSVGATIVDFEAKTDED-----------VKD-----DGGS----YNGQVVQAMGGVARNHADALARLGC-------- 392 (614)
T ss_pred cCceeecceEEEeEEeeccc-----------ccc-----cCCc----ccchhhhhccchhhhHHHHHHHhcC--------
Confidence 34599999999999999862 111 1111 1235668899999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI 282 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~ 282 (343)
++.||++||+|..|++.+. .+ ...-+...+++ ++++++
T Consensus 393 d~~liSavG~d~n~~~~~~---------------------------------------~~--~~~~e~~~dl~-~a~~I~ 430 (614)
T KOG3009|consen 393 DSVLISAVGDDNNGHFFRQ---------------------------------------NS--HKIVESNEDLL-SADFIL 430 (614)
T ss_pred CeeEEEEeccCCcchhhhh---------------------------------------hh--hhhhhhhhhhh-cCCEEE
Confidence 8999999999921111100 00 00112233444 899999
Q ss_pred EcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc
Q 019265 283 VEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT 319 (343)
Q Consensus 283 isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~ 319 (343)
+++.. ++..+.++++ |+++.++|+|.|.+.+
T Consensus 431 ~DsNi-----S~~~Ma~il~-ak~~k~~V~fEPTd~~ 461 (614)
T KOG3009|consen 431 LDSNI-----SVPVMARILE-AKKHKKQVWFEPTDID 461 (614)
T ss_pred EcCCC-----CHHHHHHHHH-hhhccCceEecCCCch
Confidence 99753 3678888888 9999999999998743
No 51
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=94.76 E-value=0.73 Score=47.29 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=85.7
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEE--EEEcCCChHHHHHHHHHHhCCCCcc-------------------
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAM--TGSVGSDPLGGFYRAKLRRANVAFC------------------- 231 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~l--ig~VG~D~~G~~I~~~L~~~GVd~~------------------- 231 (343)
....+.||.|..+|..+|++|. ++.+ +..++ +..++.|...+|-.-
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~--------~~Vi~~~~~ls-----k~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~ 151 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGA--------SRVVPNVAVPS-----KTQLSLFSKKAVYFPGMPLQASETDGEKVGASSS 151 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCC--------ceEEEcCCCCC-----HHHHHhcCCCCEEeccccccccccCccccccccC
Confidence 3468999999999999999999 4333 22222 333344422222111
Q ss_pred ---eee-eCCCCceEEE-----EEECCCCCeEEEEecCCCCCCCCch-h---hhhccCCceEEEEcCcCCC---CCc--h
Q 019265 232 ---SEP-IKDGTTGTVI-----VLTTPDAQRAMLAYQGTSSTINYDP-C---LVNLISKTNIFIVEGYLFE---LPD--T 293 (343)
Q Consensus 232 ---~v~-~~~~~Tg~~i-----Vlid~dGeRt~i~~~Ga~~~l~~~d-i---~~~~i~~adiv~isG~~l~---~p~--s 293 (343)
.+. +-+-+.|..+ -++.|.-.|-++.+.-.+..+...+ + ..+...++|.++++||..- .|+ .
T Consensus 152 ~~d~IH~IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~ 231 (453)
T PRK14039 152 DQEPIHFVFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGST 231 (453)
T ss_pred CCCCceEEEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCccc
Confidence 111 0112233333 2344555666666665555554322 2 2233458999999999642 111 1
Q ss_pred -HH---HHHHHHHHHH--hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 294 -IR---TITKACEVAH--RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 294 -~~---~i~~ll~~Ak--~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
.+ ...+.++..+ ..+++|-|...+....+-....+..+++++|.+=+|
T Consensus 232 ~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmN 285 (453)
T PRK14039 232 YREKLEDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMN 285 (453)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCC
Confidence 12 2233344332 346899999887543344456677889999987544
No 52
>PRK07105 pyridoxamine kinase; Validated
Probab=92.23 E-value=0.23 Score=47.21 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=42.8
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc----h---hhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT----C---IERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~----~---~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..+.|++ ||... +...+.+.++++.+++.++++++||.... + .+...+.++++++++|++++|.
T Consensus 75 ~~~aik~-G~l~~-~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~ 145 (284)
T PRK07105 75 KFDAIYS-GYLGS-PRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNL 145 (284)
T ss_pred ccCEEEE-CcCCC-HHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCH
Confidence 6788886 66432 22344555556655667899999998531 1 1223466788999999999985
No 53
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=91.07 E-value=2.6 Score=43.30 Aligned_cols=157 Identities=12% Similarity=0.045 Sum_probs=83.4
Q ss_pred eEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCc---------ceee-eCCCCceEE
Q 019265 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAF---------CSEP-IKDGTTGTV 243 (343)
Q Consensus 174 ~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~---------~~v~-~~~~~Tg~~ 243 (343)
...+.||.|..+|..+|++|.. +|.+.+.+... ...+.+...+|-. +.+. +-+-+.|..
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~-------~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~ 169 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDL-------KVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGES 169 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCc-------eEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCE
Confidence 4589999999999999999983 56666655433 2223332212111 1111 001122211
Q ss_pred -EEEECCCCCeEEEEecCCCCCCCCchhhhhccC-CceEEEEcCcCC-CC-CchHHHHHHHHHHHH------hCCCEEEE
Q 019265 244 -IVLTTPDAQRAMLAYQGTSSTINYDPCLVNLIS-KTNIFIVEGYLF-EL-PDTIRTITKACEVAH------RSGALVAV 313 (343)
Q Consensus 244 -iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~-~adiv~isG~~l-~~-p~s~~~i~~ll~~Ak------~~G~~V~f 313 (343)
.-++.|...|-++...-.+.....+++...+.+ ++|.++++||.. .. +.......+.+++++ +..++|-|
T Consensus 170 ~~~~~aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~ 249 (445)
T cd01938 170 WGDFVAPRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHL 249 (445)
T ss_pred ecceEcCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEE
Confidence 123345556666655544442223333333333 499999999964 11 111223333333333 23488888
Q ss_pred ECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 314 TASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 314 D~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
.+.+....+-..+.+..+++++|-+=+|
T Consensus 250 E~As~~d~~l~~~i~~~ilp~VDSlGmN 277 (445)
T cd01938 250 ELASTVDEELREEILHEVVPYVDSLGLN 277 (445)
T ss_pred EecccccHHHHHHHHHHhcccccccccC
Confidence 8877433333456677888999876443
No 54
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=90.64 E-value=0.48 Score=44.01 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhC--CCEEEEECCCc----ch--hhhcHHHHHHhcc-cCcEEEeec
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRS--GALVAVTASDV----TC--IERHYDDFWYEYY-MVLIVVLEF 342 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~--G~~V~fD~s~~----~~--~~~~~e~l~elL~-~vDIlf~~~ 342 (343)
...+++ +.||... ....+.+.++++.++++ ++++++||... .+ .+...+.+.+++. ++|++++|.
T Consensus 71 ~~~~~v-~~G~l~~-~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~ 144 (254)
T cd01173 71 LEYDAV-LTGYLGS-AEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQ 144 (254)
T ss_pred ccCCEE-EEecCCC-HHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcH
Confidence 466777 5676422 23467888999999887 89999999631 11 2334567777777 999999985
No 55
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=90.34 E-value=0.51 Score=44.87 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=44.8
Q ss_pred ccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCC--CEEEEECCCcc-----hh-hhcHHHHH-HhcccCcEEEeec
Q 019265 274 LISKTNIFIVEGYLFELPDTIRTITKACEVAHRSG--ALVAVTASDVT-----CI-ERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 274 ~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G--~~V~fD~s~~~-----~~-~~~~e~l~-elL~~vDIlf~~~ 342 (343)
.+.+.+++ ++||... +...+.+.++++.+++.+ +.+++||.... +. +...+.++ ++++++|++++|.
T Consensus 71 ~~~~~d~v-~~G~l~~-~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~ 146 (286)
T TIGR00687 71 KLNQCDAV-LSGYLGS-AEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQ 146 (286)
T ss_pred ccccCCEE-EECCCCC-HHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCH
Confidence 34588886 6677432 224568888899888765 77889995321 11 23345554 5889999999985
No 56
>PRK12412 pyridoxal kinase; Reviewed
Probab=89.81 E-value=1.7 Score=41.10 Aligned_cols=124 Identities=23% Similarity=0.140 Sum_probs=70.4
Q ss_pred EEEEEcCCChHHHH-HHHHH---HhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccC--Cc
Q 019265 205 AMTGSVGSDPLGGF-YRAKL---RRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLIS--KT 278 (343)
Q Consensus 205 ~lig~VG~D~~G~~-I~~~L---~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~--~a 278 (343)
..++.-|.|+.|-. +...+ +..|+.. .+..++++..++.+......++.....+.. + ...++. ..
T Consensus 3 ~vl~iag~D~sggaGi~aD~~t~~~lg~~~-------~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~-q-~~~l~~d~~~ 73 (268)
T PRK12412 3 KALTIAGSDTSGGAGIQADLKTFQELGVYG-------MTSLTTIVTMDPHNGWAHNVFPIPASTLKP-Q-LETTIEGVGV 73 (268)
T ss_pred eEEEEEeeCCCchHHHHHHHHHHHHcCCee-------ceeeeEEEeEcCCCCcEEEEEeCCHHHHHH-H-HHHHHhCCCC
Confidence 34677788877743 55544 4555443 234445555565443333344431111111 1 122333 37
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCE-EEEECCCcc------hhhhcHHH-HHHhcccCcEEEeec
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGAL-VAVTASDVT------CIERHYDD-FWYEYYMVLIVVLEF 342 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~-V~fD~s~~~------~~~~~~e~-l~elL~~vDIlf~~~ 342 (343)
+++.+ ||.. +.+.+..+++.+++.+.+ +++||.... ..+...+. .+++++++|++++|.
T Consensus 74 ~~iki-G~l~----~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~ 140 (268)
T PRK12412 74 DALKT-GMLG----SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNL 140 (268)
T ss_pred CEEEE-CCCC----CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCH
Confidence 88888 4431 367888888889888876 999997521 11112233 446889999999985
No 57
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=89.73 E-value=4.4 Score=41.62 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=83.7
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCCCCce-EEEEEcCCChHHHHHHHHHHhC-CCCcce---------------------
Q 019265 176 AAAGGSLSNSLVALARLGGKPIGGPALNV-AMTGSVGSDPLGGFYRAKLRRA-NVAFCS--------------------- 232 (343)
Q Consensus 176 ~~~GGsa~NvA~aLArLG~~~~~~~~~~v-~lig~VG~D~~G~~I~~~L~~~-GVd~~~--------------------- 232 (343)
.+.||.|..+|..++++|.+ .+ .+++.++ +..++.|.+. +|-.-.
T Consensus 86 ~rmGGqAgimAn~la~lg~~-------~vI~~~~~ls-----~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~ 153 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLK-------KVIAYTPFLS-----KRQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPS 153 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCc-------eEEEeCCCCC-----HHHHHHhCCcCceeeccccCCceeeccchhccCCCCCC
Confidence 57999999999999999983 32 3444444 3333444442 111100
Q ss_pred -ee-eCCCCceEEE-----EEECCCCCeEEEEecCCCCCCCCc----hhhhhccCCceEEEEcCcCCCC---Cc------
Q 019265 233 -EP-IKDGTTGTVI-----VLTTPDAQRAMLAYQGTSSTINYD----PCLVNLISKTNIFIVEGYLFEL---PD------ 292 (343)
Q Consensus 233 -v~-~~~~~Tg~~i-----Vlid~dGeRt~i~~~Ga~~~l~~~----di~~~~i~~adiv~isG~~l~~---p~------ 292 (343)
+. +-+-+.|..+ -++.|...|-++.++-.+..+... +...+....+|.++++||..-. |+
T Consensus 154 ~IH~I~Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~ 233 (446)
T TIGR02045 154 KVNRIFEFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKY 233 (446)
T ss_pred ceEEEEEeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhH
Confidence 00 0011222222 233344456556555444444222 1233445679999999996311 11
Q ss_pred hHHHHHHHHHHHHh-CCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 293 TIRTITKACEVAHR-SGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 293 s~~~i~~ll~~Ak~-~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
-.+...+.++..++ .+++|-|...+....+-....+..+++++|.+=+|
T Consensus 234 ~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMN 283 (446)
T TIGR02045 234 YLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMD 283 (446)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCC
Confidence 12344444555433 68999999887433333445666888999877544
No 58
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=89.61 E-value=0.77 Score=47.05 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=75.7
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCccee--------e----eC-CCCceE
Q 019265 176 AAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSE--------P----IK-DGTTGT 242 (343)
Q Consensus 176 ~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v--------~----~~-~~~Tg~ 242 (343)
.+.||.|.-+|..||.++.. +|.+.+.++. +.+++.| ..+|-.=.+ . .. +.+.-.
T Consensus 92 ~r~GGnA~imAn~la~l~~~-------~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~i 159 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGC-------PVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDI 159 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-S-------EEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----E
T ss_pred cccCchHHHHHHHHHhCCCC-------EEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccce
Confidence 35999999999999977762 4555554665 3444555 222211000 0 00 001112
Q ss_pred EEE-----------EECCCCCeEEEEecCCCCCCCCch-h---hhhccCCceEEEEcCcCCCC-----CchH----HHHH
Q 019265 243 VIV-----------LTTPDAQRAMLAYQGTSSTINYDP-C---LVNLISKTNIFIVEGYLFEL-----PDTI----RTIT 298 (343)
Q Consensus 243 ~iV-----------lid~dGeRt~i~~~Ga~~~l~~~d-i---~~~~i~~adiv~isG~~l~~-----p~s~----~~i~ 298 (343)
-+| ++.|...|-++.+.-.+..+...+ + ..+...++|.++++||..-. .... +.+.
T Consensus 160 H~IlEy~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~ 239 (444)
T PF04587_consen 160 HLILEYKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLK 239 (444)
T ss_dssp EEEEEE-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHH
T ss_pred EEEEEcCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHH
Confidence 222 223445576777766666665432 2 22334569999999996411 1112 2334
Q ss_pred HHHHHHH-hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 299 KACEVAH-RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 299 ~ll~~Ak-~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
+.++..+ ..+++|-|.+.+....+-.+..+..+++++|.+=+|
T Consensus 240 ~~i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmN 283 (444)
T PF04587_consen 240 EQIKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMN 283 (444)
T ss_dssp HHHHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHHHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccC
Confidence 4444455 689999999987543343456677899999998665
No 59
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=88.62 E-value=3.6 Score=42.39 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=82.4
Q ss_pred EEecCChHHHHHHHHHHhCCCCCCCCCCc-eEEEEEcCCChHHHHHHHHHHh-CCCCcc--------------------e
Q 019265 175 KAAAGGSLSNSLVALARLGGKPIGGPALN-VAMTGSVGSDPLGGFYRAKLRR-ANVAFC--------------------S 232 (343)
Q Consensus 175 ~~~~GGsa~NvA~aLArLG~~~~~~~~~~-v~lig~VG~D~~G~~I~~~L~~-~GVd~~--------------------~ 232 (343)
..+.||.|..+|..+|++|.+ + +.+++.++. ..++.|.. .+|-.- .
T Consensus 98 ~~rmGGqAgimAn~la~lg~~-------~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~ 165 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLK-------KVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDP 165 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCc-------eEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCC
Confidence 458999999999999999993 3 244444543 23344422 111100 0
Q ss_pred --ee-eCCCCceEEE-----EEECCCCCeEEEEecCCCCCCCCchhh----hhccCCceEEEEcCcCCC---CCc--h--
Q 019265 233 --EP-IKDGTTGTVI-----VLTTPDAQRAMLAYQGTSSTINYDPCL----VNLISKTNIFIVEGYLFE---LPD--T-- 293 (343)
Q Consensus 233 --v~-~~~~~Tg~~i-----Vlid~dGeRt~i~~~Ga~~~l~~~di~----~~~i~~adiv~isG~~l~---~p~--s-- 293 (343)
+. +-+-+.|..+ -++.|...|-++.++-.+..+...+.. .+.-.++|.++++||..- .|+ .
T Consensus 166 ~~IH~I~Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~ 245 (463)
T PRK03979 166 LKINRIFEFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAE 245 (463)
T ss_pred cceEEEEEeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHH
Confidence 00 0011223332 223344456666655555554432222 222346999999999631 111 1
Q ss_pred --HHHHHHHHHHH--HhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 294 --IRTITKACEVA--HRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 294 --~~~i~~ll~~A--k~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
.+.+.+.++.. +..+++|-|...+....+-....+..+++++|.+=+|
T Consensus 246 ~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmN 297 (463)
T PRK03979 246 YYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMD 297 (463)
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCC
Confidence 22333343334 3457899999887433333445666788999876444
No 60
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=88.00 E-value=0.91 Score=42.16 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=68.5
Q ss_pred ceEEEEEcCCChHHH-HHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEE
Q 019265 203 NVAMTGSVGSDPLGG-FYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 203 ~v~lig~VG~D~~G~-~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv 281 (343)
+...++.-|.|+.|- -+...++-..- .......+.+++...+..|.. +.... ...+ .+.+ +.+...++.
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~----~~~~~~~~~t~~t~~~~~G~~--v~~~~-~~~l-~~~l--~~l~~~~~~ 72 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTR----NGLHGFVAVTCLTAMTEKGFE--VFPVD-KEIF-QQQL--DSLKDVPFS 72 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHH----cCCccCeeeEEEecccCCceE--EEECC-HHHH-HHHH--HHhhCCCCC
Confidence 346688889897764 47777664211 112234455566556656632 22111 1111 1111 112344444
Q ss_pred EEc-CcCCCCCchHHHHHHHHHHHH-hCCCEEEEECCCcch------hhhcHHHHHHhcccCcEEEeec
Q 019265 282 IVE-GYLFELPDTIRTITKACEVAH-RSGALVAVTASDVTC------IERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 282 ~is-G~~l~~p~s~~~i~~ll~~Ak-~~G~~V~fD~s~~~~------~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.+. |+. | +.+....+++.++ +.+++++|||..... .+...+.+.++++++|++++|.
T Consensus 73 ~i~~G~l---~-~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~ 137 (253)
T PRK12413 73 AIKIGLL---P-NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNL 137 (253)
T ss_pred EEEECCc---C-CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCH
Confidence 443 543 2 2455666666665 468999999975421 1223455667899999999985
No 61
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=86.80 E-value=1.1 Score=41.96 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCCCCCC-CchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhccc--Cc
Q 019265 260 GTSSTIN-YDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYM--VL 336 (343)
Q Consensus 260 Ga~~~l~-~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~--vD 336 (343)
|++..++ ..+...+.+++++++++.-..+ .+...+.+..+++.+++.++++++||..........+.+.+++.. +|
T Consensus 31 g~~~~~~~~~e~~~~~l~~~d~vvi~~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ 109 (242)
T cd01170 31 GASPIMSDAPEEVEELAKIAGALVINIGTL-TSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPT 109 (242)
T ss_pred CCchhhcCCHHHHHHHHHHcCcEEEeCCCC-ChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCe
Confidence 4443343 2234556678899999953222 122346677777788899999999997432111112344566665 99
Q ss_pred EEEeec
Q 019265 337 IVVLEF 342 (343)
Q Consensus 337 Ilf~~~ 342 (343)
|+.+|.
T Consensus 110 ilTPN~ 115 (242)
T cd01170 110 VIRGNA 115 (242)
T ss_pred EEcCCH
Confidence 999885
No 62
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=86.50 E-value=1.3 Score=42.26 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=40.6
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHh--CCCEEEEECCCcc-----h-hhhcHHHHH-HhcccCcEEEeec
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHR--SGALVAVTASDVT-----C-IERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~--~G~~V~fD~s~~~-----~-~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
+.+.+.+++ ||.. .+...+.+.++++..+. .+.++++||.... + .+...+.++ .+++++|++++|.
T Consensus 86 l~~~d~i~~-G~l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~ 160 (281)
T PRK08176 86 LRQLRAVTT-GYMG-SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNI 160 (281)
T ss_pred cccCCEEEE-CCCC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCH
Confidence 447898888 5532 22223455555555443 4788999998321 1 122334565 5889999999985
No 63
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=84.74 E-value=0.29 Score=39.61 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccc
Q 019265 81 GGDLGRDNYEEDDE 94 (343)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (343)
+-|=-.|.+||+++
T Consensus 9 ~~dse~dsdEdeee 22 (101)
T PF09026_consen 9 EEDSESDSDEDEEE 22 (101)
T ss_dssp --------------
T ss_pred Ccccccccccchhh
Confidence 33444444444333
No 64
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=83.77 E-value=3.1 Score=38.04 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=41.9
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhC-CCEEEEECCCcc-----h-hhhcHHHH-HHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRS-GALVAVTASDVT-----C-IERHYDDF-WYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~-G~~V~fD~s~~~-----~-~~~~~e~l-~elL~~vDIlf~~~ 342 (343)
+.+++.+ ||.. +.+.+..+.+.+++. ++++++||.... . .+...+.+ ..+++++|++++|.
T Consensus 68 ~~~~i~~-G~l~----~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~ 136 (242)
T cd01169 68 PVDAIKI-GMLG----SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNL 136 (242)
T ss_pred CCCEEEE-CCCC----CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCH
Confidence 6788888 6642 367778888888876 899999997531 1 11122333 45679999999985
No 65
>PTZ00344 pyridoxal kinase; Provisional
Probab=83.22 E-value=2.3 Score=40.80 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCC--CEEEEECCCcc----h-hhhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSG--ALVAVTASDVT----C-IERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G--~~V~fD~s~~~----~-~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.++++||... +...+.+.++++.+++.+ +++++||.... + .+...+.++++++++||+++|.
T Consensus 79 ~~v~sG~l~~-~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~ 147 (296)
T PTZ00344 79 TYVLTGYINS-ADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQ 147 (296)
T ss_pred CEEEECCCCC-HHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCH
Confidence 5566677432 222344445555555555 58999976421 2 2335567788999999999985
No 66
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=83.05 E-value=3.1 Score=38.88 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=41.5
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCC-EEEEECCCcc------hhhhcHHHHH-HhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGA-LVAVTASDVT------CIERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~-~V~fD~s~~~------~~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
..+.+.+ ||.. +.+.+..+++.+++.+. ++++||.... +.+...+.++ ++++++|++++|.
T Consensus 73 ~~~ai~i-G~l~----~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~ 141 (266)
T PRK06427 73 RIDAVKI-GMLA----SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNL 141 (266)
T ss_pred CCCEEEE-CCcC----CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCH
Confidence 5677887 4532 36778888888888875 7999997421 1112223444 5899999999985
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=81.88 E-value=4.9 Score=37.48 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=37.1
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc------hhhhcHHHHHH-hcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT------CIERHYDDFWY-EYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~------~~~~~~e~l~e-lL~~vDIlf~~~ 342 (343)
..+.+.+ ||.. +.+.+..+.+..++.+.++++||.... ..+...+.+++ +++++||+.||.
T Consensus 60 ~~~aiki-G~l~----~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~ 127 (246)
T PF08543_consen 60 KFDAIKI-GYLG----SAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNL 127 (246)
T ss_dssp C-SEEEE--S-S----SHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BH
T ss_pred cccEEEE-cccC----CchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCH
Confidence 6788888 5532 356667777777778889999997531 12234556665 999999999995
No 68
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.70 E-value=4 Score=37.68 Aligned_cols=58 Identities=9% Similarity=-0.026 Sum_probs=42.9
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.-|.++|--..+- .+.+.++++.+|+.|+.+++|.+... ..+.+.++++++|.+.+.+
T Consensus 40 gGVt~SGGEPllq--~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~Di 97 (213)
T PRK10076 40 GGVTLSGGEVLMQ--AEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDL 97 (213)
T ss_pred CEEEEeCchHHcC--HHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEee
Confidence 4566665432221 57789999999999999999998742 2356788899999988754
No 69
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.28 E-value=2 Score=40.82 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=13.1
Q ss_pred ccCCccchhhhhhhhhcccCcce
Q 019265 24 HHHPHRTKLQALVFRKFSLGKER 46 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~ 46 (343)
-|--.-||--.+--|++..|...
T Consensus 216 g~et~eTkdLSmStR~hkyGRQ~ 238 (314)
T PF06524_consen 216 GYETQETKDLSMSTRSHKYGRQG 238 (314)
T ss_pred CCcccccccceeeeecchhcccc
Confidence 33444566556666776666543
No 70
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.46 E-value=0.73 Score=50.52 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=7.6
Q ss_pred CCCccccccccCCCCCC
Q 019265 86 RDNYEEDDEAGDESEAD 102 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~~~ 102 (343)
|+|++|.||.+++++++
T Consensus 1401 r~~~dd~DeeeD~e~Ed 1417 (1516)
T KOG1832|consen 1401 RPTDDDSDEEEDDETED 1417 (1516)
T ss_pred CCCccccCccccchhhc
Confidence 34444444444444333
No 71
>PRK05756 pyridoxamine kinase; Validated
Probab=79.79 E-value=3.5 Score=39.12 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=43.3
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCC--CEEEEECCCcc-----hh-hhcHHHHH-HhcccCcEEEeec
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSG--ALVAVTASDVT-----CI-ERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G--~~V~fD~s~~~-----~~-~~~~e~l~-elL~~vDIlf~~~ 342 (343)
+...+++ ++||... ....+.+.++++.+++.+ +.+++||.... +. +...+.+. ++++++|++++|.
T Consensus 72 l~~~~~v-~~G~l~~-~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~ 146 (286)
T PRK05756 72 LGECDAV-LSGYLGS-AEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNL 146 (286)
T ss_pred cccCCEE-EECCCCC-HHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCH
Confidence 4567855 6687432 224678888888888766 56889987432 11 22233344 4899999999985
No 72
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=79.38 E-value=4.9 Score=37.47 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=41.7
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCC-EEEEECCCcc------hhhhcHHHH-HHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGA-LVAVTASDVT------CIERHYDDF-WYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~-~V~fD~s~~~------~~~~~~e~l-~elL~~vDIlf~~~ 342 (343)
+.+.+.++ +.. +.+.+..+++.+++++. ++++||.... ..+...+.+ +++++++|++++|.
T Consensus 67 ~~~aikiG-~l~----~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~ 135 (254)
T TIGR00097 67 PVDAAKTG-MLA----SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNL 135 (254)
T ss_pred CCCEEEEC-CcC----CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCH
Confidence 46778874 421 36788888999998888 6999987421 111122233 46889999999985
No 73
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=77.12 E-value=3.5 Score=42.15 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCCc------chhhhcHHH-HHHhcccCcEEEeec
Q 019265 294 IRTITKACEVAHRSGALVAVTASDV------TCIERHYDD-FWYEYYMVLIVVLEF 342 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~~------~~~~~~~e~-l~elL~~vDIlf~~~ 342 (343)
.+.+..+++.+++.|++++|||... .+.+...+. ..++++++|++++|.
T Consensus 83 ~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~ 138 (448)
T PRK08573 83 REIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNR 138 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCH
Confidence 6888999999999999999999642 111112223 367889999999985
No 74
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=75.40 E-value=5.8 Score=37.55 Aligned_cols=82 Identities=10% Similarity=0.040 Sum_probs=46.6
Q ss_pred CCCCCCCCc-hhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcc--cCc
Q 019265 260 GTSSTINYD-PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYY--MVL 336 (343)
Q Consensus 260 Ga~~~l~~~-di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~--~vD 336 (343)
|+.+-+... +...+.++.++.+++. .-...+...+.+..+++.+++.++++++||..........+...++++ +++
T Consensus 36 g~sp~m~~~~~e~~~~~~~~~alvi~-~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~ 114 (263)
T PRK09355 36 GASPAMAHAPEEAEEMAKIAGALVIN-IGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPA 114 (263)
T ss_pred CCCcccCCCHHHHHHHHHhcCceEEe-CCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCc
Confidence 555554432 2344556778888884 222122123346666777888999999999754222212233344444 678
Q ss_pred EEEeec
Q 019265 337 IVVLEF 342 (343)
Q Consensus 337 Ilf~~~ 342 (343)
|+-+|.
T Consensus 115 vItPN~ 120 (263)
T PRK09355 115 VIRGNA 120 (263)
T ss_pred EecCCH
Confidence 888875
No 75
>PLN02978 pyridoxal kinase
Probab=75.22 E-value=5 Score=38.86 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=41.5
Q ss_pred ceEEEEcCcCCCCCchHHHHHHHHHHHHh--CCCEEEEECCCcc----h-hhhcHHHHH-HhcccCcEEEeec
Q 019265 278 TNIFIVEGYLFELPDTIRTITKACEVAHR--SGALVAVTASDVT----C-IERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 278 adiv~isG~~l~~p~s~~~i~~ll~~Ak~--~G~~V~fD~s~~~----~-~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
.+.+.+ ||.. .+...+.+.++++.+++ .++++++||.... + .+...+.++ .+++++||+++|.
T Consensus 87 ~~ai~~-G~l~-s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~ 157 (308)
T PLN02978 87 YTHLLT-GYIG-SVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQ 157 (308)
T ss_pred cCEEEe-cccC-CHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCH
Confidence 566655 5532 22345777888888876 4578999998532 1 122344565 5999999999985
No 76
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=73.18 E-value=55 Score=33.81 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=55.0
Q ss_pred EECCCCCeEEEEecCCCCCCCCc-hh---hhhccCCceEEEEcCcCCCCCch----HHHHHHHHHHHHhCCCEEEEECCC
Q 019265 246 LTTPDAQRAMLAYQGTSSTINYD-PC---LVNLISKTNIFIVEGYLFELPDT----IRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 246 lid~dGeRt~i~~~Ga~~~l~~~-di---~~~~i~~adiv~isG~~l~~p~s----~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+..|...|-++.+.-.+..+... ++ ..+...++|.++++||..-.... .+.+.+.++..+..+++|-|.+.+
T Consensus 189 ~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs 268 (453)
T PRK14038 189 FEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAF 268 (453)
T ss_pred eEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeec
Confidence 34455567666666555555332 22 23455689999999996421111 223344444444568889998885
Q ss_pred cchhhhcHHHHHHhcccCcEEEee
Q 019265 318 VTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 318 ~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
.... ..+..+.++++++|-+=+|
T Consensus 269 ~~d~-~~r~~i~~ilp~vDSlGmN 291 (453)
T PRK14038 269 TPDE-TVREEILGLLGKFYSVGLN 291 (453)
T ss_pred cchH-HHHHHHHhhCccccccccC
Confidence 4222 2345555788888876443
No 77
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.33 E-value=39 Score=34.52 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=62.8
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHH---HHHHHHHHhCCCCcceeeeCCCCceEEEEEECC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLG---GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP 249 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G---~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~ 249 (343)
......+|.+++.+..++.++- .+-.++ ..+.++ ..+...+++.|+++.++..
T Consensus 78 ~av~~~SG~aAi~~al~all~~-------GD~VI~---~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~-------------- 133 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSS-------GDHLLC---SSTVYGGTFNLFGVSLRKLGIDVTFFNP-------------- 133 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCC-------CCEEEE---CCCchHHHHHHHHHHHHHCCCEEEEECC--------------
Confidence 3456889999988777665543 133333 334555 4455567888987655410
Q ss_pred CCCeEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 250 DAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 250 dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.++++.+...+-.+.+.|++... ..|. ..-.+.++.+.|+++|+.++.|-..
T Consensus 134 --------------~~d~~~l~~~I~~~Tk~I~~e~p--gnP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 134 --------------NLTADEIVALANDKTKLVYAESL--GNPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred --------------CCCHHHHHHhCCcCCeEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 12223332222345677887643 2221 0124788899999999999999864
No 78
>PRK12616 pyridoxal kinase; Reviewed
Probab=68.83 E-value=12 Score=35.26 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCC-CEEEEECCCcch------hhhcHHHHHH-hcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSG-ALVAVTASDVTC------IERHYDDFWY-EYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G-~~V~fD~s~~~~------~~~~~e~l~e-lL~~vDIlf~~~ 342 (343)
..+.+.+ ||.. +.+.+..+.+.+++.+ .++++||..... .+...+.+++ +++++|++++|.
T Consensus 74 ~~~aiki-G~l~----s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~ 142 (270)
T PRK12616 74 GVDAMKT-GMLP----TVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNL 142 (270)
T ss_pred CCCEEEE-CCCC----CHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCH
Confidence 4677777 5532 3678888888888876 469999986311 1122344444 888999999985
No 79
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=68.65 E-value=9.5 Score=35.78 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=47.9
Q ss_pred CCCCCCCCc-hhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcc--cCc
Q 019265 260 GTSSTINYD-PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYY--MVL 336 (343)
Q Consensus 260 Ga~~~l~~~-di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~--~vD 336 (343)
|+.+.+... +...++++.++.+.+.--.+. +...+.+..+++.++++++++++||..........+...++++ +++
T Consensus 31 g~sp~m~~~~~e~~~~~~~~~al~ik~G~l~-~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~ 109 (249)
T TIGR00694 31 GASPVMSEAEEEVAELAKIAGALVINIGTLD-KESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFA 109 (249)
T ss_pred CCChhhcCCHHHHHHHHHHcCceEEeCCCCC-HHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCc
Confidence 555555432 233455667788887422221 1124566777788888899999999754222211233355666 468
Q ss_pred EEEeec
Q 019265 337 IVVLEF 342 (343)
Q Consensus 337 Ilf~~~ 342 (343)
|+-+|.
T Consensus 110 vITpN~ 115 (249)
T TIGR00694 110 AIRGNA 115 (249)
T ss_pred eeCCCH
Confidence 887764
No 80
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=66.85 E-value=9.5 Score=35.36 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=41.2
Q ss_pred hccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 273 NLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 273 ~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..+.+.++++++.- ++. .+.+..+++.++++++++++|+............ .+++..+|+.||.
T Consensus 73 ~~~~~~d~v~ig~g---l~~-~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~--~~~~~~~iltPn~ 136 (254)
T cd01171 73 ELLERADAVVIGPG---LGR-DEEAAEILEKALAKDKPLVLDADALNLLADEPSL--IKRYGPVVLTPHP 136 (254)
T ss_pred hhhccCCEEEEecC---CCC-CHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhh--hccCCCEEECCCH
Confidence 34567899999642 221 2678888899999999999998753222111111 2456778888774
No 81
>PRK08114 cystathionine beta-lyase; Provisional
Probab=64.98 E-value=52 Score=33.26 Aligned_cols=104 Identities=9% Similarity=-0.006 Sum_probs=60.1
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHH---HHHHHHHHhCCCCcceeeeCCCCceEEEEEECC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLG---GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP 249 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G---~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~ 249 (343)
.....+.|.++..+..++-+.. .+..+++ ++.+| ..+.+.|++.||.+.++... +
T Consensus 79 ~a~~~~SGmaAi~~~~~~ll~~-------GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~-----------d- 136 (395)
T PRK08114 79 GCALYPCGAAAVANAILAFVEQ-------GDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWFDPL-----------I- 136 (395)
T ss_pred eEEEEhHHHHHHHHHHHHHcCC-------CCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEECCC-----------C-
Confidence 4456778888888777766543 1344444 33444 44456688888876654310 1
Q ss_pred CCCeEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhC--CCEEEEECCC
Q 019265 250 DAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPD-TIRTITKACEVAHRS--GALVAVTASD 317 (343)
Q Consensus 250 dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~--G~~V~fD~s~ 317 (343)
.+.+...+-.+.++|+++.-. .|. ....+.++.+.|+++ |+.+++|-..
T Consensus 137 -----------------~~~l~~~l~~~TrlV~~Etps--Np~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 137 -----------------GADIAKLIQPNTKVVFLESPG--SITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred -----------------HHHHHHhcCCCceEEEEECCC--CCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 111111111246788887532 121 134567788888887 4999999875
No 82
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=60.24 E-value=21 Score=34.18 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=47.6
Q ss_pred CCCCCCCCc-hhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccC
Q 019265 260 GTSSTINYD-PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMV 335 (343)
Q Consensus 260 Ga~~~l~~~-di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~v 335 (343)
|+++.+... +..+++.+-++.+++.=-.+. ....+.+..+.+.|.+.|+|++|||....-.+.-++...++|.+.
T Consensus 37 GaSP~Ma~~~eE~~e~~kia~AL~INIGTL~-~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~ 112 (265)
T COG2145 37 GASPVMADAPEEVEEFAKIADALLINIGTLS-AERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEV 112 (265)
T ss_pred CCCchhccCHHHHHHHHHhccceEEeeccCC-hHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhc
Confidence 566555432 234455566666776522232 224688899999999999999999986532222345566777665
No 83
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=59.77 E-value=33 Score=32.51 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=40.0
Q ss_pred hhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhc--ccCcEEEee
Q 019265 272 VNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEY--YMVLIVVLE 341 (343)
Q Consensus 272 ~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL--~~vDIlf~~ 341 (343)
.+..+.++.+++.=-.+. +...+.+....+.|.+.+++++|||....-.+.-.+...++| .+.+|+--|
T Consensus 44 ~e~~~~a~al~iNiGTl~-~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN 114 (246)
T PF02110_consen 44 EEFASIADALVINIGTLT-DERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGN 114 (246)
T ss_dssp HHHHHCTSEEEEESTTSS-HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEE
T ss_pred HHHHHHcCEEEEECCCCC-HhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 344556777888621111 123578888999999999999999987542233345666777 345555444
No 84
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=59.71 E-value=35 Score=32.34 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=43.8
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..+-|.++|--..+- .+.+.++++.||+.|+.+++|.+... ..+.+.++++++|.+.+.+
T Consensus 83 ~~~gvt~SGGEP~~q--~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~~~D~v~~Dl 142 (260)
T COG1180 83 SGGGVTFSGGEPTLQ--AEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLPLLDAVLLDL 142 (260)
T ss_pred CCCEEEEECCcchhh--HHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHhhcCeEEEee
Confidence 567777776532222 68899999999999999999998742 2344467788888887643
No 85
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=58.84 E-value=34 Score=29.62 Aligned_cols=54 Identities=6% Similarity=-0.108 Sum_probs=40.1
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
+.|.++|--+ ..+.+.++++.+|+.|..+.++.+.. ..+...++++++|+++..
T Consensus 63 ~gVt~SGGEl----~~~~l~~ll~~lk~~Gl~i~l~Tg~~-----~~~~~~~il~~iD~l~~g 116 (147)
T TIGR02826 63 SCVLFLGGEW----NREALLSLLKIFKEKGLKTCLYTGLE-----PKDIPLELVQHLDYLKTG 116 (147)
T ss_pred CEEEEechhc----CHHHHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHHhCCEEEEC
Confidence 4566666442 25788999999999999999998742 223566788999999875
No 86
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=58.72 E-value=84 Score=31.30 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=55.4
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQ 252 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGe 252 (343)
......||.+++.+...+.+.- .+..++....-...-..+.+.++..|+.+.++...
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~-------Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---------------- 134 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQA-------GDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT---------------- 134 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCC-------CCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC----------------
Confidence 3456788888877665554422 13344433221122233445667777766554321
Q ss_pred eEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 253 RAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 253 Rt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+++++...+-.+.++|+++.- ..| .....+.++.+.|+++|+.+++|-..
T Consensus 135 -------------d~~~l~~~i~~~tklV~ie~p--~NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 135 -------------DLDAWRAAVRPNTKLFFLETP--SNPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred -------------CHHHHHHhcCcCCeEEEEECC--CCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 111221111134667776421 111 11223577888889999999999864
No 87
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=58.43 E-value=43 Score=26.96 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=40.0
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCC---CEEEEECCCcchhhhcHHHHHHhcccCcEEE
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSG---ALVAVTASDVTCIERHYDDFWYEYYMVLIVV 339 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G---~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf 339 (343)
..+||++++..-.+.. ...+.+...+..+++.+ .+|++--- +.+...+.+.+..+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~-~Ae~k~~~~i~~l~~~~~~~~~ivv~GC---~aq~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRE-SAEQKSRNRIRKLKKLKKPGAKIVVTGC---MAQRYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCc-HHHHHHHHHHHHHHHhcCCCCEEEEEeC---ccccChHHHHhhCCCeEEEe
Confidence 3678999987655432 23445555555555544 66776543 23556788999999999986
No 88
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=58.24 E-value=4.9 Score=40.98 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 019265 294 IRTITKACEVAH 305 (343)
Q Consensus 294 ~~~i~~ll~~Ak 305 (343)
.++++..++.-+
T Consensus 207 E~AY~Scle~Rr 218 (458)
T PF10446_consen 207 EAAYISCLEARR 218 (458)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 89
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=57.74 E-value=77 Score=31.59 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred CceEEEEEcCCChHHHHHHHHHH-hCCCCcceee--eCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCc
Q 019265 202 LNVAMTGSVGSDPLGGFYRAKLR-RANVAFCSEP--IKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKT 278 (343)
Q Consensus 202 ~~v~lig~VG~D~~G~~I~~~L~-~~GVd~~~v~--~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~a 278 (343)
.+++++|+.|- .|+.+.+.|. ...+....+. ......|..+-+ .+. .+..+++....+.+.
T Consensus 6 ~~VaIvGATG~--vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~------------~~~--~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 6 YHVAVVGATGA--VGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF------------KGR--EIIIQEAKINSFEGV 69 (347)
T ss_pred CEEEEEeCCCH--HHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee------------CCc--ceEEEeCCHHHhcCC
Confidence 36777777664 8999999999 4777754332 122223333221 111 111111222234678
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
|+++++. | .+...++...+.+.|+ +++|.+..
T Consensus 70 Divf~a~-----~--~~~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 70 DIAFFSA-----G--GEVSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred CEEEECC-----C--hHHHHHHHHHHHHCCC-EEEECchh
Confidence 9999872 3 4567777888877775 77888863
No 90
>PRK07050 cystathionine beta-lyase; Provisional
Probab=54.94 E-value=2.1e+02 Score=28.57 Aligned_cols=107 Identities=10% Similarity=-0.036 Sum_probs=60.0
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQ 252 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGe 252 (343)
......||.+++.+...+.++- .+..++..-.--..-..+...++..|+.+.++... +.
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~~-------GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-------------~~- 140 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVKA-------GDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-------------IG- 140 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhCC-------CCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-------------CH-
Confidence 4557789999988777666532 14444443222222223334566677766543210 00
Q ss_pred eEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 253 RAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 253 Rt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+++...+-.+.++|+++.-. .| .....+.++.+.|+++|+.+++|-..
T Consensus 141 ---------------~~l~~~i~~~tklV~le~p~--Np~~~~~di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 141 ---------------AGIADLIQPNTRLIWLEAPG--SVTMEVPDVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred ---------------HHHHHhcCCCCeEEEEECCC--CCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence 11111111356777765321 11 13567889999999999999999874
No 91
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=53.84 E-value=1.4e+02 Score=29.73 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=53.9
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeee--CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPI--KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~--~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
+++++|..|. .|+.+.+.|++.......+.. ....-|..++- +.+-......+-.....+++.|+
T Consensus 3 ~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~-----------f~~~~~~v~~~~~~~~~~~~~Di 69 (334)
T COG0136 3 NVAVLGATGA--VGQVLLELLEERHFPFEELVLLASARSAGKKYIE-----------FGGKSIGVPEDAADEFVFSDVDI 69 (334)
T ss_pred EEEEEeccch--HHHHHHHHHHhcCCCcceEEEEecccccCCcccc-----------ccCccccCccccccccccccCCE
Confidence 6788888876 899999999998766654432 12222222111 11100011110012233458999
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
++++. + .+...++..++.+.|+ +++|-++
T Consensus 70 vf~~a-----g--~~~s~~~~p~~~~~G~-~VIdnsS 98 (334)
T COG0136 70 VFFAA-----G--GSVSKEVEPKAAEAGC-VVIDNSS 98 (334)
T ss_pred EEEeC-----c--hHHHHHHHHHHHHcCC-EEEeCCc
Confidence 99973 2 3455788889999995 5566554
No 92
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=53.66 E-value=18 Score=34.63 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhCC-CEEEEECCCc------chhhhcHHHHH-HhcccCcEEEeec
Q 019265 293 TIRTITKACEVAHRSG-ALVAVTASDV------TCIERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 293 s~~~i~~ll~~Ak~~G-~~V~fD~s~~------~~~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
+.+.+..+.+..++++ .++++||... ...+...+.++ +++|+++|+-||.
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl 140 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNL 140 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCH
Confidence 3688888888888988 7899999642 12233444444 8999999999985
No 93
>PRK09028 cystathionine beta-lyase; Provisional
Probab=53.32 E-value=1.6e+02 Score=29.72 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
++.++|+++.- ..|. ....+.++.+.|+++|+.+++|-..
T Consensus 145 ~~TklV~lesp--sNPtg~v~dl~~I~~la~~~g~~lvvD~t~ 185 (394)
T PRK09028 145 PNTKVLFLESP--GSITMEVQDVPTLSRIAHEHDIVVMLDNTW 185 (394)
T ss_pred cCceEEEEECC--CCCCCcHHHHHHHHHHHHHcCCEEEEECCc
Confidence 45788888742 2231 3567899999999999999999764
No 94
>PRK07582 cystathionine gamma-lyase; Validated
Probab=53.32 E-value=95 Score=30.61 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=53.7
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQ 252 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGe 252 (343)
......+|..++.+...+.+.- .+..++..-+--..-..+...+++.|+.+..+...+...
T Consensus 67 ~~v~~~sG~~Ai~~~l~all~~-------Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~------------ 127 (366)
T PRK07582 67 EALVFPSGMAAITAVLRALLRP-------GDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE------------ 127 (366)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-------CCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH------------
Confidence 4446677777666555554432 134444432222233344456777888776654321100
Q ss_pred eEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 253 RAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 253 Rt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
....+.+++++..- ..|. ....+.++.+.|+++|+.+++|-..
T Consensus 128 --------------------~~~~~t~lV~le~p--~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 128 --------------------AALAGADLVLAETP--SNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred --------------------HhccCceEEEEECC--CCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 00123345555421 1121 1234677788888889999999863
No 95
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.94 E-value=1.3e+02 Score=30.61 Aligned_cols=60 Identities=22% Similarity=0.158 Sum_probs=34.3
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.++|++...... ......+.++.+.|+++|+.+++|-....-.. ... +--.+|+++.+.
T Consensus 155 ~tk~V~~e~~~Np-~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p----~~~GaDivv~S~ 214 (437)
T PRK05613 155 NTKAFFGETFANP-QADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRP----LELGADVVVASL 214 (437)
T ss_pred cCeEEEEECCCCC-CCcccCHHHHHHHHHHcCCeEEEECCCccccc-cCh----HHhCCCEEEeec
Confidence 4566766533210 00123467888888999999999987531110 111 112578888764
No 96
>PRK05967 cystathionine beta-lyase; Provisional
Probab=52.48 E-value=2.1e+02 Score=28.80 Aligned_cols=102 Identities=18% Similarity=0.075 Sum_probs=58.9
Q ss_pred EEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHH---HHHHHHHhCCCCcceeeeCCCCceEEEEEECCCC
Q 019265 175 KAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGG---FYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDA 251 (343)
Q Consensus 175 ~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~---~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dG 251 (343)
.....|.++..+..++.+.- .+..++. ++.+|. .+.+.+++.|+.+.++... +.
T Consensus 83 v~~sSG~aAi~~~l~all~~-------GD~Vlv~---~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-------------~~ 139 (395)
T PRK05967 83 ILVPSGLAAVTVPFLGFLSP-------GDHALIV---DSVYYPTRHFCDTMLKRLGVEVEYYDPE-------------IG 139 (395)
T ss_pred EEECcHHHHHHHHHHHhcCC-------CCEEEEc---cCCcHHHHHHHHHHHHhcCeEEEEeCCC-------------CH
Confidence 34555666665555555432 1344444 333443 3456788888876654210 00
Q ss_pred CeEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 252 QRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 252 eRt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.+...+-++.++|+++.-. .| -....+.++.+.|+++|+.+++|-..
T Consensus 140 ----------------e~l~~al~~~TklV~lesPs--NP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 140 ----------------AGIAKLMRPNTKVVHTEAPG--SNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred ----------------HHHHHhcCcCceEEEEECCC--CCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 11222222357888887422 12 13677899999999999999999764
No 97
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=51.77 E-value=1.2e+02 Score=29.86 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred CceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|+++.-. .| .....+.++.+.|+++|+.+++|-..
T Consensus 125 ~~~~v~~e~~~--np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 125 ETKLVYVESPT--NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCeEEEEECCC--CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 56778876432 11 11233678888899999999999864
No 98
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.09 E-value=7.2 Score=43.23 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=8.7
Q ss_pred CCCCC-CCCCccccccccCC
Q 019265 80 GGGDL-GRDNYEEDDEAGDE 98 (343)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~ 98 (343)
|--.+ --||+||+|++..+
T Consensus 1398 GR~r~~~dd~DeeeD~e~Ed 1417 (1516)
T KOG1832|consen 1398 GRRRPTDDDSDEEEDDETED 1417 (1516)
T ss_pred cccCCCccccCccccchhhc
Confidence 44444 45555554444333
No 99
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=49.93 E-value=1.2e+02 Score=29.88 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=52.1
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceee--eCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEP--IKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~--~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
++.++|+.|. .|..+.+.|.+.+.....+. ...... |++ +...+. .+..++.....++++|+
T Consensus 6 ~IaIvGATG~--vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~--l~~~~~--~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATGT--VGEALVQILEERDFPVGTLHLLASSESA----------GHS--VPFAGK--NLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCCH--HHHHHHHHHhhCCCCceEEEEEECcccC----------CCe--eccCCc--ceEEeeCChHHhcCCCE
Confidence 5666666664 79999999997654433322 111112 222 112221 12222221122468899
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
+++. .| ......++..+.+.|+ .++|.+..
T Consensus 70 vFla-----~p--~~~s~~~v~~~~~~G~-~VIDlS~~ 99 (336)
T PRK05671 70 AFFA-----AG--AAVSRSFAEKARAAGC-SVIDLSGA 99 (336)
T ss_pred EEEc-----CC--HHHHHHHHHHHHHCCC-eEEECchh
Confidence 9996 23 4566778888888887 48898864
No 100
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.77 E-value=1.1e+02 Score=31.04 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=27.6
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|++.... .|. ....+.++.+.|+++|+.+++|-..
T Consensus 148 ~~TklV~~e~~~--np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 148 PNTRLLFGETLG--NPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CCCeEEEEECCC--cccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 356778776432 120 1234678889999999999999764
No 101
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=47.92 E-value=4.2e+02 Score=29.25 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=45.0
Q ss_pred CceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEE--EcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECC
Q 019265 239 TTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFI--VEGYLFELPDTIRTITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 239 ~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~--isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s 316 (343)
.|+.++++.|..|...+++...+.-+.+..+.....++.+|.++ ++.- ++-.-...+++++|-++..++++=.+
T Consensus 182 ~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~----EGVmlntEr~ikhaiq~~~~i~vviN 257 (971)
T KOG0468|consen 182 STPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVA----EGVMLNTERIIKHAIQNRLPIVVVIN 257 (971)
T ss_pred ecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcc----cCceeeHHHHHHHHHhccCcEEEEEe
Confidence 46777888887777777777666666666554444455555444 3321 11112356788888888877776555
No 102
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=47.66 E-value=26 Score=28.75 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=51.9
Q ss_pred EEEcC-CChHHHHHHHHHHhCCCCcceeee--CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEE
Q 019265 207 TGSVG-SDPLGGFYRAKLRRANVAFCSEPI--KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIV 283 (343)
Q Consensus 207 ig~VG-~D~~G~~I~~~L~~~GVd~~~v~~--~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~i 283 (343)
++.|| .-..|..+.+.|.+ .-+...+.. .....+..+-...+ .+..-..+..++...+.+.++|++++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Dvvf~ 72 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELVALVSSSRSAGKPLSEVFP--------HPKGFEDLSVEDADPEELSDVDVVFL 72 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTG--------GGTTTEEEBEEETSGHHHTTESEEEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEEEeeeeccccCCeeehhcc--------ccccccceeEeecchhHhhcCCEEEe
Confidence 45677 67789999999987 334333321 11111111100000 00000111122223344689999999
Q ss_pred cCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 284 EGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 284 sG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
.. | .....++...+.+.|+ .++|.+..
T Consensus 73 a~-----~--~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 73 AL-----P--HGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp -S-----C--HHHHHHHHHHHHHTTS-EEEESSST
T ss_pred cC-----c--hhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 72 3 5677888888888898 78899874
No 103
>PRK05968 hypothetical protein; Provisional
Probab=47.59 E-value=2.6e+02 Score=27.85 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=29.0
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.+.++|+++.-. ..--....+.++.+.|+++|+.+++|-..
T Consensus 145 i~~tklV~ie~pt-~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 145 LPGAKLLYLESPT-SWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred cccCCEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3566778775321 10012567888999999999999999864
No 104
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=47.42 E-value=86 Score=30.97 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=54.0
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeC--C-CCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCce
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIK--D-GTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTN 279 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~--~-~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~ad 279 (343)
++++ |+.| ..|+.+++.|++.++....+..- . ...+..+.+ .|+ .+.-+++....+++.|
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g~-----------~~~V~~l~~~~f~~vD 67 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NNK-----------AVEQIAPEEVEWADFN 67 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEEEE---CCE-----------EEEEEECCccCcccCC
Confidence 4555 6555 58999999999999887755421 1 223322222 121 1222233334567899
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
++++.| .+...+....|.+.|+ +++|-++
T Consensus 68 ia~fag--------~~~s~~~ap~a~~aG~-~VIDnSs 96 (322)
T PRK06901 68 YVFFAG--------KMAQAEHLAQAAEAGC-IVIDLYG 96 (322)
T ss_pred EEEEcC--------HHHHHHHHHHHHHCCC-EEEECCh
Confidence 988843 3566777778888887 5567665
No 105
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=47.18 E-value=42 Score=32.39 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred CchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcH
Q 019265 267 YDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHY 325 (343)
Q Consensus 267 ~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~ 325 (343)
+.++.++.+.+-..++++--.-..|-....+..+++.+++.++++++|.-.-++++...
T Consensus 91 av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~ 149 (306)
T KOG3974|consen 91 AVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLP 149 (306)
T ss_pred hHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhch
Confidence 44566677888899999643223344567889999999999999999987655444433
No 106
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=46.79 E-value=1.1e+02 Score=30.75 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=54.0
Q ss_pred ceEEEEEcCCChHHHHHHH-HHHhCCCCcceeee-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 203 NVAMTGSVGSDPLGGFYRA-KLRRANVAFCSEPI-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~-~L~~~GVd~~~v~~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
+++++|+.| ..|+.+++ .|++..+....+.. .....+-.. ..+.+..... .+......+.++|+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~-----------~~f~g~~~~v-~~~~~~~~~~~~Di 68 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAA-----------PSFGGKEGTL-QDAFDIDALKKLDI 68 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchhhCCcc-----------cccCCCcceE-EecCChhHhcCCCE
Confidence 566677666 47888887 88888776444332 111111111 1111211100 11011223467899
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCC-EEEEECCCc
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGA-LVAVTASDV 318 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~-~V~fD~s~~ 318 (343)
++++. | .+...++...+.+.|. .+++|.++.
T Consensus 69 vf~a~-----~--~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITCQ-----G--GDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEECC-----C--HHHHHHHHHHHHhCCCCeEEEECChH
Confidence 99972 3 5677788888888898 489999863
No 107
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=46.33 E-value=9.8 Score=38.86 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=7.0
Q ss_pred EEEcCCC-hHHHHHHHHH
Q 019265 207 TGSVGSD-PLGGFYRAKL 223 (343)
Q Consensus 207 ig~VG~D-~~G~~I~~~L 223 (343)
+|.+-.| +.-..++.-|
T Consensus 197 CGTLDEDRPLE~AY~Scl 214 (458)
T PF10446_consen 197 CGTLDEDRPLEAAYISCL 214 (458)
T ss_pred CCCcCCcchHHHHHHHHH
Confidence 3444444 3333344433
No 108
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.26 E-value=1.7e+02 Score=29.76 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=56.5
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHH---HHHHHHHHhCCCCcceeeeCCCCceEEEEEECC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLG---GFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP 249 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G---~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~ 249 (343)
..-...+|.++..+..++.+.- .+..++.. ..++ ..+...++..|+.+.++...
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~-------GD~Vlv~~---~~y~~t~~~~~~~~~~~Gv~v~~vd~~------------- 137 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASA-------GDEIVSSS---SLYGGTYNLFAHTLPKLGITVKFVDPS------------- 137 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCC-------CCEEEEcc---CchhhHHHHHHHHHHhCCEEEEEECCC-------------
Confidence 4456777877766555544432 13444432 2233 23455677777776554210
Q ss_pred CCCeEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 250 DAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 250 dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+++++...+-.+.++|++... ..| .....+.++.+.|+++|+.+++|-..
T Consensus 138 ----------------d~e~l~~ai~~~tklV~l~sp--~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 138 ----------------DPENFEAAITDKTKALFAETI--GNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred ----------------CHHHHHHhcCCCCeEEEEECC--CCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 122222222235678887632 112 11233567888899999999999764
No 109
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=43.43 E-value=97 Score=28.91 Aligned_cols=59 Identities=25% Similarity=0.080 Sum_probs=41.0
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEe
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~ 340 (343)
-..+||+.+.|-+ + .+++...++.|++.|+.+.+|+-.......-..++.+ -.+|+++.
T Consensus 78 ~aGAd~~tV~g~A---~--~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~--~gvd~~~~ 136 (217)
T COG0269 78 EAGADWVTVLGAA---D--DATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKE--LGVDQVIL 136 (217)
T ss_pred HcCCCEEEEEecC---C--HHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHH--hCCCEEEE
Confidence 4589999998753 2 6899999999999999999999654322222223332 35666654
No 110
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=43.32 E-value=11 Score=41.26 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=6.1
Q ss_pred hhhhhhhhhcc
Q 019265 31 KLQALVFRKFS 41 (343)
Q Consensus 31 ~~~~~~~~~~~ 41 (343)
++-..||+.|.
T Consensus 607 ~~~~~vf~~~~ 617 (784)
T PF04931_consen 607 KVSEQVFEAFC 617 (784)
T ss_pred HHHHHHHHHHH
Confidence 34455666664
No 111
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=43.00 E-value=1.1e+02 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=32.4
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
-..+|.+.++|.. .. ..+.+.++++..|+..+++++-|++.
T Consensus 30 ~~gtdai~vGGS~-~v--t~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 30 ESGTDAIIVGGSD-GV--TEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred hcCCCEEEEcCCC-cc--chHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 4578999999864 12 25778888888888899999999874
No 112
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=42.44 E-value=50 Score=34.20 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=41.0
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCE-EEEECCCcc-----h-hhhcHHHHH-HhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGAL-VAVTASDVT-----C-IERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~-V~fD~s~~~-----~-~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
..+.+.+ |+.. +.+.+..+++.+++.+.+ +++||.... + .+...+.+. ++++++||+.+|.
T Consensus 78 ~~~aik~-G~l~----~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~ 146 (502)
T PLN02898 78 PVDVVKT-GMLP----SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNV 146 (502)
T ss_pred CCCEEEE-CCcC----CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCH
Confidence 4566666 5431 367888888888888875 999996421 1 112233443 6889999999985
No 113
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=42.43 E-value=1.7e+02 Score=29.17 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|+++.-. .|. ....+.++.+.|+++|+.+++|-..
T Consensus 143 ~~tklV~le~p~--Np~G~v~dl~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 143 DNTKIVYFETPA--NPTMKLIDMERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred cCCeEEEEECCC--CCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 356778875321 121 1234677888889999999999875
No 114
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=42.34 E-value=47 Score=32.18 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=44.0
Q ss_pred hccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhC--CCEEEEECCCcc-----hhhhcHHHHH-HhcccCcEEEeec
Q 019265 273 NLISKTNIFIVEGYLFELPDTIRTITKACEVAHRS--GALVAVTASDVT-----CIERHYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 273 ~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~--G~~V~fD~s~~~-----~~~~~~e~l~-elL~~vDIlf~~~ 342 (343)
..+..+|.|+. ||+- .+.....+..++++.|+. ...+++||.--. ......+.+. ++++++|++.||.
T Consensus 69 ~~~~~~davlt-GYlg-s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~ 144 (281)
T COG2240 69 DKLGECDAVLT-GYLG-SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNI 144 (281)
T ss_pred ccccccCEEEE-ccCC-CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCH
Confidence 35667888765 7853 223356677777777776 456999986421 1122334444 6999999999985
No 115
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=42.27 E-value=2.4e+02 Score=27.86 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=25.7
Q ss_pred CceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|+++.-. .| .....+.++.+.|+++|+.+++|-..
T Consensus 139 ~tklV~le~p~--np~g~~~dl~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 139 NTKLVFVETPS--NPLGELVDIAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred CceEEEEECCC--CCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 46777775321 11 11234677788888999999999875
No 116
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=41.73 E-value=2.4e+02 Score=28.27 Aligned_cols=107 Identities=19% Similarity=0.016 Sum_probs=57.4
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCC
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQ 252 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGe 252 (343)
......+|.+++.+...+-+.- .+..++...--...-..+.+.++..|+.+.++..
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~-------Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~----------------- 142 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGA-------GDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG----------------- 142 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCC-------CCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC-----------------
Confidence 4557788888877765554432 1344444311111223344566777776655421
Q ss_pred eEEEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 253 RAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 253 Rt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+++++...+-.+.++|+++.-. .|. ....+.++.+.|+++|+.+++|-..
T Consensus 143 ------------~d~~~l~~ai~~~tklV~~esp~--Nptg~v~dl~~I~~la~~~g~~vivD~a~ 194 (403)
T PRK07810 143 ------------EDLSQWEEALSVPTQAVFFETPS--NPMQSLVDIAAVSELAHAAGAKVVLDNVF 194 (403)
T ss_pred ------------CCHHHHHHhcCcCceEEEEECCC--CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 02222222112356778774321 121 1234677888899999999999875
No 117
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=41.28 E-value=1.3e+02 Score=30.19 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=54.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHH-hCCCCcceee-eCC-CCceEEEEEECCCCCeEEEEecCCCCCCCCchhhh-hccCCc
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLR-RANVAFCSEP-IKD-GTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLV-NLISKT 278 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~-~~GVd~~~v~-~~~-~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~-~~i~~a 278 (343)
+++++|+.|- .|+.+++.|. +..+....+. ... ..-+... ...|+. ....++.. +.+++.
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~---~f~~~~-----------~~v~~~~~~~~~~~v 65 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP---SFGGTT-----------GTLQDAFDIDALKAL 65 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhCCCCccccEEEEEchhhCCCcC---CCCCCc-----------ceEEcCcccccccCC
Confidence 5666776664 8999999888 6667644332 211 1111111 111111 11111211 245788
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhCCC-EEEEECCCc
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRSGA-LVAVTASDV 318 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~G~-~V~fD~s~~ 318 (343)
|+++++. + .+...++...++++|. .+++|-++.
T Consensus 66 Divffa~-----g--~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 66 DIIITCQ-----G--GDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred CEEEEcC-----C--HHHHHHHHHHHHhCCCCeEEEECChh
Confidence 9999973 2 4677788888999997 588998863
No 118
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=41.20 E-value=1.7e+02 Score=29.30 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=26.2
Q ss_pred CceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 277 KTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 277 ~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
+.++|++..-. .|. ....+.++.+.|+++|+.+++|-...
T Consensus 149 ~tklV~ie~p~--NPtg~v~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 149 GCDLLYLETPT--NPTLKIVDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCeEEEEECCC--CCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence 56788875321 121 12235678888999999999998753
No 119
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=40.74 E-value=3.3e+02 Score=27.04 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
++.++|+++.-. +.......+.++.+.|+++|+.+++|-..
T Consensus 134 ~~tklV~lesp~-Np~g~~~dl~~I~~la~~~g~~livD~t~ 174 (377)
T TIGR01324 134 PNTKVLFLEAPS-SITFEIQDIPAIAKAARNPGIVIMIDNTW 174 (377)
T ss_pred CCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 357788876422 11123567889999999999999999764
No 120
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=39.58 E-value=2.1e+02 Score=28.36 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=51.4
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceee--eCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEP--IKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~--~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
++.++|..|. .|..+.+.|.+.+.....+. ......+..+-. .| . .+..+++....+.++|+
T Consensus 9 kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~---~~-~----------~~~v~~~~~~~~~~~D~ 72 (344)
T PLN02383 9 SVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF---EG-R----------DYTVEELTEDSFDGVDI 72 (344)
T ss_pred eEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee---cC-c----------eeEEEeCCHHHHcCCCE
Confidence 6777777665 79999999988554433332 111222222211 11 1 11122222233467899
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
++++ + | .....++...+.+.|+ .++|.+..
T Consensus 73 vf~a---~--p--~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 73 ALFS---A--G--GSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred EEEC---C--C--cHHHHHHHHHHHhCCC-EEEECCch
Confidence 9986 2 3 3566777777777775 67898864
No 121
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=39.25 E-value=9.9 Score=33.23 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=6.9
Q ss_pred hhhhhhhcccCc
Q 019265 33 QALVFRKFSLGK 44 (343)
Q Consensus 33 ~~~~~~~~~~~~ 44 (343)
+.|.+|..+||.
T Consensus 30 h~L~L~~v~Lga 41 (149)
T PF03066_consen 30 HQLSLRQVCLGA 41 (149)
T ss_dssp EEEEEEEEEE-T
T ss_pred cEEEEEEeecCC
Confidence 346667777765
No 122
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=38.97 E-value=86 Score=27.88 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=61.3
Q ss_pred cCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEEEEcCc---
Q 019265 210 VGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGY--- 286 (343)
Q Consensus 210 VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~--- 286 (343)
+|++.....+++.|++.+.+...+.....+.-....... ......... .............+++.+++.|-
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~vii~GGg~~ 75 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPDPDEFSKYYKN--KSIFNIDLS----KLWRKRRRKSKIKNADDVIIGGGGGS 75 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCChHHHHHHhcc--cccchhhhh----hhhhhhhcccccccCCeEEEECCccc
Confidence 588888999999999999777665433211111000000 000000000 00000000000034454444433
Q ss_pred --CC-CCCchHHHHHHHHHHHHhCCCEEEEECCCc--chhhhcHHHHHHhcccCcEEEe
Q 019265 287 --LF-ELPDTIRTITKACEVAHRSGALVAVTASDV--TCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 287 --~l-~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~--~~~~~~~e~l~elL~~vDIlf~ 340 (343)
.. ...... .....+..++..++++++=.... ...+..+..++.+++.++++++
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~v 133 (286)
T PF04230_consen 76 DNNFIDLWSLP-IFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISV 133 (286)
T ss_pred ccCCCcchhhH-HHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEE
Confidence 11 111011 33667777888899887766543 2234456678889999998764
No 123
>PRK09330 cell division protein FtsZ; Validated
Probab=38.59 E-value=1.2e+02 Score=30.75 Aligned_cols=142 Identities=12% Similarity=0.108 Sum_probs=71.5
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCc-eEEEEEECCCCCeE
Q 019265 176 AAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTT-GTVIVLTTPDAQRA 254 (343)
Q Consensus 176 ~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~T-g~~iVlid~dGeRt 254 (343)
+-.||++.|+.-.+.+.|.+ .+.|+ ++-+|. +.|++...+.. ++....-| |. ...++..
T Consensus 19 iGvGG~G~Nav~~m~~~~~~-------~v~fi-a~NTD~------q~L~~~~a~~k-i~lG~~~t~Gl-----GaG~~pe 78 (384)
T PRK09330 19 IGVGGGGGNAVNRMIEEGIQ-------GVEFI-AANTDA------QALLKSKAPVK-IQLGEKLTRGL-----GAGANPE 78 (384)
T ss_pred EEECCcHHHHHHHHHHcCCC-------CceEE-EEeCcH------HHHhcCCCCeE-EEcCCcccccC-----CCCCCHH
Confidence 56799999999999998873 45554 455563 35555444422 11111100 00 0011110
Q ss_pred EEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhh------hcHHHH
Q 019265 255 MLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIE------RHYDDF 328 (343)
Q Consensus 255 ~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~------~~~e~l 328 (343)
.|........+...+.+.++|.|++..-+--... .-...-+.+.||+.|+.++-=...++..+ .....+
T Consensus 79 ----~G~~aaee~~e~I~~~l~~~D~vfI~AGmGGGTG-TGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL 153 (384)
T PRK09330 79 ----VGRKAAEESREEIREALEGADMVFITAGMGGGTG-TGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGI 153 (384)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCEEEEEecCCCccc-HHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHH
Confidence 0110000111234567789999987543211111 22334566778888865432222222211 134578
Q ss_pred HHhcccCcEEEeec
Q 019265 329 WYEYYMVLIVVLEF 342 (343)
Q Consensus 329 ~elL~~vDIlf~~~ 342 (343)
.++.+++|.+++--
T Consensus 154 ~~L~~~~D~vIvi~ 167 (384)
T PRK09330 154 EELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHCCEEEEEe
Confidence 88889999887643
No 124
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=38.46 E-value=98 Score=28.47 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 294 IRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.+.+.++++.+++.|..+.++.+.... ...+.+.++++.+|.+.+++
T Consensus 85 ~~~~~~l~~~~k~~g~~i~l~TNG~~~--~~~~~~~~ll~~~d~v~isl 131 (246)
T PRK11145 85 AEFVRDWFRACKKEGIHTCLDTNGFVR--RYDPVIDELLDVTDLVMLDL 131 (246)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC--cchHHHHHHHHhCCEEEECC
Confidence 456678899999999999998876321 12356677777888776654
No 125
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=38.45 E-value=9.9 Score=19.98 Aligned_cols=9 Identities=67% Similarity=1.021 Sum_probs=3.5
Q ss_pred ecccccccc
Q 019265 47 VRGGFMGKK 55 (343)
Q Consensus 47 ~~~~~~~~~ 55 (343)
..|-|||||
T Consensus 5 AvGh~Mgkk 13 (14)
T PF02044_consen 5 AVGHFMGKK 13 (14)
T ss_dssp HHHCT----
T ss_pred ceeeeeccC
Confidence 357899998
No 126
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.96 E-value=1.5e+02 Score=27.99 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=38.9
Q ss_pred ccCCceEEEEcCcCCCCCchHHHHHHHHHHHH-hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEe
Q 019265 274 LISKTNIFIVEGYLFELPDTIRTITKACEVAH-RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 274 ~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak-~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~ 340 (343)
.-.++|.+.++|.. .. ..+.+.++++..| +.+.++++-|++.. .+.+++|.+|+
T Consensus 38 ~~~GTDaImIGGS~-gv--t~~~~~~~v~~ik~~~~lPvilfP~~~~----------~is~~aDavff 92 (240)
T COG1646 38 AEAGTDAIMIGGSD-GV--TEENVDNVVEAIKERTDLPVILFPGSPS----------GISPYADAVFF 92 (240)
T ss_pred HHcCCCEEEECCcc-cc--cHHHHHHHHHHHHhhcCCCEEEecCChh----------ccCccCCeEEE
Confidence 34579999999864 22 2567888888888 88999999999753 33456665543
No 127
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=37.79 E-value=3.5e+02 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|++..- ..| .....+.++.+.|+++|+.+++|-..
T Consensus 135 ~~tklv~le~P--~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 135 PNTKAIFIETP--TNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred cCceEEEEECC--CCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 35678887421 122 12567888999999999999999654
No 128
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.35 E-value=18 Score=41.66 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=12.0
Q ss_pred CCCccccccccCCCCCCCCCCc
Q 019265 86 RDNYEEDDEAGDESEADDDGDE 107 (343)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ 107 (343)
-|..|||+|++++.|++|||||
T Consensus 1742 ddddddd~EaEdddDddDdDde 1763 (3015)
T KOG0943|consen 1742 DDDDDDDAEAEDDDDDDDDDDE 1763 (3015)
T ss_pred ccccccchhhcccccccccccc
Confidence 4555555555555555555543
No 129
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=36.34 E-value=44 Score=36.67 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=41.4
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhC-CCEEEEECCCcc------hhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRS-GALVAVTASDVT------CIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~-G~~V~fD~s~~~------~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..+.+-+ |+.. +.+.+..+++.+++. +.+|++||.... ..+...+.++++++++||+.+|.
T Consensus 310 ~~~aiKi-GmL~----s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~ 377 (755)
T PRK09517 310 TVDAVKL-GMLG----SADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNI 377 (755)
T ss_pred CCCEEEE-CCCC----CHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCH
Confidence 3566666 4431 367778888888875 577999996421 11223455678999999999985
No 130
>PRK05939 hypothetical protein; Provisional
Probab=36.00 E-value=4.2e+02 Score=26.51 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|++.... .| .....+.++.+.|+++|+.+++|-..
T Consensus 130 ~~tklV~vesp~--NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 130 PNTRMVFVETIA--NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCeEEEEECCC--CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 457788886422 22 12456788999999999999999864
No 131
>PRK07324 transaminase; Validated
Probab=34.83 E-value=4.4e+02 Score=25.70 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=28.4
Q ss_pred CCceEEEEcCcCCCCCc----hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD----TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~----s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.+++++..- ..|. +.+.+.++++.|+++++.++.|-..
T Consensus 152 ~~~kli~i~~p--~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y 195 (373)
T PRK07324 152 PNTKLICINNA--NNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY 195 (373)
T ss_pred CCCcEEEEeCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccc
Confidence 45677777632 1221 3677889999999999999999654
No 132
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=34.76 E-value=2.4e+02 Score=23.44 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=25.3
Q ss_pred hhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEE
Q 019265 272 VNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVT 314 (343)
Q Consensus 272 ~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD 314 (343)
.+.+.+.++++.+.- +......+.+.+++++++++.-
T Consensus 84 ~~~~~~~diVi~~~d------~~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 84 DDFLDGVDLVIDAID------NIAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred HHHhcCCCEEEECCC------CHHHHHHHHHHHHHcCCCEEEE
Confidence 345678898887632 2455667778888888776543
No 133
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=34.39 E-value=3.4e+02 Score=27.26 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=25.9
Q ss_pred CceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|++... ..|. ....+.++.+.|+++|+.+++|-..
T Consensus 142 ~t~~V~le~p--~NPtg~v~dl~~I~~la~~~~i~livD~t~ 181 (418)
T TIGR01326 142 NTKAVFAETI--GNPAINVPDIEAIAEVAHAHGVPLIVDNTF 181 (418)
T ss_pred CCeEEEEECC--CCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 5677777632 1221 1224677888899999999999764
No 134
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.16 E-value=3.5e+02 Score=27.35 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=26.5
Q ss_pred CceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|++.... .|. ....+.++.+.|+++|+.+++|-..
T Consensus 148 ~tklV~vesp~--NptG~v~dl~~I~~la~~~gi~livD~a~ 187 (427)
T PRK05994 148 RTKAIFIESIA--NPGGTVTDIAAIAEVAHRAGLPLIVDNTL 187 (427)
T ss_pred CCeEEEEECCC--CCCCeecCHHHHHHHHHHcCCEEEEECCc
Confidence 57788885321 121 1223678888899999999999875
No 135
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=34.02 E-value=1.5e+02 Score=26.70 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=41.5
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEee
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLE 341 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~ 341 (343)
+++++.+.|+.+. .+.+..+-+.+++.|+.|..||-.+. +..+..+.+.+|.+--+|+.
T Consensus 22 d~~~I~T~Gs~i~----~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp~~khafi~ 80 (174)
T TIGR00334 22 DVDVIETNGSALK----DETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLPGYENCFIP 80 (174)
T ss_pred CceEEEECCCccC----HHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCCCCeEEeee
Confidence 5899999998752 56666666667778999999997542 33556667767766655553
No 136
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=33.98 E-value=3.2e+02 Score=24.19 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=65.6
Q ss_pred EEEEEcCCChHHHHHHH--HHHhCCCCcceeeeC-CCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEE
Q 019265 205 AMTGSVGSDPLGGFYRA--KLRRANVAFCSEPIK-DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 205 ~lig~VG~D~~G~~I~~--~L~~~GVd~~~v~~~-~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv 281 (343)
.+.|.+.....-+.++. .++..|..+..++.. +.+-+.. .+++.+|...-... ...-...++........++|
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~-~I~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGED-KIVSHDGISLEAIV---DPIDNLFEIIDILENDYDVI 80 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSS-EEEHTTSCEEEEES---SEESSGGGGGGGCCTTCSEE
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCC-eEEecCCCcccccc---cchhhHHHHHHHhccCCCEE
Confidence 56678888776666664 356677776655532 2222211 23344554322220 01111223333333349999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEE
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVV 339 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf 339 (343)
.++-..+-. +.+.++++.+...|++|++--=.........+.+..+++++|-+.
T Consensus 81 ~IDEaQFf~----~~i~~l~~~~~~~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~ 134 (176)
T PF00265_consen 81 GIDEAQFFD----EQIVQLVEILANKGIPVICAGLDTDFRGEPFGGSPRLLPLADKIT 134 (176)
T ss_dssp EESSGGGST----TTHHHHHHHHHHTT-EEEEEEESB-TTSSB-TTHHHHHHH-SEEE
T ss_pred EEechHhhH----HHHHHHHHHHHhCCCeEEEEeeCCccccCcchhHHHHHhhCCeEE
Confidence 997654421 345678888888999888542221222223456677888888764
No 137
>KOG4813 consensus Translation initiation factor eIF3, p35 subunit [Translation, ribosomal structure and biogenesis]
Probab=33.72 E-value=33 Score=32.36 Aligned_cols=46 Identities=28% Similarity=0.399 Sum_probs=25.0
Q ss_pred cCCCCCCCCCCccccccccCCCCCCCCCCcchhhhccCCCCCCCCc
Q 019265 78 NGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSASVLPERW 123 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
-|++++.+-++-+..|+.++.+++-+||||...++.......+++.
T Consensus 13 ~~~~~~~~~~~w~~ed~de~v~dsWeDdDeEk~~e~~~k~eap~k~ 58 (248)
T KOG4813|consen 13 VGPGGAALGDKWDGEDEDEDVKDSWEDDDEEKKEEAKVKPEAPEKV 58 (248)
T ss_pred cCcccccccccccccccchhhhccccccccccccccCCCCCCcCcc
Confidence 4666666666655555555566665555544444444444444443
No 138
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=33.53 E-value=4.1e+02 Score=27.29 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=39.6
Q ss_pred hhccCCceEEEEcCcCCC---CC-ch-----HHHHHHHHHHHHh-CCCEEEEECCCcchhhhcHHHHHHhcccCc
Q 019265 272 VNLISKTNIFIVEGYLFE---LP-DT-----IRTITKACEVAHR-SGALVAVTASDVTCIERHYDDFWYEYYMVL 336 (343)
Q Consensus 272 ~~~i~~adiv~isG~~l~---~p-~s-----~~~i~~ll~~Ak~-~G~~V~fD~s~~~~~~~~~e~l~elL~~vD 336 (343)
.+..+..|...++||... .+ ++ .+...+-++..|+ .++++=+...+....+.-++.+..+++.++
T Consensus 220 ~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~ 294 (466)
T COG4809 220 DEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVY 294 (466)
T ss_pred HHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhh
Confidence 345667999999999631 12 12 2344455555666 789999988765433333455555666554
No 139
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.37 E-value=1.9e+02 Score=22.70 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=48.8
Q ss_pred EcCC-ChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCch-hhhhccCCceEEEEcCc
Q 019265 209 SVGS-DPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDP-CLVNLISKTNIFIVEGY 286 (343)
Q Consensus 209 ~VG~-D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~d-i~~~~i~~adiv~isG~ 286 (343)
.||. +..-..+++.+++.|...... .. + +| ..... ..+..++++|+|++-.-
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h---g~---------~-~~-------------~~~~~~~l~~~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH---GR---------D-GG-------------DEKKASRLPSKIKKADLVIVFTD 57 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE---ec---------C-CC-------------CccchhHHHHhcCCCCEEEEEeC
Confidence 4554 556677888888877765432 00 1 11 11111 23456788898876322
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCEEEEECC
Q 019265 287 LFELPDTIRTITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 287 ~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s 316 (343)
.. +...+..+-+.|++.++++++--+
T Consensus 58 ~v----sH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 58 YV----SHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred Cc----ChHHHHHHHHHHHHcCCcEEEECC
Confidence 12 378889999999999999998653
No 140
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=33.27 E-value=1.1e+02 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
..+|.+.++|..- . +.+.+.++++..|+..+++++-|++.
T Consensus 26 ~gtdai~vGGS~~-v--t~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 26 SGTDAILIGGSQG-V--TYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred cCCCEEEEcCCCc-c--cHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 4689999998642 2 25788888999999999999999864
No 141
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=32.91 E-value=1.5e+02 Score=24.46 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHHHHhCCCEEEEECC
Q 019265 288 FELPDTIRTITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 288 l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s 316 (343)
+.+| .+.+..+++.|.+.|+.++|---
T Consensus 6 ~SMP--~~~L~~l~~~a~~~~~~~V~RG~ 32 (113)
T PF09673_consen 6 FSMP--DASLRNLLKQAERAGVVVVFRGF 32 (113)
T ss_pred CCCC--HHHHHHHHHHHHhCCcEEEEECC
Confidence 4455 67778888888888888777653
No 142
>PRK13018 cell division protein FtsZ; Provisional
Probab=32.90 E-value=1.6e+02 Score=29.65 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEE
Q 019265 176 AAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAM 255 (343)
Q Consensus 176 ~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~ 255 (343)
+-.||++.|+.-.+.+.|.+ .+.|+ ++-+|. +.|.....+.. +......|.- ....+++.
T Consensus 34 iGvGGaG~N~v~~m~~~~~~-------~v~~i-aiNTD~------q~L~~~~a~~k-i~iG~~~t~G----~GaG~dp~- 93 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIE-------GAETI-AINTDA------QHLAMIKADKK-ILIGKSLTRG----LGAGGDPE- 93 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCC-------CceEE-EEECCH------HHHhcCCCCcE-EecCCccCCC----CCCCCChH-
Confidence 56799999999999998873 34444 566675 55555443322 1111110000 00011110
Q ss_pred EEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhh------hcHHHHH
Q 019265 256 LAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIE------RHYDDFW 329 (343)
Q Consensus 256 i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~------~~~e~l~ 329 (343)
.|........+...+.+.++|.|++..-+--... .-....+++.|++.++.++-=...|+..+ .....+.
T Consensus 94 ---~G~~aaee~~d~I~~~le~~D~vfI~aGLGGGTG-SGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~ 169 (378)
T PRK13018 94 ---VGRKAAEESRDEIKEVLKGADLVFVTAGMGGGTG-TGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIE 169 (378)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCEEEEEeeccCcch-hhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHH
Confidence 0000000011223456788998887533211111 23446667788888765432122222211 1235788
Q ss_pred HhcccCcEEEee
Q 019265 330 YEYYMVLIVVLE 341 (343)
Q Consensus 330 elL~~vDIlf~~ 341 (343)
++.+++|.+++-
T Consensus 170 ~L~e~~D~vivi 181 (378)
T PRK13018 170 RLREAADTVIVI 181 (378)
T ss_pred HHHHhCCEEEEE
Confidence 888999988764
No 143
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=32.87 E-value=54 Score=34.25 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=37.5
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhC-CCEEEEECCCc------chhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRS-GALVAVTASDV------TCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~-G~~V~fD~s~~------~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
..+.+.+ |+.. +.+.+..+.+..++. +.+|++||... .+.+...+.++++++++||+.+|.
T Consensus 98 ~~~aiki-G~l~----s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~ 165 (530)
T PRK14713 98 TVDAVKI-GMLG----DAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNL 165 (530)
T ss_pred CCCEEEE-CCcC----CHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCCh
Confidence 4566777 5532 234444444444443 34689999752 112334567788999999999985
No 144
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=32.43 E-value=1.6e+02 Score=29.20 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=68.7
Q ss_pred EEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeE
Q 019265 175 KAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRA 254 (343)
Q Consensus 175 ~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt 254 (343)
-+-.||++.|++-.+.+.+.+ .+. +-++-+|. +.|+....+... ......|.- ....+...
T Consensus 22 viGvGg~G~n~v~~l~~~~~~-------~~~-~iainTD~------~~L~~~~a~~ki-~iG~~~t~G----~GaG~~~~ 82 (349)
T TIGR00065 22 VIGVGGGGNNTVNRMLEEGVE-------GVE-FIAINTDA------QHLKTTKADKKI-LIGKKLTRG----LGAGGNPE 82 (349)
T ss_pred EEEeCCcHHHHHHHHHHcCCC-------ceE-EEEEECCH------HHHhcCCCCeEE-EcCCCCCCC----CCCCCCHH
Confidence 356799999999999998872 333 33455664 445554433221 111111110 00011111
Q ss_pred EEEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhh------hcHHHH
Q 019265 255 MLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIE------RHYDDF 328 (343)
Q Consensus 255 ~i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~------~~~e~l 328 (343)
.|........+...+.+.++|.|++..-+--... .-...-+.+.+++.++.++-=...|+..+ .....+
T Consensus 83 ----~G~~~aee~~d~Ir~~le~~D~vfI~aglGGGTG-SG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l 157 (349)
T TIGR00065 83 ----IGRKAAEESRDEIRKLLEGADMVFITAGMGGGTG-TGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGL 157 (349)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCEEEEEEeccCccc-hhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHH
Confidence 0110000011223456788998887432211111 12344555667777754432222222111 123467
Q ss_pred HHhcccCcEEEee
Q 019265 329 WYEYYMVLIVVLE 341 (343)
Q Consensus 329 ~elL~~vDIlf~~ 341 (343)
.++.+.+|.+++-
T Consensus 158 ~~L~~~~D~vivi 170 (349)
T TIGR00065 158 ERLKQAVDTLIVI 170 (349)
T ss_pred HHHHHhCCEEEEE
Confidence 7888899988764
No 145
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=32.29 E-value=46 Score=33.02 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=9.8
Q ss_pred chhhhccCCCCCCC
Q 019265 108 YDEEISGSASVLPE 121 (343)
Q Consensus 108 ~~~~~~~~~~~~~~ 121 (343)
+|||..-|+-+...
T Consensus 289 ~EeeplnsedDvsd 302 (348)
T KOG2652|consen 289 VEEEPLNSEDDVSD 302 (348)
T ss_pred cccccccCcccccc
Confidence 37777777777765
No 146
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=32.23 E-value=61 Score=33.59 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=61.4
Q ss_pred EEEEEcCCChHHHH-HHHH---HHhCCCCcceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchh---hhhccCC
Q 019265 205 AMTGSVGSDPLGGF-YRAK---LRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPC---LVNLISK 277 (343)
Q Consensus 205 ~lig~VG~D~~G~~-I~~~---L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di---~~~~i~~ 277 (343)
..++.-|.|+.|.. +... ++..|+..-.+ -+++..-+..|-..+ ..+.++.+ ...++.+
T Consensus 232 ~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~-------vta~t~qn~~~~~~~-------~~~~~~~~~~ql~~l~~d 297 (504)
T PTZ00347 232 TVLTVSGSDSGGGAGHQADLKTLEALGVYSTSA-------LTSLTAQNTKGVQQI-------QVVNEDFFAAQIDSVMSD 297 (504)
T ss_pred eEEEEeCcCCCChHHHHHHHHHHHHcCCcccch-------heeEEeEcCcceeeE-------EeCCHHHHHHHHHHHHhC
Confidence 56777788877743 4444 44556554222 122333332332211 12223322 1223444
Q ss_pred ceEEEE-cCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc-----hhhh-----cHHHHH-HhcccCcEEEeec
Q 019265 278 TNIFIV-EGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT-----CIER-----HYDDFW-YEYYMVLIVVLEF 342 (343)
Q Consensus 278 adiv~i-sG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~-----~~~~-----~~e~l~-elL~~vDIlf~~~ 342 (343)
.++..+ .|+.. +.+.+..+++.++ +.++++||.... +.+. ..+.++ ++++++||+.+|.
T Consensus 298 ~~~~~Ik~G~l~----s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~ 368 (504)
T PTZ00347 298 FNISVVKLGLVP----TARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNI 368 (504)
T ss_pred CCCCEEEECCcC----CHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCH
Confidence 444443 56632 3677777777775 678999987521 1111 122333 6889999999985
No 147
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.82 E-value=3.5e+02 Score=26.71 Aligned_cols=40 Identities=35% Similarity=0.443 Sum_probs=27.3
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|+++.-. .| .....+.++.+.|+++|+.+++|-..
T Consensus 130 ~~tklv~le~ps--nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 130 PKTKLVLLESPT--NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred cCceEEEEECCC--CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 356788876421 11 11234778888999999999999864
No 148
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=31.74 E-value=23 Score=33.79 Aligned_cols=14 Identities=21% Similarity=0.435 Sum_probs=7.2
Q ss_pred CCCCCCCcchhhhc
Q 019265 100 EADDDGDEYDEEIS 113 (343)
Q Consensus 100 ~~~~~~~~~~~~~~ 113 (343)
|+++++|.||+|++
T Consensus 249 d~e~esd~de~Ee~ 262 (303)
T KOG3064|consen 249 DSEDESDSDEIEEN 262 (303)
T ss_pred ccccCCchhhHHHh
Confidence 34444455666653
No 149
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=31.40 E-value=1.1e+02 Score=26.47 Aligned_cols=61 Identities=8% Similarity=-0.056 Sum_probs=32.9
Q ss_pred eEEEEcCcCCCCCchHHHHHHHHHHHHhC-CCEEEEECCCcchhhhc-HHHHHHhcccCcEEE
Q 019265 279 NIFIVEGYLFELPDTIRTITKACEVAHRS-GALVAVTASDVTCIERH-YDDFWYEYYMVLIVV 339 (343)
Q Consensus 279 div~isG~~l~~p~s~~~i~~ll~~Ak~~-G~~V~fD~s~~~~~~~~-~e~l~elL~~vDIlf 339 (343)
..|.++|--..+....+.+.++++.+|+. +..++++.+.....+.. .....++++++|+++
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEE
Confidence 34555443222222347889999999976 55545544432211111 112347899999865
No 150
>PRK06234 methionine gamma-lyase; Provisional
Probab=31.29 E-value=3.3e+02 Score=27.18 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhC--CCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRS--GALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~--G~~V~fD~s~ 317 (343)
.+.++|+++.- ..|. ....+.++.+.|+++ |+.+++|-..
T Consensus 148 ~~tklI~iesP--~NPtG~v~dl~~I~~la~~~~~~i~livDea~ 190 (400)
T PRK06234 148 ANTKVVYLETP--ANPTLKVTDIKAISNIAHENNKECLVFVDNTF 190 (400)
T ss_pred cCCeEEEEECC--CCCCCCcCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 35677776532 1121 122356677777775 8889998764
No 151
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=31.16 E-value=1.5e+02 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 294 IRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++.+.++++.+++.|..+.++.+... ..+.+.++++++|++.+++
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~~----~~~~~~~ll~~~d~~~isl 184 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGFT----PWETIEKVLPYVDLFLFDI 184 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCCC----CHHHHHHHHhhCCEEEEee
Confidence 45567888888888888888887642 1245666777788776543
No 152
>PRK06444 prephenate dehydrogenase; Provisional
Probab=31.01 E-value=1.7e+02 Score=26.66 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=19.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCc
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAF 230 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~ 230 (343)
+.+|| |....|+++.+.|++.|...
T Consensus 3 ~~iiG--~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIG--KNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEe--cCCcHHHHHHHHHHhCCCEE
Confidence 45555 34679999999999999775
No 153
>PRK04296 thymidine kinase; Provisional
Probab=30.75 E-value=1.5e+02 Score=26.28 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=39.9
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEE
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVV 339 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf 339 (343)
+.++|.++...+ .+ .+.+.++++.++..|+.|++---.............++++.+|.+.
T Consensus 78 ~~dvviIDEaq~-l~--~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQF-LD--KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEcccc-CC--HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 678899987643 22 4557889999899999988865433222222345567778888775
No 154
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=29.72 E-value=18 Score=34.27 Aligned_cols=18 Identities=28% Similarity=0.065 Sum_probs=10.8
Q ss_pred CCCCcchhhhccCCCCCC
Q 019265 103 DDGDEYDEEISGSASVLP 120 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ 120 (343)
|||||||++....++...
T Consensus 141 ~~ddeDd~~~Ll~ELekI 158 (244)
T PF04889_consen 141 DDDDEDDTAALLRELEKI 158 (244)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 345777777666655443
No 155
>PLN02242 methionine gamma-lyase
Probab=29.63 E-value=3.6e+02 Score=27.24 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=27.1
Q ss_pred ceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 278 TNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 278 adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.++|++.... .|. ....+.++.+.|+++|+.+++|-..
T Consensus 164 tklV~lesp~--NPtG~v~dl~~I~~la~~~gi~livDea~ 202 (418)
T PLN02242 164 TKVLYFESIS--NPTLTVADIPELARIAHEKGVTVVVDNTF 202 (418)
T ss_pred CEEEEEecCC--CCCCcccCHHHHHHHHHHhCCEEEEECCC
Confidence 7788887432 221 2345688888899999999999764
No 156
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=29.58 E-value=3.3e+02 Score=26.89 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCcceee--eCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceE
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAFCSEP--IKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNI 280 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~--~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adi 280 (343)
+++++|+.| ..|..+++.|.+.......+. ..+...|..+-+ .+. .+..+++....+.+.|+
T Consensus 6 ~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~------------~~~--~~~v~~~~~~~~~~~Dv 69 (336)
T PRK08040 6 NIALLGATG--AVGEALLELLAERQFPVGELYALASEESAGETLRF------------GGK--SVTVQDAAEFDWSQAQL 69 (336)
T ss_pred EEEEEccCC--HHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEE------------CCc--ceEEEeCchhhccCCCE
Confidence 666666665 589999999998433322222 122233333322 111 11111111222357899
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
++++ + | .....++...+.+.|+ .++|.+..
T Consensus 70 vf~a---~--p--~~~s~~~~~~~~~~g~-~VIDlS~~ 99 (336)
T PRK08040 70 AFFV---A--G--REASAAYAEEATNAGC-LVIDSSGL 99 (336)
T ss_pred EEEC---C--C--HHHHHHHHHHHHHCCC-EEEECChH
Confidence 9987 2 3 4567788888877777 57898863
No 157
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=29.35 E-value=2.1e+02 Score=24.43 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.6
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECC
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s 316 (343)
+++| +.+| .+.+..+++.+.+.|.+++|.--
T Consensus 3 vFvS---~SMP--~~~Lk~l~~~a~~~g~~~VlRG~ 33 (130)
T TIGR02742 3 VFVS---FSMP--EPLLKQLLDQAEALGAPLVIRGL 33 (130)
T ss_pred EEEE---cCCC--HHHHHHHHHHHHHhCCeEEEeCC
Confidence 4455 4566 67888888888888888888753
No 158
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.07 E-value=4.4e+02 Score=23.86 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=68.9
Q ss_pred ceEEEEEcCC--ChHHHHHHHHHHhCCCCcceeeeC-----CCCceEEEEEECCCCCeEEEEecCCCCC-C-----CCch
Q 019265 203 NVAMTGSVGS--DPLGGFYRAKLRRANVAFCSEPIK-----DGTTGTVIVLTTPDAQRAMLAYQGTSST-I-----NYDP 269 (343)
Q Consensus 203 ~v~lig~VG~--D~~G~~I~~~L~~~GVd~~~v~~~-----~~~Tg~~iVlid~dGeRt~i~~~Ga~~~-l-----~~~d 269 (343)
+..+-|..|- -..-..+.+.|++.|.....+..+ +..+|+.++-++ .|++..+.+-+.... + +.+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHH
Confidence 4556665553 455677889999998777665422 246777766665 689988888765321 1 1111
Q ss_pred ---h----hhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECC
Q 019265 270 ---C----LVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 270 ---i----~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s 316 (343)
+ ...+++.+|++.++-.-. ++-......++++.+-+.+.++++.+-
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGp-MElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGP-MELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccc-hhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 1 234566789999985531 111134566677777777887776654
No 159
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=29.05 E-value=4.2e+02 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=26.6
Q ss_pred hhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEEC
Q 019265 272 VNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTA 315 (343)
Q Consensus 272 ~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~ 315 (343)
.+.++++|+++.+.. +.+....+-+.|++++++++.--
T Consensus 108 ~~~~~~~dvVi~~~d------~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 108 EEYLQKFTLVIATEE------NYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHhCCCEEEECCC------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 345678888887632 25666778888999998887643
No 160
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.02 E-value=1.5e+02 Score=27.17 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=30.4
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHh-CCCEEEEECCCc
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHR-SGALVAVTASDV 318 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~-~G~~V~fD~s~~ 318 (343)
.+|.+.++|.. .. ..+.+.++++..|+ ..+++++-|++.
T Consensus 24 gtDaI~VGGS~-gv--t~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 24 GTDAIMVGGSL-GI--VESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred CCCEEEEcCcC-CC--CHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 57999998863 22 26778888888888 579999999874
No 161
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=28.62 E-value=1.3e+02 Score=24.15 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=36.8
Q ss_pred EEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcc---------hhhhcHHHHHHhcccCcEEEeecC
Q 019265 281 FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVT---------CIERHYDDFWYEYYMVLIVVLEFN 343 (343)
Q Consensus 281 v~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~---------~~~~~~e~l~elL~~vDIlf~~~~ 343 (343)
||++|-.+. +.....+.++.+.++++|. .++.|.... +.+...+.-.+.+..+|+++.+++
T Consensus 1 IYlAgp~F~-~~~~~~~~~~~~~L~~~g~-~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~ 70 (113)
T PF05014_consen 1 IYLAGPFFS-EEQKARVERLREALEKNGF-EVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLD 70 (113)
T ss_dssp EEEESGGSS-HHHHHHHHHHHHHHHTTTT-EEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred CEEeCCcCC-HHHHHHHHHHHHHHHhCCC-EEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECC
Confidence 566665443 3345677788888888888 555665211 111223333467889999998763
No 162
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=28.41 E-value=80 Score=29.64 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=30.4
Q ss_pred hccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 273 NLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 273 ~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.+..++++++++-. ++ ...+..+++.+++.+.++++|+..
T Consensus 88 ~~~~~~davvig~Gl---~~-~~~~~~l~~~~~~~~~pvVlDa~g 128 (272)
T TIGR00196 88 ELLERYDVVVIGPGL---GQ-DPSFKKAVEEVLELDKPVVLDADA 128 (272)
T ss_pred hhhccCCEEEEcCCC---CC-CHHHHHHHHHHHhcCCCEEEEhHH
Confidence 445788999996532 21 233778899999999999999864
No 163
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=28.40 E-value=3.6e+02 Score=26.87 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|+++.- ..|. ..-.+.++.+.|+++|+.+++|-..
T Consensus 149 ~~tklV~lesp--~NptG~v~dl~~I~~la~~~gi~lvvD~a~ 189 (398)
T PRK07504 149 PNTKVFFLESP--TNPTLEVIDIAAVAKIANQAGAKLVVDNVF 189 (398)
T ss_pred cCceEEEEECC--CCCCcEecCHHHHHHHHHHcCCEEEEECCc
Confidence 36788887542 1121 1223677788888999999999874
No 164
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=28.23 E-value=1.8e+02 Score=29.47 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=32.5
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEE
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVV 339 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf 339 (343)
.+||++++..-.+... ....+.++++++++.|.+|++---. +....+.+.+-++.+|+++
T Consensus 35 ~~aD~viinTC~v~~~-a~~~~~~~i~~~~~~~~~vvvgGc~---a~~~pee~~~~~~~vd~v~ 94 (430)
T TIGR01125 35 EDADYVIVNTCGFIED-ARQESIDTIGELADAGKKVIVTGCL---VQRYKEELKEEIPEVHAIT 94 (430)
T ss_pred ccCCEEEEeCCCccch-HHHHHHHHHHHHHhcCCCEEEECCc---cccchHHHHhhCCCCcEEE
Confidence 3577777765443222 2344556666666667776664322 2223455544456677655
No 165
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=28.05 E-value=24 Score=39.52 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCEEEEECCC
Q 019265 298 TKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 298 ~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.++++..+....+-.||+++
T Consensus 545 ~~lvkvirpl~~~~~~d~~~ 564 (1233)
T KOG1824|consen 545 QQLVKVIRPLQPPSSFDASP 564 (1233)
T ss_pred HHHHHHhcccCCCccCCCCh
Confidence 44555555555556677765
No 166
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=27.40 E-value=3.4e+02 Score=26.66 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=48.3
Q ss_pred eEEEEEcCCChHHHHHHHHHHhCCCCcceee-e-CCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCceEE
Q 019265 204 VAMTGSVGSDPLGGFYRAKLRRANVAFCSEP-I-KDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF 281 (343)
Q Consensus 204 v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~-~-~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~adiv 281 (343)
+.++|.-| ..|..+.+.|.+.+.....+. . .....+..+.+ .|. .+... ++....+.+.|++
T Consensus 2 VaIvGAtG--~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~---~~~-~~~~~----------~~~~~~~~~~D~v 65 (339)
T TIGR01296 2 VAIVGATG--AVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF---KGK-ELEVN----------EAKIESFEGIDIA 65 (339)
T ss_pred EEEEcCCC--HHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee---CCe-eEEEE----------eCChHHhcCCCEE
Confidence 34455444 579999999988665543322 1 11122222221 121 11111 1112234678999
Q ss_pred EEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 282 IVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 282 ~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+++. + .....++++.+.+.|+ +++|.+.
T Consensus 66 ~~a~-----g--~~~s~~~a~~~~~~G~-~VID~ss 93 (339)
T TIGR01296 66 LFSA-----G--GSVSKEFAPKAAKCGA-IVIDNTS 93 (339)
T ss_pred EECC-----C--HHHHHHHHHHHHHCCC-EEEECCH
Confidence 8862 2 3456667777777887 5888885
No 167
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.38 E-value=2.6e+02 Score=25.27 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 294 IRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
++.+.++++.+++.|..+.+..+... . ...+.+.++++.+|.+.+++
T Consensus 80 ~~~~~~li~~~~~~g~~~~i~TNG~~-~-~~~~~~~~ll~~~d~v~isl 126 (235)
T TIGR02493 80 PEFLSELFKACKELGIHTCLDTSGFL-G-GCTEAADELLEYTDLVLLDI 126 (235)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCC-C-ccHHHHHHHHHhCCEEEEeC
Confidence 45566888888888887887776521 1 11345566666777766553
No 168
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.24 E-value=2.5e+02 Score=22.01 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=30.4
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+++++|.. .....+-+.++++|..+.+= +...........+...+..+|++++-.
T Consensus 2 vliVGG~~-------~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t 56 (97)
T PF10087_consen 2 VLIVGGRE-------DRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIKKADLVIVFT 56 (97)
T ss_pred EEEEcCCc-------ccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcCCCCEEEEEe
Confidence 56777621 12233344455677766554 222122223345888899999998754
No 169
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=26.98 E-value=60 Score=32.62 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCEEEEECCCcchhh------hcHHHHHHhccc-CcEEEee
Q 019265 296 TITKACEVAHRSGALVAVTASDVTCIE------RHYDDFWYEYYM-VLIVVLE 341 (343)
Q Consensus 296 ~i~~ll~~Ak~~G~~V~fD~s~~~~~~------~~~e~l~elL~~-vDIlf~~ 341 (343)
.+.++.+.|++++++++.|+++-...+ +.-+.+++.++. +|++.++
T Consensus 158 ~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fS 210 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFS 210 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEE
T ss_pred cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEE
Confidence 467888999999999999999721111 123456777765 9999876
No 170
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=26.81 E-value=4.5e+02 Score=26.29 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=27.0
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
.+.++|+++.- ..|. ..-.+.++.+.|+++|+.+++|-...
T Consensus 137 ~~tklV~lesP--~NPtG~v~dl~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 137 KKPKLILLETP--SNPLVRVVDIAELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred cCCeEEEEECC--CCCCCcccCHHHHHHHHHHcCCEEEEECCcc
Confidence 46788888632 2221 12234677788888999999998753
No 171
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=26.56 E-value=3.6e+02 Score=26.33 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=50.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHHhCCCCc---ceeeeCCCCceEEEEEECCCCCeEEEEecCCCCCCCCchhhhhccCCce
Q 019265 203 NVAMTGSVGSDPLGGFYRAKLRRANVAF---CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTN 279 (343)
Q Consensus 203 ~v~lig~VG~D~~G~~I~~~L~~~GVd~---~~v~~~~~~Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~~~~i~~ad 279 (343)
++.++|.-|. .|..+.+.|.+.+... ..+.. ....+..+.+ .|. .+... ++....+.++|
T Consensus 3 ~V~IvGAtG~--vG~~l~~lL~~~~hp~~~l~~l~s-~~~~g~~l~~---~g~-~i~v~----------d~~~~~~~~vD 65 (334)
T PRK14874 3 NVAVVGATGA--VGREMLNILEERNFPVDKLRLLAS-ARSAGKELSF---KGK-ELKVE----------DLTTFDFSGVD 65 (334)
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCcceEEEEEc-cccCCCeeee---CCc-eeEEe----------eCCHHHHcCCC
Confidence 5666776664 7999999999865543 33322 1222322222 121 11111 11111235789
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
+++++ + | .....++...+.+.|+ +++|++..
T Consensus 66 vVf~A---~--g--~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 66 IALFS---A--G--GSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred EEEEC---C--C--hHHHHHHHHHHHhCCC-EEEECCch
Confidence 98886 2 2 4456666777777787 78888863
No 172
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=26.43 E-value=3.2e+02 Score=27.13 Aligned_cols=60 Identities=25% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.+.++|+++.- ..| .....+.++.+.|+++|+.+++|-....... .. .+-..+||++.++
T Consensus 145 ~~tklV~ie~p--~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~----p~~~gaDivv~S~ 205 (388)
T PRK07811 145 PRTKLIWVETP--TNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL-QQ----PLALGADVVVHST 205 (388)
T ss_pred cCCeEEEEECC--CCCcceecCHHHHHHHHHHcCCEEEEECCCCcccc-CC----chhhCCcEEEecC
Confidence 36778887632 122 1245677888899999999999976432111 11 1112578777654
No 173
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.32 E-value=1.7e+02 Score=27.72 Aligned_cols=35 Identities=31% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCC
Q 019265 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRAN 227 (343)
Q Consensus 182 a~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~G 227 (343)
+.|.|.++|++|. +|.++-. |..|-.+...|.-.+
T Consensus 75 a~nLA~alA~~G~--------rVlliDa---D~~gps~~~~l~~~~ 109 (265)
T COG0489 75 AVNLAAALAQLGK--------RVLLLDA---DLRGPSIPRMLGLEN 109 (265)
T ss_pred HHHHHHHHHhcCC--------cEEEEeC---cCCCCchHHHhCCCC
Confidence 6899999999998 7777654 677777777776543
No 174
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.00 E-value=4.7e+02 Score=26.65 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=27.7
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|++.... .| .....+.++.+.|+++|+.+++|-..
T Consensus 154 ~~tklV~ie~~s--Np~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 154 PNTKAFFAETIS--NPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CCCeEEEEECCC--CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 356788876432 11 12345678888999999999999864
No 175
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=25.77 E-value=2.5e+02 Score=27.03 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=67.6
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceeeeCCCCceEEEEEECCCCCeEE
Q 019265 176 AAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAM 255 (343)
Q Consensus 176 ~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~~~~~~Tg~~iVlid~dGeRt~ 255 (343)
.-.||++.|+.-.+.+.+.+ .+.++ .+-+|. +.|++...+.... .....|.- ....++..
T Consensus 6 iGvGg~G~n~v~~l~~~~~~-------~~~~~-a~ntD~------~~L~~~~~~~k~~-ig~~~t~g----~Gag~~~~- 65 (304)
T cd02201 6 IGVGGGGGNAVNRMIESGLE-------GVEFI-AANTDA------QALAKSKAPNKIQ-LGKELTRG----LGAGGDPE- 65 (304)
T ss_pred EEeCCcHHHHHHHHHHcCCC-------CceEE-EEECCH------HHHhcCCCCcEEE-cCCCCCCC----CCCCCCHH-
Confidence 45799999999999998873 34443 344563 3455544332221 21110100 00011110
Q ss_pred EEecCCCCCCCCchhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEE-EECCCcchhh------hcHHHH
Q 019265 256 LAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVA-VTASDVTCIE------RHYDDF 328 (343)
Q Consensus 256 i~~~Ga~~~l~~~di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~-fD~s~~~~~~------~~~e~l 328 (343)
.|........+...+.+.++|.+++..-+--... .-....+.+.+++.++.++ +-+.| +..+ .....+
T Consensus 66 ---~g~~~a~~~~~~I~~~l~~~d~v~i~aglGGGTG-SG~ap~ia~~a~e~g~~~~~vvt~P-f~~Eg~~~~~nA~~~l 140 (304)
T cd02201 66 ---VGRKAAEESREEIKEALEGADMVFITAGMGGGTG-TGAAPVIAKIAKEMGALTVAVVTKP-FSFEGKKRMRQAEEGL 140 (304)
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCEEEEeeccCCCcc-hhHHHHHHHHHHHcCCCEEEEEeCC-ccccchhHHHHHHHHH
Confidence 0100000011224456778998887532211111 2234446777888775333 33332 2111 123467
Q ss_pred HHhcccCcEEEee
Q 019265 329 WYEYYMVLIVVLE 341 (343)
Q Consensus 329 ~elL~~vDIlf~~ 341 (343)
.++.+++|.+++-
T Consensus 141 ~~L~~~~d~~ivi 153 (304)
T cd02201 141 EELRKHVDTLIVI 153 (304)
T ss_pred HHHHHhCCEEEEE
Confidence 7788889988764
No 176
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=25.73 E-value=6.2e+02 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=26.6
Q ss_pred CceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|++.... .|. ..-.+.++.+.|+++|+.+++|-..
T Consensus 137 ~tklV~ie~p~--NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 137 RTKLVFIETMT--NPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred CceEEEEECCC--CCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 56788876432 221 1223567888899999999999874
No 177
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=25.68 E-value=5.8e+02 Score=24.88 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++++++|...... -+.+.+.++++.|+++++.+++|=..
T Consensus 135 ~~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy 177 (346)
T TIGR03576 135 DGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDAS 177 (346)
T ss_pred cCceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3466777777532110 01477888999999999999999654
No 178
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.97 E-value=1.4e+02 Score=22.19 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEEcCC------ChHHHHHHHHHHhCCCCcce
Q 019265 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGS------DPLGGFYRAKLRRANVAFCS 232 (343)
Q Consensus 182 a~NvA~aLArLG~~~~~~~~~~v~lig~VG~------D~~G~~I~~~L~~~GVd~~~ 232 (343)
+.=.|..|+++|. ++.++..-.. ......+.+.|++.||+...
T Consensus 11 g~E~A~~l~~~g~--------~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALAELGK--------EVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHHTTS--------EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhCc--------EEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4456778888998 8988876442 34678899999999998764
No 179
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.93 E-value=2.6e+02 Score=26.19 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCCCcceee
Q 019265 184 NSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEP 234 (343)
Q Consensus 184 NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GVd~~~v~ 234 (343)
-+..+|..||.+ ++.+++..=.| .-+.+++.|++.|+++....
T Consensus 110 A~~~AL~alg~~-------RIalvTPY~~~-v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 110 AAVDGLAALGVR-------RISLLTPYTPE-TSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred HHHHHHHHcCCC-------EEEEECCCcHH-HHHHHHHHHHhCCcEEeeee
Confidence 345678888986 88999987665 67889999999999986553
No 180
>smart00642 Aamy Alpha-amylase domain.
Probab=24.88 E-value=94 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCC
Q 019265 294 IRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.+.++++.|+++|++|++|+..
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999999999999999864
No 181
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=70 Score=28.85 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=22.9
Q ss_pred CcceeeeeccCCCCCCCCCCccccccccCCCCCCCCCCcchhhhcc
Q 019265 69 SSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISG 114 (343)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (343)
..++-||+ -++-|++-. |++++..+..+.+|.++|||+.+..
T Consensus 135 ~~mggmgg--~~~~Df~~~--~~~~~~~d~~d~e~ndeedee~g~~ 176 (180)
T KOG3158|consen 135 QMMGGMGG--AEGVDFGVL--EGDGADDDMPDSEDNDEEDEEGGSG 176 (180)
T ss_pred hccccCCc--ccccccccc--cccccCCCCCCCCcccchhhhcccc
Confidence 34455553 233445433 5555555666666666666666544
No 182
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=23.91 E-value=5.9e+02 Score=23.67 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=39.4
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhccc--CcEEEe
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYM--VLIVVL 340 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~--vDIlf~ 340 (343)
+.++|++..-+ + . ++...++.+.|++.|.+.++=+++..- ...+..+++.+.. ++++++
T Consensus 49 i~~~Dl~I~y~--l-H---PDl~~~l~~~~~e~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 49 IPEADLLIAYG--L-H---PDLTYELPEIAKEAGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CCCCCEEEEec--c-C---chhHHHHHHHHHHcCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecC
Confidence 78899988753 2 2 477889999999899888887776422 2234455555544 455554
No 183
>PRK06767 methionine gamma-lyase; Provisional
Probab=23.20 E-value=5.6e+02 Score=25.27 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCceEEEEcCcCCCCCc-hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 276 SKTNIFIVEGYLFELPD-TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~-s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
.+.++|+++.- ..|. ....+.++.+.|+++|+.+++|-..
T Consensus 145 ~~tklV~lesp--~NptG~v~dl~~I~~la~~~g~~vivD~a~ 185 (386)
T PRK06767 145 PNTKLIFVETP--INPTMKLIDLKQVIRVAKRNGLLVIVDNTF 185 (386)
T ss_pred cCceEEEEeCC--CCCCceecCHHHHHHHHHHcCCEEEEECCC
Confidence 35678887632 1221 1233577788888999999999774
No 184
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=23.14 E-value=70 Score=34.61 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCccccc-cccCCCCCCCCCCcchhhhccCCCCCCCCccEEEE
Q 019265 85 GRDNYEEDD-EAGDESEADDDGDEYDEEISGSASVLPERWDVLGL 128 (343)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vlvi 128 (343)
|...||.+| +.....++.|+.+|||||..-.-.-.....+.+.+
T Consensus 899 ~EeeeE~e~~ee~s~~~~~ds~sedEee~~e~~ph~~n~~Rq~qL 943 (952)
T KOG1834|consen 899 EEEEEETEDEEESSDSDSADSESEDEEEGTEVGPHLQNNQRQVQL 943 (952)
T ss_pred ccccccccccccccccccccCccchhhhccccCCCccccceeeee
No 185
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=22.96 E-value=2.9e+02 Score=28.00 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=39.6
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEe
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~ 340 (343)
+++++.+.+.. ..+.+.++++.+++.|+.+.+|+..+.. ..+.+.+++..+|++.+
T Consensus 250 GAD~vTVH~ea-----~~~ti~~ai~~akk~GikvgVD~lnp~t---p~e~i~~l~~~vD~Vll 305 (391)
T PRK13307 250 TADAVVISGLA-----PISTIEKAIHEAQKTGIYSILDMLNVED---PVKLLESLKVKPDVVEL 305 (391)
T ss_pred CCCEEEEeccC-----CHHHHHHHHHHHHHcCCEEEEEEcCCCC---HHHHHHHhhCCCCEEEE
Confidence 67888887532 2567889999999999999998654321 22455666777887754
No 186
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=22.93 E-value=6.8e+02 Score=24.12 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=33.6
Q ss_pred eEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCCC
Q 019265 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANV 228 (343)
Q Consensus 174 ~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~GV 228 (343)
...-+||++.=++.+|+.+|.+ +..++-+- ...++.+.+.+.+.+.
T Consensus 130 lilGAGGAarAv~~aL~~~g~~-------~i~V~NRt--~~ra~~La~~~~~~~~ 175 (283)
T COG0169 130 LILGAGGAARAVAFALAEAGAK-------RITVVNRT--RERAEELADLFGELGA 175 (283)
T ss_pred EEECCcHHHHHHHHHHHHcCCC-------EEEEEeCC--HHHHHHHHHHhhhccc
Confidence 4567899999999999999972 44444432 3467888888888775
No 187
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.87 E-value=94 Score=28.56 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 293 TIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 293 s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.+.+.++++.|+++|++|++|+..
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhhccccccceEEEeeec
Confidence 4788999999999999999999875
No 188
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=22.67 E-value=1.1e+02 Score=30.79 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=73.6
Q ss_pred ceEEecCChHHHHHHHHHHhCCCCCCCCCCceEEEEEcCCChHHHHHHHHHHhCC--CCcceee----eC-CCCceEEEE
Q 019265 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRAN--VAFCSEP----IK-DGTTGTVIV 245 (343)
Q Consensus 173 ~~~~~~GGsa~NvA~aLArLG~~~~~~~~~~v~lig~VG~D~~G~~I~~~L~~~G--Vd~~~v~----~~-~~~Tg~~iV 245 (343)
...-+.||.|.-.|.-.+.-|. +.++|.+|.-...-.+-...+-.| |--+.+. .+ +..-|-
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~~---------~~LlG~~~~R~~~~L~P~~~R~~~~~I~~DdiHlILEYK~Gd~~G~--- 204 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEGA---------QVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLILEYKAGDKWGP--- 204 (478)
T ss_pred hhhhhccCCchHHHHHHHhccc---------eeeecccccchhccccchhhhcccCcCcCCceEEEEEeccCCcccc---
Confidence 4567889988878877776665 799999998644333322222222 1111111 11 001111
Q ss_pred EECCCCCeEEEEecCCCCCCCCchhhhhc--cCCceEEEEcCcCC-CCCchH---HHHHHHHHHHH--hCCCEEEEECCC
Q 019265 246 LTTPDAQRAMLAYQGTSSTINYDPCLVNL--ISKTNIFIVEGYLF-ELPDTI---RTITKACEVAH--RSGALVAVTASD 317 (343)
Q Consensus 246 lid~dGeRt~i~~~Ga~~~l~~~di~~~~--i~~adiv~isG~~l-~~p~s~---~~i~~ll~~Ak--~~G~~V~fD~s~ 317 (343)
.+.|...|.+.....-+..+..-+...++ .-+.|.++++|... +..... +.+..+.+... ..|+++-|.+.+
T Consensus 205 ~VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS 284 (478)
T KOG4184|consen 205 YVAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS 284 (478)
T ss_pred cccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH
Confidence 11223333333222212222111111122 23789999999743 211111 11111111111 247777777776
Q ss_pred cchhhhcHHHHHHhcccCcEEEe
Q 019265 318 VTCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 318 ~~~~~~~~e~l~elL~~vDIlf~ 340 (343)
....+-..+.+..+|||+|=+=+
T Consensus 285 ~~~~~l~~~i~h~VlPyVdSLGl 307 (478)
T KOG4184|consen 285 MTNRELMSSIVHQVLPYVDSLGL 307 (478)
T ss_pred HHHHHHHHHHHHHhhhhccccCC
Confidence 43223345566778899986543
No 189
>PRK15447 putative protease; Provisional
Probab=22.64 E-value=3.7e+02 Score=25.88 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=37.6
Q ss_pred CCceEEEEcCcCCC--CCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhccc
Q 019265 276 SKTNIFIVEGYLFE--LPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYM 334 (343)
Q Consensus 276 ~~adiv~isG~~l~--~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~ 334 (343)
..+|.||++.-.+. .+-+.+.+.++++.++++|++|.+-+......+...+.+.+++..
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~ 87 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN 87 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc
Confidence 37999999744322 123478899999999999999999664321112233444554443
No 190
>PRK15452 putative protease; Provisional
Probab=22.56 E-value=2.7e+02 Score=28.64 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=33.9
Q ss_pred hhhhccCCceEEEEcCcCCCC-----CchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 270 CLVNLISKTNIFIVEGYLFEL-----PDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 270 i~~~~i~~adiv~isG~~l~~-----p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+...+-.+||.||+++-.+.. +-+.+.+.++++.|+++|+++.+-++.
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~ 68 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI 68 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC
Confidence 333445689999996543321 113477899999999999999988664
No 191
>PLN02509 cystathionine beta-lyase
Probab=22.46 E-value=8.4e+02 Score=25.15 Aligned_cols=59 Identities=29% Similarity=0.232 Sum_probs=37.3
Q ss_pred CceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 277 KTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 277 ~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.++|+++.-. .| .....+.++.+.|+++|+.+++|-....-.. . ..+-..+||++.+.
T Consensus 217 ~TklV~lesPs--NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~----~pl~~gaDivv~S~ 276 (464)
T PLN02509 217 QTKLVWLESPT--NPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-S----RPLELGADIVMHSA 276 (464)
T ss_pred CCeEEEEECCC--CCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-C----ChhhcCCcEEEecC
Confidence 57888886432 22 2356788899999999999999987421110 0 11223578887653
No 192
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=22.23 E-value=61 Score=36.61 Aligned_cols=8 Identities=63% Similarity=1.145 Sum_probs=4.3
Q ss_pred cCCCCCCC
Q 019265 78 NGGGGDLG 85 (343)
Q Consensus 78 ~~~~~~~~ 85 (343)
++||||=|
T Consensus 854 ~~~~~d~~ 861 (1096)
T TIGR00927 854 GGGGSDGG 861 (1096)
T ss_pred ccCCCCcc
Confidence 45566654
No 193
>PRK07503 methionine gamma-lyase; Provisional
Probab=22.02 E-value=5.5e+02 Score=25.63 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.2
Q ss_pred CceEEEEcCcCCCCC-chHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 277 KTNIFIVEGYLFELP-DTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 277 ~adiv~isG~~l~~p-~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
+.++|++..- ..| .....+.++.+.|+++|+.+++|-..
T Consensus 150 ~tklV~le~p--~NPtG~~~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 150 KTRMVYFETP--ANPNMRLVDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred cCcEEEEeCC--CCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 5678887532 112 11234677888889999999999865
No 194
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=21.90 E-value=1.9e+02 Score=30.10 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCCcc----hh---------hhcHHHHHHhcccCcEEEeec
Q 019265 294 IRTITKACEVAHRSGALVAVTASDVT----CI---------ERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 294 ~~~i~~ll~~Ak~~G~~V~fD~s~~~----~~---------~~~~e~l~elL~~vDIlf~~~ 342 (343)
.+.+.++.+.|+++|+++++|..-.. .+ +...+.++++..++|.+.+++
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~ 258 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSG 258 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeC
Confidence 57889999999999999999986421 11 123456788999999999876
No 195
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=21.73 E-value=1.6e+02 Score=28.40 Aligned_cols=80 Identities=6% Similarity=-0.090 Sum_probs=50.6
Q ss_pred CCCCCchhhhh------ccCCceEEEEcCcCCC---CCchHHHHHHHHHHHHhCCCEEEEECCCcch-hhhcHHHHHHhc
Q 019265 263 STINYDPCLVN------LISKTNIFIVEGYLFE---LPDTIRTITKACEVAHRSGALVAVTASDVTC-IERHYDDFWYEY 332 (343)
Q Consensus 263 ~~l~~~di~~~------~i~~adiv~isG~~l~---~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~-~~~~~e~l~elL 332 (343)
..++++++... ...+..+|+++--.-. .+-+.+.+.++.+.|+++|+++.+|-.=-.. .......+.++.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~ 183 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA 183 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh
Confidence 45777665321 1245778888633211 1124789999999999999999999863211 122455788899
Q ss_pred ccCcEEEeec
Q 019265 333 YMVLIVVLEF 342 (343)
Q Consensus 333 ~~vDIlf~~~ 342 (343)
.++|++-+++
T Consensus 184 ~~~D~v~~~~ 193 (290)
T PF01212_consen 184 AGADSVSFGG 193 (290)
T ss_dssp TTSSEEEEET
T ss_pred hhCCEEEEEE
Confidence 9999998764
No 196
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=21.73 E-value=3.4e+02 Score=26.47 Aligned_cols=58 Identities=9% Similarity=-0.066 Sum_probs=36.6
Q ss_pred ceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 278 TNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 278 adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
.+.+.+++.. -|.....+.++++.+++.|+.+.++.+... .+.++++....|.+.+++
T Consensus 130 ~~~v~iSl~G--EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-----~e~l~~L~~~~d~i~VSL 187 (322)
T PRK13762 130 PKHVAISLSG--EPTLYPYLPELIEEFHKRGFTTFLVTNGTR-----PDVLEKLEEEPTQLYVSL 187 (322)
T ss_pred CCEEEEeCCc--cccchhhHHHHHHHHHHcCCCEEEECCCCC-----HHHHHHHHhcCCEEEEEc
Confidence 3455665431 122344688889999999999999888642 244555555667666654
No 197
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.59 E-value=6.3e+02 Score=23.14 Aligned_cols=93 Identities=9% Similarity=-0.065 Sum_probs=48.6
Q ss_pred ceEEEEEECCCCCeEEEEecCCCCCCCCchhh----hhccCCceEEEEcCcC-CCCCchHHHHHHHHHHHHhCCCEEEEE
Q 019265 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCL----VNLISKTNIFIVEGYL-FELPDTIRTITKACEVAHRSGALVAVT 314 (343)
Q Consensus 240 Tg~~iVlid~dGeRt~i~~~Ga~~~l~~~di~----~~~i~~adiv~isG~~-l~~p~s~~~i~~ll~~Ak~~G~~V~fD 314 (343)
....++++++++.-..+..-.....+.+++.. .....+.+++|+.... ...+.+.+.+.++.+.. ++++.+-
T Consensus 106 ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~---~~Pv~vG 182 (205)
T TIGR01769 106 IPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKAS---GIPLIVG 182 (205)
T ss_pred cceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh---CCCEEEe
Confidence 33445667766533333222222334554421 1125688999985411 12222344444443332 6778877
Q ss_pred CCCcchhhhcHHHHHHhc-ccCcEEEe
Q 019265 315 ASDVTCIERHYDDFWYEY-YMVLIVVL 340 (343)
Q Consensus 315 ~s~~~~~~~~~e~l~elL-~~vDIlf~ 340 (343)
.+-+ ..+..++++ ..+|.+++
T Consensus 183 GGIr-----s~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 183 GGIR-----SPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCCC-----CHHHHHHHHHcCCCEEEe
Confidence 6643 356677776 46998876
No 198
>PRK11430 putative CoA-transferase; Provisional
Probab=21.54 E-value=94 Score=31.17 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=24.1
Q ss_pred hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 306 RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 306 ~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.+.-|.+|+... .-++.++++++.+||++-||
T Consensus 69 rgKrsv~lDLk~~----~Gr~~~~~L~~~ADVvien~ 101 (381)
T PRK11430 69 HGKESVVLDLKND----HDKSIFINMLKQADVLAENF 101 (381)
T ss_pred CCCeEEEecCCCH----HHHHHHHHHHhcCCEEEeCC
Confidence 4456677887653 35677888888888888886
No 199
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.51 E-value=2.6e+02 Score=26.16 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEe
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVL 340 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~ 340 (343)
.+++++.+- .+. +.....++++..|+.|+++-+-+++.. ..+.+..+|+.+|++.+
T Consensus 81 aGad~it~H---~Ea--~~~~~~~~i~~Ik~~G~kaGlalnP~T----~~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 81 AGADFITLH---PET--INGQAFRLIDEIRRAGMKVGLVLNPET----PVESIKYYIHLLDKITV 136 (229)
T ss_pred cCCCEEEEC---ccC--CcchHHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHhcCEEEE
Confidence 378887775 221 112356788899999988666665432 23567788889997743
No 200
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=21.43 E-value=2.8e+02 Score=25.82 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=26.7
Q ss_pred EEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCC
Q 019265 280 IFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASD 317 (343)
Q Consensus 280 iv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~ 317 (343)
++++-+ +.+| .+.+.++++.+++.|++++|.--.
T Consensus 92 ~~vFVS--fSMP--~~sLk~Ll~qa~~~G~p~VlRG~~ 125 (212)
T PRK13730 92 ALYFVS--FSIP--EEGLKRMLGETRHYGIPATLRGMV 125 (212)
T ss_pred eEEEEE--cCCC--HHHHHHHHHHHHHhCCcEEEeCCC
Confidence 455544 5677 789999999999999999997543
No 201
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.19 E-value=4.3e+02 Score=23.33 Aligned_cols=57 Identities=18% Similarity=0.015 Sum_probs=35.9
Q ss_pred cCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEEC-CCcchhhhcHHHHHHhcc-cCcEEEe
Q 019265 275 ISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTA-SDVTCIERHYDDFWYEYY-MVLIVVL 340 (343)
Q Consensus 275 i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~-s~~~~~~~~~e~l~elL~-~vDIlf~ 340 (343)
-.+++++.+.+.. + ...+.++++.++++|+++.+++ ++.. ..+....+.. .+|++.+
T Consensus 74 ~~Gad~i~vh~~~---~--~~~~~~~i~~~~~~g~~~~~~~~~~~t----~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 74 AAGADIVTVLGVA---D--DATIKGAVKAAKKHGKEVQVDLINVKD----KVKRAKELKELGADYIGV 132 (206)
T ss_pred HcCCCEEEEeccC---C--HHHHHHHHHHHHHcCCEEEEEecCCCC----hHHHHHHHHHcCCCEEEE
Confidence 3478888876432 2 3456788999999999999885 4321 1223333344 6777754
No 202
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.16 E-value=4e+02 Score=23.31 Aligned_cols=55 Identities=27% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEE-CCCcchhhhcHHHHHHhcc-cCcEEEe
Q 019265 276 SKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVT-ASDVTCIERHYDDFWYEYY-MVLIVVL 340 (343)
Q Consensus 276 ~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD-~s~~~~~~~~~e~l~elL~-~vDIlf~ 340 (343)
.+++++.+.+.. ..+...++++.++++|+++.++ +++... .+.+. .+. .+|++.+
T Consensus 76 aGad~i~~h~~~-----~~~~~~~~i~~~~~~g~~~~v~~~~~~t~----~e~~~-~~~~~~d~v~~ 132 (202)
T cd04726 76 AGADIVTVLGAA-----PLSTIKKAVKAAKKYGKEVQVDLIGVEDP----EKRAK-LLKLGVDIVIL 132 (202)
T ss_pred cCCCEEEEEeeC-----CHHHHHHHHHHHHHcCCeEEEEEeCCCCH----HHHHH-HHHCCCCEEEE
Confidence 478888886432 1355678889999999999987 544211 12222 333 7787654
No 203
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=21.13 E-value=99 Score=31.29 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=23.7
Q ss_pred hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 306 RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 306 ~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.+.-|++|+... .-++.+.++++.+||++-||
T Consensus 64 r~Krsi~lDLk~~----~g~~~l~~Lv~~ADVvien~ 96 (415)
T TIGR03253 64 CNKRSITLNTKTP----EGKEVLEELIKKADVMVENF 96 (415)
T ss_pred CCCeEEEeeCCCH----HHHHHHHHHHhhCCEEEECC
Confidence 3456677887653 35677888888888888876
No 204
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=21.00 E-value=73 Score=27.51 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=33.0
Q ss_pred hhhhhccCCceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEEECCCc
Q 019265 269 PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDV 318 (343)
Q Consensus 269 di~~~~i~~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~fD~s~~ 318 (343)
...+..+.++|+++++|..+.. .++..+++.+++....+.+-|+.+
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN----~Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVN----GTIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCT----TTHHHHHHHTTTSSEEEEESCCGG
T ss_pred HHHHHHHccCCEEEEEeeeeec----CCHHHHHHhCccCCeEEEEecCch
Confidence 3455678899999999987743 356778888886666777777754
No 205
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=20.81 E-value=7e+02 Score=24.84 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=19.8
Q ss_pred CceEEEEcCcCCCCCchHHHHHHHHHHHHhCCCEEEE
Q 019265 277 KTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAV 313 (343)
Q Consensus 277 ~adiv~isG~~l~~p~s~~~i~~ll~~Ak~~G~~V~f 313 (343)
+.+.++++. . +.......+.++.+.|+++|+.+++
T Consensus 204 ~t~~v~l~~-p-n~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 204 DTAAVVVQY-P-NFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred CeEEEEEEC-C-CCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 455666642 1 1112234466777777788877766
No 206
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.50 E-value=2.8e+02 Score=21.82 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCcceeeeC---CCCceEEEEEECCCCCeEEEEec
Q 019265 216 GGFYRAKLRRANVAFCSEPIK---DGTTGTVIVLTTPDAQRAMLAYQ 259 (343)
Q Consensus 216 G~~I~~~L~~~GVd~~~v~~~---~~~Tg~~iVlid~dGeRt~i~~~ 259 (343)
=+.+.+.|++.|+........ ....+..+.+.||+|.+--+.+|
T Consensus 82 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 82 VDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 356888999999986654321 12344556667999988766553
No 207
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.10 E-value=48 Score=35.94 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC
Q 019265 296 TITKACEVAHRSGALVAVTAS 316 (343)
Q Consensus 296 ~i~~ll~~Ak~~G~~V~fD~s 316 (343)
.+..++.+-++++..|.+|.-
T Consensus 521 ~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred HHHHHHHHHhhcceehHHHHH
Confidence 334444444556666666653
No 208
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=20.01 E-value=1e+02 Score=31.17 Aligned_cols=33 Identities=6% Similarity=-0.040 Sum_probs=23.9
Q ss_pred hCCCEEEEECCCcchhhhcHHHHHHhcccCcEEEeec
Q 019265 306 RSGALVAVTASDVTCIERHYDDFWYEYYMVLIVVLEF 342 (343)
Q Consensus 306 ~~G~~V~fD~s~~~~~~~~~e~l~elL~~vDIlf~~~ 342 (343)
+.+.-|.+|+... .-++.+.++++.+|||+-||
T Consensus 65 rgKrsi~lDLk~~----eGr~~l~~Lv~~ADVvien~ 97 (416)
T PRK05398 65 SNKRSITLDTKTP----EGKEVLEKLIREADVLVENF 97 (416)
T ss_pred CCCeEEEeeCCCH----HHHHHHHHHHhcCCEEEECC
Confidence 3456677888653 35677888888888888876
Done!